Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38561.t1 | RHN70313.1 | 98.8 | 324 | 4 | 0 | 1 | 324 | 703 | 1026 | 9.90E-155 | 556.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38561.t1 | A0A068FIK2 | 66.4 | 324 | 105 | 2 | 3 | 322 | 708 | 1031 | 2.3e-112 | 406.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38561.t1 | G7J6Z1 | 98.8 | 324 | 4 | 0 | 1 | 324 | 702 | 1025 | 7.1e-155 | 556.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene38561 | 0.810556 | 1.09E-50 | -1.69E-46 |
| MS.gene049190 | MS.gene38561 | 0.809115 | 2.22E-50 | -1.69E-46 |
| MS.gene049350 | MS.gene38561 | 0.811963 | 5.38E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene38561 | 0.806633 | 7.48E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene38561 | 0.818334 | 2.07E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene38561 | 0.828324 | 9.58E-55 | -1.69E-46 |
| MS.gene049887 | MS.gene38561 | 0.82734 | 1.65E-54 | -1.69E-46 |
| MS.gene050586 | MS.gene38561 | 0.800054 | 1.73E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene38561 | 0.84117 | 5.59E-58 | -1.69E-46 |
| MS.gene050808 | MS.gene38561 | 0.820225 | 7.67E-53 | -1.69E-46 |
| MS.gene050901 | MS.gene38561 | 0.816459 | 5.47E-52 | -1.69E-46 |
| MS.gene051018 | MS.gene38561 | 0.812705 | 3.71E-51 | -1.69E-46 |
| MS.gene051021 | MS.gene38561 | 0.807866 | 4.10E-50 | -1.69E-46 |
| MS.gene051102 | MS.gene38561 | 0.800219 | 1.60E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene38561 | 0.818138 | 2.29E-52 | -1.69E-46 |
| MS.gene051328 | MS.gene38561 | 0.818123 | 2.31E-52 | -1.69E-46 |
| MS.gene051388 | MS.gene38561 | 0.828448 | 8.94E-55 | -1.69E-46 |
| MS.gene05157 | MS.gene38561 | 0.842094 | 3.19E-58 | -1.69E-46 |
| MS.gene051719 | MS.gene38561 | 0.872709 | 2.58E-67 | -1.69E-46 |
| MS.gene051720 | MS.gene38561 | 0.867824 | 1.03E-65 | -1.69E-46 |
| MS.gene052020 | MS.gene38561 | 0.8246 | 7.39E-54 | -1.69E-46 |
| MS.gene052133 | MS.gene38561 | 0.841502 | 4.57E-58 | -1.69E-46 |
| MS.gene052516 | MS.gene38561 | 0.831795 | 1.36E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene38561 | 0.862471 | 4.95E-64 | -1.69E-46 |
| MS.gene052731 | MS.gene38561 | 0.814473 | 1.51E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene38561 | 0.874397 | 6.97E-68 | -1.69E-46 |
| MS.gene052896 | MS.gene38561 | 0.817011 | 4.11E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene38561 | 0.900264 | 8.72E-78 | -1.69E-46 |
| MS.gene053164 | MS.gene38561 | 0.81124 | 7.73E-51 | -1.69E-46 |
| MS.gene053174 | MS.gene38561 | 0.842679 | 2.23E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene38561 | 0.813637 | 2.31E-51 | -1.69E-46 |
| MS.gene053536 | MS.gene38561 | 0.801618 | 8.27E-49 | -1.69E-46 |
| MS.gene053538 | MS.gene38561 | 0.802706 | 4.94E-49 | -1.69E-46 |
| MS.gene053563 | MS.gene38561 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene053581 | MS.gene38561 | 0.866777 | 2.23E-65 | -1.69E-46 |
| MS.gene053599 | MS.gene38561 | 0.807057 | 6.09E-50 | -1.69E-46 |
| MS.gene054550 | MS.gene38561 | 0.834061 | 3.73E-56 | -1.69E-46 |
| MS.gene054584 | MS.gene38561 | 0.898742 | 3.94E-77 | -1.69E-46 |
| MS.gene055144 | MS.gene38561 | 0.833929 | 4.02E-56 | -1.69E-46 |
| MS.gene055465 | MS.gene38561 | 0.889987 | 1.48E-73 | -1.69E-46 |
| MS.gene055466 | MS.gene38561 | 0.879925 | 8.36E-70 | -1.69E-46 |
| MS.gene055467 | MS.gene38561 | 0.80071 | 1.27E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene38561 | 0.888711 | 4.63E-73 | -1.69E-46 |
| MS.gene055469 | MS.gene38561 | 0.859074 | 5.32E-63 | -1.69E-46 |
| MS.gene055512 | MS.gene38561 | 0.806151 | 9.46E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene38561 | 0.87634 | 1.51E-68 | -1.69E-46 |
| MS.gene055580 | MS.gene38561 | -0.876545 | 1.28E-68 | -1.69E-46 |
| MS.gene055764 | MS.gene38561 | 0.80675 | 7.07E-50 | -1.69E-46 |
| MS.gene055890 | MS.gene38561 | 0.824989 | 5.99E-54 | -1.69E-46 |
| MS.gene055891 | MS.gene38561 | 0.841638 | 4.21E-58 | -1.69E-46 |
| MS.gene056005 | MS.gene38561 | 0.810794 | 9.65E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene38561 | -0.865231 | 6.86E-65 | -1.69E-46 |
| MS.gene056308 | MS.gene38561 | 0.824206 | 9.15E-54 | -1.69E-46 |
| MS.gene056368 | MS.gene38561 | 0.810973 | 8.83E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene38561 | 0.837116 | 6.28E-57 | -1.69E-46 |
| MS.gene056584 | MS.gene38561 | 0.825031 | 5.85E-54 | -1.69E-46 |
| MS.gene056959 | MS.gene38561 | 0.80738 | 5.20E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene38561 | 0.806065 | 9.86E-50 | -1.69E-46 |
| MS.gene058087 | MS.gene38561 | 0.843379 | 1.45E-58 | -1.69E-46 |
| MS.gene058339 | MS.gene38561 | 0.807729 | 4.38E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene38561 | 0.81361 | 2.35E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene38561 | 0.840802 | 6.98E-58 | -1.69E-46 |
| MS.gene058945 | MS.gene38561 | 0.828874 | 7.05E-55 | -1.69E-46 |
| MS.gene059015 | MS.gene38561 | 0.805207 | 1.49E-49 | -1.69E-46 |
| MS.gene059154 | MS.gene38561 | 0.809858 | 1.54E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene38561 | 0.812906 | 3.35E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene38561 | 0.806753 | 7.06E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene38561 | 0.80616 | 9.41E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene38561 | 0.831387 | 1.72E-55 | -1.69E-46 |
| MS.gene060519 | MS.gene38561 | 0.826837 | 2.18E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene38561 | 0.853536 | 2.24E-61 | -1.69E-46 |
| MS.gene060603 | MS.gene38561 | 0.811265 | 7.63E-51 | -1.69E-46 |
| MS.gene060884 | MS.gene38561 | 0.833309 | 5.74E-56 | -1.69E-46 |
| MS.gene060886 | MS.gene38561 | 0.833818 | 4.29E-56 | -1.69E-46 |
| MS.gene061006 | MS.gene38561 | 0.81104 | 8.54E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATACTGTCTCAATGAATT+TGG | 0.215767 | 3.1:+81212196 | None:intergenic |
| CATAGATTGAAGCAAATTCT+TGG | 0.310509 | 3.1:+81213810 | None:intergenic |
| AACAATAATCTTACAGAAGC+TGG | 0.319290 | 3.1:+81213269 | None:intergenic |
| CATTTGTAGATCAGGGTAGA+AGG | 0.346446 | 3.1:-81212081 | MS.gene38561:CDS |
| ACAAATGGAAATGGAACAAA+TGG | 0.365198 | 3.1:-81214576 | MS.gene38561:CDS |
| GCAAATCCATTCTTCCCTCT+TGG | 0.370375 | 3.1:+81214152 | None:intergenic |
| CACTTTCCAGTTGCAACAAA+TGG | 0.372092 | 3.1:-81214591 | None:intergenic |
| CAATCTATGTTTAACTCTGT+TGG | 0.373869 | 3.1:-81213796 | MS.gene38561:CDS |
| CATTGCTACAAGTGAATTAG+AGG | 0.375403 | 3.1:+81213918 | None:intergenic |
| CCAGTTGCAACAAATGGAAA+TGG | 0.382635 | 3.1:-81214585 | None:intergenic |
| ATCGGCATCATTTGTAGATC+AGG | 0.383970 | 3.1:-81212089 | MS.gene38561:CDS |
| TTCATTGACAGCTGCCCAAT+GGG | 0.397468 | 3.1:+81211978 | None:intergenic |
| CCTCTCTCGCTCTTCTGCTT+CGG | 0.410732 | 3.1:+81213882 | None:intergenic |
| GCAATTGTAGGACAAGCTTC+TGG | 0.428631 | 3.1:-81211948 | MS.gene38561:CDS |
| GGTGTATATTTGAGTTGTCT+TGG | 0.435170 | 3.1:+81212139 | None:intergenic |
| GACAAGCTTCTGGCAAGTTA+TGG | 0.439848 | 3.1:-81211938 | MS.gene38561:CDS |
| TGGAATCAGTTGCGCTCAAT+GGG | 0.440987 | 3.1:-81213838 | MS.gene38561:CDS |
| TTGGAATCAGTTGCGCTCAA+TGG | 0.445298 | 3.1:-81213839 | MS.gene38561:CDS |
| CCGAAGCAGAAGAGCGAGAG+AGG | 0.447265 | 3.1:-81213882 | MS.gene38561:CDS |
| ATATCAACAGGTGCCAACTC+TGG | 0.448213 | 3.1:-81213433 | MS.gene38561:intron |
| CATGTCACCAAGTGCAAGAA+TGG | 0.449209 | 3.1:-81213977 | MS.gene38561:CDS |
| TATACACCAGGGGTTGCTAA+TGG | 0.462117 | 3.1:-81212124 | MS.gene38561:CDS |
| TGTAAATGAGTTTGCTGCTA+AGG | 0.465290 | 3.1:-81214186 | MS.gene38561:CDS |
| GATCAAATCAAAGAACTTGT+CGG | 0.470192 | 3.1:-81213380 | MS.gene38561:CDS |
| AGTGGCTATTGCAATTCAAA+TGG | 0.470995 | 3.1:-81211893 | MS.gene38561:CDS |
| TATTTGAGTTGTCTTGGTAC+TGG | 0.472357 | 3.1:+81212145 | None:intergenic |
| CTCATTTACATGCTTCAGAA+TGG | 0.473414 | 3.1:+81214199 | None:intergenic |
| TGCACTTGGTGACATGGAGG+AGG | 0.477010 | 3.1:+81213984 | None:intergenic |
| CTCTAATTCACTTGTAGCAA+TGG | 0.478035 | 3.1:-81213917 | MS.gene38561:CDS |
| TTTCATTGACAGCTGCCCAA+TGG | 0.482398 | 3.1:+81211977 | None:intergenic |
| AATCCATTCTTCCCTCTTGG+AGG | 0.483296 | 3.1:+81214155 | None:intergenic |
| ATCAATTCTGAAAGTTTCCA+TGG | 0.484290 | 3.1:+81211858 | None:intergenic |
| GAGGGAAGAATGGATTTGCC+AGG | 0.485980 | 3.1:-81214148 | MS.gene38561:intron |
| GTGATCAAGCCACCGTTGTA+AGG | 0.491765 | 3.1:+81214399 | None:intergenic |
| ACAATAATCTTACAGAAGCT+GGG | 0.498556 | 3.1:+81213270 | None:intergenic |
| CATTCTTGCACTTGGTGACA+TGG | 0.500172 | 3.1:+81213978 | None:intergenic |
| ATTCTCGCCATTCTTGCACT+TGG | 0.504488 | 3.1:+81213970 | None:intergenic |
| CCATGTCCTTCTCCCAGAGT+TGG | 0.505519 | 3.1:+81213420 | None:intergenic |
| TATCAACAGGTGCCAACTCT+GGG | 0.509252 | 3.1:-81213432 | MS.gene38561:intron |
| TAATGGCTTAACGAGGGAAT+CGG | 0.512593 | 3.1:-81212107 | MS.gene38561:CDS |
| CAGGCGAGCTGCCCTTGCAG+AGG | 0.521102 | 3.1:-81214228 | MS.gene38561:CDS |
| AGTCCTCCAAGAGGGAAGAA+TGG | 0.528374 | 3.1:-81214158 | MS.gene38561:CDS |
| CTTGGTACTGGTACAGACAT+TGG | 0.530252 | 3.1:+81212157 | None:intergenic |
| TATTTCAGATGAAACCCATT+GGG | 0.533764 | 3.1:-81211992 | MS.gene38561:intron |
| GAATGGCTAGCTCCTCTGCA+AGG | 0.537326 | 3.1:+81214216 | None:intergenic |
| GAGAGCAAGACCGCGCTCAC+AGG | 0.539330 | 3.1:-81211811 | MS.gene38561:CDS |
| TTATTTCAGATGAAACCCAT+TGG | 0.551898 | 3.1:-81211993 | MS.gene38561:intron |
| GTAAATGAGTTTGCTGCTAA+GGG | 0.556725 | 3.1:-81214185 | MS.gene38561:CDS |
| CATTCACTAATCGCGGACGT+TGG | 0.560068 | 3.1:-81213858 | MS.gene38561:CDS |
| CCAACTCTGGGAGAAGGACA+TGG | 0.564711 | 3.1:-81213420 | MS.gene38561:CDS |
| AATGGAAGTGGCAGAAACCA+TGG | 0.568916 | 3.1:-81211875 | MS.gene38561:CDS |
| CGAAGCAGAAGAGCGAGAGA+GGG | 0.578566 | 3.1:-81213881 | MS.gene38561:CDS |
| TGGAAATGGAACAAATGGGC+AGG | 0.579334 | 3.1:-81214571 | MS.gene38561:intron |
| GCAAAGTGAGATGAAGAGAA+AGG | 0.580629 | 3.1:-81213348 | MS.gene38561:CDS |
| TATTGCAATTCAAATGGAAG+TGG | 0.581195 | 3.1:-81211887 | MS.gene38561:CDS |
| GTTAAGCCATTAGCAACCCC+TGG | 0.582771 | 3.1:+81212118 | None:intergenic |
| CTTCTGGCAAGTTATGGAGG+TGG | 0.588190 | 3.1:-81211932 | MS.gene38561:CDS |
| ATTTGTAGATCAGGGTAGAA+GGG | 0.588611 | 3.1:-81212080 | MS.gene38561:intron |
| GAAGAGAAAGGAAACTGAGA+AGG | 0.598657 | 3.1:-81213336 | MS.gene38561:CDS |
| TGATCACGAACTAGAAGTCA+TGG | 0.602570 | 3.1:-81214383 | MS.gene38561:CDS |
| ATAAAATATCACATGATGTG+TGG | 0.603767 | 3.1:+81211783 | None:intergenic |
| CAATAATCTTACAGAAGCTG+GGG | 0.604658 | 3.1:+81213271 | None:intergenic |
| CTAAAAGTGAGAGAGCAAGC+TGG | 0.606195 | 3.1:-81213311 | MS.gene38561:CDS |
| CAAATGGAAATGGAACAAAT+GGG | 0.607909 | 3.1:-81214575 | MS.gene38561:CDS |
| AATGGCTAGCTCCTCTGCAA+GGG | 0.608630 | 3.1:+81214217 | None:intergenic |
| AAGCTTCTGGCAAGTTATGG+AGG | 0.609034 | 3.1:-81211935 | MS.gene38561:CDS |
| GCAAGCTGGTGCAACCACAT+TGG | 0.610522 | 3.1:-81213297 | MS.gene38561:CDS |
| AGAAGCTGGGGTAGCCAATG+TGG | 0.617854 | 3.1:+81213283 | None:intergenic |
| AGACAACTCAAATATACACC+AGG | 0.617978 | 3.1:-81212136 | MS.gene38561:CDS |
| TTAACTCTGTTGGAGATGCT+AGG | 0.618294 | 3.1:-81213786 | MS.gene38561:intron |
| TCGGCATCATTTGTAGATCA+GGG | 0.622173 | 3.1:-81212088 | MS.gene38561:CDS |
| TGTGGCAAAGCCTGTGAGCG+CGG | 0.638368 | 3.1:+81211801 | None:intergenic |
| CAGGTGCCAACTCTGGGAGA+AGG | 0.638457 | 3.1:-81213426 | MS.gene38561:CDS |
| AGGGTCTCAGTCCTCCAAGA+GGG | 0.652294 | 3.1:-81214166 | MS.gene38561:CDS |
| CAGTATACTGAAGATATGAA+AGG | 0.653970 | 3.1:-81212181 | MS.gene38561:CDS |
| GGAAAAGAAGTCATCATCAG+TGG | 0.660783 | 3.1:-81211911 | MS.gene38561:CDS |
| TCTTGCACTTGGTGACATGG+AGG | 0.663202 | 3.1:+81213981 | None:intergenic |
| GAGAGGGCATTCACTAATCG+CGG | 0.669589 | 3.1:-81213865 | MS.gene38561:CDS |
| GGGTTGCTAATGGCTTAACG+AGG | 0.676020 | 3.1:-81212114 | MS.gene38561:CDS |
| GACAACTCAAATATACACCA+GGG | 0.681381 | 3.1:-81212135 | MS.gene38561:CDS |
| AAGGGTCTCAGTCCTCCAAG+AGG | 0.698635 | 3.1:-81214167 | MS.gene38561:CDS |
| GGTTGCTAATGGCTTAACGA+GGG | 0.700399 | 3.1:-81212113 | MS.gene38561:CDS |
| ATGAGAAGTCCTTACAACGG+TGG | 0.702195 | 3.1:-81214408 | MS.gene38561:CDS |
| ACAACTCAAATATACACCAG+GGG | 0.727631 | 3.1:-81212134 | MS.gene38561:CDS |
| GCAATGAGAAGTCCTTACAA+CGG | 0.742453 | 3.1:-81214411 | MS.gene38561:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAATAAAATTAAAATTG+AGG | - | chr3.1:81213947-81213966 | MS.gene38561:CDS | 10.0% |
| !! | AACCATAAAATAATAATTGA+TGG | + | chr3.1:81214034-81214053 | None:intergenic | 15.0% |
| !! | CTTATATTATAATTGTCATA+AGG | - | chr3.1:81214092-81214111 | MS.gene38561:intron | 15.0% |
| !! | TATGACAATTATAATATAAG+TGG | + | chr3.1:81214092-81214111 | None:intergenic | 15.0% |
| !! | TTATAATTTCATGTTATATG+AGG | + | chr3.1:81213754-81213773 | None:intergenic | 15.0% |
| !! | TTATTTAATATCACATGTAT+AGG | + | chr3.1:81211862-81211881 | None:intergenic | 15.0% |
| !!! | ATTTCACTTTTCAAATAATT+AGG | - | chr3.1:81212284-81212303 | MS.gene38561:intron | 15.0% |
| !!! | TTCCATCAATTATTATTTTA+TGG | - | chr3.1:81214029-81214048 | MS.gene38561:intron | 15.0% |
| !! | AAAAATCCTAAATCCAAATT+TGG | + | chr3.1:81213243-81213262 | None:intergenic | 20.0% |
| !! | ATAATATAAGTGGTAAAAGA+AGG | + | chr3.1:81214082-81214101 | None:intergenic | 20.0% |
| !! | ATTATTCCAAATTTGGATTT+AGG | - | chr3.1:81213234-81213253 | MS.gene38561:intron | 20.0% |
| !! | TAATATCACATGTATAGTAA+AGG | + | chr3.1:81211857-81211876 | None:intergenic | 20.0% |
| !! | TATTTGAAAAGTGAAATTGT+AGG | + | chr3.1:81212281-81212300 | None:intergenic | 20.0% |
| !!! | ATGTTTTGGTTTATTTTGAT+TGG | + | chr3.1:81213804-81213823 | None:intergenic | 20.0% |
| ! | AAGATAAAGATTGCAATATG+TGG | - | chr3.1:81212823-81212842 | MS.gene38561:intron | 25.0% |
| ! | AATCGTCGTTTATATGAAAT+TGG | - | chr3.1:81214321-81214340 | MS.gene38561:intron | 25.0% |
| ! | ACATATATAAGATTACCACT+GGG | - | chr3.1:81212706-81212725 | MS.gene38561:intron | 25.0% |
| ! | ACTCTAATAATTAAGTCTTG+AGG | + | chr3.1:81213195-81213214 | None:intergenic | 25.0% |
| ! | ATGAAAAAACTAGCAATTGT+AGG | - | chr3.1:81214412-81214431 | MS.gene38561:CDS | 25.0% |
| ! | CTTCAAGCAAAAATCAATTA+TGG | - | chr3.1:81213280-81213299 | MS.gene38561:intron | 25.0% |
| ! | GATATTGACAAGTTTATTGA+GGG | + | chr3.1:81213522-81213541 | None:intergenic | 25.0% |
| ! | TGATATTGACAAGTTTATTG+AGG | + | chr3.1:81213523-81213542 | None:intergenic | 25.0% |
| ! | TGTGAACATTATTCCAAATT+TGG | - | chr3.1:81213227-81213246 | MS.gene38561:intron | 25.0% |
| ! | TTTCAAATAATTAGGATCCT+TGG | - | chr3.1:81212292-81212311 | MS.gene38561:intron | 25.0% |
| !! | AAGTAAGAATGCTTTGAATA+GGG | - | chr3.1:81213147-81213166 | MS.gene38561:intron | 25.0% |
| !! | TATTTAGGGTATAATTGGTT+GGG | + | chr3.1:81213486-81213505 | None:intergenic | 25.0% |
| !! | TCAAGTATTTAGGGTATAAT+TGG | + | chr3.1:81213491-81213510 | None:intergenic | 25.0% |
| !! | TTCTGTCAATATTTTGTCTA+TGG | + | chr3.1:81213553-81213572 | None:intergenic | 25.0% |
| !! | TTTTATTGAGTAGCTTATAC+TGG | - | chr3.1:81212880-81212899 | MS.gene38561:intron | 25.0% |
| !!! | AAGATTATTGTTACTTTGTG+AGG | - | chr3.1:81213114-81213133 | MS.gene38561:intron | 25.0% |
| !!! | ATATCTGTGCTTCTTTTTTA+CGG | + | chr3.1:81212803-81212822 | None:intergenic | 25.0% |
| !!! | TTGGATTTAGGATTTTTCAT+GGG | - | chr3.1:81213246-81213265 | MS.gene38561:intron | 25.0% |
| !!! | TTTGGATTTAGGATTTTTCA+TGG | - | chr3.1:81213245-81213264 | MS.gene38561:intron | 25.0% |
| AAAGTTATGATGCAATCTTC+AGG | - | chr3.1:81212125-81212144 | MS.gene38561:CDS | 30.0% | |
| AACAATAATCTTACAGAAGC+TGG | + | chr3.1:81213106-81213125 | None:intergenic | 30.0% | |
| AACTAATATGAGCTTAGATC+TGG | + | chr3.1:81213347-81213366 | None:intergenic | 30.0% | |
| ACAAATGGAAATGGAACAAA+TGG | - | chr3.1:81211796-81211815 | MS.gene38561:CDS | 30.0% | |
| ACAATAATCTTACAGAAGCT+GGG | + | chr3.1:81213105-81213124 | None:intergenic | 30.0% | |
| ATAATTGGTTGGGTAGAAAA+AGG | + | chr3.1:81213476-81213495 | None:intergenic | 30.0% | |
| CAAATGGAAATGGAACAAAT+GGG | - | chr3.1:81211797-81211816 | MS.gene38561:CDS | 30.0% | |
| CAATCTATGTTTAACTCTGT+TGG | - | chr3.1:81212576-81212595 | MS.gene38561:intron | 30.0% | |
| CACATATATAAGATTACCAC+TGG | - | chr3.1:81212705-81212724 | MS.gene38561:intron | 30.0% | |
| CAGTATACTGAAGATATGAA+AGG | - | chr3.1:81214191-81214210 | MS.gene38561:CDS | 30.0% | |
| CATAGATTGAAGCAAATTCT+TGG | + | chr3.1:81212565-81212584 | None:intergenic | 30.0% | |
| CATATATAAGATTACCACTG+GGG | - | chr3.1:81212707-81212726 | MS.gene38561:intron | 30.0% | |
| GATCAAATCAAAGAACTTGT+CGG | - | chr3.1:81212992-81213011 | MS.gene38561:intron | 30.0% | |
| GCATAAAACAAGTGTAATGT+TGG | - | chr3.1:81213413-81213432 | MS.gene38561:CDS | 30.0% | |
| GTATACTGTCTCAATGAATT+TGG | + | chr3.1:81214179-81214198 | None:intergenic | 30.0% | |
| GTGACATATTAGTGTAATGT+TGG | - | chr3.1:81213573-81213592 | MS.gene38561:intron | 30.0% | |
| TAATTGGTTGGGTAGAAAAA+GGG | + | chr3.1:81213475-81213494 | None:intergenic | 30.0% | |
| TATTGCAATTCAAATGGAAG+TGG | - | chr3.1:81214485-81214504 | MS.gene38561:intron | 30.0% | |
| TATTTCAGATGAAACCCATT+GGG | - | chr3.1:81214380-81214399 | MS.gene38561:CDS | 30.0% | |
| TCGTTTCATTCTATATCAAC+AGG | - | chr3.1:81212927-81212946 | MS.gene38561:intron | 30.0% | |
| TTATTTCAGATGAAACCCAT+TGG | - | chr3.1:81214379-81214398 | MS.gene38561:CDS | 30.0% | |
| ! | AGATTTTGTAAGAACAAACC+TGG | + | chr3.1:81212245-81212264 | None:intergenic | 30.0% |
| ! | ATCAATTCTGAAAGTTTCCA+TGG | + | chr3.1:81214517-81214536 | None:intergenic | 30.0% |
| ! | CAAGTAAGAATGCTTTGAAT+AGG | - | chr3.1:81213146-81213165 | MS.gene38561:intron | 30.0% |
| ! | GATCAAAGAGTCTAATGTTT+TGG | + | chr3.1:81213818-81213837 | None:intergenic | 30.0% |
| ! | GTATTTAGGGTATAATTGGT+TGG | + | chr3.1:81213487-81213506 | None:intergenic | 30.0% |
| ! | TTTCAACACTTTTCTTCTCA+GGG | - | chr3.1:81212365-81212384 | MS.gene38561:intron | 30.0% |
| ! | TTTTCAACACTTTTCTTCTC+AGG | - | chr3.1:81212364-81212383 | MS.gene38561:intron | 30.0% |
| !! | AATTATTAGAGTGCTGTTTC+AGG | - | chr3.1:81213203-81213222 | MS.gene38561:intron | 30.0% |
| !! | TTGCTGTTGTAGCAAATTTT+TGG | - | chr3.1:81214052-81214071 | MS.gene38561:intron | 30.0% |
| AAAGGGGAAGTGAAAAATAG+TGG | + | chr3.1:81213458-81213477 | None:intergenic | 35.0% | |
| AAGGGGAAGTGAAAAATAGT+GGG | + | chr3.1:81213457-81213476 | None:intergenic | 35.0% | |
| AATTGGTTGGGTAGAAAAAG+GGG | + | chr3.1:81213474-81213493 | None:intergenic | 35.0% | |
| ACAACTCAAATATACACCAG+GGG | - | chr3.1:81214238-81214257 | MS.gene38561:intron | 35.0% | |
| AGACAACTCAAATATACACC+AGG | - | chr3.1:81214236-81214255 | MS.gene38561:intron | 35.0% | |
| AGTGGCTATTGCAATTCAAA+TGG | - | chr3.1:81214479-81214498 | MS.gene38561:intron | 35.0% | |
| ATAGTAAAGGCAACCTAAGA+AGG | + | chr3.1:81211844-81211863 | None:intergenic | 35.0% | |
| ATTTGTAGATCAGGGTAGAA+GGG | - | chr3.1:81214292-81214311 | MS.gene38561:intron | 35.0% | |
| CAATAATCTTACAGAAGCTG+GGG | + | chr3.1:81213104-81213123 | None:intergenic | 35.0% | |
| CATTGCTACAAGTGAATTAG+AGG | + | chr3.1:81212457-81212476 | None:intergenic | 35.0% | |
| CTCATCACTATACATCAACA+GGG | - | chr3.1:81214146-81214165 | MS.gene38561:intron | 35.0% | |
| CTCATTTACATGCTTCAGAA+TGG | + | chr3.1:81212176-81212195 | None:intergenic | 35.0% | |
| CTCTAATTCACTTGTAGCAA+TGG | - | chr3.1:81212455-81212474 | MS.gene38561:intron | 35.0% | |
| GACAACTCAAATATACACCA+GGG | - | chr3.1:81214237-81214256 | MS.gene38561:intron | 35.0% | |
| GACTCTTTGATCTCAACTTA+AGG | - | chr3.1:81213826-81213845 | MS.gene38561:CDS | 35.0% | |
| GCATGATATCGAAGAACATT+AGG | + | chr3.1:81213395-81213414 | None:intergenic | 35.0% | |
| TAGTAAAGGCAACCTAAGAA+GGG | + | chr3.1:81211843-81211862 | None:intergenic | 35.0% | |
| TCTCATCACTATACATCAAC+AGG | - | chr3.1:81214145-81214164 | MS.gene38561:intron | 35.0% | |
| TGGAATCCTAGTCTAATTCA+AGG | + | chr3.1:81214014-81214033 | None:intergenic | 35.0% | |
| TTACGGTTAGGAATCAAACT+CGG | + | chr3.1:81212786-81212805 | None:intergenic | 35.0% | |
| TTCTACTAGTTCAAGACTAC+TGG | + | chr3.1:81213780-81213799 | None:intergenic | 35.0% | |
| TTGAATAGGGAAACAAATGC+TGG | - | chr3.1:81213160-81213179 | MS.gene38561:intron | 35.0% | |
| TTGACAAGTTTATTGAGGGT+TGG | + | chr3.1:81213518-81213537 | None:intergenic | 35.0% | |
| TTGTGGATCATTCGAAACTA+AGG | + | chr3.1:81213985-81214004 | None:intergenic | 35.0% | |
| ! | AGTCCAAACCTCTCTTTTAT+TGG | - | chr3.1:81212618-81212637 | MS.gene38561:intron | 35.0% |
| ! | ATGAAGTGCCAATAAAAGAG+AGG | + | chr3.1:81212629-81212648 | None:intergenic | 35.0% |
| ! | GAAATTGGTCTGTCTTGTAT+AGG | - | chr3.1:81214336-81214355 | MS.gene38561:intron | 35.0% |
| ! | GAATTTTCCATTCCCTTCTT+AGG | - | chr3.1:81211828-81211847 | MS.gene38561:CDS | 35.0% |
| ! | GTTGGTAGGTCAAGTATTTA+GGG | + | chr3.1:81213500-81213519 | None:intergenic | 35.0% |
| ! | TTAGGATTTTTCATGGGTTC+TGG | - | chr3.1:81213252-81213271 | MS.gene38561:intron | 35.0% |
| !! | GAAAAGTGTTGAAAACAACC+AGG | + | chr3.1:81212359-81212378 | None:intergenic | 35.0% |
| !! | GGTGTATATTTGAGTTGTCT+TGG | + | chr3.1:81214236-81214255 | None:intergenic | 35.0% |
| !! | GTAAATGAGTTTGCTGCTAA+GGG | - | chr3.1:81212187-81212206 | MS.gene38561:CDS | 35.0% |
| !! | TATTTGAGTTGTCTTGGTAC+TGG | + | chr3.1:81214230-81214249 | None:intergenic | 35.0% |
| !! | TGTAAATGAGTTTGCTGCTA+AGG | - | chr3.1:81212186-81212205 | MS.gene38561:CDS | 35.0% |
| !!! | TGTGCTTCTTTTTTACGGTT+AGG | + | chr3.1:81212798-81212817 | None:intergenic | 35.0% |
| !!! | TGTTGTAGCAAATTTTTGGC+TGG | - | chr3.1:81214056-81214075 | MS.gene38561:intron | 35.0% |
| AAAGAGAGGTTTGGACTAAG+AGG | + | chr3.1:81212615-81212634 | None:intergenic | 40.0% | |
| AAGAGAGGTTTGGACTAAGA+GGG | + | chr3.1:81212614-81212633 | None:intergenic | 40.0% | |
| AAGTATAACATCTGTCGTCC+TGG | - | chr3.1:81212338-81212357 | MS.gene38561:intron | 40.0% | |
| AGGGGAAGTGAAAAATAGTG+GGG | + | chr3.1:81213456-81213475 | None:intergenic | 40.0% | |
| ATCGGCATCATTTGTAGATC+AGG | - | chr3.1:81214283-81214302 | MS.gene38561:intron | 40.0% | |
| CATTTGTAGATCAGGGTAGA+AGG | - | chr3.1:81214291-81214310 | MS.gene38561:intron | 40.0% | |
| CCTAGTCTAATTCAAGGAGA+CGG | + | chr3.1:81214008-81214027 | None:intergenic | 40.0% | |
| GAAGAGAAAGGAAACTGAGA+AGG | - | chr3.1:81213036-81213055 | MS.gene38561:intron | 40.0% | |
| GCAAAGTGAGATGAAGAGAA+AGG | - | chr3.1:81213024-81213043 | MS.gene38561:intron | 40.0% | |
| GCAATGAGAAGTCCTTACAA+CGG | - | chr3.1:81211961-81211980 | MS.gene38561:CDS | 40.0% | |
| GGAAAAGAAGTCATCATCAG+TGG | - | chr3.1:81214461-81214480 | MS.gene38561:intron | 40.0% | |
| GTGCCAATAAAAGAGAGGTT+TGG | + | chr3.1:81212624-81212643 | None:intergenic | 40.0% | |
| TAATGGCTTAACGAGGGAAT+CGG | - | chr3.1:81214265-81214284 | MS.gene38561:intron | 40.0% | |
| TAGCATAAGTTGTTGGTGTG+CGG | - | chr3.1:81212732-81212751 | MS.gene38561:intron | 40.0% | |
| TCGGCATCATTTGTAGATCA+GGG | - | chr3.1:81214284-81214303 | MS.gene38561:intron | 40.0% | |
| TGATCACGAACTAGAAGTCA+TGG | - | chr3.1:81211989-81212008 | MS.gene38561:intron | 40.0% | |
| TTAACTCTGTTGGAGATGCT+AGG | - | chr3.1:81212586-81212605 | MS.gene38561:intron | 40.0% | |
| TTGCACTCAATATCGTTCCA+AGG | + | chr3.1:81212312-81212331 | None:intergenic | 40.0% | |
| ! | AAAAATAGTGGGGGGAAACT+AGG | + | chr3.1:81213446-81213465 | None:intergenic | 40.0% |
| ! | AAGAACTTGTCGGTCTTTTG+CGG | - | chr3.1:81213002-81213021 | MS.gene38561:intron | 40.0% |
| ! | CAAGTTTATTGAGGGTTGGT+AGG | + | chr3.1:81213514-81213533 | None:intergenic | 40.0% |
| ! | GTTGAGTGTTGTAGATTGTG+TGG | - | chr3.1:81212758-81212777 | MS.gene38561:intron | 40.0% |
| !! | GGTTGGTAGGTCAAGTATTT+AGG | + | chr3.1:81213501-81213520 | None:intergenic | 40.0% |
| AAGCTTCTGGCAAGTTATGG+AGG | - | chr3.1:81214437-81214456 | MS.gene38561:intron | 45.0% | |
| AAGGCAACCTAAGAAGGGAA+TGG | + | chr3.1:81211838-81211857 | None:intergenic | 45.0% | |
| AATCCATTCTTCCCTCTTGG+AGG | + | chr3.1:81212220-81212239 | None:intergenic | 45.0% | |
| AATGGAAGTGGCAGAAACCA+TGG | - | chr3.1:81214497-81214516 | MS.gene38561:intron | 45.0% | |
| AGCATAAGTTGTTGGTGTGC+GGG | - | chr3.1:81212733-81212752 | MS.gene38561:intron | 45.0% | |
| ATATCAACAGGTGCCAACTC+TGG | - | chr3.1:81212939-81212958 | MS.gene38561:intron | 45.0% | |
| ATGAGAAGTCCTTACAACGG+TGG | - | chr3.1:81211964-81211983 | MS.gene38561:CDS | 45.0% | |
| ATTCTCGCCATTCTTGCACT+TGG | + | chr3.1:81212405-81212424 | None:intergenic | 45.0% | |
| CATGTCACCAAGTGCAAGAA+TGG | - | chr3.1:81212395-81212414 | MS.gene38561:intron | 45.0% | |
| CCGTCTCCTTGAATTAGACT+AGG | - | chr3.1:81214005-81214024 | MS.gene38561:intron | 45.0% | |
| CTAAAAGTGAGAGAGCAAGC+TGG | - | chr3.1:81213061-81213080 | MS.gene38561:intron | 45.0% | |
| CTAATTCAAGGAGACGGTTG+TGG | + | chr3.1:81214002-81214021 | None:intergenic | 45.0% | |
| GACAAGCTTCTGGCAAGTTA+TGG | - | chr3.1:81214434-81214453 | MS.gene38561:intron | 45.0% | |
| GCAAATCCATTCTTCCCTCT+TGG | + | chr3.1:81212223-81212242 | None:intergenic | 45.0% | |
| GCAATTGTAGGACAAGCTTC+TGG | - | chr3.1:81214424-81214443 | MS.gene38561:intron | 45.0% | |
| GGGGAAGTGAAAAATAGTGG+GGG | + | chr3.1:81213455-81213474 | None:intergenic | 45.0% | |
| GGTTGCTAATGGCTTAACGA+GGG | - | chr3.1:81214259-81214278 | MS.gene38561:intron | 45.0% | |
| GTTACTGTCTCCTGAATCAG+CGG | - | chr3.1:81213865-81213884 | MS.gene38561:CDS | 45.0% | |
| TATACACCAGGGGTTGCTAA+TGG | - | chr3.1:81214248-81214267 | MS.gene38561:intron | 45.0% | |
| TATCAACAGGTGCCAACTCT+GGG | - | chr3.1:81212940-81212959 | MS.gene38561:intron | 45.0% | |
| TGGAAATGGAACAAATGGGC+AGG | - | chr3.1:81211801-81211820 | MS.gene38561:CDS | 45.0% | |
| TGGAATCAGTTGCGCTCAAT+GGG | - | chr3.1:81212534-81212553 | MS.gene38561:intron | 45.0% | |
| TGGGGTCTAGCATAAGTTGT+TGG | - | chr3.1:81212725-81212744 | MS.gene38561:intron | 45.0% | |
| TTCATTGACAGCTGCCCAAT+GGG | + | chr3.1:81214397-81214416 | None:intergenic | 45.0% | |
| TTGGAATCAGTTGCGCTCAA+TGG | - | chr3.1:81212533-81212552 | MS.gene38561:intron | 45.0% | |
| TTTCATTGACAGCTGCCCAA+TGG | + | chr3.1:81214398-81214417 | None:intergenic | 45.0% | |
| ! | CATTCTTGCACTTGGTGACA+TGG | + | chr3.1:81212397-81212416 | None:intergenic | 45.0% |
| ! | GGGAAGTGAAAAATAGTGGG+GGG | + | chr3.1:81213454-81213473 | None:intergenic | 45.0% |
| !! | CTTGGTACTGGTACAGACAT+TGG | + | chr3.1:81214218-81214237 | None:intergenic | 45.0% |
| AGTCCTCCAAGAGGGAAGAA+TGG | - | chr3.1:81212214-81212233 | MS.gene38561:intron | 50.0% | |
| CAACTTATGCTAGACCCCAG+TGG | + | chr3.1:81212724-81212743 | None:intergenic | 50.0% | |
| CATTCACTAATCGCGGACGT+TGG | - | chr3.1:81212514-81212533 | MS.gene38561:intron | 50.0% | |
| CTTCTGGCAAGTTATGGAGG+TGG | - | chr3.1:81214440-81214459 | MS.gene38561:intron | 50.0% | |
| GCATAAGTTGTTGGTGTGCG+GGG | - | chr3.1:81212734-81212753 | MS.gene38561:intron | 50.0% | |
| GGGTTGCTAATGGCTTAACG+AGG | - | chr3.1:81214258-81214277 | MS.gene38561:intron | 50.0% | |
| GTGATCAAGCCACCGTTGTA+AGG | + | chr3.1:81211976-81211995 | None:intergenic | 50.0% | |
| GTTAAGCCATTAGCAACCCC+TGG | + | chr3.1:81214257-81214276 | None:intergenic | 50.0% | |
| ! | AATGGCTAGCTCCTCTGCAA+GGG | + | chr3.1:81212158-81212177 | None:intergenic | 50.0% |
| ! | GAGGGAAGAATGGATTTGCC+AGG | - | chr3.1:81212224-81212243 | MS.gene38561:intron | 50.0% |
| ! | TCTTGCACTTGGTGACATGG+AGG | + | chr3.1:81212394-81212413 | None:intergenic | 50.0% |
| !! | GAGAGGGCATTCACTAATCG+CGG | - | chr3.1:81212507-81212526 | MS.gene38561:intron | 50.0% |
| !! | GCTCAAAAAGCCGCTGATTC+AGG | + | chr3.1:81213878-81213897 | None:intergenic | 50.0% |
| AAGGGTCTCAGTCCTCCAAG+AGG | - | chr3.1:81212205-81212224 | MS.gene38561:CDS | 55.0% | |
| AGAAGCTGGGGTAGCCAATG+TGG | + | chr3.1:81213092-81213111 | None:intergenic | 55.0% | |
| AGGGTCTCAGTCCTCCAAGA+GGG | - | chr3.1:81212206-81212225 | MS.gene38561:CDS | 55.0% | |
| CCATGTCCTTCTCCCAGAGT+TGG | + | chr3.1:81212955-81212974 | None:intergenic | 55.0% | |
| CCTCTCTCGCTCTTCTGCTT+CGG | + | chr3.1:81212493-81212512 | None:intergenic | 55.0% | |
| CGAAGCAGAAGAGCGAGAGA+GGG | - | chr3.1:81212491-81212510 | MS.gene38561:intron | 55.0% | |
| GCAAGCTGGTGCAACCACAT+TGG | - | chr3.1:81213075-81213094 | MS.gene38561:intron | 55.0% | |
| ! | CCAACTCTGGGAGAAGGACA+TGG | - | chr3.1:81212952-81212971 | MS.gene38561:intron | 55.0% |
| ! | GAATGGCTAGCTCCTCTGCA+AGG | + | chr3.1:81212159-81212178 | None:intergenic | 55.0% |
| ! | TGCACTTGGTGACATGGAGG+AGG | + | chr3.1:81212391-81212410 | None:intergenic | 55.0% |
| CCGAAGCAGAAGAGCGAGAG+AGG | - | chr3.1:81212490-81212509 | MS.gene38561:intron | 60.0% | |
| TGTGGCAAAGCCTGTGAGCG+CGG | + | chr3.1:81214574-81214593 | None:intergenic | 60.0% | |
| ! | CAGGTGCCAACTCTGGGAGA+AGG | - | chr3.1:81212946-81212965 | MS.gene38561:intron | 60.0% |
| GAGAGCAAGACCGCGCTCAC+AGG | - | chr3.1:81214561-81214580 | MS.gene38561:intron | 65.0% | |
| CAGGCGAGCTGCCCTTGCAG+AGG | - | chr3.1:81212144-81212163 | MS.gene38561:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81211791 | 81214603 | 81211791 | ID=MS.gene38561 |
| chr3.1 | mRNA | 81211791 | 81214603 | 81211791 | ID=MS.gene38561.t1;Parent=MS.gene38561 |
| chr3.1 | exon | 81214572 | 81214603 | 81214572 | ID=MS.gene38561.t1.exon1;Parent=MS.gene38561.t1 |
| chr3.1 | CDS | 81214572 | 81214603 | 81214572 | ID=cds.MS.gene38561.t1;Parent=MS.gene38561.t1 |
| chr3.1 | exon | 81214337 | 81214434 | 81214337 | ID=MS.gene38561.t1.exon2;Parent=MS.gene38561.t1 |
| chr3.1 | CDS | 81214337 | 81214434 | 81214337 | ID=cds.MS.gene38561.t1;Parent=MS.gene38561.t1 |
| chr3.1 | exon | 81214149 | 81214247 | 81214149 | ID=MS.gene38561.t1.exon3;Parent=MS.gene38561.t1 |
| chr3.1 | CDS | 81214149 | 81214247 | 81214149 | ID=cds.MS.gene38561.t1;Parent=MS.gene38561.t1 |
| chr3.1 | exon | 81213787 | 81214008 | 81213787 | ID=MS.gene38561.t1.exon4;Parent=MS.gene38561.t1 |
| chr3.1 | CDS | 81213787 | 81214008 | 81213787 | ID=cds.MS.gene38561.t1;Parent=MS.gene38561.t1 |
| chr3.1 | exon | 81213283 | 81213445 | 81213283 | ID=MS.gene38561.t1.exon5;Parent=MS.gene38561.t1 |
| chr3.1 | CDS | 81213283 | 81213445 | 81213283 | ID=cds.MS.gene38561.t1;Parent=MS.gene38561.t1 |
| chr3.1 | exon | 81212081 | 81212227 | 81212081 | ID=MS.gene38561.t1.exon6;Parent=MS.gene38561.t1 |
| chr3.1 | CDS | 81212081 | 81212227 | 81212081 | ID=cds.MS.gene38561.t1;Parent=MS.gene38561.t1 |
| chr3.1 | exon | 81211791 | 81212006 | 81211791 | ID=MS.gene38561.t1.exon7;Parent=MS.gene38561.t1 |
| chr3.1 | CDS | 81211791 | 81212006 | 81211791 | ID=cds.MS.gene38561.t1;Parent=MS.gene38561.t1 |
| Gene Sequence |
| Protein sequence |
