Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47283.t1 | XP_013451524.1 | 98.8 | 586 | 7 | 0 | 1 | 586 | 1 | 586 | 0.00E+00 | 1110.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47283.t1 | Q9FKP1 | 50.2 | 582 | 266 | 6 | 9 | 586 | 6 | 567 | 2.9e-145 | 516.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47283.t1 | A0A072U799 | 98.8 | 586 | 7 | 0 | 1 | 586 | 1 | 586 | 0.0e+00 | 1110.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene47283 | 0.816578 | 5.14E-52 | -1.69E-46 |
| MS.gene049260 | MS.gene47283 | 0.801605 | 8.32E-49 | -1.69E-46 |
| MS.gene049382 | MS.gene47283 | 0.81136 | 7.28E-51 | -1.69E-46 |
| MS.gene049915 | MS.gene47283 | 0.807723 | 4.40E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene47283 | 0.838943 | 2.13E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene47283 | 0.812907 | 3.35E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene47283 | 0.808474 | 3.04E-50 | -1.69E-46 |
| MS.gene050586 | MS.gene47283 | 0.815909 | 7.26E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene47283 | 0.832566 | 8.79E-56 | -1.69E-46 |
| MS.gene050815 | MS.gene47283 | 0.85117 | 1.06E-60 | -1.69E-46 |
| MS.gene051243 | MS.gene47283 | 0.801821 | 7.52E-49 | -1.69E-46 |
| MS.gene051626 | MS.gene47283 | 0.861591 | 9.21E-64 | -1.69E-46 |
| MS.gene051789 | MS.gene47283 | 0.859004 | 5.58E-63 | -1.69E-46 |
| MS.gene051860 | MS.gene47283 | 0.80711 | 5.93E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene47283 | 0.813018 | 3.16E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene47283 | 0.805938 | 1.05E-49 | -1.69E-46 |
| MS.gene05288 | MS.gene47283 | 0.82315 | 1.62E-53 | -1.69E-46 |
| MS.gene052967 | MS.gene47283 | 0.806159 | 9.42E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene47283 | 0.826106 | 3.25E-54 | -1.69E-46 |
| MS.gene053074 | MS.gene47283 | 0.890555 | 8.86E-74 | -1.69E-46 |
| MS.gene053184 | MS.gene47283 | 0.815712 | 8.03E-52 | -1.69E-46 |
| MS.gene053630 | MS.gene47283 | 0.823898 | 1.08E-53 | -1.69E-46 |
| MS.gene054184 | MS.gene47283 | 0.855298 | 6.93E-62 | -1.69E-46 |
| MS.gene054185 | MS.gene47283 | 0.858699 | 6.89E-63 | -1.69E-46 |
| MS.gene054542 | MS.gene47283 | 0.807972 | 3.89E-50 | -1.69E-46 |
| MS.gene054596 | MS.gene47283 | 0.842778 | 2.10E-58 | -1.69E-46 |
| MS.gene054658 | MS.gene47283 | 0.803674 | 3.11E-49 | -1.69E-46 |
| MS.gene054713 | MS.gene47283 | 0.842518 | 2.46E-58 | -1.69E-46 |
| MS.gene05510 | MS.gene47283 | 0.808709 | 2.71E-50 | -1.69E-46 |
| MS.gene055207 | MS.gene47283 | 0.805461 | 1.32E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene47283 | 0.849321 | 3.48E-60 | -1.69E-46 |
| MS.gene055860 | MS.gene47283 | 0.806287 | 8.85E-50 | -1.69E-46 |
| MS.gene057260 | MS.gene47283 | 0.806071 | 9.83E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene47283 | 0.813339 | 2.69E-51 | -1.69E-46 |
| MS.gene057754 | MS.gene47283 | 0.830119 | 3.51E-55 | -1.69E-46 |
| MS.gene058042 | MS.gene47283 | 0.826699 | 2.35E-54 | -1.69E-46 |
| MS.gene058168 | MS.gene47283 | 0.877627 | 5.40E-69 | -1.69E-46 |
| MS.gene058236 | MS.gene47283 | 0.809007 | 2.34E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene47283 | 0.810547 | 1.09E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene47283 | 0.869859 | 2.26E-66 | -1.69E-46 |
| MS.gene059124 | MS.gene47283 | 0.830019 | 3.72E-55 | -1.69E-46 |
| MS.gene059421 | MS.gene47283 | 0.812712 | 3.69E-51 | -1.69E-46 |
| MS.gene059937 | MS.gene47283 | 0.809093 | 2.24E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene47283 | 0.816831 | 4.51E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene47283 | 0.838463 | 2.83E-57 | -1.69E-46 |
| MS.gene060998 | MS.gene47283 | 0.808195 | 3.49E-50 | -1.69E-46 |
| MS.gene061113 | MS.gene47283 | 0.803075 | 4.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47283.t1 | MTR_6g027580 | 98.805 | 586 | 7 | 0 | 1 | 586 | 1 | 586 | 0.0 | 1160 |
| MS.gene47283.t1 | MTR_7g086690 | 49.624 | 532 | 249 | 7 | 67 | 586 | 59 | 583 | 3.82e-151 | 447 |
| MS.gene47283.t1 | MTR_8g021180 | 45.126 | 554 | 260 | 5 | 69 | 583 | 98 | 646 | 1.22e-149 | 446 |
| MS.gene47283.t1 | MTR_6g027570 | 48.097 | 578 | 279 | 8 | 16 | 586 | 9 | 572 | 3.93e-147 | 437 |
| MS.gene47283.t1 | MTR_7g113730 | 30.972 | 494 | 302 | 10 | 95 | 582 | 55 | 515 | 2.28e-50 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47283.t1 | AT5G17860 | 53.640 | 522 | 233 | 4 | 67 | 586 | 53 | 567 | 0.0 | 546 |
| MS.gene47283.t1 | AT5G17860 | 51.533 | 522 | 209 | 5 | 67 | 586 | 53 | 532 | 1.03e-174 | 506 |
| MS.gene47283.t1 | AT1G54115 | 41.519 | 619 | 294 | 8 | 26 | 583 | 27 | 638 | 7.67e-155 | 459 |
| MS.gene47283.t1 | AT3G14070 | 44.203 | 552 | 265 | 6 | 69 | 583 | 92 | 637 | 8.66e-154 | 456 |
| MS.gene47283.t1 | AT5G17850 | 48.177 | 521 | 254 | 6 | 69 | 583 | 46 | 556 | 2.94e-138 | 413 |
| MS.gene47283.t1 | AT5G17850 | 48.177 | 521 | 254 | 6 | 69 | 583 | 46 | 556 | 2.94e-138 | 413 |
| MS.gene47283.t1 | AT1G08960 | 32.115 | 520 | 303 | 10 | 77 | 581 | 58 | 542 | 2.95e-64 | 220 |
Find 82 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGTTTCTTGTTTATA+AGG | 0.167874 | 6.4:-2387884 | MS.gene47283:CDS |
| GGTTGGTTTAAATAGCATTT+TGG | 0.190639 | 6.4:-2389044 | MS.gene47283:CDS |
| TATTTAACATCATCATTAAT+TGG | 0.192192 | 6.4:-2388416 | MS.gene47283:CDS |
| TTAGGAACAACATAAGAATT+AGG | 0.200723 | 6.4:+2388029 | None:intergenic |
| TCATTAATTGGAATTGTCTT+TGG | 0.222790 | 6.4:-2388404 | MS.gene47283:CDS |
| TCCTAAGGATAGTTCACTTT+TGG | 0.246796 | 6.4:-2388012 | MS.gene47283:CDS |
| ATTTCAATTGGATATGTAAT+TGG | 0.264822 | 6.4:-2388251 | MS.gene47283:CDS |
| CTTGGAAATTCGCCAATTCT+TGG | 0.275369 | 6.4:-2389274 | MS.gene47283:CDS |
| GGTGCACAAATTGCTGTTTC+AGG | 0.282821 | 6.4:-2388128 | MS.gene47283:CDS |
| CAAGAAGATGTTTGTTTCCT+TGG | 0.294111 | 6.4:-2388343 | MS.gene47283:CDS |
| CATCTACGAAGTTGACAAAA+AGG | 0.319201 | 6.4:-2388792 | MS.gene47283:CDS |
| TAGAAACTTCCACAAGTAAT+AGG | 0.324007 | 6.4:+2388613 | None:intergenic |
| TATGCAACTAAACTACTCTT+TGG | 0.330716 | 6.4:+2388437 | None:intergenic |
| CATTAATTGGAATTGTCTTT+GGG | 0.347777 | 6.4:-2388403 | MS.gene47283:CDS |
| AGGATTGATATAAAGTTTGA+TGG | 0.349971 | 6.4:+2389498 | None:intergenic |
| ACCTCTTGTTCTTTCAGCAT+GGG | 0.351823 | 6.4:-2388060 | MS.gene47283:CDS |
| TTTATCAACTGAAACTTCAT+TGG | 0.356036 | 6.4:+2388964 | None:intergenic |
| GAGTTGGAAGTGAAAGTATA+AGG | 0.357006 | 6.4:+2389586 | None:intergenic |
| GAATCCGGAATACCATTGTT+AGG | 0.361828 | 6.4:-2388734 | MS.gene47283:CDS |
| CAAGGAAACAAACATCTTCT+TGG | 0.367485 | 6.4:+2388344 | None:intergenic |
| ACTTCAATACTTTGTAAAAT+CGG | 0.368947 | 6.4:+2388665 | None:intergenic |
| AAACAAGAAACAAAGGTAAA+TGG | 0.374670 | 6.4:+2387890 | None:intergenic |
| AGGGTTAACTGTCCTAGCTT+GGG | 0.375452 | 6.4:-2388210 | MS.gene47283:CDS |
| ACAAAGTATTGAAGTAAAAG+AGG | 0.381832 | 6.4:-2388657 | MS.gene47283:CDS |
| CAAAGAATTGCGAATAAAAT+CGG | 0.396842 | 6.4:+2388485 | None:intergenic |
| TAGGAACAACATAAGAATTA+GGG | 0.400579 | 6.4:+2388030 | None:intergenic |
| TACCTCTTGTTCTTTCAGCA+TGG | 0.401236 | 6.4:-2388061 | MS.gene47283:CDS |
| AAATGAGAATTAGTATTTGA+AGG | 0.407600 | 6.4:+2389478 | None:intergenic |
| TGTGATGATTTAGTTGAATC+CGG | 0.417427 | 6.4:-2388749 | MS.gene47283:CDS |
| CTAGGTGATTTGATAGCAAA+TGG | 0.424425 | 6.4:-2388179 | MS.gene47283:CDS |
| TGTTTGTTTCCTTGGCTAGC+TGG | 0.426986 | 6.4:-2388335 | MS.gene47283:CDS |
| GAAGAATGAACAAAGAGAAA+AGG | 0.434641 | 6.4:+2388912 | None:intergenic |
| TAATTCTTATGTTGTTCCTA+AGG | 0.435073 | 6.4:-2388027 | MS.gene47283:CDS |
| CGGTTGTGAATGAAGAAAAC+TGG | 0.441944 | 6.4:-2388544 | MS.gene47283:CDS |
| TAGGGTTAACTGTCCTAGCT+TGG | 0.444307 | 6.4:-2388211 | MS.gene47283:CDS |
| CTTCTTATCATCATTTCCAT+TGG | 0.447250 | 6.4:-2388893 | MS.gene47283:CDS |
| CATTCTGATTGTAGATCAAA+AGG | 0.451621 | 6.4:-2389331 | MS.gene47283:CDS |
| ATAAGGTTAGCCATGGCAAT+TGG | 0.456604 | 6.4:-2387867 | MS.gene47283:CDS |
| AGTAGTGTGTGACCAAGAAT+TGG | 0.459219 | 6.4:+2389262 | None:intergenic |
| GCTGTTTCAGGTTGTTATGC+TGG | 0.461252 | 6.4:-2388116 | MS.gene47283:CDS |
| TGGAATTGTCTTTGGGAACA+TGG | 0.468183 | 6.4:-2388396 | MS.gene47283:CDS |
| AATTCTTTGCAATACACAAA+TGG | 0.485520 | 6.4:-2388471 | MS.gene47283:CDS |
| ACAGTTAACCCTAAAATTGA+AGG | 0.486050 | 6.4:+2388221 | None:intergenic |
| AGACTATCTCCAACCATAGC+TGG | 0.492385 | 6.4:-2389148 | MS.gene47283:CDS |
| ACAACACTAGCAAAGAAATC+AGG | 0.497139 | 6.4:+2389094 | None:intergenic |
| ATAACCTAACAATGGTATTC+CGG | 0.500507 | 6.4:+2388730 | None:intergenic |
| ACCAAGAAAACTCACTATAC+CGG | 0.516679 | 6.4:-2388564 | MS.gene47283:CDS |
| TGCGAATAAAATCGGTGCTA+AGG | 0.517302 | 6.4:+2388493 | None:intergenic |
| CCCAAAAGTGAACTATCCTT+AGG | 0.527760 | 6.4:+2388011 | None:intergenic |
| CCTCTTGTTCTTTCAGCATG+GGG | 0.528941 | 6.4:-2388059 | MS.gene47283:CDS |
| CAAGAATTGGCGAATTTCCA+AGG | 0.529362 | 6.4:+2389275 | None:intergenic |
| CTTGTTTATAAGGTTAGCCA+TGG | 0.529470 | 6.4:-2387874 | MS.gene47283:CDS |
| AGTTCAAACAATGGCGCGGT+TGG | 0.532249 | 6.4:-2389061 | MS.gene47283:CDS |
| CTAGCTTGGGGAAATTCTCT+AGG | 0.533445 | 6.4:-2388197 | MS.gene47283:CDS |
| TGAAGAGGAAGGATGTGTTG+AGG | 0.534769 | 6.4:+2389533 | None:intergenic |
| GGAAACAAACATCTTCTTGG+TGG | 0.548039 | 6.4:+2388347 | None:intergenic |
| CTAGAGAATTTCCCCAAGCT+AGG | 0.548665 | 6.4:+2388198 | None:intergenic |
| GGGTTAACTGTCCTAGCTTG+GGG | 0.549560 | 6.4:-2388209 | MS.gene47283:CDS |
| TTGTTTCCTTGGCTAGCTGG+TGG | 0.552371 | 6.4:-2388332 | MS.gene47283:CDS |
| CAATACACAAATGGAAAATG+TGG | 0.556780 | 6.4:-2388462 | MS.gene47283:CDS |
| GAGTAATGTTACACCAGCTA+TGG | 0.572246 | 6.4:+2389135 | None:intergenic |
| CCCCATGCTGAAAGAACAAG+AGG | 0.572553 | 6.4:+2388059 | None:intergenic |
| AAAGTAATTTGAAGCCGTGT+CGG | 0.579217 | 6.4:+2389204 | None:intergenic |
| ATCATTATCAGTATCATCGT+CGG | 0.584965 | 6.4:+2388706 | None:intergenic |
| ATTAAGAGCACCAATTGCCA+TGG | 0.587028 | 6.4:+2387857 | None:intergenic |
| TATGATGCCTAAAACTGCTG+TGG | 0.594615 | 6.4:+2389003 | None:intergenic |
| TTTGATAGCAAATGGTGCTA+TGG | 0.595159 | 6.4:-2388171 | MS.gene47283:CDS |
| AATGTTACACCAGCTATGGT+TGG | 0.602466 | 6.4:+2389139 | None:intergenic |
| GTAACTGATATAACCGCGTA+TGG | 0.604588 | 6.4:+2388515 | None:intergenic |
| TCTTTCACAAGTTCAAACAA+TGG | 0.607460 | 6.4:-2389070 | MS.gene47283:CDS |
| CACAAGTTCAAACAATGGCG+CGG | 0.610233 | 6.4:-2389065 | MS.gene47283:CDS |
| GAAAATCCACCAGCTAGCCA+AGG | 0.618132 | 6.4:+2388326 | None:intergenic |
| CCCATCAAAATATTAAACAT+AGG | 0.620623 | 6.4:+2388092 | None:intergenic |
| ACATTACTCTCACTAGGTAA+CGG | 0.627117 | 6.4:-2389121 | MS.gene47283:CDS |
| GATGAAATGTGTGGCTGAGA+CGG | 0.638966 | 6.4:+2388811 | None:intergenic |
| ACCTTATAAACAAGAAACAA+AGG | 0.640232 | 6.4:+2387883 | None:intergenic |
| CACTTGTGAGAATTCTAGCA+TGG | 0.653451 | 6.4:+2389428 | None:intergenic |
| GGTGTAACATTACTCTCACT+AGG | 0.658329 | 6.4:-2389127 | MS.gene47283:CDS |
| ATGGACTTATATAATAGCTG+AGG | 0.679474 | 6.4:-2388291 | MS.gene47283:CDS |
| TCGTCGGCATAACCTAACAA+TGG | 0.685674 | 6.4:+2388722 | None:intergenic |
| AAACTGGTCGAAACCATACG+CGG | 0.707194 | 6.4:-2388528 | MS.gene47283:CDS |
| AACTTCGTAGATGAAATGTG+TGG | 0.769680 | 6.4:+2388802 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAACATCATCATTAAT+TGG | - | chr6.4:2389030-2389049 | MS.gene47283:CDS | 15.0% |
| !! | AAAGTTTGATGGAAAAAAAT+AGG | + | chr6.4:2387940-2387959 | None:intergenic | 20.0% |
| !! | AAATGAGAATTAGTATTTGA+AGG | + | chr6.4:2387971-2387990 | None:intergenic | 20.0% |
| !! | ACTTCAATACTTTGTAAAAT+CGG | + | chr6.4:2388784-2388803 | None:intergenic | 20.0% |
| !! | ATTTCAATTGGATATGTAAT+TGG | - | chr6.4:2389195-2389214 | MS.gene47283:CDS | 20.0% |
| !!! | CCTATGTTTAATATTTTGAT+GGG | - | chr6.4:2389354-2389373 | MS.gene47283:CDS | 20.0% |
| !!! | TCCTATGTTTAATATTTTGA+TGG | - | chr6.4:2389353-2389372 | MS.gene47283:CDS | 20.0% |
| !!! | TTAATATTTTGATGGGTTTA+GGG | - | chr6.4:2389361-2389380 | MS.gene47283:CDS | 20.0% |
| !!! | TTTAATATTTTGATGGGTTT+AGG | - | chr6.4:2389360-2389379 | MS.gene47283:CDS | 20.0% |
| !!! | TTTTAGTTAAGAAGAATATG+AGG | - | chr6.4:2389502-2389521 | MS.gene47283:CDS | 20.0% |
| ! | AAAAAGACTAATCTTTCCAA+TGG | + | chr6.4:2388572-2388591 | None:intergenic | 25.0% |
| ! | AAACAAGAAACAAAGGTAAA+TGG | + | chr6.4:2389559-2389578 | None:intergenic | 25.0% |
| ! | AATTCTTTGCAATACACAAA+TGG | - | chr6.4:2388975-2388994 | MS.gene47283:CDS | 25.0% |
| ! | ACCTTATAAACAAGAAACAA+AGG | + | chr6.4:2389566-2389585 | None:intergenic | 25.0% |
| ! | AGGATTGATATAAAGTTTGA+TGG | + | chr6.4:2387951-2387970 | None:intergenic | 25.0% |
| ! | CAAAGAATTGCGAATAAAAT+CGG | + | chr6.4:2388964-2388983 | None:intergenic | 25.0% |
| ! | CATTAATTGGAATTGTCTTT+GGG | - | chr6.4:2389043-2389062 | MS.gene47283:CDS | 25.0% |
| ! | CCCATCAAAATATTAAACAT+AGG | + | chr6.4:2389357-2389376 | None:intergenic | 25.0% |
| ! | TAATTCTTATGTTGTTCCTA+AGG | - | chr6.4:2389419-2389438 | MS.gene47283:CDS | 25.0% |
| ! | TAGGAACAACATAAGAATTA+GGG | + | chr6.4:2389419-2389438 | None:intergenic | 25.0% |
| ! | TCATTAATTGGAATTGTCTT+TGG | - | chr6.4:2389042-2389061 | MS.gene47283:CDS | 25.0% |
| ! | TTAGGAACAACATAAGAATT+AGG | + | chr6.4:2389420-2389439 | None:intergenic | 25.0% |
| ! | TTTATCAACTGAAACTTCAT+TGG | + | chr6.4:2388485-2388504 | None:intergenic | 25.0% |
| !! | ACCTTTGTTTCTTGTTTATA+AGG | - | chr6.4:2389562-2389581 | MS.gene47283:CDS | 25.0% |
| !! | CAAATCTTTTATTGTAACCT+TGG | - | chr6.4:2388154-2388173 | MS.gene47283:CDS | 25.0% |
| !! | TTGGTTTAAATAGCATTTTG+GGG | - | chr6.4:2388404-2388423 | MS.gene47283:CDS | 25.0% |
| !!! | AATATTGTTTTTGATGGTAG+GGG | - | chr6.4:2389461-2389480 | MS.gene47283:CDS | 25.0% |
| !!! | ACAAAGTATTGAAGTAAAAG+AGG | - | chr6.4:2388789-2388808 | MS.gene47283:CDS | 25.0% |
| !!! | ACAATATTGTTTTTGATGGT+AGG | - | chr6.4:2389459-2389478 | MS.gene47283:CDS | 25.0% |
| !!! | ATTGGAAAGATTAGTCTTTT+TGG | - | chr6.4:2388571-2388590 | MS.gene47283:CDS | 25.0% |
| !!! | CAATATTGTTTTTGATGGTA+GGG | - | chr6.4:2389460-2389479 | MS.gene47283:CDS | 25.0% |
| !!! | GTTGGTTTAAATAGCATTTT+GGG | - | chr6.4:2388403-2388422 | MS.gene47283:CDS | 25.0% |
| !!! | GTTTCACTTTTGATTTCAAT+TGG | - | chr6.4:2389183-2389202 | MS.gene47283:CDS | 25.0% |
| !!! | TTTTTAGTACCTATTACTTG+TGG | - | chr6.4:2388824-2388843 | MS.gene47283:CDS | 25.0% |
| AAAAAATAGGATGAAGAGGA+AGG | + | chr6.4:2387927-2387946 | None:intergenic | 30.0% | |
| ACAGTTAACCCTAAAATTGA+AGG | + | chr6.4:2389228-2389247 | None:intergenic | 30.0% | |
| ATAACCTAACAATGGTATTC+CGG | + | chr6.4:2388719-2388738 | None:intergenic | 30.0% | |
| ATCATTATCAGTATCATCGT+CGG | + | chr6.4:2388743-2388762 | None:intergenic | 30.0% | |
| ATGGACTTATATAATAGCTG+AGG | - | chr6.4:2389155-2389174 | MS.gene47283:CDS | 30.0% | |
| CAATACACAAATGGAAAATG+TGG | - | chr6.4:2388984-2389003 | MS.gene47283:CDS | 30.0% | |
| CATTCTGATTGTAGATCAAA+AGG | - | chr6.4:2388115-2388134 | MS.gene47283:CDS | 30.0% | |
| CTTCTTATCATCATTTCCAT+TGG | - | chr6.4:2388553-2388572 | MS.gene47283:CDS | 30.0% | |
| GAAGAATGAACAAAGAGAAA+AGG | + | chr6.4:2388537-2388556 | None:intergenic | 30.0% | |
| TAGAAACTTCCACAAGTAAT+AGG | + | chr6.4:2388836-2388855 | None:intergenic | 30.0% | |
| TATGCAACTAAACTACTCTT+TGG | + | chr6.4:2389012-2389031 | None:intergenic | 30.0% | |
| TCTTTCACAAGTTCAAACAA+TGG | - | chr6.4:2388376-2388395 | MS.gene47283:CDS | 30.0% | |
| TGGAAAAAAATAGGATGAAG+AGG | + | chr6.4:2387931-2387950 | None:intergenic | 30.0% | |
| TGTGATGATTTAGTTGAATC+CGG | - | chr6.4:2388697-2388716 | MS.gene47283:CDS | 30.0% | |
| ! | AGTTTTCTTGGTAAACAAAG+TGG | + | chr6.4:2388874-2388893 | None:intergenic | 30.0% |
| ! | ATGAGGCTTGATAAGTTTTT+AGG | - | chr6.4:2389519-2389538 | MS.gene47283:CDS | 30.0% |
| ! | GTGTTAGTCCTTCAATTTTA+GGG | - | chr6.4:2389217-2389236 | MS.gene47283:CDS | 30.0% |
| ! | TGAGGCTTGATAAGTTTTTA+GGG | - | chr6.4:2389520-2389539 | MS.gene47283:CDS | 30.0% |
| ! | TGGTTTAAATAGCATTTTGG+GGG | - | chr6.4:2388405-2388424 | MS.gene47283:CDS | 30.0% |
| !!! | GAGTTTTTTTGGTTGTGATT+TGG | + | chr6.4:2387885-2387904 | None:intergenic | 30.0% |
| !!! | GGTTGGTTTAAATAGCATTT+TGG | - | chr6.4:2388402-2388421 | MS.gene47283:CDS | 30.0% |
| AACTTCGTAGATGAAATGTG+TGG | + | chr6.4:2388647-2388666 | None:intergenic | 35.0% | |
| ACAACACTAGCAAAGAAATC+AGG | + | chr6.4:2388355-2388374 | None:intergenic | 35.0% | |
| ACATTACTCTCACTAGGTAA+CGG | - | chr6.4:2388325-2388344 | MS.gene47283:CDS | 35.0% | |
| ACCAAGAAAACTCACTATAC+CGG | - | chr6.4:2388882-2388901 | MS.gene47283:CDS | 35.0% | |
| CAAGAAGATGTTTGTTTCCT+TGG | - | chr6.4:2389103-2389122 | MS.gene47283:CDS | 35.0% | |
| CAAGGAAACAAACATCTTCT+TGG | + | chr6.4:2389105-2389124 | None:intergenic | 35.0% | |
| CATCTACGAAGTTGACAAAA+AGG | - | chr6.4:2388654-2388673 | MS.gene47283:CDS | 35.0% | |
| ! | AAAGTAATTTGAAGCCGTGT+CGG | + | chr6.4:2388245-2388264 | None:intergenic | 35.0% |
| ! | CAGTTTTCTTCATTCACAAC+CGG | + | chr6.4:2388904-2388923 | None:intergenic | 35.0% |
| ! | CTAGGTGATTTGATAGCAAA+TGG | - | chr6.4:2389267-2389286 | MS.gene47283:CDS | 35.0% |
| ! | CTTGTTTATAAGGTTAGCCA+TGG | - | chr6.4:2389572-2389591 | MS.gene47283:CDS | 35.0% |
| ! | GAGTTGGAAGTGAAAGTATA+AGG | + | chr6.4:2387863-2387882 | None:intergenic | 35.0% |
| ! | GATTTTCAATGAGTGTGACA+TGG | - | chr6.4:2389136-2389155 | MS.gene47283:CDS | 35.0% |
| ! | GGTGTTAGTCCTTCAATTTT+AGG | - | chr6.4:2389216-2389235 | MS.gene47283:CDS | 35.0% |
| ! | GGTTTAAATAGCATTTTGGG+GGG | - | chr6.4:2388406-2388425 | MS.gene47283:CDS | 35.0% |
| ! | TACTTTTGCACATCACTAGA+AGG | - | chr6.4:2388259-2388278 | MS.gene47283:CDS | 35.0% |
| ! | TCCTAAGGATAGTTCACTTT+TGG | - | chr6.4:2389434-2389453 | MS.gene47283:CDS | 35.0% |
| ! | TTTGATAGCAAATGGTGCTA+TGG | - | chr6.4:2389275-2389294 | MS.gene47283:CDS | 35.0% |
| ! | TTTGTTTCCACAGCAGTTTT+AGG | - | chr6.4:2388436-2388455 | MS.gene47283:CDS | 35.0% |
| !! | AATGGTGCTATGGCTAAAAA+TGG | - | chr6.4:2389285-2389304 | MS.gene47283:CDS | 35.0% |
| !! | CCTAAGGATAGTTCACTTTT+GGG | - | chr6.4:2389435-2389454 | MS.gene47283:CDS | 35.0% |
| !! | CTAAGGATAGTTCACTTTTG+GGG | - | chr6.4:2389436-2389455 | MS.gene47283:CDS | 35.0% |
| !! | GAGGCTTGATAAGTTTTTAG+GGG | - | chr6.4:2389521-2389540 | MS.gene47283:CDS | 35.0% |
| !! | TTTTGGTTGTGATTTGGAGT+TGG | + | chr6.4:2387879-2387898 | None:intergenic | 35.0% |
| !!! | AGGAGAAGAGTGAGTTTTTT+TGG | + | chr6.4:2387896-2387915 | None:intergenic | 35.0% |
| !!! | GGGGACAATATTGTTTTTGA+TGG | - | chr6.4:2389455-2389474 | MS.gene47283:CDS | 35.0% |
| !!! | GTCACACACTACTTGTTTTA+TGG | - | chr6.4:2388194-2388213 | MS.gene47283:CDS | 35.0% |
| AATGTTACACCAGCTATGGT+TGG | + | chr6.4:2388310-2388329 | None:intergenic | 40.0% | |
| ACCTCTTGTTCTTTCAGCAT+GGG | - | chr6.4:2389386-2389405 | MS.gene47283:CDS | 40.0% | |
| AGTAGTGTGTGACCAAGAAT+TGG | + | chr6.4:2388187-2388206 | None:intergenic | 40.0% | |
| CAAGAATTGGCGAATTTCCA+AGG | + | chr6.4:2388174-2388193 | None:intergenic | 40.0% | |
| CACTTGTGAGAATTCTAGCA+TGG | + | chr6.4:2388021-2388040 | None:intergenic | 40.0% | |
| CCCAAAAGTGAACTATCCTT+AGG | + | chr6.4:2389438-2389457 | None:intergenic | 40.0% | |
| CGGTTGTGAATGAAGAAAAC+TGG | - | chr6.4:2388902-2388921 | MS.gene47283:CDS | 40.0% | |
| CTTGGAAATTCGCCAATTCT+TGG | - | chr6.4:2388172-2388191 | MS.gene47283:CDS | 40.0% | |
| GAATCCGGAATACCATTGTT+AGG | - | chr6.4:2388712-2388731 | MS.gene47283:CDS | 40.0% | |
| GAGTAATGTTACACCAGCTA+TGG | + | chr6.4:2388314-2388333 | None:intergenic | 40.0% | |
| GGAAACAAACATCTTCTTGG+TGG | + | chr6.4:2389102-2389121 | None:intergenic | 40.0% | |
| GGTGTAACATTACTCTCACT+AGG | - | chr6.4:2388319-2388338 | MS.gene47283:CDS | 40.0% | |
| GTAACTGATATAACCGCGTA+TGG | + | chr6.4:2388934-2388953 | None:intergenic | 40.0% | |
| TACCTCTTGTTCTTTCAGCA+TGG | - | chr6.4:2389385-2389404 | MS.gene47283:CDS | 40.0% | |
| TATGATGCCTAAAACTGCTG+TGG | + | chr6.4:2388446-2388465 | None:intergenic | 40.0% | |
| ! | ACCGGTATAGTGAGTTTTCT+TGG | + | chr6.4:2388886-2388905 | None:intergenic | 40.0% |
| ! | AGCATGGTTGAAGAGTTTTG+AGG | + | chr6.4:2388005-2388024 | None:intergenic | 40.0% |
| ! | ATAAGGTTAGCCATGGCAAT+TGG | - | chr6.4:2389579-2389598 | MS.gene47283:CDS | 40.0% |
| ! | GCTAAAAATGGTGGTGTTGA+TGG | - | chr6.4:2389297-2389316 | MS.gene47283:CDS | 40.0% |
| ! | GTTCTATCTTTTAGCCGACA+CGG | - | chr6.4:2388228-2388247 | MS.gene47283:CDS | 40.0% |
| ! | TGGAATTGTCTTTGGGAACA+TGG | - | chr6.4:2389050-2389069 | MS.gene47283:CDS | 40.0% |
| !! | ATTAAGAGCACCAATTGCCA+TGG | + | chr6.4:2389592-2389611 | None:intergenic | 40.0% |
| !! | CTTGATAAGTTTTTAGGGGC+TGG | - | chr6.4:2389525-2389544 | MS.gene47283:CDS | 40.0% |
| !! | TGCGAATAAAATCGGTGCTA+AGG | + | chr6.4:2388956-2388975 | None:intergenic | 40.0% |
| !!! | TTTTGATGGTAGGGGTACTT+TGG | - | chr6.4:2389469-2389488 | MS.gene47283:CDS | 40.0% |
| AAACTGGTCGAAACCATACG+CGG | - | chr6.4:2388918-2388937 | MS.gene47283:CDS | 45.0% | |
| AGACTATCTCCAACCATAGC+TGG | - | chr6.4:2388298-2388317 | MS.gene47283:CDS | 45.0% | |
| AGGGTTAACTGTCCTAGCTT+GGG | - | chr6.4:2389236-2389255 | MS.gene47283:CDS | 45.0% | |
| CACAAGTTCAAACAATGGCG+CGG | - | chr6.4:2388381-2388400 | MS.gene47283:CDS | 45.0% | |
| CCTCTTGTTCTTTCAGCATG+GGG | - | chr6.4:2389387-2389406 | MS.gene47283:CDS | 45.0% | |
| CTAGAGAATTTCCCCAAGCT+AGG | + | chr6.4:2389251-2389270 | None:intergenic | 45.0% | |
| CTAGCTTGGGGAAATTCTCT+AGG | - | chr6.4:2389249-2389268 | MS.gene47283:CDS | 45.0% | |
| GATGAAATGTGTGGCTGAGA+CGG | + | chr6.4:2388638-2388657 | None:intergenic | 45.0% | |
| TAGGGTTAACTGTCCTAGCT+TGG | - | chr6.4:2389235-2389254 | MS.gene47283:CDS | 45.0% | |
| TCGTCGGCATAACCTAACAA+TGG | + | chr6.4:2388727-2388746 | None:intergenic | 45.0% | |
| TGAAGAGGAAGGATGTGTTG+AGG | + | chr6.4:2387916-2387935 | None:intergenic | 45.0% | |
| TGTTTGTTTCCTTGGCTAGC+TGG | - | chr6.4:2389111-2389130 | MS.gene47283:CDS | 45.0% | |
| ! | GGTGCTATGGCTAAAAATGG+TGG | - | chr6.4:2389288-2389307 | MS.gene47283:CDS | 45.0% |
| !! | GCTGTTTCAGGTTGTTATGC+TGG | - | chr6.4:2389330-2389349 | MS.gene47283:CDS | 45.0% |
| !! | GGTGCACAAATTGCTGTTTC+AGG | - | chr6.4:2389318-2389337 | MS.gene47283:CDS | 45.0% |
| AGTTCAAACAATGGCGCGGT+TGG | - | chr6.4:2388385-2388404 | MS.gene47283:CDS | 50.0% | |
| CCCCATGCTGAAAGAACAAG+AGG | + | chr6.4:2389390-2389409 | None:intergenic | 50.0% | |
| GAAAATCCACCAGCTAGCCA+AGG | + | chr6.4:2389123-2389142 | None:intergenic | 50.0% | |
| GGGTTAACTGTCCTAGCTTG+GGG | - | chr6.4:2389237-2389256 | MS.gene47283:CDS | 50.0% | |
| ! | TTGTTTCCTTGGCTAGCTGG+TGG | - | chr6.4:2389114-2389133 | MS.gene47283:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 2387854 | 2389614 | 2387854 | ID=MS.gene47283 |
| chr6.4 | mRNA | 2387854 | 2389614 | 2387854 | ID=MS.gene47283.t1;Parent=MS.gene47283 |
| chr6.4 | exon | 2387854 | 2389614 | 2387854 | ID=MS.gene47283.t1.exon1;Parent=MS.gene47283.t1 |
| chr6.4 | CDS | 2387854 | 2389614 | 2387854 | ID=cds.MS.gene47283.t1;Parent=MS.gene47283.t1 |
| Gene Sequence |
| Protein sequence |
