Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47450.t1 | XP_024639171.1 | 93.3 | 238 | 13 | 3 | 1 | 235 | 1 | 238 | 3.00E-116 | 427.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47450.t1 | A0A072VK24 | 93.3 | 238 | 13 | 3 | 1 | 235 | 1 | 238 | 2.1e-116 | 427.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene47450 | 0.802288 | 6.02E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene47450 | 0.819321 | 1.23E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene47450 | 0.809715 | 1.65E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene47450 | 0.801932 | 7.13E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene47450 | 0.821871 | 3.21E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene47450 | 0.81332 | 2.72E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene47450 | 0.828733 | 7.63E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene47450 | 0.805993 | 1.02E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene47450 | 0.817895 | 2.60E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene47450 | 0.822921 | 1.83E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene47450 | 0.82629 | 2.94E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene47450 | 0.825473 | 4.60E-54 | -1.69E-46 |
| MS.gene051228 | MS.gene47450 | 0.806904 | 6.56E-50 | -1.69E-46 |
| MS.gene051434 | MS.gene47450 | 0.97048 | 1.11E-131 | -1.69E-46 |
| MS.gene051810 | MS.gene47450 | 0.828127 | 1.07E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene47450 | 0.822306 | 2.54E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene47450 | 0.826225 | 3.05E-54 | -1.69E-46 |
| MS.gene052379 | MS.gene47450 | 0.819718 | 1.00E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene47450 | 0.811862 | 5.66E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene47450 | 0.824239 | 8.99E-54 | -1.69E-46 |
| MS.gene052916 | MS.gene47450 | 0.804555 | 2.04E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene47450 | 0.807697 | 4.45E-50 | -1.69E-46 |
| MS.gene053107 | MS.gene47450 | 0.80172 | 7.88E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene47450 | 0.814244 | 1.70E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene47450 | 0.824339 | 8.52E-54 | -1.69E-46 |
| MS.gene054376 | MS.gene47450 | 0.818719 | 1.69E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene47450 | 0.811074 | 8.40E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene47450 | 0.812482 | 4.15E-51 | -1.69E-46 |
| MS.gene054802 | MS.gene47450 | 0.802943 | 4.41E-49 | -1.69E-46 |
| MS.gene054803 | MS.gene47450 | 0.808125 | 3.61E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene47450 | 0.808111 | 3.64E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene47450 | 0.813035 | 3.14E-51 | -1.69E-46 |
| MS.gene055397 | MS.gene47450 | 0.816268 | 6.04E-52 | -1.69E-46 |
| MS.gene055499 | MS.gene47450 | 0.808049 | 3.75E-50 | -1.69E-46 |
| MS.gene055636 | MS.gene47450 | 0.824433 | 8.09E-54 | -1.69E-46 |
| MS.gene055638 | MS.gene47450 | 0.817781 | 2.76E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene47450 | 0.854263 | 1.38E-61 | -1.69E-46 |
| MS.gene055722 | MS.gene47450 | 0.820604 | 6.28E-53 | -1.69E-46 |
| MS.gene05592 | MS.gene47450 | 0.807744 | 4.35E-50 | -1.69E-46 |
| MS.gene056083 | MS.gene47450 | 0.814666 | 1.37E-51 | -1.69E-46 |
| MS.gene056796 | MS.gene47450 | 0.820537 | 6.51E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene47450 | 0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene47450 | 0.817965 | 2.51E-52 | -1.69E-46 |
| MS.gene057331 | MS.gene47450 | 0.851049 | 1.14E-60 | -1.69E-46 |
| MS.gene057416 | MS.gene47450 | 0.81198 | 5.34E-51 | -1.69E-46 |
| MS.gene058323 | MS.gene47450 | 0.807146 | 5.83E-50 | -1.69E-46 |
| MS.gene058723 | MS.gene47450 | 0.807207 | 5.66E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene47450 | 0.817274 | 3.59E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene47450 | 0.808043 | 3.76E-50 | -1.69E-46 |
| MS.gene059029 | MS.gene47450 | 0.838411 | 2.92E-57 | -1.69E-46 |
| MS.gene059536 | MS.gene47450 | 0.805641 | 1.21E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene47450 | 0.80812 | 3.62E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene47450 | 0.812786 | 3.56E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene47450 | 0.821648 | 3.61E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene47450 | 0.857781 | 1.29E-62 | -1.69E-46 |
| MS.gene060193 | MS.gene47450 | 0.805352 | 1.39E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene47450 | 0.806704 | 7.23E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene47450 | 0.834043 | 3.77E-56 | -1.69E-46 |
| MS.gene061200 | MS.gene47450 | 0.845984 | 2.89E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47450.t1 | MTR_1g063070 | 93.277 | 238 | 13 | 3 | 1 | 235 | 1 | 238 | 6.52e-148 | 412 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47450.t1 | AT2G36885 | 86.957 | 161 | 21 | 0 | 74 | 234 | 95 | 255 | 1.20e-98 | 288 |
| MS.gene47450.t1 | AT2G36885 | 86.957 | 161 | 20 | 1 | 74 | 234 | 95 | 254 | 4.02e-97 | 284 |
Find 63 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGGTTATGGTACCTATC+TGG | 0.201420 | 1.4:-51895352 | MS.gene47450:CDS |
| CATGCCGTTACAGGCGTTAT+TGG | 0.237578 | 1.4:-51894692 | MS.gene47450:CDS |
| GCCTGACTGGCTTGTACATT+GGG | 0.244545 | 1.4:-51895515 | MS.gene47450:CDS |
| TTCTTTGCTCTTGGAGCTAC+TGG | 0.272209 | 1.4:-51894898 | MS.gene47450:CDS |
| CTGCGCCAAGAGAGGAAATT+TGG | 0.284374 | 1.4:+51895814 | None:intergenic |
| TGGTGTTGATTCTATGGATT+GGG | 0.307901 | 1.4:+51895746 | None:intergenic |
| TACAGTCCTCATGCCGTTAC+AGG | 0.314786 | 1.4:-51894701 | MS.gene47450:intron |
| GCTGCCCTTGGACTTCAATT+AGG | 0.329493 | 1.4:-51893967 | MS.gene47450:CDS |
| GGGATGCAAGTCCTTGGCCT+TGG | 0.338833 | 1.4:+51894945 | None:intergenic |
| TCGCGCCAAATTTCCTCTCT+TGG | 0.359067 | 1.4:-51895819 | MS.gene47450:CDS |
| CGCGAAGTATGAAATGAAAT+TGG | 0.363367 | 1.4:+51895837 | None:intergenic |
| TATATTACCTTCACTGTTTG+AGG | 0.381332 | 1.4:-51894645 | MS.gene47450:intron |
| TGGACGGAGATTCATGATAA+TGG | 0.384959 | 1.4:+51895866 | None:intergenic |
| TTTCTTGTCCATGCTGCCCT+TGG | 0.385296 | 1.4:-51893979 | MS.gene47450:CDS |
| TAAATATTTGTAGGAGGAAA+AGG | 0.386374 | 1.4:-51894968 | MS.gene47450:intron |
| TGCCTGACTGGCTTGTACAT+TGG | 0.392543 | 1.4:-51895516 | MS.gene47450:CDS |
| TTGGTGTTGATTCTATGGAT+TGG | 0.404513 | 1.4:+51895745 | None:intergenic |
| CTATGGATTGGGGTGAGTCT+TGG | 0.408490 | 1.4:+51895757 | None:intergenic |
| CCATGAACATTTCTTAATCC+AGG | 0.412779 | 1.4:+51894030 | None:intergenic |
| AAGAAATGTTCATGGCATCT+TGG | 0.414269 | 1.4:-51894022 | MS.gene47450:CDS |
| GGTGGTTATGGTACCTATCT+GGG | 0.422512 | 1.4:-51895351 | MS.gene47450:CDS |
| CCCCAATGTACAAGCCAGTC+AGG | 0.431799 | 1.4:+51895514 | None:intergenic |
| AATGATATGCAGGGAAATCC+TGG | 0.444461 | 1.4:-51894048 | MS.gene47450:intron |
| ATTTAACTAACCATGTTGGC+AGG | 0.445888 | 1.4:+51895487 | None:intergenic |
| TTGGGGTGAGTCTTGGTTTG+TGG | 0.447264 | 1.4:+51895764 | None:intergenic |
| AGAAATGTTCATGGCATCTT+GGG | 0.463806 | 1.4:-51894021 | MS.gene47450:CDS |
| AACATACCAGCTAATAGCTT+GGG | 0.466091 | 1.4:+51894925 | None:intergenic |
| GAAGCTGTATTTATGAACTA+AGG | 0.469918 | 1.4:+51893944 | None:intergenic |
| TCGAATGCGAAAACCCAGAT+AGG | 0.472079 | 1.4:+51895338 | None:intergenic |
| TGAAATGAAATTGGTGAAGA+TGG | 0.472785 | 1.4:+51895846 | None:intergenic |
| CCTGGATTAAGAAATGTTCA+TGG | 0.473102 | 1.4:-51894030 | MS.gene47450:CDS |
| TACGCCGCTGCTCTCTTACC+TGG | 0.482775 | 1.4:-51895678 | MS.gene47450:CDS |
| TTTGCTCTTGGAGCTACTGG+TGG | 0.495588 | 1.4:-51894895 | MS.gene47450:CDS |
| AGTCGTTGAATCTGCCTGAC+TGG | 0.497666 | 1.4:-51895528 | MS.gene47450:CDS |
| AAACATACCAGCTAATAGCT+TGG | 0.513187 | 1.4:+51894924 | None:intergenic |
| TGGCGTGACATTTGAGGTGG+AGG | 0.520546 | 1.4:+51895784 | None:intergenic |
| TAGCTTGGGATGCAAGTCCT+TGG | 0.521656 | 1.4:+51894939 | None:intergenic |
| TTGCATCCCAAGCTATTAGC+TGG | 0.539795 | 1.4:-51894931 | MS.gene47450:CDS |
| GGTTTGTGGCGTGACATTTG+AGG | 0.543470 | 1.4:+51895778 | None:intergenic |
| TAAGGCCTAATTGAAGTCCA+AGG | 0.569878 | 1.4:+51893962 | None:intergenic |
| GCGAGTTGCTGCGCCAAGAG+AGG | 0.579896 | 1.4:+51895806 | None:intergenic |
| GGAGGAAAAGGCCAAGGCCA+AGG | 0.580312 | 1.4:-51894956 | MS.gene47450:CDS |
| ATTTATTTAACTAACCATGT+TGG | 0.587938 | 1.4:+51895483 | None:intergenic |
| TTGGGGTCACCCTGCCAACA+TGG | 0.588484 | 1.4:-51895497 | MS.gene47450:intron |
| GGTGTTGATTCTATGGATTG+GGG | 0.590362 | 1.4:+51895747 | None:intergenic |
| AAGGCCAATAACGCCTGTAA+CGG | 0.591757 | 1.4:+51894688 | None:intergenic |
| TAGCTGGTGTACCACATCAT+CGG | 0.598201 | 1.4:+51895311 | None:intergenic |
| TTGTGGCGTGACATTTGAGG+TGG | 0.601719 | 1.4:+51895781 | None:intergenic |
| TTTAACTAACCATGTTGGCA+GGG | 0.602404 | 1.4:+51895488 | None:intergenic |
| ATTGAAGTCCAAGGGCAGCA+TGG | 0.606273 | 1.4:+51893971 | None:intergenic |
| ACCATTACCTCAAACAGTGA+AGG | 0.611894 | 1.4:+51894638 | None:intergenic |
| ATAACGCCTGTAACGGCATG+AGG | 0.613254 | 1.4:+51894695 | None:intergenic |
| GACTTGACTATCTCAACGAA+AGG | 0.613541 | 1.4:+51895547 | None:intergenic |
| TCTGTATTGTCAACAAAGCA+AGG | 0.616586 | 1.4:+51894669 | None:intergenic |
| TTTGTAGGAGGAAAAGGCCA+AGG | 0.623008 | 1.4:-51894962 | MS.gene47450:intron |
| AAGGCCTAATTGAAGTCCAA+GGG | 0.629303 | 1.4:+51893963 | None:intergenic |
| ATGAAATTGGTGAAGATGGA+CGG | 0.635618 | 1.4:+51895850 | None:intergenic |
| CATTCGATATTCCGATGATG+TGG | 0.635671 | 1.4:-51895322 | MS.gene47450:intron |
| GCGGCGTAAAGTAAAGACAA+TGG | 0.650565 | 1.4:+51895693 | None:intergenic |
| CCTGACTGGCTTGTACATTG+GGG | 0.664667 | 1.4:-51895514 | MS.gene47450:CDS |
| GCCGCTGCTCTCTTACCTGG+AGG | 0.685113 | 1.4:-51895675 | MS.gene47450:intron |
| ACCTCCAGGTAAGAGAGCAG+CGG | 0.686187 | 1.4:+51895674 | None:intergenic |
| ACGGAGATTCATGATAATGG+AGG | 0.689473 | 1.4:+51895869 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTCTTAAATTATAAT+TGG | - | chr1.4:51895518-51895537 | MS.gene47450:CDS | 10.0% |
| !! | ATATCTTGTTAAATATTTGT+AGG | - | chr1.4:51894865-51894884 | MS.gene47450:CDS | 15.0% |
| !! | GAATTAACAAATTATCTAAT+AGG | + | chr1.4:51895078-51895097 | None:intergenic | 15.0% |
| !!! | TTTGAAATGAATTAGAATTA+AGG | + | chr1.4:51894211-51894230 | None:intergenic | 15.0% |
| !! | AATATAGAAGCAAACTTATA+TGG | - | chr1.4:51894766-51894785 | MS.gene47450:intron | 20.0% |
| !! | ATTGAATATATAACCACATA+TGG | + | chr1.4:51895493-51895512 | None:intergenic | 20.0% |
| !! | ATTTATTTAACTAACCATGT+TGG | + | chr1.4:51894362-51894381 | None:intergenic | 20.0% |
| !! | GGTAAAATAATTAAACTTGA+TGG | - | chr1.4:51894787-51894806 | MS.gene47450:intron | 20.0% |
| !! | TAACAAGATATGAAATACTT+GGG | + | chr1.4:51894856-51894875 | None:intergenic | 20.0% |
| !! | TTAACAAGATATGAAATACT+TGG | + | chr1.4:51894857-51894876 | None:intergenic | 20.0% |
| !!! | AGTTATTTACTTTTGTTTTG+TGG | + | chr1.4:51894649-51894668 | None:intergenic | 20.0% |
| !!! | TTGAAATATTGTACTCTTTT+GGG | - | chr1.4:51894702-51894721 | MS.gene47450:intron | 20.0% |
| !!! | TTTTCCTATTTTTTAATCCA+TGG | - | chr1.4:51895260-51895279 | MS.gene47450:intron | 20.0% |
| ! | ACACTTTCAATATAAAGTGT+TGG | + | chr1.4:51895424-51895443 | None:intergenic | 25.0% |
| ! | ATAAAAACAAGTTAGCTCAA+AGG | + | chr1.4:51895235-51895254 | None:intergenic | 25.0% |
| ! | ATCAAACTAAACTAAACAGA+TGG | - | chr1.4:51894250-51894269 | MS.gene47450:intron | 25.0% |
| ! | ATGTAAATACCTGTCAAAAA+TGG | + | chr1.4:51895002-51895021 | None:intergenic | 25.0% |
| ! | ATTAACAAGCAATAATCTTC+AGG | + | chr1.4:51895043-51895062 | None:intergenic | 25.0% |
| ! | GATAAATGAGTATCTATCTA+TGG | + | chr1.4:51895309-51895328 | None:intergenic | 25.0% |
| ! | TAAATATTTGTAGGAGGAAA+AGG | - | chr1.4:51894874-51894893 | MS.gene47450:CDS | 25.0% |
| ! | TCTTGTTAAATATTTGTAGG+AGG | - | chr1.4:51894868-51894887 | MS.gene47450:CDS | 25.0% |
| ! | TGATTAATAATCAAAGTAGC+TGG | + | chr1.4:51894550-51894569 | None:intergenic | 25.0% |
| ! | TGTAAATACCTGTCAAAAAT+GGG | + | chr1.4:51895001-51895020 | None:intergenic | 25.0% |
| !! | GATTCCATGGATTAAAAAAT+AGG | + | chr1.4:51895267-51895286 | None:intergenic | 25.0% |
| !! | GTTGAAATATTGTACTCTTT+TGG | - | chr1.4:51894701-51894720 | MS.gene47450:intron | 25.0% |
| !!! | TGTAAGATTGTTTCACTTTT+TGG | + | chr1.4:51894119-51894138 | None:intergenic | 25.0% |
| ACACAGAAGCTATATAAGAA+AGG | + | chr1.4:51894589-51894608 | None:intergenic | 30.0% | |
| GAATATATAACCACATATGG+TGG | + | chr1.4:51895490-51895509 | None:intergenic | 30.0% | |
| TAAACCAACATGTTGAACAT+TGG | + | chr1.4:51895449-51895468 | None:intergenic | 30.0% | |
| TATATTACCTTCACTGTTTG+AGG | - | chr1.4:51895197-51895216 | MS.gene47450:intron | 30.0% | |
| TGAAATGAAATTGGTGAAGA+TGG | + | chr1.4:51893999-51894018 | None:intergenic | 30.0% | |
| TGGTAACAAATTCAATGATG+AGG | + | chr1.4:51895745-51895764 | None:intergenic | 30.0% | |
| ! | ATGTTTTTCTTCTTTGCTCT+TGG | - | chr1.4:51894935-51894954 | MS.gene47450:CDS | 30.0% |
| !! | ATGTTCAACATGTTGGTTTA+TGG | - | chr1.4:51895449-51895468 | MS.gene47450:intron | 30.0% |
| !!! | ACTTTTTGGTGTTGATTCTA+TGG | + | chr1.4:51894105-51894124 | None:intergenic | 30.0% |
| AAACATACCAGCTAATAGCT+TGG | + | chr1.4:51894921-51894940 | None:intergenic | 35.0% | |
| AACATACCAGCTAATAGCTT+GGG | + | chr1.4:51894920-51894939 | None:intergenic | 35.0% | |
| AAGAAATGTTCATGGCATCT+TGG | - | chr1.4:51895820-51895839 | MS.gene47450:CDS | 35.0% | |
| AGAAATGTTCATGGCATCTT+GGG | - | chr1.4:51895821-51895840 | MS.gene47450:CDS | 35.0% | |
| AGTTACCTGAATGATATGCA+GGG | - | chr1.4:51895785-51895804 | MS.gene47450:CDS | 35.0% | |
| ATGAAATTGGTGAAGATGGA+CGG | + | chr1.4:51893995-51894014 | None:intergenic | 35.0% | |
| ATGAGTATCTATCTATGGTC+AGG | + | chr1.4:51895304-51895323 | None:intergenic | 35.0% | |
| ATTCAATGATGAGGAAAGAG+TGG | + | chr1.4:51895736-51895755 | None:intergenic | 35.0% | |
| ATTCAGGTAACTGAAAGTGA+GGG | + | chr1.4:51895777-51895796 | None:intergenic | 35.0% | |
| ATTTAACTAACCATGTTGGC+AGG | + | chr1.4:51894358-51894377 | None:intergenic | 35.0% | |
| CATGGAGACAATAATTGCAT+TGG | + | chr1.4:51895554-51895573 | None:intergenic | 35.0% | |
| CCATGAACATTTCTTAATCC+AGG | + | chr1.4:51895815-51895834 | None:intergenic | 35.0% | |
| CCTGGATTAAGAAATGTTCA+TGG | - | chr1.4:51895812-51895831 | MS.gene47450:CDS | 35.0% | |
| CGCGAAGTATGAAATGAAAT+TGG | + | chr1.4:51894008-51894027 | None:intergenic | 35.0% | |
| GAATTGTAAAATGTACCTCC+AGG | + | chr1.4:51894185-51894204 | None:intergenic | 35.0% | |
| TCTGTATTGTCAACAAAGCA+AGG | + | chr1.4:51895176-51895195 | None:intergenic | 35.0% | |
| TTTAACTAACCATGTTGGCA+GGG | + | chr1.4:51894357-51894376 | None:intergenic | 35.0% | |
| !! | AACACTGATTCAAGATTCCA+TGG | + | chr1.4:51895280-51895299 | None:intergenic | 35.0% |
| !! | CAGATAAACCCATTTTTGAC+AGG | - | chr1.4:51894990-51895009 | MS.gene47450:intron | 35.0% |
| !! | TGGTGTTGATTCTATGGATT+GGG | + | chr1.4:51894099-51894118 | None:intergenic | 35.0% |
| !! | TTGGTGTTGATTCTATGGAT+TGG | + | chr1.4:51894100-51894119 | None:intergenic | 35.0% |
| AAGGCCTAATTGAAGTCCAA+GGG | + | chr1.4:51895882-51895901 | None:intergenic | 40.0% | |
| AATGATATGCAGGGAAATCC+TGG | - | chr1.4:51895794-51895813 | MS.gene47450:CDS | 40.0% | |
| ACCATTACCTCAAACAGTGA+AGG | + | chr1.4:51895207-51895226 | None:intergenic | 40.0% | |
| AGCTGATGCACAAGTTACTT+TGG | + | chr1.4:51895671-51895690 | None:intergenic | 40.0% | |
| CAGTTACCTGAATGATATGC+AGG | - | chr1.4:51895784-51895803 | MS.gene47450:CDS | 40.0% | |
| CATTCAGGTAACTGAAAGTG+AGG | + | chr1.4:51895778-51895797 | None:intergenic | 40.0% | |
| CATTCGATATTCCGATGATG+TGG | - | chr1.4:51894520-51894539 | MS.gene47450:intron | 40.0% | |
| GACTTGACTATCTCAACGAA+AGG | + | chr1.4:51894298-51894317 | None:intergenic | 40.0% | |
| GATTTCCCTGCATATCATTC+AGG | + | chr1.4:51895793-51895812 | None:intergenic | 40.0% | |
| GTGTCCAATGTTCAACATGT+TGG | - | chr1.4:51895442-51895461 | MS.gene47450:intron | 40.0% | |
| TAAGGCCTAATTGAAGTCCA+AGG | + | chr1.4:51895883-51895902 | None:intergenic | 40.0% | |
| TCCTTGTGCAAATAGTTGCA+GGG | - | chr1.4:51895603-51895622 | MS.gene47450:intron | 40.0% | |
| TGGACGGAGATTCATGATAA+TGG | + | chr1.4:51893979-51893998 | None:intergenic | 40.0% | |
| TTCAGGTAACTGAAAGTGAG+GGG | + | chr1.4:51895776-51895795 | None:intergenic | 40.0% | |
| ! | ACCTTCACTGTTTGAGGTAA+TGG | - | chr1.4:51895203-51895222 | MS.gene47450:intron | 40.0% |
| !! | ACGGAGATTCATGATAATGG+AGG | + | chr1.4:51893976-51893995 | None:intergenic | 40.0% |
| !! | CTTTTTGCTATGGGTGGTTA+TGG | - | chr1.4:51894479-51894498 | MS.gene47450:intron | 40.0% |
| !! | GGTGTTGATTCTATGGATTG+GGG | + | chr1.4:51894098-51894117 | None:intergenic | 40.0% |
| AAGGCCAATAACGCCTGTAA+CGG | + | chr1.4:51895157-51895176 | None:intergenic | 45.0% | |
| ACCCTGCAACTATTTGCACA+AGG | + | chr1.4:51895607-51895626 | None:intergenic | 45.0% | |
| GCGGCGTAAAGTAAAGACAA+TGG | + | chr1.4:51894152-51894171 | None:intergenic | 45.0% | |
| GGTGGTTATGGTACCTATCT+GGG | - | chr1.4:51894491-51894510 | MS.gene47450:intron | 45.0% | |
| GTCACATGAATTGCTCTTGC+AGG | - | chr1.4:51894448-51894467 | MS.gene47450:intron | 45.0% | |
| GTCCTTGTGCAAATAGTTGC+AGG | - | chr1.4:51895602-51895621 | MS.gene47450:intron | 45.0% | |
| TAGCTGGTGTACCACATCAT+CGG | + | chr1.4:51894534-51894553 | None:intergenic | 45.0% | |
| TATTGTCTCCATGTCTGCGT+CGG | - | chr1.4:51895561-51895580 | MS.gene47450:CDS | 45.0% | |
| TCAGGTAACTGAAAGTGAGG+GGG | + | chr1.4:51895775-51895794 | None:intergenic | 45.0% | |
| TCGAATGCGAAAACCCAGAT+AGG | + | chr1.4:51894507-51894526 | None:intergenic | 45.0% | |
| TTCTTTGCTCTTGGAGCTAC+TGG | - | chr1.4:51894944-51894963 | MS.gene47450:CDS | 45.0% | |
| TTGCATCCCAAGCTATTAGC+TGG | - | chr1.4:51894911-51894930 | MS.gene47450:CDS | 45.0% | |
| TTTGTAGGAGGAAAAGGCCA+AGG | - | chr1.4:51894880-51894899 | MS.gene47450:CDS | 45.0% | |
| !! | GCAGTGGTGCTTTTTGCTAT+GGG | - | chr1.4:51894470-51894489 | MS.gene47450:intron | 45.0% |
| AGTCGTTGAATCTGCCTGAC+TGG | - | chr1.4:51894314-51894333 | MS.gene47450:intron | 50.0% | |
| ATAACGCCTGTAACGGCATG+AGG | + | chr1.4:51895150-51895169 | None:intergenic | 50.0% | |
| ATTGAAGTCCAAGGGCAGCA+TGG | + | chr1.4:51895874-51895893 | None:intergenic | 50.0% | |
| CATGCCGTTACAGGCGTTAT+TGG | - | chr1.4:51895150-51895169 | MS.gene47450:intron | 50.0% | |
| CTGCGCCAAGAGAGGAAATT+TGG | + | chr1.4:51894031-51894050 | None:intergenic | 50.0% | |
| GAAAGTGAGGGGGTGAAAAG+TGG | + | chr1.4:51895765-51895784 | None:intergenic | 50.0% | |
| GCTGCCCTTGGACTTCAATT+AGG | - | chr1.4:51895875-51895894 | MS.gene47450:CDS | 50.0% | |
| GGGTGGTTATGGTACCTATC+TGG | - | chr1.4:51894490-51894509 | MS.gene47450:intron | 50.0% | |
| GGTTTGTGGCGTGACATTTG+AGG | + | chr1.4:51894067-51894086 | None:intergenic | 50.0% | |
| TACAGTCCTCATGCCGTTAC+AGG | - | chr1.4:51895141-51895160 | MS.gene47450:intron | 50.0% | |
| TAGCTTGGGATGCAAGTCCT+TGG | + | chr1.4:51894906-51894925 | None:intergenic | 50.0% | |
| TCGCGCCAAATTTCCTCTCT+TGG | - | chr1.4:51894023-51894042 | MS.gene47450:CDS | 50.0% | |
| TGAATTGCTCTTGCAGGCAG+TGG | - | chr1.4:51894454-51894473 | MS.gene47450:intron | 50.0% | |
| TGACACGACACCACCATATG+TGG | - | chr1.4:51895477-51895496 | MS.gene47450:intron | 50.0% | |
| TTGTGGCGTGACATTTGAGG+TGG | + | chr1.4:51894064-51894083 | None:intergenic | 50.0% | |
| TTTCTTGTCCATGCTGCCCT+TGG | - | chr1.4:51895863-51895882 | MS.gene47450:CDS | 50.0% | |
| TTTGCTCTTGGAGCTACTGG+TGG | - | chr1.4:51894947-51894966 | MS.gene47450:CDS | 50.0% | |
| ! | TTGGGGTGAGTCTTGGTTTG+TGG | + | chr1.4:51894081-51894100 | None:intergenic | 50.0% |
| !! | CCTGACTGGCTTGTACATTG+GGG | - | chr1.4:51894328-51894347 | MS.gene47450:intron | 50.0% |
| !! | CTATGGATTGGGGTGAGTCT+TGG | + | chr1.4:51894088-51894107 | None:intergenic | 50.0% |
| !! | GCCTGACTGGCTTGTACATT+GGG | - | chr1.4:51894327-51894346 | MS.gene47450:intron | 50.0% |
| !! | GGCAGTGGTGCTTTTTGCTA+TGG | - | chr1.4:51894469-51894488 | MS.gene47450:intron | 50.0% |
| !! | GTGGTGCTTTTTGCTATGGG+TGG | - | chr1.4:51894473-51894492 | MS.gene47450:intron | 50.0% |
| !! | TGCCTGACTGGCTTGTACAT+TGG | - | chr1.4:51894326-51894345 | MS.gene47450:intron | 50.0% |
| ACCTCCAGGTAAGAGAGCAG+CGG | + | chr1.4:51894171-51894190 | None:intergenic | 55.0% | |
| CCCCAATGTACAAGCCAGTC+AGG | + | chr1.4:51894331-51894350 | None:intergenic | 55.0% | |
| ! | TGGCGTGACATTTGAGGTGG+AGG | + | chr1.4:51894061-51894080 | None:intergenic | 55.0% |
| !! | TATGAGCACCGACGCAGACA+TGG | + | chr1.4:51895572-51895591 | None:intergenic | 55.0% |
| GGAGGAAAAGGCCAAGGCCA+AGG | - | chr1.4:51894886-51894905 | MS.gene47450:CDS | 60.0% | |
| GGGATGCAAGTCCTTGGCCT+TGG | + | chr1.4:51894900-51894919 | None:intergenic | 60.0% | |
| TACGCCGCTGCTCTCTTACC+TGG | - | chr1.4:51894164-51894183 | MS.gene47450:intron | 60.0% | |
| TTGGGGTCACCCTGCCAACA+TGG | - | chr1.4:51894345-51894364 | MS.gene47450:intron | 60.0% | |
| GCCGCTGCTCTCTTACCTGG+AGG | - | chr1.4:51894167-51894186 | MS.gene47450:intron | 65.0% | |
| GCGAGTTGCTGCGCCAAGAG+AGG | + | chr1.4:51894039-51894058 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 51893954 | 51895910 | 51893954 | ID=MS.gene47450 |
| chr1.4 | mRNA | 51893954 | 51895910 | 51893954 | ID=MS.gene47450.t1;Parent=MS.gene47450 |
| chr1.4 | exon | 51895676 | 51895910 | 51895676 | ID=MS.gene47450.t1.exon1;Parent=MS.gene47450.t1 |
| chr1.4 | CDS | 51895676 | 51895910 | 51895676 | ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1 |
| chr1.4 | exon | 51895498 | 51895595 | 51895498 | ID=MS.gene47450.t1.exon2;Parent=MS.gene47450.t1 |
| chr1.4 | CDS | 51895498 | 51895595 | 51895498 | ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1 |
| chr1.4 | exon | 51895323 | 51895394 | 51895323 | ID=MS.gene47450.t1.exon3;Parent=MS.gene47450.t1 |
| chr1.4 | CDS | 51895323 | 51895394 | 51895323 | ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1 |
| chr1.4 | exon | 51894853 | 51894977 | 51894853 | ID=MS.gene47450.t1.exon4;Parent=MS.gene47450.t1 |
| chr1.4 | CDS | 51894853 | 51894977 | 51894853 | ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1 |
| chr1.4 | exon | 51894646 | 51894718 | 51894646 | ID=MS.gene47450.t1.exon5;Parent=MS.gene47450.t1 |
| chr1.4 | CDS | 51894646 | 51894718 | 51894646 | ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1 |
| chr1.4 | exon | 51893954 | 51894058 | 51893954 | ID=MS.gene47450.t1.exon6;Parent=MS.gene47450.t1 |
| chr1.4 | CDS | 51893954 | 51894058 | 51893954 | ID=cds.MS.gene47450.t1;Parent=MS.gene47450.t1 |
| Gene Sequence |
| Protein sequence |
