AlfalfaGEDB | MS.gene47450

M. sativa cultivar XinJiangDaYe / MS.gene47450

KEGG: -
GO: -
PFAM: PF13301.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47450.t1	XP_024639171.1	93.3	238	13	3	1	235	1	238	3.00E-116	427.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47450.t1	A0A072VK24	93.3	238	13	3	1	235	1	238	2.1e-116	427.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene47450	0.802288	6.02E-49	-1.69E-46
MS.gene049217	MS.gene47450	0.819321	1.23E-52	-1.69E-46
MS.gene049285	MS.gene47450	0.809715	1.65E-50	-1.69E-46
MS.gene049427	MS.gene47450	0.801932	7.13E-49	-1.69E-46
MS.gene050163	MS.gene47450	0.821871	3.21E-53	-1.69E-46
MS.gene050165	MS.gene47450	0.81332	2.72E-51	-1.69E-46
MS.gene050333	MS.gene47450	0.828733	7.63E-55	-1.69E-46
MS.gene050612	MS.gene47450	0.805993	1.02E-49	-1.69E-46
MS.gene050675	MS.gene47450	0.817895	2.60E-52	-1.69E-46
MS.gene050767	MS.gene47450	0.822921	1.83E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47450.t1	MTR_1g063070	93.277	238	13	3	1	235	1	238	6.52e-148	412

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47450.t1	AT2G36885	86.957	161	21	0	74	234	95	255	1.20e-98	288
MS.gene47450.t1	AT2G36885	86.957	161	20	1	74	234	95	254	4.02e-97	284

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Find 63 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATACCAGCTAATAGCT+TGG	0.513187	1.4:+51894924	None:intergenic
AACATACCAGCTAATAGCTT+GGG	0.466091	1.4:+51894925	None:intergenic
AAGAAATGTTCATGGCATCT+TGG	0.414269	1.4:-51894022	MS.gene47450:CDS
AAGGCCAATAACGCCTGTAA+CGG	0.591757	1.4:+51894688	None:intergenic
AAGGCCTAATTGAAGTCCAA+GGG	0.629303	1.4:+51893963	None:intergenic
AATGATATGCAGGGAAATCC+TGG	0.444461	1.4:-51894048	MS.gene47450:intron
ACCATTACCTCAAACAGTGA+AGG	0.611894	1.4:+51894638	None:intergenic
ACCTCCAGGTAAGAGAGCAG+CGG	0.686187	1.4:+51895674	None:intergenic
ACGGAGATTCATGATAATGG+AGG	0.689473	1.4:+51895869	None:intergenic
AGAAATGTTCATGGCATCTT+GGG	0.463806	1.4:-51894021	MS.gene47450:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACACAGAAGCTATATAAGAA+AGG	+	chr1.4:51894589-51894608	None:intergenic	30.0%
GAATATATAACCACATATGG+TGG	+	chr1.4:51895490-51895509	None:intergenic	30.0%
TAAACCAACATGTTGAACAT+TGG	+	chr1.4:51895449-51895468	None:intergenic	30.0%
TATATTACCTTCACTGTTTG+AGG	-	chr1.4:51895197-51895216	MS.gene47450:intron	30.0%
TGAAATGAAATTGGTGAAGA+TGG	+	chr1.4:51893999-51894018	None:intergenic	30.0%
TGGTAACAAATTCAATGATG+AGG	+	chr1.4:51895745-51895764	None:intergenic	30.0%
AAACATACCAGCTAATAGCT+TGG	+	chr1.4:51894921-51894940	None:intergenic	35.0%
AACATACCAGCTAATAGCTT+GGG	+	chr1.4:51894920-51894939	None:intergenic	35.0%
AAGAAATGTTCATGGCATCT+TGG	-	chr1.4:51895820-51895839	MS.gene47450:CDS	35.0%
AGAAATGTTCATGGCATCTT+GGG	-	chr1.4:51895821-51895840	MS.gene47450:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	51893954	51895910	51893954	ID=MS.gene47450
chr1.4	mRNA	51893954	51895910	51893954	ID=MS.gene47450.t1;Parent=MS.gene47450
chr1.4	exon	51895676	51895910	51895676	ID=MS.gene47450.t1.exon1;Parent=MS.gene47450.t1
chr1.4	CDS	51895676	51895910	51895676	ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1
chr1.4	exon	51895498	51895595	51895498	ID=MS.gene47450.t1.exon2;Parent=MS.gene47450.t1
chr1.4	CDS	51895498	51895595	51895498	ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1
chr1.4	exon	51895323	51895394	51895323	ID=MS.gene47450.t1.exon3;Parent=MS.gene47450.t1
chr1.4	CDS	51895323	51895394	51895323	ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1
chr1.4	exon	51894853	51894977	51894853	ID=MS.gene47450.t1.exon4;Parent=MS.gene47450.t1
chr1.4	CDS	51894853	51894977	51894853	ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1
chr1.4	exon	51894646	51894718	51894646	ID=MS.gene47450.t1.exon5;Parent=MS.gene47450.t1
chr1.4	CDS	51894646	51894718	51894646	ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1
chr1.4	exon	51893954	51894058	51893954	ID=MS.gene47450.t1.exon6;Parent=MS.gene47450.t1
chr1.4	CDS	51893954	51894058	51893954	ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1

Gene Sequence

>MS.gene47450

ATGGCAATGCTAGCTGCTACCTCCATTATCATGAATCTCCGTCCATCTTCACCAATTTCATTTCATACTTCGCGCCAAATTTCCTCTCTTGGCGCAGCAACTCGCCTCCACCTCAAATGTCACGCCACAAACCAAGACTCACCCCAATCCATAGAATCAACACCAAAAAGTGAAACAATCTTACACTCTTTCTCTCCATTGTCTTTACTTTACGCCGCTGCTCTCTTACCTGGAGGTACATTTTACAATTCAATCCTTAATTCTAATTCATTTCAAAACATAATTAATGTTTAATAATCAAACTAAACTAAACAGATGGAGCTGTGAGATCTGCGTTTGCGCCTTTCGTTGAGATAGTCAAGTCGTTGAATCTGCCTGACTGGCTTGTACATTGGGGTCACCCTGCCAACATGGTTAGTTAAATAAATAAATAATAACTGATTTCAGTTATAGAAAGAGCGTTGTTTAGTTAAGTTAGTTAATTAACGTTTTCTGTCACATGAATTGCTCTTGCAGGCAGTGGTGCTTTTTGCTATGGGTGGTTATGGTACCTATCTGGGTTTTCGCATTCGATATTCCGATGATGTGGTACACCAGCTACTTTGATTATTAATCAAGTTACAAGTTTTATTCCTTTCTTATATAGCTTCTGTGTTTTTATATTGAAATTTGTAAAATAATCTATAACAAAGCCACAAAACAAAAGTAAATAACTTGATTTGTTTTGTGACTGAAAATGAAGTGCTAGTTGAAATATTGTACTCTTTTGGGTTTTTTCTAATTGTTTCTTTTAAACAATTAGATTGAATTTAAATATAGAAGCAAACTTATATGGTAAAATAATTAAACTTGATGGATTGTTTTTGCGTCATAAAAATTAATTCAATACAATCTGCGAACCCAAGTATTTCATATCTTGTTAAATATTTGTAGGAGGAAAAGGCCAAGGCCAAGGACTTGCATCCCAAGCTATTAGCTGGTATGTTTTTCTTCTTTGCTCTTGGAGCTACTGGTGGAGTAACATCTCTACTCACATCAGATAAACCCATTTTTGACAGGTATTTACATTCAGCAGCTTCTCTTTAACCTGAAGATTATTGCTTGTTAATTTACTTAAATTTCCTATTAGATAATTTGTTAATTCGTTTTCAAGCAAAAAGTGATAGTCTTATATCATCTTGTTTGCATACAGTCCTCATGCCGTTACAGGCGTTATTGGCCTTGCTTTGTTGACAATACAGACTATATTACCTTCACTGTTTGAGGTAATGGTTATTTCCTTTGAGCTAACTTGTTTTTATTTTTTTTTTCCTATTTTTTAATCCATGGAATCTTGAATCAGTGTTACCTGACCATAGATAGATACTCATTTATCATGCATTCTTCACATTCACATTCACATAATGTCATCAACACAAAAATCTGTTTATTGAATAAAAATCGACGTGTTTTGCAAGCTTTGTAGCACCAACACTTTATATTGAAAGTGTGTCCAATGTTCAACATGTTGGTTTATGGCACACTGACACGACACCACCATATGTGGTTATATATTCAATCACTTTCATTTTCTTAAATTATAATTGGTGTCTTCATGCCAATGCAATTATTGTCTCCATGTCTGCGTCGGTGCTCATAGCTTAAGAGTGTCCTTGTGCAAATAGTTGCAGGGTCACAATCTAGTTGTTAAGTACGTTGTTAAGAAGCTAATACACCAAAGTAACTTGTGCATCAGCTGCAAATGAGTTCAAAGCTTTACATTGTTTATTTGTTTGCTATCCACTCTTTCCTCATCATTGAATTTGTTACCACTTTTCACCCCCTCACTTTCAGTTACCTGAATGATATGCAGGGAAATCCTGGATTAAGAAATGTTCATGGCATCTTGGGTAGTAGTATCATGACACTTTTTCTTGTCCATGCTGCCCTTGGACTTCAATTAGGCCTTAGTTCATAA

Protein sequence

>MS.gene47450.t1

MAMLAATSIIMNLRPSSPISFHTSRQISSLGAATRLHLKCHATNQDSPQSIESTPKSETILHSFSPLSLLYAAALLPGDGAVRSAFAPFVEIVKSLNLPDWLVHWGHPANMAVVLFAMGGYGTYLGFRIRYSDDVEEKAKAKDLHPKLLAGMFFFFALGATGGVTSLLTSDKPIFDSPHAVTGVIGLALLTIQTILPSLFEGNPGLRNVHGILGSSIMTLFLVHAALGLQLGLSS