Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38109.t1 | XP_003618025.2 | 98.1 | 362 | 6 | 1 | 1 | 362 | 5 | 365 | 1.40E-202 | 715.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38109.t1 | Q00763 | 68.0 | 353 | 112 | 1 | 10 | 362 | 14 | 365 | 1.7e-143 | 510.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38109.t1 | G7K511 | 98.1 | 362 | 6 | 1 | 1 | 362 | 5 | 365 | 1.0e-202 | 715.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049148 | MS.gene38109 | 0.800372 | 1.49E-48 | -1.69E-46 |
| MS.gene049259 | MS.gene38109 | 0.816203 | 6.24E-52 | -1.69E-46 |
| MS.gene049483 | MS.gene38109 | 0.807428 | 5.08E-50 | -1.69E-46 |
| MS.gene049634 | MS.gene38109 | 0.818259 | 2.15E-52 | -1.69E-46 |
| MS.gene050173 | MS.gene38109 | 0.808587 | 2.88E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene38109 | -0.83642 | 9.46E-57 | -1.69E-46 |
| MS.gene050381 | MS.gene38109 | 0.854541 | 1.15E-61 | -1.69E-46 |
| MS.gene050504 | MS.gene38109 | -0.803549 | 3.31E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene38109 | -0.818697 | 1.71E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene38109 | -0.820028 | 8.51E-53 | -1.69E-46 |
| MS.gene050883 | MS.gene38109 | 0.849113 | 3.98E-60 | -1.69E-46 |
| MS.gene051044 | MS.gene38109 | 0.821525 | 3.86E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene38109 | 0.85464 | 1.08E-61 | -1.69E-46 |
| MS.gene051138 | MS.gene38109 | 0.833698 | 4.59E-56 | -1.69E-46 |
| MS.gene05141 | MS.gene38109 | 0.81552 | 8.86E-52 | -1.69E-46 |
| MS.gene051946 | MS.gene38109 | 0.816678 | 4.88E-52 | -1.69E-46 |
| MS.gene053069 | MS.gene38109 | 0.844904 | 5.66E-59 | -1.69E-46 |
| MS.gene053420 | MS.gene38109 | 0.855491 | 6.09E-62 | -1.69E-46 |
| MS.gene053561 | MS.gene38109 | 0.837984 | 3.76E-57 | -1.69E-46 |
| MS.gene054056 | MS.gene38109 | 0.834829 | 2.39E-56 | -1.69E-46 |
| MS.gene054707 | MS.gene38109 | 0.811517 | 6.73E-51 | -1.69E-46 |
| MS.gene054708 | MS.gene38109 | 0.839041 | 2.01E-57 | -1.69E-46 |
| MS.gene055124 | MS.gene38109 | 0.872106 | 4.10E-67 | -1.69E-46 |
| MS.gene055154 | MS.gene38109 | 0.827626 | 1.41E-54 | -1.69E-46 |
| MS.gene055202 | MS.gene38109 | 0.862617 | 4.46E-64 | -1.69E-46 |
| MS.gene055942 | MS.gene38109 | 0.815298 | 9.93E-52 | -1.69E-46 |
| MS.gene056224 | MS.gene38109 | 0.807787 | 4.26E-50 | -1.69E-46 |
| MS.gene056310 | MS.gene38109 | 0.83232 | 1.01E-55 | -1.69E-46 |
| MS.gene056311 | MS.gene38109 | 0.853578 | 2.18E-61 | -1.69E-46 |
| MS.gene056313 | MS.gene38109 | 0.837646 | 4.60E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene38109 | -0.81521 | 1.04E-51 | -1.69E-46 |
| MS.gene057014 | MS.gene38109 | 0.846359 | 2.28E-59 | -1.69E-46 |
| MS.gene058093 | MS.gene38109 | 0.842427 | 2.60E-58 | -1.69E-46 |
| MS.gene058099 | MS.gene38109 | 0.84583 | 3.18E-59 | -1.69E-46 |
| MS.gene058108 | MS.gene38109 | 0.844384 | 7.82E-59 | -1.69E-46 |
| MS.gene058109 | MS.gene38109 | 0.886045 | 4.81E-72 | -1.69E-46 |
| MS.gene058111 | MS.gene38109 | 0.845735 | 3.37E-59 | -1.69E-46 |
| MS.gene058117 | MS.gene38109 | 0.829813 | 4.17E-55 | -1.69E-46 |
| MS.gene058171 | MS.gene38109 | 0.914893 | 1.12E-84 | -1.69E-46 |
| MS.gene058173 | MS.gene38109 | 0.909161 | 7.73E-82 | -1.69E-46 |
| MS.gene058175 | MS.gene38109 | 0.916835 | 1.10E-85 | -1.69E-46 |
| MS.gene058268 | MS.gene38109 | 0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene058493 | MS.gene38109 | 0.834975 | 2.20E-56 | -1.69E-46 |
| MS.gene058494 | MS.gene38109 | 0.827154 | 1.83E-54 | -1.69E-46 |
| MS.gene058496 | MS.gene38109 | 0.801066 | 1.07E-48 | -1.69E-46 |
| MS.gene05884 | MS.gene38109 | 0.813665 | 2.28E-51 | -1.69E-46 |
| MS.gene059037 | MS.gene38109 | 0.811372 | 7.24E-51 | -1.69E-46 |
| MS.gene059045 | MS.gene38109 | 0.862984 | 3.44E-64 | -1.69E-46 |
| MS.gene059223 | MS.gene38109 | 0.814803 | 1.28E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene38109 | -0.813239 | 2.83E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene38109 | 0.82582 | 3.80E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38109.t1 | MTR_5g098170 | 98.066 | 362 | 6 | 1 | 1 | 362 | 5 | 365 | 0.0 | 736 |
| MS.gene38109.t1 | MTR_3g092900 | 68.376 | 351 | 110 | 1 | 10 | 360 | 14 | 363 | 0.0 | 523 |
| MS.gene38109.t1 | MTR_7g118320 | 53.501 | 357 | 161 | 3 | 7 | 360 | 8 | 362 | 6.57e-139 | 399 |
| MS.gene38109.t1 | MTR_0591s0010 | 52.632 | 361 | 168 | 2 | 2 | 360 | 18 | 377 | 1.03e-137 | 397 |
| MS.gene38109.t1 | MTR_8g068750 | 50.970 | 361 | 174 | 2 | 2 | 360 | 18 | 377 | 3.81e-135 | 390 |
| MS.gene38109.t1 | MTR_8g068690 | 51.247 | 361 | 173 | 2 | 2 | 360 | 17 | 376 | 7.78e-132 | 382 |
| MS.gene38109.t1 | MTR_7g118300 | 48.333 | 360 | 181 | 3 | 1 | 360 | 21 | 375 | 7.99e-125 | 364 |
| MS.gene38109.t1 | MTR_8g068870 | 49.859 | 355 | 175 | 2 | 8 | 360 | 10 | 363 | 1.26e-123 | 360 |
| MS.gene38109.t1 | MTR_6g078850 | 47.541 | 366 | 185 | 2 | 1 | 359 | 17 | 382 | 1.39e-121 | 360 |
| MS.gene38109.t1 | MTR_8g068570 | 49.544 | 329 | 136 | 3 | 2 | 328 | 18 | 318 | 9.84e-110 | 323 |
| MS.gene38109.t1 | MTR_8g068730 | 45.152 | 361 | 163 | 3 | 2 | 360 | 18 | 345 | 2.37e-108 | 321 |
| MS.gene38109.t1 | MTR_1g096310 | 44.915 | 354 | 190 | 5 | 11 | 360 | 20 | 372 | 4.46e-103 | 308 |
| MS.gene38109.t1 | MTR_8g024160 | 41.972 | 355 | 164 | 1 | 6 | 360 | 16 | 328 | 2.04e-100 | 300 |
| MS.gene38109.t1 | MTR_7g011900 | 42.210 | 353 | 197 | 6 | 12 | 360 | 21 | 370 | 3.43e-99 | 298 |
| MS.gene38109.t1 | MTR_7g012020 | 43.220 | 354 | 192 | 7 | 12 | 360 | 20 | 369 | 9.54e-96 | 290 |
| MS.gene38109.t1 | MTR_3g021440 | 45.125 | 359 | 185 | 9 | 8 | 360 | 18 | 370 | 7.81e-95 | 287 |
| MS.gene38109.t1 | MTR_7g012090 | 43.137 | 357 | 193 | 6 | 12 | 360 | 21 | 375 | 1.67e-94 | 286 |
| MS.gene38109.t1 | MTR_7g012070 | 42.577 | 357 | 195 | 6 | 12 | 360 | 21 | 375 | 1.92e-93 | 284 |
| MS.gene38109.t1 | MTR_3g021430 | 43.978 | 357 | 184 | 8 | 12 | 360 | 9 | 357 | 2.97e-93 | 283 |
| MS.gene38109.t1 | MTR_7g012040 | 43.343 | 353 | 192 | 7 | 12 | 360 | 20 | 368 | 5.73e-93 | 282 |
| MS.gene38109.t1 | MTR_7g011990 | 40.845 | 355 | 196 | 7 | 12 | 360 | 21 | 367 | 7.98e-92 | 280 |
| MS.gene38109.t1 | MTR_2g055940 | 41.477 | 352 | 200 | 6 | 12 | 360 | 15 | 363 | 3.54e-91 | 278 |
| MS.gene38109.t1 | MTR_1g036490 | 39.722 | 360 | 207 | 6 | 8 | 360 | 14 | 370 | 5.58e-91 | 277 |
| MS.gene38109.t1 | MTR_1g036460 | 40.282 | 355 | 202 | 6 | 13 | 360 | 19 | 370 | 1.26e-90 | 276 |
| MS.gene38109.t1 | MTR_8g068690 | 50.189 | 265 | 129 | 2 | 2 | 264 | 17 | 280 | 3.47e-89 | 270 |
| MS.gene38109.t1 | MTR_1g036510 | 39.889 | 361 | 205 | 7 | 8 | 360 | 28 | 384 | 4.00e-87 | 268 |
| MS.gene38109.t1 | MTR_8g068740 | 45.324 | 278 | 115 | 4 | 2 | 276 | 18 | 261 | 2.05e-76 | 237 |
| MS.gene38109.t1 | MTR_8g068600 | 50.218 | 229 | 111 | 2 | 37 | 263 | 27 | 254 | 5.65e-76 | 236 |
| MS.gene38109.t1 | MTR_2g072790 | 35.977 | 353 | 217 | 6 | 11 | 360 | 8 | 354 | 3.36e-70 | 223 |
| MS.gene38109.t1 | MTR_3g096050 | 35.262 | 363 | 227 | 5 | 1 | 360 | 1 | 358 | 6.01e-68 | 218 |
| MS.gene38109.t1 | MTR_7g012020 | 45.490 | 255 | 132 | 5 | 12 | 262 | 20 | 271 | 1.32e-67 | 215 |
| MS.gene38109.t1 | MTR_0017s0100 | 35.043 | 351 | 210 | 9 | 1 | 346 | 17 | 354 | 4.54e-67 | 216 |
| MS.gene38109.t1 | MTR_0079s0070 | 38.532 | 327 | 173 | 11 | 32 | 346 | 10 | 320 | 7.60e-67 | 214 |
| MS.gene38109.t1 | MTR_4g038440 | 36.313 | 358 | 196 | 12 | 1 | 346 | 17 | 354 | 1.26e-66 | 215 |
| MS.gene38109.t1 | MTR_3g083620 | 37.383 | 321 | 184 | 9 | 31 | 346 | 39 | 347 | 5.44e-63 | 205 |
| MS.gene38109.t1 | MTR_1g050220 | 35.455 | 330 | 159 | 8 | 19 | 344 | 8 | 287 | 8.77e-61 | 197 |
| MS.gene38109.t1 | MTR_3g096070 | 34.711 | 363 | 206 | 7 | 1 | 360 | 1 | 335 | 3.83e-60 | 197 |
| MS.gene38109.t1 | MTR_7g012020 | 44.068 | 236 | 125 | 5 | 12 | 243 | 20 | 252 | 3.91e-58 | 189 |
| MS.gene38109.t1 | MTR_1g036510 | 37.308 | 260 | 156 | 4 | 8 | 262 | 28 | 285 | 1.60e-53 | 179 |
| MS.gene38109.t1 | MTR_1g076940 | 35.077 | 325 | 195 | 8 | 30 | 346 | 31 | 347 | 2.88e-50 | 172 |
| MS.gene38109.t1 | MTR_5g074600 | 32.099 | 324 | 206 | 8 | 30 | 347 | 31 | 346 | 2.32e-48 | 167 |
| MS.gene38109.t1 | MTR_5g074680 | 31.385 | 325 | 207 | 10 | 30 | 347 | 32 | 347 | 2.00e-47 | 164 |
| MS.gene38109.t1 | MTR_5g074580 | 30.675 | 326 | 208 | 8 | 30 | 347 | 32 | 347 | 8.33e-46 | 160 |
| MS.gene38109.t1 | MTR_3g096050 | 35.985 | 264 | 162 | 4 | 1 | 262 | 1 | 259 | 8.57e-45 | 155 |
| MS.gene38109.t1 | MTR_7g014510 | 32.416 | 327 | 199 | 8 | 30 | 347 | 31 | 344 | 5.36e-44 | 155 |
| MS.gene38109.t1 | MTR_4g079160 | 31.902 | 326 | 201 | 10 | 30 | 347 | 30 | 342 | 8.57e-44 | 155 |
| MS.gene38109.t1 | MTR_1g036510 | 35.470 | 234 | 144 | 4 | 13 | 241 | 33 | 264 | 2.15e-43 | 151 |
| MS.gene38109.t1 | MTR_8g068620 | 61.468 | 109 | 42 | 0 | 154 | 262 | 2 | 110 | 6.35e-43 | 145 |
| MS.gene38109.t1 | MTR_7g024500 | 31.464 | 321 | 204 | 7 | 29 | 346 | 29 | 336 | 1.03e-42 | 152 |
| MS.gene38109.t1 | MTR_4g088345 | 32.099 | 324 | 203 | 8 | 29 | 346 | 30 | 342 | 4.05e-42 | 150 |
| MS.gene38109.t1 | MTR_4g088200 | 33.636 | 330 | 199 | 10 | 28 | 347 | 29 | 348 | 9.20e-42 | 150 |
| MS.gene38109.t1 | MTR_4g038440 | 37.759 | 241 | 126 | 8 | 32 | 262 | 44 | 270 | 9.61e-42 | 147 |
| MS.gene38109.t1 | MTR_7g014570 | 32.416 | 327 | 194 | 8 | 30 | 347 | 31 | 339 | 3.07e-41 | 148 |
| MS.gene38109.t1 | MTR_5g074540 | 31.402 | 328 | 185 | 11 | 30 | 347 | 31 | 328 | 3.93e-41 | 147 |
| MS.gene38109.t1 | MTR_7g024520 | 32.609 | 322 | 199 | 8 | 29 | 346 | 29 | 336 | 6.50e-41 | 147 |
| MS.gene38109.t1 | MTR_4g088340 | 30.556 | 324 | 208 | 8 | 29 | 346 | 7 | 319 | 8.94e-40 | 144 |
| MS.gene38109.t1 | MTR_4g033150 | 32.733 | 333 | 205 | 12 | 30 | 351 | 31 | 355 | 1.49e-37 | 139 |
| MS.gene38109.t1 | MTR_5g074610 | 41.026 | 156 | 88 | 2 | 195 | 347 | 159 | 313 | 1.46e-36 | 135 |
| MS.gene38109.t1 | MTR_4g033015 | 33.533 | 334 | 201 | 12 | 30 | 351 | 31 | 355 | 8.33e-35 | 131 |
| MS.gene38109.t1 | MTR_4g033200 | 32.036 | 334 | 206 | 12 | 30 | 351 | 31 | 355 | 1.31e-34 | 130 |
| MS.gene38109.t1 | MTR_8g068760 | 53.535 | 99 | 46 | 0 | 262 | 360 | 135 | 233 | 2.53e-34 | 126 |
| MS.gene38109.t1 | MTR_8g068760 | 42.400 | 125 | 69 | 2 | 15 | 137 | 18 | 141 | 1.07e-23 | 98.2 |
| MS.gene38109.t1 | MTR_4g033170 | 33.840 | 263 | 156 | 9 | 28 | 284 | 29 | 279 | 3.37e-34 | 129 |
| MS.gene38109.t1 | MTR_4g088190 | 33.434 | 332 | 202 | 10 | 27 | 347 | 28 | 351 | 5.92e-33 | 126 |
| MS.gene38109.t1 | MTR_4g033085 | 34.375 | 256 | 150 | 9 | 30 | 279 | 31 | 274 | 5.00e-32 | 124 |
| MS.gene38109.t1 | MTR_1g076930 | 33.884 | 242 | 149 | 6 | 25 | 262 | 3 | 237 | 1.41e-31 | 119 |
| MS.gene38109.t1 | MTR_8g068580 | 54.945 | 91 | 41 | 0 | 270 | 360 | 43 | 133 | 3.41e-29 | 110 |
| MS.gene38109.t1 | MTR_8g068590 | 46.552 | 116 | 59 | 2 | 8 | 121 | 3 | 117 | 1.12e-25 | 101 |
| MS.gene38109.t1 | MTR_0794s0020 | 31.858 | 226 | 140 | 9 | 30 | 248 | 31 | 249 | 1.30e-17 | 81.6 |
| MS.gene38109.t1 | MTR_6g060280 | 49.206 | 63 | 26 | 2 | 214 | 271 | 1 | 62 | 1.40e-12 | 63.2 |
| MS.gene38109.t1 | MTR_6g060290 | 31.176 | 170 | 96 | 7 | 8 | 174 | 19 | 170 | 1.19e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38109.t1 | AT5G54160 | 62.963 | 351 | 127 | 2 | 10 | 360 | 14 | 361 | 7.42e-171 | 480 |
| MS.gene38109.t1 | AT1G77520 | 46.866 | 367 | 186 | 5 | 1 | 360 | 17 | 381 | 6.08e-115 | 339 |
| MS.gene38109.t1 | AT1G33030 | 46.154 | 351 | 174 | 5 | 18 | 361 | 9 | 351 | 3.25e-111 | 328 |
| MS.gene38109.t1 | AT1G51990 | 44.068 | 354 | 194 | 4 | 11 | 361 | 11 | 363 | 4.89e-106 | 316 |
| MS.gene38109.t1 | AT1G51990 | 43.785 | 354 | 195 | 4 | 11 | 361 | 11 | 363 | 2.52e-105 | 314 |
| MS.gene38109.t1 | AT1G77530 | 47.645 | 361 | 182 | 5 | 7 | 360 | 21 | 381 | 1.79e-100 | 302 |
| MS.gene38109.t1 | AT1G63140 | 48.256 | 344 | 169 | 5 | 25 | 360 | 39 | 381 | 1.24e-97 | 295 |
| MS.gene38109.t1 | AT1G63140 | 48.256 | 344 | 169 | 5 | 25 | 360 | 59 | 401 | 2.46e-97 | 295 |
| MS.gene38109.t1 | AT5G53810 | 45.748 | 341 | 177 | 6 | 28 | 360 | 38 | 378 | 3.70e-95 | 288 |
| MS.gene38109.t1 | AT1G21130 | 44.944 | 356 | 185 | 9 | 12 | 360 | 22 | 373 | 9.28e-95 | 287 |
| MS.gene38109.t1 | AT1G21100 | 44.444 | 360 | 188 | 9 | 9 | 360 | 18 | 373 | 8.11e-94 | 285 |
| MS.gene38109.t1 | AT1G21110 | 43.889 | 360 | 190 | 9 | 9 | 360 | 18 | 373 | 6.85e-93 | 282 |
| MS.gene38109.t1 | AT1G21120 | 44.167 | 360 | 189 | 9 | 9 | 360 | 18 | 373 | 3.12e-92 | 281 |
| MS.gene38109.t1 | AT1G21120 | 44.167 | 360 | 189 | 9 | 9 | 360 | 66 | 421 | 1.96e-91 | 280 |
| MS.gene38109.t1 | AT1G76790 | 42.978 | 356 | 184 | 8 | 19 | 362 | 19 | 367 | 4.77e-89 | 272 |
| MS.gene38109.t1 | AT5G37170 | 41.587 | 315 | 147 | 7 | 53 | 360 | 50 | 334 | 2.12e-76 | 239 |
| MS.gene38109.t1 | AT3G53140 | 36.314 | 369 | 216 | 8 | 1 | 360 | 1 | 359 | 2.32e-74 | 234 |
| MS.gene38109.t1 | AT1G33030 | 46.275 | 255 | 122 | 5 | 18 | 265 | 9 | 255 | 2.55e-74 | 231 |
| MS.gene38109.t1 | AT1G33030 | 46.429 | 252 | 120 | 5 | 18 | 262 | 9 | 252 | 1.83e-73 | 229 |
| MS.gene38109.t1 | AT5G37170 | 47.964 | 221 | 111 | 3 | 142 | 360 | 16 | 234 | 5.84e-67 | 211 |
| MS.gene38109.t1 | AT1G62900 | 53.171 | 205 | 95 | 1 | 157 | 360 | 1 | 205 | 5.62e-65 | 205 |
| MS.gene38109.t1 | AT5G37170 | 52.151 | 186 | 87 | 2 | 177 | 360 | 1 | 186 | 4.89e-62 | 197 |
| MS.gene38109.t1 | AT1G63140 | 47.347 | 245 | 121 | 4 | 25 | 262 | 59 | 302 | 2.64e-61 | 199 |
| MS.gene38109.t1 | AT1G21130 | 45.914 | 257 | 129 | 8 | 12 | 262 | 22 | 274 | 3.95e-60 | 196 |
| MS.gene38109.t1 | AT1G77530 | 46.320 | 231 | 118 | 4 | 19 | 243 | 33 | 263 | 3.14e-51 | 172 |
| MS.gene38109.t1 | AT1G63140 | 44.248 | 226 | 118 | 4 | 25 | 243 | 59 | 283 | 3.08e-48 | 165 |
| MS.gene38109.t1 | AT4G35150 | 31.285 | 358 | 182 | 11 | 4 | 346 | 2 | 310 | 8.18e-46 | 159 |
| MS.gene38109.t1 | AT4G35160 | 32.143 | 364 | 214 | 11 | 4 | 346 | 16 | 367 | 2.06e-43 | 154 |
Find 63 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAGTTCCTGACTCAAATT+TGG | 0.198979 | 5.1:+78528972 | MS.gene38109:CDS |
| AAATTAATGGCTTTAATATT+AGG | 0.210143 | 5.1:-78528431 | None:intergenic |
| ATTCCATAAGCATTGTAAAA+TGG | 0.318888 | 5.1:-78528221 | None:intergenic |
| CTAAAATCAGCTTTGGAACT+TGG | 0.326330 | 5.1:+78525846 | MS.gene38109:CDS |
| AGAGAAAGAGTTTGAGGCTT+TGG | 0.327658 | 5.1:+78529062 | MS.gene38109:CDS |
| ATGGGGCAAGTCAAAATTAA+TGG | 0.344745 | 5.1:-78528444 | None:intergenic |
| GAAGATGAAAGGTGAGCATT+TGG | 0.346978 | 5.1:-78525897 | None:intergenic |
| AAAGTTCTTGAGACATATTC+AGG | 0.350312 | 5.1:+78528332 | MS.gene38109:CDS |
| GGACCGATTATTGCGTCTAT+TGG | 0.359684 | 5.1:+78525974 | MS.gene38109:CDS |
| AAATTTGAGTCAGGAACTAT+TGG | 0.365050 | 5.1:-78528970 | None:intergenic |
| AATGGTTCTAAAATCAGCTT+TGG | 0.388431 | 5.1:+78525839 | MS.gene38109:CDS |
| GATTCTATTGAAAGGCTCTA+TGG | 0.399724 | 5.1:+78526041 | MS.gene38109:CDS |
| GTTGATGTTGGTGGTGGAAC+TGG | 0.407689 | 5.1:+78528377 | MS.gene38109:CDS |
| CTTGGATCTATTGTTGATGT+TGG | 0.408159 | 5.1:+78528365 | MS.gene38109:CDS |
| GTGAGCATTTGGACCAGCTT+TGG | 0.412821 | 5.1:-78525886 | None:intergenic |
| GATGTTGAATGGAGCAAGTA+AGG | 0.417684 | 5.1:-78526010 | None:intergenic |
| GAGTTTGAGGCTTTGGCTAA+AGG | 0.425332 | 5.1:+78529069 | MS.gene38109:CDS |
| TTTGAGGCCAAATTTGAGTC+AGG | 0.429615 | 5.1:-78528979 | None:intergenic |
| GAGAACAGAGAAAGAGTTTG+AGG | 0.430797 | 5.1:+78529056 | MS.gene38109:CDS |
| TATCATACCACATGTCTTTG+AGG | 0.434430 | 5.1:-78526148 | None:intergenic |
| AATAATCGGTCCAACATAGA+AGG | 0.446180 | 5.1:-78525963 | None:intergenic |
| AGGTGCTTCTGCTGCTCCAA+TGG | 0.449418 | 5.1:+78525821 | MS.gene38109:CDS |
| CATGAGAAATGAAGAAATCA+TGG | 0.451767 | 5.1:-78526111 | None:intergenic |
| ATCTCCATCTTGATGTTGAA+TGG | 0.454950 | 5.1:-78526021 | None:intergenic |
| TGAACCTTTGATCTGTGCTA+TGG | 0.464990 | 5.1:-78528259 | None:intergenic |
| GAGGCTTTGGCTAAAGGAGC+TGG | 0.467803 | 5.1:+78529075 | MS.gene38109:CDS |
| TCCAACATAGAAGGTGCATC+TGG | 0.468392 | 5.1:-78525954 | None:intergenic |
| GGATCTATTGTTGATGTTGG+TGG | 0.469175 | 5.1:+78528368 | MS.gene38109:CDS |
| CTCAAAATCTGTGTTTCAAA+TGG | 0.473479 | 5.1:+78528996 | MS.gene38109:CDS |
| TGCAGTGGATATGTCATGAT+TGG | 0.478958 | 5.1:+78528860 | MS.gene38109:intron |
| AACATGCAATTTGAAAGCCT+TGG | 0.486404 | 5.1:-78529101 | None:intergenic |
| TAGCCAATAGACGCAATAAT+CGG | 0.495304 | 5.1:-78525977 | None:intergenic |
| TATGATTCTCTTCCTGCCAC+AGG | 0.496294 | 5.1:+78528919 | MS.gene38109:CDS |
| ATCATATTATGTCATAGCTC+AGG | 0.508312 | 5.1:+78529024 | MS.gene38109:CDS |
| GATTGAGAAAATGGAGAGGG+AGG | 0.515664 | 5.1:+78525743 | None:intergenic |
| GCTAAAGGAGCTGGATTCCA+AGG | 0.517739 | 5.1:+78529084 | MS.gene38109:CDS |
| TCTATTGTTGATGTTGGTGG+TGG | 0.520573 | 5.1:+78528371 | MS.gene38109:CDS |
| TCCAGATGCACCTTCTATGT+TGG | 0.524280 | 5.1:+78525953 | MS.gene38109:CDS |
| TGACAAAATATTTAGCAAGA+GGG | 0.538272 | 5.1:-78526070 | None:intergenic |
| ATTGAAATTATAGCCAAAGC+TGG | 0.539441 | 5.1:+78525873 | MS.gene38109:CDS |
| TGCTTTCAACATGTATGTCA+TGG | 0.549160 | 5.1:+78529125 | MS.gene38109:CDS |
| TTGACAAAATATTTAGCAAG+AGG | 0.550700 | 5.1:-78526071 | None:intergenic |
| TATGATTGAGAAAATGGAGA+GGG | 0.552370 | 5.1:+78525740 | None:intergenic |
| AATGAAGCACCATCTTATCC+AGG | 0.555315 | 5.1:+78528473 | MS.gene38109:CDS |
| CATAAGCATTGTAAAATGGA+AGG | 0.564270 | 5.1:-78528217 | None:intergenic |
| CTTGACAGATTCAATTCAAG+AGG | 0.570124 | 5.1:+78528190 | MS.gene38109:CDS |
| AATTCCATAGCACAGATCAA+AGG | 0.585262 | 5.1:+78528255 | MS.gene38109:CDS |
| AAGCAATGTTTGAAGATGAA+AGG | 0.586408 | 5.1:-78525908 | None:intergenic |
| TGCTCCATTCAACATCAAGA+TGG | 0.592118 | 5.1:+78526017 | MS.gene38109:CDS |
| AAGATGGAGATTCTATTGAA+AGG | 0.592482 | 5.1:+78526033 | MS.gene38109:CDS |
| ATGGTGCTTCATTAATGACA+TGG | 0.597662 | 5.1:-78528463 | None:intergenic |
| TGGTGCTTCATTAATGACAT+GGG | 0.597930 | 5.1:-78528462 | None:intergenic |
| GTAGGTGTGGAACATGTTGG+TGG | 0.603445 | 5.1:+78528690 | MS.gene38109:intron |
| GGTGTAGGTGTGGAACATGT+TGG | 0.605628 | 5.1:+78528687 | MS.gene38109:intron |
| CTTGAATTGAATCTGTCAAG+TGG | 0.609623 | 5.1:-78528187 | None:intergenic |
| AGAAGCACCTGATAGTTCCA+TGG | 0.614474 | 5.1:-78525808 | None:intergenic |
| ACAGATTCAATTCAAGAGGG+TGG | 0.615949 | 5.1:+78528194 | MS.gene38109:CDS |
| ATATTATGTCATAGCTCAGG+TGG | 0.632364 | 5.1:+78529027 | MS.gene38109:CDS |
| ATATGATTGAGAAAATGGAG+AGG | 0.644596 | 5.1:+78525739 | None:intergenic |
| TTGACAGATTCAATTCAAGA+GGG | 0.650903 | 5.1:+78528191 | MS.gene38109:CDS |
| TGCCACAGGAAAAGTAATTG+CGG | 0.653779 | 5.1:+78528933 | MS.gene38109:CDS |
| ACAAAGTCCTCAAAGACATG+TGG | 0.674324 | 5.1:+78526141 | MS.gene38109:CDS |
| GGTGCTTCATTAATGACATG+GGG | 0.689174 | 5.1:-78528461 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATACATTAAATGT+TGG | + | chr5.1:78528618-78528637 | MS.gene38109:intron | 10.0% |
| !! | AAAATAATACATTAAATGTT+GGG | + | chr5.1:78528619-78528638 | MS.gene38109:intron | 10.0% |
| !! | TCAAAATAAATGAAATATAT+TGG | - | chr5.1:78528809-78528828 | None:intergenic | 10.0% |
| !! | TTATTTCACATTATATATTA+AGG | + | chr5.1:78528503-78528522 | MS.gene38109:intron | 10.0% |
| !!! | AGTATTATATTTTTTTTTGT+CGG | - | chr5.1:78526520-78526539 | None:intergenic | 10.0% |
| !! | AAAACAAAACAAAACAAAAA+AGG | - | chr5.1:78526674-78526693 | None:intergenic | 15.0% |
| !! | AAATAATACATTAAATGTTG+GGG | + | chr5.1:78528620-78528639 | MS.gene38109:intron | 15.0% |
| !! | ACACTTTATTATATAATTGT+AGG | + | chr5.1:78528162-78528181 | MS.gene38109:intron | 15.0% |
| !! | ATTATATAATAAAGTGTGTT+AGG | - | chr5.1:78528159-78528178 | None:intergenic | 15.0% |
| !! | TAAGAAATTGCAAAAAAAAT+TGG | - | chr5.1:78527041-78527060 | None:intergenic | 15.0% |
| !! | TATAATACTATTATAAGACT+TGG | + | chr5.1:78526531-78526550 | MS.gene38109:intron | 15.0% |
| !! | TATATAAACCTCTATAAATT+GGG | + | chr5.1:78527082-78527101 | MS.gene38109:intron | 15.0% |
| !! | TTATATAAACCTCTATAAAT+TGG | + | chr5.1:78527081-78527100 | MS.gene38109:intron | 15.0% |
| !!! | AAATTAATGGCTTTAATATT+AGG | - | chr5.1:78528434-78528453 | None:intergenic | 15.0% |
| !!! | CAATTTATTTTCTTTTAGTA+GGG | + | chr5.1:78526183-78526202 | MS.gene38109:intron | 15.0% |
| !!! | GTATTATATTTTTTTTTGTC+GGG | - | chr5.1:78526519-78526538 | None:intergenic | 15.0% |
| !!! | TAATGAGACTTTTTTTTTTA+AGG | - | chr5.1:78526855-78526874 | None:intergenic | 15.0% |
| !!! | TCAATTTATTTTCTTTTAGT+AGG | + | chr5.1:78526182-78526201 | MS.gene38109:intron | 15.0% |
| !!! | TTTTTTGTTTTGTTTTGTTT+TGG | + | chr5.1:78526673-78526692 | MS.gene38109:intron | 15.0% |
| !! | AAACAAAACAAAAAAGGAAA+AGG | - | chr5.1:78526668-78526687 | None:intergenic | 20.0% |
| !! | AAATTGCAAAAAAAATTGGT+CGG | - | chr5.1:78527037-78527056 | None:intergenic | 20.0% |
| !! | AGCATAAAACTTATTAACTA+AGG | - | chr5.1:78527345-78527364 | None:intergenic | 20.0% |
| !! | TAGAGAATAATTTCTATGAA+AGG | + | chr5.1:78527301-78527320 | MS.gene38109:intron | 20.0% |
| !! | TATCTAACCAAACAAAAATT+AGG | + | chr5.1:78528542-78528561 | MS.gene38109:intron | 20.0% |
| !!! | AAACTTGATTTTGATATGTT+TGG | + | chr5.1:78527933-78527952 | MS.gene38109:intron | 20.0% |
| !!! | ACTTATTTAGTAATTTGTGT+TGG | - | chr5.1:78526818-78526837 | None:intergenic | 20.0% |
| !!! | CACATTATATATTAAGGTTT+TGG | + | chr5.1:78528509-78528528 | MS.gene38109:intron | 20.0% |
| !!! | CTTATTTAGTAATTTGTGTT+GGG | - | chr5.1:78526817-78526836 | None:intergenic | 20.0% |
| !!! | GTCTTTTTCAAAATTAAGTT+AGG | - | chr5.1:78526618-78526637 | None:intergenic | 20.0% |
| !!! | TAGTTTGAGCTTTTAAAATA+TGG | - | chr5.1:78527722-78527741 | None:intergenic | 20.0% |
| !!! | TAGTTTTTTGAAATTAGCTA+AGG | - | chr5.1:78526587-78526606 | None:intergenic | 20.0% |
| !!! | TATTTTGTCAATAATCAAGA+TGG | + | chr5.1:78526083-78526102 | MS.gene38109:CDS | 20.0% |
| !!! | TTCAATAAGATTTTCAACAA+GGG | + | chr5.1:78528278-78528297 | MS.gene38109:CDS | 20.0% |
| !!! | TTTTCAAAATTAAGTTAGGT+TGG | - | chr5.1:78526614-78526633 | None:intergenic | 20.0% |
| ! | AAAAATTGCCCAATTTATAG+AGG | - | chr5.1:78527093-78527112 | None:intergenic | 25.0% |
| ! | AAAACAGTTAACGTATAGAT+AGG | + | chr5.1:78527884-78527903 | MS.gene38109:intron | 25.0% |
| ! | AACTTAAGATCATACTTTAG+TGG | + | chr5.1:78527765-78527784 | MS.gene38109:intron | 25.0% |
| ! | AAGCAAAGTCAAAAATAAGT+TGG | - | chr5.1:78527635-78527654 | None:intergenic | 25.0% |
| ! | AGCAAAGTCAAAAATAAGTT+GGG | - | chr5.1:78527634-78527653 | None:intergenic | 25.0% |
| ! | AGGATATGATACAATAAGTT+AGG | - | chr5.1:78526648-78526667 | None:intergenic | 25.0% |
| ! | ATGATACAATAAGTTAGGTT+GGG | - | chr5.1:78526643-78526662 | None:intergenic | 25.0% |
| ! | CAAATATTAAAAACTCCTAG+CGG | + | chr5.1:78526983-78527002 | MS.gene38109:intron | 25.0% |
| ! | GCATTCATAAAACATAAACT+TGG | - | chr5.1:78528843-78528862 | None:intergenic | 25.0% |
| ! | TAATGTCACCTTCATAAAAA+TGG | - | chr5.1:78528748-78528767 | None:intergenic | 25.0% |
| ! | TATGATACAATAAGTTAGGT+TGG | - | chr5.1:78526644-78526663 | None:intergenic | 25.0% |
| ! | TATGTCATATATGACTAACA+GGG | + | chr5.1:78527569-78527588 | MS.gene38109:intron | 25.0% |
| ! | TCAAAATCAAGTTTATGTCT+TGG | - | chr5.1:78527927-78527946 | None:intergenic | 25.0% |
| ! | TCATACTCTATGACATAAAT+GGG | - | chr5.1:78526210-78526229 | None:intergenic | 25.0% |
| ! | TGACAAAATATTTAGCAAGA+GGG | - | chr5.1:78526073-78526092 | None:intergenic | 25.0% |
| ! | TTCATACTCTATGACATAAA+TGG | - | chr5.1:78526211-78526230 | None:intergenic | 25.0% |
| ! | TTGACAAAATATTTAGCAAG+AGG | - | chr5.1:78526074-78526093 | None:intergenic | 25.0% |
| !! | AAGCTCAAACTAGTTTAATT+AGG | + | chr5.1:78527730-78527749 | MS.gene38109:intron | 25.0% |
| !! | ATTCCATAAGCATTGTAAAA+TGG | - | chr5.1:78528224-78528243 | None:intergenic | 25.0% |
| !! | GCAAAGTTTTACTCTTTTTT+TGG | - | chr5.1:78527688-78527707 | None:intergenic | 25.0% |
| !! | GTTCAATAAGATTTTCAACA+AGG | + | chr5.1:78528277-78528296 | MS.gene38109:CDS | 25.0% |
| !! | TTTATGTTTTATGAATGCAG+TGG | + | chr5.1:78528845-78528864 | MS.gene38109:intron | 25.0% |
| !!! | CATCTGGATTTTTTATAGAA+GGG | - | chr5.1:78525941-78525960 | None:intergenic | 25.0% |
| !!! | TATATATTAAGGTTTTGGAG+TGG | + | chr5.1:78528514-78528533 | MS.gene38109:intron | 25.0% |
| !!! | TGTTGTAATTTTTTTTTGCC+CGG | + | chr5.1:78527166-78527185 | MS.gene38109:intron | 25.0% |
| !!! | TTTTAGCTTTTGACATGTTT+GGG | + | chr5.1:78527974-78527993 | MS.gene38109:intron | 25.0% |
| !!! | TTTTTAGCTTTTGACATGTT+TGG | + | chr5.1:78527973-78527992 | MS.gene38109:intron | 25.0% |
| AAACTCTTACTTTACATTGG+TGG | - | chr5.1:78527271-78527290 | None:intergenic | 30.0% | |
| AAAGTTCTTGAGACATATTC+AGG | + | chr5.1:78528332-78528351 | MS.gene38109:CDS | 30.0% | |
| AAATAGATATATCCCGATTG+TGG | - | chr5.1:78527222-78527241 | None:intergenic | 30.0% | |
| AAATTTGAGTCAGGAACTAT+TGG | - | chr5.1:78528973-78528992 | None:intergenic | 30.0% | |
| AAGATGGAGATTCTATTGAA+AGG | + | chr5.1:78526033-78526052 | MS.gene38109:CDS | 30.0% | |
| AAGCAATGTTTGAAGATGAA+AGG | - | chr5.1:78525911-78525930 | None:intergenic | 30.0% | |
| AATAGTTCCTGACTCAAATT+TGG | + | chr5.1:78528972-78528991 | MS.gene38109:CDS | 30.0% | |
| ACGTGAATATAAATCGTAGA+TGG | + | chr5.1:78526361-78526380 | MS.gene38109:intron | 30.0% | |
| ATCATATTATGTCATAGCTC+AGG | + | chr5.1:78529024-78529043 | MS.gene38109:CDS | 30.0% | |
| ATGTGAAATAAAAACACACC+TGG | - | chr5.1:78528494-78528513 | None:intergenic | 30.0% | |
| ATTGAAATTATAGCCAAAGC+TGG | + | chr5.1:78525873-78525892 | MS.gene38109:CDS | 30.0% | |
| CATGAGAAATGAAGAAATCA+TGG | - | chr5.1:78526114-78526133 | None:intergenic | 30.0% | |
| CCAAAACTCTTACTTTACAT+TGG | - | chr5.1:78527274-78527293 | None:intergenic | 30.0% | |
| CTATTAGATATGAGATGAGA+TGG | - | chr5.1:78526328-78526347 | None:intergenic | 30.0% | |
| CTCAAAATCTGTGTTTCAAA+TGG | + | chr5.1:78528996-78529015 | MS.gene38109:CDS | 30.0% | |
| GAAAATCAACAACTTACTCA+CGG | - | chr5.1:78527486-78527505 | None:intergenic | 30.0% | |
| GTATGTCATATATGACTAAC+AGG | + | chr5.1:78527568-78527587 | MS.gene38109:intron | 30.0% | |
| TAAGATCATACTTTAGTGGT+AGG | + | chr5.1:78527769-78527788 | MS.gene38109:intron | 30.0% | |
| TCCTTAAGCAAACTAAAGTT+TGG | + | chr5.1:78527656-78527675 | MS.gene38109:intron | 30.0% | |
| TTGACAGATTCAATTCAAGA+GGG | + | chr5.1:78528191-78528210 | MS.gene38109:CDS | 30.0% | |
| ! | ACTATTATAAGACTTGGTCT+TGG | + | chr5.1:78526537-78526556 | MS.gene38109:intron | 30.0% |
| ! | ATAAAAATGGCATCAGCTTT+TGG | - | chr5.1:78528735-78528754 | None:intergenic | 30.0% |
| ! | ATACCTAATCATGTGAGTTT+TGG | + | chr5.1:78527379-78527398 | MS.gene38109:intron | 30.0% |
| ! | CATAAGCATTGTAAAATGGA+AGG | - | chr5.1:78528220-78528239 | None:intergenic | 30.0% |
| ! | CCAATGTAAAGTAAGAGTTT+TGG | + | chr5.1:78527271-78527290 | MS.gene38109:intron | 30.0% |
| ! | CTTCCATTTTACAATGCTTA+TGG | + | chr5.1:78528218-78528237 | MS.gene38109:CDS | 30.0% |
| ! | GCATTTGCCTAATTTTTGTT+TGG | - | chr5.1:78528552-78528571 | None:intergenic | 30.0% |
| ! | TGTTGGGGTAATATTCATTT+TGG | + | chr5.1:78528635-78528654 | MS.gene38109:intron | 30.0% |
| !! | AATGGTTCTAAAATCAGCTT+TGG | + | chr5.1:78525839-78525858 | MS.gene38109:CDS | 30.0% |
| !! | ACCAAACTTTAGTTTGCTTA+AGG | - | chr5.1:78527660-78527679 | None:intergenic | 30.0% |
| !! | CATTTGAAACACAGATTTTG+AGG | - | chr5.1:78528998-78529017 | None:intergenic | 30.0% |
| !! | TTTTTGAAGGAGACATGTTT+GGG | + | chr5.1:78528014-78528033 | MS.gene38109:intron | 30.0% |
| !!! | AAAGCTGATTTTAGAACCAT+TGG | - | chr5.1:78525840-78525859 | None:intergenic | 30.0% |
| !!! | GCATCTGGATTTTTTATAGA+AGG | - | chr5.1:78525942-78525961 | None:intergenic | 30.0% |
| !!! | GTTGTAATTTTTTTTTGCCC+GGG | + | chr5.1:78527167-78527186 | MS.gene38109:intron | 30.0% |
| !!! | TTTTTTGAAGGAGACATGTT+TGG | + | chr5.1:78528013-78528032 | MS.gene38109:intron | 30.0% |
| AAAAACACACCTGGATAAGA+TGG | - | chr5.1:78528485-78528504 | None:intergenic | 35.0% | |
| AACATGCAATTTGAAAGCCT+TGG | - | chr5.1:78529104-78529123 | None:intergenic | 35.0% | |
| AATAATCGGTCCAACATAGA+AGG | - | chr5.1:78525966-78525985 | None:intergenic | 35.0% | |
| AATTCCATAGCACAGATCAA+AGG | + | chr5.1:78528255-78528274 | MS.gene38109:CDS | 35.0% | |
| ACCCATAAAAAGTGATGAGA+GGG | + | chr5.1:78526936-78526955 | MS.gene38109:intron | 35.0% | |
| ATATTAAAAACTCCTAGCGG+CGG | + | chr5.1:78526986-78527005 | MS.gene38109:intron | 35.0% | |
| ATATTATGTCATAGCTCAGG+TGG | + | chr5.1:78529027-78529046 | MS.gene38109:CDS | 35.0% | |
| ATCTCCATCTTGATGTTGAA+TGG | - | chr5.1:78526024-78526043 | None:intergenic | 35.0% | |
| ATGAGATGAGATGGTGTATT+AGG | - | chr5.1:78526319-78526338 | None:intergenic | 35.0% | |
| ATGGGGCAAGTCAAAATTAA+TGG | - | chr5.1:78528447-78528466 | None:intergenic | 35.0% | |
| ATGGTGCTTCATTAATGACA+TGG | - | chr5.1:78528466-78528485 | None:intergenic | 35.0% | |
| CATCCAAAACTCACATGATT+AGG | - | chr5.1:78527385-78527404 | None:intergenic | 35.0% | |
| CTTGAATTGAATCTGTCAAG+TGG | - | chr5.1:78528190-78528209 | None:intergenic | 35.0% | |
| CTTGACAGATTCAATTCAAG+AGG | + | chr5.1:78528190-78528209 | MS.gene38109:CDS | 35.0% | |
| CTTGGATCTATTGTTGATGT+TGG | + | chr5.1:78528365-78528384 | MS.gene38109:CDS | 35.0% | |
| GATTCTATTGAAAGGCTCTA+TGG | + | chr5.1:78526041-78526060 | MS.gene38109:CDS | 35.0% | |
| TAGACTAAGACTCTTGTCAT+AGG | - | chr5.1:78526721-78526740 | None:intergenic | 35.0% | |
| TAGCCAATAGACGCAATAAT+CGG | - | chr5.1:78525980-78525999 | None:intergenic | 35.0% | |
| TATCATACCACATGTCTTTG+AGG | - | chr5.1:78526151-78526170 | None:intergenic | 35.0% | |
| TGCTTTCAACATGTATGTCA+TGG | + | chr5.1:78529125-78529144 | MS.gene38109:CDS | 35.0% | |
| TGGTGCTTCATTAATGACAT+GGG | - | chr5.1:78528465-78528484 | None:intergenic | 35.0% | |
| TTGGGCTAAACATAAGTCTT+TGG | - | chr5.1:78527616-78527635 | None:intergenic | 35.0% | |
| TTTGGTCACTGAATGTGTAA+CGG | + | chr5.1:78528653-78528672 | MS.gene38109:intron | 35.0% | |
| !! | CTAAAATCAGCTTTGGAACT+TGG | + | chr5.1:78525846-78525865 | MS.gene38109:CDS | 35.0% |
| !! | GAGACATATTCAGGTTTTGA+GGG | + | chr5.1:78528341-78528360 | MS.gene38109:CDS | 35.0% |
| !! | TGAGACATATTCAGGTTTTG+AGG | + | chr5.1:78528340-78528359 | MS.gene38109:CDS | 35.0% |
| !!! | AGAAGCTTTGTTTTTTGCCA+TGG | + | chr5.1:78525791-78525810 | MS.gene38109:CDS | 35.0% |
| !!! | AGCTGATGCCATTTTTATGA+AGG | + | chr5.1:78528737-78528756 | MS.gene38109:CDS | 35.0% |
| !!! | TCCCTCTCATCACTTTTTAT+GGG | - | chr5.1:78526940-78526959 | None:intergenic | 35.0% |
| !!! | TTTTTTGCCATGGAACTATC+AGG | + | chr5.1:78525801-78525820 | MS.gene38109:CDS | 35.0% |
| AAAAAAAATTGGTCGGAGCC+CGG | - | chr5.1:78527030-78527049 | None:intergenic | 40.0% | |
| ACAAAGTCCTCAAAGACATG+TGG | + | chr5.1:78526141-78526160 | MS.gene38109:CDS | 40.0% | |
| ACAGATTCAATTCAAGAGGG+TGG | + | chr5.1:78528194-78528213 | MS.gene38109:CDS | 40.0% | |
| GAAGATGAAAGGTGAGCATT+TGG | - | chr5.1:78525900-78525919 | None:intergenic | 40.0% | |
| GACCCATAAAAAGTGATGAG+AGG | + | chr5.1:78526935-78526954 | MS.gene38109:intron | 40.0% | |
| GAGAACAGAGAAAGAGTTTG+AGG | + | chr5.1:78529056-78529075 | MS.gene38109:CDS | 40.0% | |
| GATGTTGAATGGAGCAAGTA+AGG | - | chr5.1:78526013-78526032 | None:intergenic | 40.0% | |
| GGATCTATTGTTGATGTTGG+TGG | + | chr5.1:78528368-78528387 | MS.gene38109:CDS | 40.0% | |
| GGTGCTTCATTAATGACATG+GGG | - | chr5.1:78528464-78528483 | None:intergenic | 40.0% | |
| TGAACCTTTGATCTGTGCTA+TGG | - | chr5.1:78528262-78528281 | None:intergenic | 40.0% | |
| TGCAGTGGATATGTCATGAT+TGG | + | chr5.1:78528860-78528879 | MS.gene38109:intron | 40.0% | |
| TGCCACAGGAAAAGTAATTG+CGG | + | chr5.1:78528933-78528952 | MS.gene38109:CDS | 40.0% | |
| TGCTCCATTCAACATCAAGA+TGG | + | chr5.1:78526017-78526036 | MS.gene38109:CDS | 40.0% | |
| TTGATATGAGTACGTTGTCG+TGG | + | chr5.1:78527436-78527455 | MS.gene38109:intron | 40.0% | |
| ! | AATGAAGCACCATCTTATCC+AGG | + | chr5.1:78528473-78528492 | MS.gene38109:CDS | 40.0% |
| ! | AGAGAAAGAGTTTGAGGCTT+TGG | + | chr5.1:78529062-78529081 | MS.gene38109:CDS | 40.0% |
| ! | TCTATTGTTGATGTTGGTGG+TGG | + | chr5.1:78528371-78528390 | MS.gene38109:CDS | 40.0% |
| ! | TTTGAGGCCAAATTTGAGTC+AGG | - | chr5.1:78528982-78529001 | None:intergenic | 40.0% |
| !! | AACCGCAATTACTTTTCCTG+TGG | - | chr5.1:78528938-78528957 | None:intergenic | 40.0% |
| !!! | CTCCCTCTCATCACTTTTTA+TGG | - | chr5.1:78526941-78526960 | None:intergenic | 40.0% |
| !!! | TATTCAGGTTTTGAGGGTCT+TGG | + | chr5.1:78528347-78528366 | MS.gene38109:CDS | 40.0% |
| !!! | TTTTTTTGTCGGGTCATGTC+TGG | - | chr5.1:78526509-78526528 | None:intergenic | 40.0% |
| AAAAAAATTGGTCGGAGCCC+GGG | - | chr5.1:78527029-78527048 | None:intergenic | 45.0% | |
| ACAACTTACTCACGGCAACT+CGG | - | chr5.1:78527478-78527497 | None:intergenic | 45.0% | |
| ATCCCGATTGTGGAAAGTGA+CGG | - | chr5.1:78527212-78527231 | None:intergenic | 45.0% | |
| CACTGAATGTGTAACGGTGT+CGG | + | chr5.1:78528659-78528678 | MS.gene38109:intron | 45.0% | |
| CCAGGATTATTGTAAAGCCC+GGG | - | chr5.1:78527187-78527206 | None:intergenic | 45.0% | |
| GCCAGGATTATTGTAAAGCC+CGG | - | chr5.1:78527188-78527207 | None:intergenic | 45.0% | |
| GGACCGATTATTGCGTCTAT+TGG | + | chr5.1:78525974-78525993 | MS.gene38109:CDS | 45.0% | |
| TATGATTCTCTTCCTGCCAC+AGG | + | chr5.1:78528919-78528938 | MS.gene38109:CDS | 45.0% | |
| TCCAGATGCACCTTCTATGT+TGG | + | chr5.1:78525953-78525972 | MS.gene38109:CDS | 45.0% | |
| ! | GAGTTTGAGGCTTTGGCTAA+AGG | + | chr5.1:78529069-78529088 | MS.gene38109:CDS | 45.0% |
| ! | TCCAACATAGAAGGTGCATC+TGG | - | chr5.1:78525957-78525976 | None:intergenic | 45.0% |
| !! | AGAAGCACCTGATAGTTCCA+TGG | - | chr5.1:78525811-78525830 | None:intergenic | 45.0% |
| !! | GCAATTACTTTTCCTGTGGC+AGG | - | chr5.1:78528934-78528953 | None:intergenic | 45.0% |
| !!! | TTTTAATTTTATTTTTTTGA+AGG | + | chr5.1:78528001-78528020 | MS.gene38109:intron | 5.0% |
| AAAAAATTGGTCGGAGCCCG+GGG | - | chr5.1:78527028-78527047 | None:intergenic | 50.0% | |
| CCCGGGCTTTACAATAATCC+TGG | + | chr5.1:78527184-78527203 | MS.gene38109:intron | 50.0% | |
| GCTAAAGGAGCTGGATTCCA+AGG | + | chr5.1:78529084-78529103 | MS.gene38109:CDS | 50.0% | |
| GGTGTAGGTGTGGAACATGT+TGG | + | chr5.1:78528687-78528706 | MS.gene38109:intron | 50.0% | |
| GTAGGTGTGGAACATGTTGG+TGG | + | chr5.1:78528690-78528709 | MS.gene38109:intron | 50.0% | |
| GTGAGCATTTGGACCAGCTT+TGG | - | chr5.1:78525889-78525908 | None:intergenic | 50.0% | |
| ! | CTCCGTCACTTTCCACAATC+GGG | + | chr5.1:78527207-78527226 | MS.gene38109:intron | 50.0% |
| ! | GCTCCGTCACTTTCCACAAT+CGG | + | chr5.1:78527206-78527225 | MS.gene38109:intron | 50.0% |
| !! | GTTGATGTTGGTGGTGGAAC+TGG | + | chr5.1:78528377-78528396 | MS.gene38109:CDS | 50.0% |
| AACTCCTAGCGGCGGTTCTA+TGG | + | chr5.1:78526994-78527013 | MS.gene38109:intron | 55.0% | |
| AGGTGCTTCTGCTGCTCCAA+TGG | + | chr5.1:78525821-78525840 | MS.gene38109:CDS | 55.0% | |
| ! | GAGGCTTTGGCTAAAGGAGC+TGG | + | chr5.1:78529075-78529094 | MS.gene38109:CDS | 55.0% |
| ! | TTGTGGAAAGTGACGGAGCC+AGG | - | chr5.1:78527205-78527224 | None:intergenic | 55.0% |
| !! | TGTGTAACGGTGTCGGTGTC+TGG | + | chr5.1:78528666-78528685 | MS.gene38109:intron | 55.0% |
| ! | GTCGGTGTCTGGTGTAGGTG+TGG | + | chr5.1:78528677-78528696 | MS.gene38109:intron | 60.0% |
| !! | ACGGTGTCGGTGTCTGGTGT+AGG | + | chr5.1:78528672-78528691 | MS.gene38109:intron | 60.0% |
| CTAGCGGCGGTTCTATGGCC+CGG | + | chr5.1:78526999-78527018 | MS.gene38109:intron | 65.0% | |
| TAGCGGCGGTTCTATGGCCC+GGG | + | chr5.1:78527000-78527019 | MS.gene38109:intron | 65.0% | |
| AGCGGCGGTTCTATGGCCCG+GGG | + | chr5.1:78527001-78527020 | MS.gene38109:intron | 70.0% | |
| CGGGCCATAGAACCGCCGCT+AGG | - | chr5.1:78527001-78527020 | None:intergenic | 70.0% | |
| GTTCTATGGCCCGGGGACCC+CGG | + | chr5.1:78527008-78527027 | MS.gene38109:intron | 70.0% | |
| TTCTATGGCCCGGGGACCCC+GGG | + | chr5.1:78527009-78527028 | MS.gene38109:intron | 70.0% | |
| ! | TGGTCGGAGCCCGGGGTCCC+CGG | - | chr5.1:78527021-78527040 | None:intergenic | 80.0% |
| ! | GGTCGGAGCCCGGGGTCCCC+GGG | - | chr5.1:78527020-78527039 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 78525753 | 78529167 | 78525753 | ID=MS.gene38109 |
| chr5.1 | mRNA | 78525753 | 78529167 | 78525753 | ID=MS.gene38109.t1;Parent=MS.gene38109 |
| chr5.1 | exon | 78525753 | 78526162 | 78525753 | ID=MS.gene38109.t1.exon1;Parent=MS.gene38109.t1 |
| chr5.1 | CDS | 78525753 | 78526162 | 78525753 | ID=cds.MS.gene38109.t1;Parent=MS.gene38109.t1 |
| chr5.1 | exon | 78528184 | 78528494 | 78528184 | ID=MS.gene38109.t1.exon2;Parent=MS.gene38109.t1 |
| chr5.1 | CDS | 78528184 | 78528494 | 78528184 | ID=cds.MS.gene38109.t1;Parent=MS.gene38109.t1 |
| chr5.1 | exon | 78528694 | 78528758 | 78528694 | ID=MS.gene38109.t1.exon3;Parent=MS.gene38109.t1 |
| chr5.1 | CDS | 78528694 | 78528758 | 78528694 | ID=cds.MS.gene38109.t1;Parent=MS.gene38109.t1 |
| chr5.1 | exon | 78528865 | 78529167 | 78528865 | ID=MS.gene38109.t1.exon4;Parent=MS.gene38109.t1 |
| chr5.1 | CDS | 78528865 | 78529167 | 78528865 | ID=cds.MS.gene38109.t1;Parent=MS.gene38109.t1 |
| Gene Sequence |
| Protein sequence |
