Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46434.t1 | XP_003590314.1 | 91.9 | 185 | 15 | 0 | 1 | 185 | 1 | 185 | 4.40E-91 | 344 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46434.t1 | Q9SS03 | 49.3 | 152 | 73 | 3 | 36 | 185 | 40 | 189 | 4.1e-37 | 156.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46434.t1 | G7I8H9 | 91.9 | 185 | 15 | 0 | 1 | 185 | 1 | 185 | 3.2e-91 | 344.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049222 | MS.gene46434 | -0.810428 | 1.16E-50 | -1.69E-46 |
MS.gene050380 | MS.gene46434 | 0.856777 | 2.56E-62 | -1.69E-46 |
MS.gene050381 | MS.gene46434 | 0.830548 | 2.76E-55 | -1.69E-46 |
MS.gene050647 | MS.gene46434 | 0.800379 | 1.48E-48 | -1.69E-46 |
MS.gene050809 | MS.gene46434 | 0.826219 | 3.06E-54 | -1.69E-46 |
MS.gene050868 | MS.gene46434 | -0.804609 | 1.99E-49 | -1.69E-46 |
MS.gene050871 | MS.gene46434 | -0.807213 | 5.64E-50 | -1.69E-46 |
MS.gene051138 | MS.gene46434 | 0.816292 | 5.96E-52 | -1.69E-46 |
MS.gene051632 | MS.gene46434 | 0.810009 | 1.43E-50 | -1.69E-46 |
MS.gene051863 | MS.gene46434 | 0.807577 | 4.72E-50 | -1.69E-46 |
MS.gene051996 | MS.gene46434 | 0.803227 | 3.86E-49 | -1.69E-46 |
MS.gene05234 | MS.gene46434 | 0.800007 | 1.76E-48 | -1.69E-46 |
MS.gene05240 | MS.gene46434 | 0.802427 | 5.64E-49 | -1.69E-46 |
MS.gene053406 | MS.gene46434 | 0.831636 | 1.49E-55 | -1.69E-46 |
MS.gene053420 | MS.gene46434 | 0.807335 | 5.31E-50 | -1.69E-46 |
MS.gene053421 | MS.gene46434 | 0.825345 | 4.93E-54 | -1.69E-46 |
MS.gene054003 | MS.gene46434 | -0.800586 | 1.34E-48 | -1.69E-46 |
MS.gene054290 | MS.gene46434 | 0.823174 | 1.60E-53 | -1.69E-46 |
MS.gene054595 | MS.gene46434 | -0.821607 | 3.69E-53 | -1.69E-46 |
MS.gene054706 | MS.gene46434 | 0.8148 | 1.28E-51 | -1.69E-46 |
MS.gene054742 | MS.gene46434 | 0.820906 | 5.35E-53 | -1.69E-46 |
MS.gene055124 | MS.gene46434 | 0.822259 | 2.61E-53 | -1.69E-46 |
MS.gene055154 | MS.gene46434 | 0.808455 | 3.07E-50 | -1.69E-46 |
MS.gene055202 | MS.gene46434 | 0.826001 | 3.45E-54 | -1.69E-46 |
MS.gene055577 | MS.gene46434 | -0.802502 | 5.44E-49 | -1.69E-46 |
MS.gene055959 | MS.gene46434 | 0.827522 | 1.49E-54 | -1.69E-46 |
MS.gene056166 | MS.gene46434 | -0.802816 | 4.69E-49 | -1.69E-46 |
MS.gene056313 | MS.gene46434 | 0.810824 | 9.51E-51 | -1.69E-46 |
MS.gene056590 | MS.gene46434 | 0.811396 | 7.15E-51 | -1.69E-46 |
MS.gene056591 | MS.gene46434 | 0.81008 | 1.38E-50 | -1.69E-46 |
MS.gene056856 | MS.gene46434 | 0.807993 | 3.85E-50 | -1.69E-46 |
MS.gene057544 | MS.gene46434 | 0.809251 | 2.08E-50 | -1.69E-46 |
MS.gene058093 | MS.gene46434 | 0.841475 | 4.65E-58 | -1.69E-46 |
MS.gene058099 | MS.gene46434 | 0.82113 | 4.75E-53 | -1.69E-46 |
MS.gene058109 | MS.gene46434 | 0.819759 | 9.81E-53 | -1.69E-46 |
MS.gene058170 | MS.gene46434 | 0.817541 | 3.13E-52 | -1.69E-46 |
MS.gene058171 | MS.gene46434 | 0.852986 | 3.22E-61 | -1.69E-46 |
MS.gene058173 | MS.gene46434 | 0.849174 | 3.83E-60 | -1.69E-46 |
MS.gene058174 | MS.gene46434 | 0.816709 | 4.81E-52 | -1.69E-46 |
MS.gene058175 | MS.gene46434 | 0.851812 | 6.95E-61 | -1.69E-46 |
MS.gene058177 | MS.gene46434 | 0.809903 | 1.50E-50 | -1.69E-46 |
MS.gene058179 | MS.gene46434 | 0.833516 | 5.10E-56 | -1.69E-46 |
MS.gene058180 | MS.gene46434 | 0.831286 | 1.82E-55 | -1.69E-46 |
MS.gene058840 | MS.gene46434 | 0.822385 | 2.44E-53 | -1.69E-46 |
MS.gene059037 | MS.gene46434 | 0.826496 | 2.63E-54 | -1.69E-46 |
MS.gene059038 | MS.gene46434 | 0.815651 | 8.29E-52 | -1.69E-46 |
MS.gene059045 | MS.gene46434 | 0.837778 | 4.25E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46434.t1 | MTR_1g056370 | 91.398 | 186 | 16 | 0 | 1 | 186 | 1 | 186 | 1.85e-125 | 351 |
MS.gene46434.t1 | MTR_4g013330 | 48.052 | 154 | 76 | 2 | 36 | 186 | 47 | 199 | 1.87e-48 | 156 |
MS.gene46434.t1 | MTR_4g078885 | 46.703 | 182 | 89 | 5 | 4 | 185 | 11 | 184 | 3.64e-48 | 155 |
MS.gene46434.t1 | MTR_4g013320 | 45.238 | 168 | 84 | 4 | 22 | 186 | 37 | 199 | 2.41e-47 | 154 |
MS.gene46434.t1 | MTR_3g034030 | 45.902 | 183 | 91 | 4 | 6 | 185 | 7 | 184 | 7.41e-47 | 152 |
MS.gene46434.t1 | MTR_4g013350 | 47.059 | 153 | 77 | 3 | 36 | 186 | 47 | 197 | 5.72e-46 | 150 |
MS.gene46434.t1 | MTR_4g013345 | 45.752 | 153 | 79 | 3 | 36 | 186 | 46 | 196 | 1.70e-45 | 149 |
MS.gene46434.t1 | MTR_7g093830 | 43.850 | 187 | 91 | 5 | 2 | 186 | 19 | 193 | 5.20e-45 | 147 |
MS.gene46434.t1 | MTR_7g093790 | 39.894 | 188 | 100 | 4 | 1 | 186 | 15 | 191 | 7.49e-45 | 147 |
MS.gene46434.t1 | MTR_7g093820 | 46.203 | 158 | 82 | 3 | 31 | 186 | 38 | 194 | 1.12e-44 | 146 |
MS.gene46434.t1 | MTR_4g013325 | 45.205 | 146 | 78 | 2 | 42 | 186 | 55 | 199 | 1.28e-44 | 146 |
MS.gene46434.t1 | MTR_7g093850 | 43.316 | 187 | 92 | 5 | 2 | 186 | 20 | 194 | 1.32e-44 | 146 |
MS.gene46434.t1 | MTR_1g054525 | 46.053 | 152 | 78 | 3 | 36 | 186 | 44 | 192 | 8.49e-43 | 142 |
MS.gene46434.t1 | MTR_4g013385 | 40.642 | 187 | 98 | 5 | 7 | 186 | 10 | 190 | 2.26e-42 | 140 |
MS.gene46434.t1 | MTR_0433s0040 | 40.642 | 187 | 98 | 5 | 7 | 186 | 10 | 190 | 2.26e-42 | 140 |
MS.gene46434.t1 | MTR_4g013335 | 43.046 | 151 | 84 | 2 | 36 | 186 | 48 | 196 | 3.90e-42 | 140 |
MS.gene46434.t1 | MTR_4g013770 | 45.860 | 157 | 79 | 5 | 32 | 185 | 37 | 190 | 7.85e-42 | 139 |
MS.gene46434.t1 | MTR_4g073950 | 40.645 | 155 | 89 | 2 | 34 | 186 | 39 | 192 | 9.04e-42 | 139 |
MS.gene46434.t1 | MTR_7g070390 | 41.711 | 187 | 100 | 4 | 7 | 186 | 8 | 192 | 1.68e-41 | 138 |
MS.gene46434.t1 | MTR_3g105640 | 39.572 | 187 | 104 | 3 | 6 | 186 | 5 | 188 | 7.02e-40 | 134 |
MS.gene46434.t1 | MTR_4g013310 | 42.667 | 150 | 82 | 3 | 38 | 186 | 51 | 197 | 4.55e-39 | 132 |
MS.gene46434.t1 | MTR_3g105630 | 41.053 | 190 | 101 | 4 | 3 | 186 | 5 | 189 | 1.33e-38 | 131 |
MS.gene46434.t1 | MTR_7g093870 | 41.615 | 161 | 89 | 2 | 31 | 186 | 33 | 193 | 3.25e-37 | 128 |
MS.gene46434.t1 | MTR_5g096120 | 36.667 | 150 | 91 | 1 | 41 | 186 | 40 | 189 | 1.88e-33 | 117 |
MS.gene46434.t1 | MTR_4g013355 | 37.908 | 153 | 83 | 3 | 35 | 186 | 38 | 179 | 2.55e-29 | 107 |
MS.gene46434.t1 | MTR_4g122110 | 36.242 | 149 | 89 | 3 | 41 | 186 | 35 | 180 | 2.05e-24 | 94.4 |
MS.gene46434.t1 | MTR_4g122130 | 35.811 | 148 | 91 | 3 | 41 | 186 | 35 | 180 | 2.99e-22 | 89.0 |
MS.gene46434.t1 | MTR_4g049550 | 29.032 | 155 | 108 | 2 | 30 | 183 | 22 | 175 | 2.32e-19 | 81.3 |
MS.gene46434.t1 | MTR_4g049570 | 33.566 | 143 | 91 | 3 | 43 | 183 | 35 | 175 | 1.22e-18 | 79.3 |
MS.gene46434.t1 | MTR_8g099115 | 34.848 | 132 | 75 | 5 | 43 | 165 | 39 | 168 | 6.17e-14 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene46434.t1 | AT1G65870 | 50.000 | 152 | 72 | 3 | 36 | 185 | 40 | 189 | 3.40e-48 | 155 |
MS.gene46434.t1 | AT3G13650 | 41.711 | 187 | 97 | 6 | 4 | 186 | 8 | 186 | 2.22e-47 | 153 |
MS.gene46434.t1 | AT5G42510 | 48.344 | 151 | 74 | 3 | 36 | 185 | 35 | 182 | 3.60e-46 | 150 |
MS.gene46434.t1 | AT5G42500 | 49.007 | 151 | 73 | 3 | 36 | 185 | 38 | 185 | 4.59e-45 | 147 |
MS.gene46434.t1 | AT1G58170 | 43.671 | 158 | 85 | 3 | 31 | 186 | 30 | 185 | 3.39e-44 | 145 |
MS.gene46434.t1 | AT1G22900 | 49.007 | 151 | 73 | 3 | 36 | 185 | 46 | 193 | 4.20e-44 | 145 |
MS.gene46434.t1 | AT1G55210 | 46.405 | 153 | 75 | 4 | 36 | 186 | 40 | 187 | 2.86e-43 | 143 |
MS.gene46434.t1 | AT1G55210 | 46.405 | 153 | 75 | 4 | 36 | 186 | 40 | 187 | 2.86e-43 | 143 |
MS.gene46434.t1 | AT2G21100 | 42.466 | 146 | 82 | 2 | 41 | 185 | 43 | 187 | 2.75e-40 | 135 |
MS.gene46434.t1 | AT2G21100 | 42.466 | 146 | 82 | 2 | 41 | 185 | 43 | 187 | 2.75e-40 | 135 |
MS.gene46434.t1 | AT5G49040 | 39.634 | 164 | 95 | 3 | 24 | 186 | 31 | 191 | 1.32e-39 | 134 |
MS.gene46434.t1 | AT3G13662 | 43.165 | 139 | 74 | 3 | 36 | 173 | 38 | 172 | 9.59e-36 | 123 |
MS.gene46434.t1 | AT3G58090 | 47.101 | 138 | 63 | 3 | 53 | 185 | 139 | 271 | 4.88e-33 | 119 |
MS.gene46434.t1 | AT2G21110 | 37.805 | 164 | 96 | 2 | 28 | 186 | 24 | 186 | 1.13e-32 | 115 |
MS.gene46434.t1 | AT5G49030 | 43.511 | 131 | 72 | 2 | 36 | 165 | 41 | 170 | 2.65e-31 | 119 |
MS.gene46434.t1 | AT3G13660 | 42.105 | 114 | 65 | 1 | 73 | 186 | 13 | 125 | 6.40e-31 | 109 |
MS.gene46434.t1 | AT4G38700 | 35.897 | 156 | 92 | 4 | 38 | 186 | 36 | 190 | 1.78e-26 | 100 |
MS.gene46434.t1 | AT4G23690 | 35.878 | 131 | 77 | 5 | 35 | 161 | 35 | 162 | 5.89e-17 | 75.1 |
MS.gene46434.t1 | AT1G64160 | 33.898 | 118 | 71 | 4 | 46 | 159 | 41 | 155 | 1.56e-14 | 68.6 |
MS.gene46434.t1 | AT4G11190 | 33.884 | 121 | 73 | 5 | 45 | 161 | 41 | 158 | 1.78e-13 | 65.9 |
MS.gene46434.t1 | AT4G11210 | 30.488 | 164 | 108 | 5 | 2 | 165 | 5 | 162 | 2.92e-13 | 65.5 |
Find 43 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAAGCTCTGAACTTAAATT+TGG | 0.164549 | 1.2:+44401224 | None:intergenic |
GAATCATTTCATGGTCCTTT+TGG | 0.201390 | 1.2:-44401284 | MS.gene46434:CDS |
AAATTTGGTTCTTTAGTTAA+AGG | 0.202826 | 1.2:+44401239 | None:intergenic |
ATGCTTTGGCTAAGACTATT+TGG | 0.206020 | 1.2:-44401004 | MS.gene46434:CDS |
TTTCTGAGAGTAAACTTATA+TGG | 0.219169 | 1.2:+44401399 | None:intergenic |
GGTGAGGCTGCTCCCTTTGT+AGG | 0.246807 | 1.2:+44401112 | None:intergenic |
GCTTGGGAGGAATGTTATTA+TGG | 0.306263 | 1.2:-44401087 | MS.gene46434:CDS |
AAGAAGCAAGAGGCTGAAAA+TGG | 0.322317 | 1.2:+44401475 | None:intergenic |
AATTTAAGTTCAGAGCTTAT+TGG | 0.325685 | 1.2:-44401221 | MS.gene46434:CDS |
AGCCCAAGGAACCTATTCTT+TGG | 0.331068 | 1.2:-44401195 | MS.gene46434:CDS |
AATTTGGTTCTTTAGTTAAA+GGG | 0.362691 | 1.2:+44401240 | None:intergenic |
ATTTGGTATAATTCTACATC+TGG | 0.367460 | 1.2:-44400987 | MS.gene46434:CDS |
TTCTGAGAGTAAACTTATAT+GGG | 0.374193 | 1.2:+44401400 | None:intergenic |
CCACCCAATGAATCATTTCA+TGG | 0.398006 | 1.2:-44401293 | MS.gene46434:CDS |
AGGACCATGAAATGATTCAT+TGG | 0.400816 | 1.2:+44401289 | None:intergenic |
ATTTGCAAGGGGTTATGCTT+TGG | 0.411059 | 1.2:-44401018 | MS.gene46434:CDS |
ATGCCTATTGTTGGAGGAAC+TGG | 0.412156 | 1.2:-44401050 | MS.gene46434:CDS |
AATTACTTCATGAGTGTTCA+AGG | 0.435174 | 1.2:-44401446 | MS.gene46434:CDS |
GGGAGCAGCCTCACCATGCT+TGG | 0.438720 | 1.2:-44401104 | MS.gene46434:CDS |
GCACCAGTTCCTCCAACAAT+AGG | 0.444460 | 1.2:+44401047 | None:intergenic |
GTTAGAGAAATGCCTATTGT+TGG | 0.446792 | 1.2:-44401059 | MS.gene46434:CDS |
AAGCCAAAGAATAGGTTCCT+TGG | 0.451718 | 1.2:+44401192 | None:intergenic |
CATGAAAATAAAAGTGTAAG+TGG | 0.459702 | 1.2:+44401360 | None:intergenic |
AGCCAAAGAATAGGTTCCTT+GGG | 0.475806 | 1.2:+44401193 | None:intergenic |
GGACCATGAAATGATTCATT+GGG | 0.484202 | 1.2:+44401290 | None:intergenic |
TTGTTGAGAAGCCAAAGAAT+AGG | 0.495361 | 1.2:+44401184 | None:intergenic |
GGAGCAGCCTCACCATGCTT+GGG | 0.516739 | 1.2:-44401103 | MS.gene46434:CDS |
TTTACAGCTGGAACCTACAA+AGG | 0.527260 | 1.2:-44401125 | MS.gene46434:CDS |
AGAGAAATGCCTATTGTTGG+AGG | 0.533145 | 1.2:-44401056 | MS.gene46434:CDS |
TTACAGCTGGAACCTACAAA+GGG | 0.548749 | 1.2:-44401124 | MS.gene46434:CDS |
CTGGTGCTTTCAGATTTGCA+AGG | 0.550900 | 1.2:-44401031 | MS.gene46434:CDS |
AGTATGTAAGTGGCTCCAAA+AGG | 0.553653 | 1.2:+44401269 | None:intergenic |
TGGTGCTTTCAGATTTGCAA+GGG | 0.553765 | 1.2:-44401030 | MS.gene46434:CDS |
CCATGAAATGATTCATTGGG+TGG | 0.554764 | 1.2:+44401293 | None:intergenic |
AGGGTTGTCTAGTATGTAAG+TGG | 0.563851 | 1.2:+44401259 | None:intergenic |
TATTCTTTGGCTTCTCAACA+AGG | 0.573141 | 1.2:-44401182 | MS.gene46434:CDS |
ATGAAAATAAAAGTGTAAGT+GGG | 0.573723 | 1.2:+44401361 | None:intergenic |
GAGCTTATTGGAAGAGCCCA+AGG | 0.578477 | 1.2:-44401209 | MS.gene46434:CDS |
GCAGCCTCACCATGCTTGGG+AGG | 0.595405 | 1.2:-44401100 | MS.gene46434:CDS |
AATAACATTCCTCCCAAGCA+TGG | 0.596205 | 1.2:+44401091 | None:intergenic |
AATTACTGAAAAGAAGCAAG+AGG | 0.621735 | 1.2:+44401465 | None:intergenic |
CATTCCTCCCAAGCATGGTG+AGG | 0.641930 | 1.2:+44401096 | None:intergenic |
GGTGCTTTCAGATTTGCAAG+GGG | 0.678373 | 1.2:-44401029 | MS.gene46434:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTTGGTTCTTTAGTTAA+AGG | + | chr1.2:44401190-44401209 | None:intergenic | 20.0% |
!!! | AATTTGGTTCTTTAGTTAAA+GGG | + | chr1.2:44401189-44401208 | None:intergenic | 20.0% |
!!! | ATGAAAATAAAAGTGTAAGT+GGG | + | chr1.2:44401068-44401087 | None:intergenic | 20.0% |
!!! | ATTAATTTTGTTTTTACAGC+TGG | - | chr1.2:44401289-44401308 | MS.gene46434:CDS | 20.0% |
! | ATTTGGTATAATTCTACATC+TGG | - | chr1.2:44401439-44401458 | MS.gene46434:CDS | 25.0% |
!! | AATTTAAGTTCAGAGCTTAT+TGG | - | chr1.2:44401205-44401224 | MS.gene46434:CDS | 25.0% |
!! | CATGAAAATAAAAGTGTAAG+TGG | + | chr1.2:44401069-44401088 | None:intergenic | 25.0% |
!! | TTCTGAGAGTAAACTTATAT+GGG | + | chr1.2:44401029-44401048 | None:intergenic | 25.0% |
!! | TTTCTGAGAGTAAACTTATA+TGG | + | chr1.2:44401030-44401049 | None:intergenic | 25.0% |
!!! | ATAAGCTCTGAACTTAAATT+TGG | + | chr1.2:44401205-44401224 | None:intergenic | 25.0% |
!!! | TTGATAATTTTGAGTGTAGT+TGG | + | chr1.2:44401112-44401131 | None:intergenic | 25.0% |
AATTACTGAAAAGAAGCAAG+AGG | + | chr1.2:44400964-44400983 | None:intergenic | 30.0% | |
AATTACTTCATGAGTGTTCA+AGG | - | chr1.2:44400980-44400999 | MS.gene46434:CDS | 30.0% | |
! | TATTTTCATGACATCCTAGA+TGG | - | chr1.2:44401079-44401098 | MS.gene46434:CDS | 30.0% |
AGGACCATGAAATGATTCAT+TGG | + | chr1.2:44401140-44401159 | None:intergenic | 35.0% | |
ATGCTTTGGCTAAGACTATT+TGG | - | chr1.2:44401422-44401441 | MS.gene46434:CDS | 35.0% | |
GGACCATGAAATGATTCATT+GGG | + | chr1.2:44401139-44401158 | None:intergenic | 35.0% | |
GTTAGAGAAATGCCTATTGT+TGG | - | chr1.2:44401367-44401386 | MS.gene46434:CDS | 35.0% | |
TTGTTGAGAAGCCAAAGAAT+AGG | + | chr1.2:44401245-44401264 | None:intergenic | 35.0% | |
! | GAATCATTTCATGGTCCTTT+TGG | - | chr1.2:44401142-44401161 | MS.gene46434:CDS | 35.0% |
! | TATTCTTTGGCTTCTCAACA+AGG | - | chr1.2:44401244-44401263 | MS.gene46434:CDS | 35.0% |
!!! | TAGTTGGTTTTTCACCATCT+AGG | + | chr1.2:44401096-44401115 | None:intergenic | 35.0% |
AAGAAGCAAGAGGCTGAAAA+TGG | + | chr1.2:44400954-44400973 | None:intergenic | 40.0% | |
AAGCCAAAGAATAGGTTCCT+TGG | + | chr1.2:44401237-44401256 | None:intergenic | 40.0% | |
AATAACATTCCTCCCAAGCA+TGG | + | chr1.2:44401338-44401357 | None:intergenic | 40.0% | |
AGAGAAATGCCTATTGTTGG+AGG | - | chr1.2:44401370-44401389 | MS.gene46434:CDS | 40.0% | |
AGCCAAAGAATAGGTTCCTT+GGG | + | chr1.2:44401236-44401255 | None:intergenic | 40.0% | |
AGGGTTGTCTAGTATGTAAG+TGG | + | chr1.2:44401170-44401189 | None:intergenic | 40.0% | |
AGTATGTAAGTGGCTCCAAA+AGG | + | chr1.2:44401160-44401179 | None:intergenic | 40.0% | |
ATTTGCAAGGGGTTATGCTT+TGG | - | chr1.2:44401408-44401427 | MS.gene46434:CDS | 40.0% | |
CCACCCAATGAATCATTTCA+TGG | - | chr1.2:44401133-44401152 | MS.gene46434:CDS | 40.0% | |
CCATGAAATGATTCATTGGG+TGG | + | chr1.2:44401136-44401155 | None:intergenic | 40.0% | |
GCTTGGGAGGAATGTTATTA+TGG | - | chr1.2:44401339-44401358 | MS.gene46434:CDS | 40.0% | |
TGGTGCTTTCAGATTTGCAA+GGG | - | chr1.2:44401396-44401415 | MS.gene46434:CDS | 40.0% | |
TTACAGCTGGAACCTACAAA+GGG | - | chr1.2:44401302-44401321 | MS.gene46434:CDS | 40.0% | |
TTTACAGCTGGAACCTACAA+AGG | - | chr1.2:44401301-44401320 | MS.gene46434:CDS | 40.0% | |
AGCCCAAGGAACCTATTCTT+TGG | - | chr1.2:44401231-44401250 | MS.gene46434:CDS | 45.0% | |
ATGCCTATTGTTGGAGGAAC+TGG | - | chr1.2:44401376-44401395 | MS.gene46434:CDS | 45.0% | |
CTGGTGCTTTCAGATTTGCA+AGG | - | chr1.2:44401395-44401414 | MS.gene46434:CDS | 45.0% | |
GGTGCTTTCAGATTTGCAAG+GGG | - | chr1.2:44401397-44401416 | MS.gene46434:CDS | 45.0% | |
GAGCTTATTGGAAGAGCCCA+AGG | - | chr1.2:44401217-44401236 | MS.gene46434:CDS | 50.0% | |
GCACCAGTTCCTCCAACAAT+AGG | + | chr1.2:44401382-44401401 | None:intergenic | 50.0% | |
CATTCCTCCCAAGCATGGTG+AGG | + | chr1.2:44401333-44401352 | None:intergenic | 55.0% | |
GGAGCAGCCTCACCATGCTT+GGG | - | chr1.2:44401323-44401342 | MS.gene46434:CDS | 60.0% | |
GGTGAGGCTGCTCCCTTTGT+AGG | + | chr1.2:44401317-44401336 | None:intergenic | 60.0% | |
GCAGCCTCACCATGCTTGGG+AGG | - | chr1.2:44401326-44401345 | MS.gene46434:CDS | 65.0% | |
GGGAGCAGCCTCACCATGCT+TGG | - | chr1.2:44401322-44401341 | MS.gene46434:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 44400944 | 44401504 | 44400944 | ID=MS.gene46434 |
chr1.2 | mRNA | 44400944 | 44401504 | 44400944 | ID=MS.gene46434.t1;Parent=MS.gene46434 |
chr1.2 | exon | 44400944 | 44401504 | 44400944 | ID=MS.gene46434.t1.exon1;Parent=MS.gene46434.t1 |
chr1.2 | CDS | 44400944 | 44401504 | 44400944 | ID=cds.MS.gene46434.t1;Parent=MS.gene46434.t1 |
Gene Sequence |
Protein sequence |