AlfalfaGEDB | MS.gene47696

M. sativa cultivar XinJiangDaYe / MS.gene47696

KEGG: K00830
GO: GO:0003674 GO:0003824
PFAM: PF00266.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47696.t1	XP_003617296.1	98.3	401	7	0	1	401	1	401	1.50E-229	805.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47696.t1	Q56YA5	80.3	401	79	0	1	401	1	401	1.3e-192	673.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47696.t1	G7KCY0	98.3	401	7	0	1	401	1	401	1.1e-229	805.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene47696	-0.828707	7.74E-55	-1.69E-46
MS.gene049217	MS.gene47696	-0.80083	1.20E-48	-1.69E-46
MS.gene049611	MS.gene47696	0.820217	7.71E-53	-1.69E-46
MS.gene050380	MS.gene47696	0.820027	8.52E-53	-1.69E-46
MS.gene050381	MS.gene47696	0.853488	2.31E-61	-1.69E-46
MS.gene050479	MS.gene47696	0.801403	9.15E-49	-1.69E-46
MS.gene050504	MS.gene47696	-0.807815	4.20E-50	-1.69E-46
MS.gene050547	MS.gene47696	0.806666	7.36E-50	-1.69E-46
MS.gene05080	MS.gene47696	-0.81086	9.34E-51	-1.69E-46
MS.gene050868	MS.gene47696	-0.835198	1.93E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene47696.t1	MTR_5g090070	98.254	401	7	0	1	401	1	401	816
MS.gene47696.t1	MTR_3g053890	82.045	401	72	0	1	401	1	401	693
MS.gene47696.t1	MTR_3g053890	80.278	360	71	0	1	360	1	360	618
MS.gene47696.t1	MTR_5g094410	79.602	402	29	6	1	401	1	350	616
MS.gene47696.t1	MTR_5g067370	79.551	401	24	4	1	401	1	343	613

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene47696.t1	AT2G13360	80.299	401	79	1	401	1	401	684
MS.gene47696.t1	AT2G13360	80.299	401	79	1	401	1	401	684
MS.gene47696.t1	AT2G13360	80.299	401	79	1	401	1	401	684

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Find 107 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATACAGTACGATCCC+CGG	0.500419	5.3:+72619610	None:intergenic
AAAGATACAGTACGATCCCC+GGG	0.598348	5.3:+72619611	None:intergenic
AAAGCTCTTTCTCTTCCTAC+TGG	0.444514	5.3:-72618791	MS.gene47696:CDS
AACAACAATAGCAGTCACAC+TGG	0.660740	5.3:+72618282	None:intergenic
AACAATACAAATTGCCTTTA+TGG	0.084246	5.3:+72619448	None:intergenic
AACTGAATGGAAGGAGTGTA+TGG	0.455927	5.3:+72618650	None:intergenic
AAGAGATACAATTTAAGCTT+AGG	0.441477	5.3:-72618217	MS.gene47696:CDS
AATAACATGTTCAGGGATGT+TGG	0.562695	5.3:+72620161	None:intergenic
AATAGCTTACCTCATTTAGA+TGG	0.343778	5.3:+72618143	None:intergenic
AATTATACAATACCAGTTGT+GGG	0.531739	5.3:+72620018	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGCTTACCTCATTTAGA+TGG	+	chr5.3:72619761-72619780	None:intergenic	30.0%
AGATAAAACGCATACCATAA+AGG	-	chr5.3:72618439-72618458	MS.gene47696:intron	30.0%
AGATACAATTTAAGCTTAGG+AGG	-	chr5.3:72619687-72619706	MS.gene47696:intron	30.0%
AGATCTTTCTTTGATTGGAA+TGG	-	chr5.3:72619194-72619213	MS.gene47696:intron	30.0%
ATTATACAATACCAGTTGTG+GGG	+	chr5.3:72617885-72617904	None:intergenic	30.0%
ATTGAAGAATTGTTGCCAAA+AGG	-	chr5.3:72619581-72619600	MS.gene47696:CDS	30.0%
CAACAAGATATCACAATACA+TGG	+	chr5.3:72618696-72618715	None:intergenic	30.0%
CAACCAGGTAATTCATAATT+TGG	-	chr5.3:72619360-72619379	MS.gene47696:intron	30.0%
CAAGTCAAACAAATGTAATG+AGG	+	chr5.3:72618848-72618867	None:intergenic	30.0%
CAATATGTGACAATGATGAA+TGG	+	chr5.3:72619798-72619817	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	72617688	72620235	72617688	ID=MS.gene47696
chr5.3	mRNA	72617688	72620235	72617688	ID=MS.gene47696.t1;Parent=MS.gene47696
chr5.3	exon	72620031	72620235	72620031	ID=MS.gene47696.t1.exon1;Parent=MS.gene47696.t1
chr5.3	CDS	72620031	72620235	72620031	ID=cds.MS.gene47696.t1;Parent=MS.gene47696.t1
chr5.3	exon	72619390	72619674	72619390	ID=MS.gene47696.t1.exon2;Parent=MS.gene47696.t1
chr5.3	CDS	72619390	72619674	72619390	ID=cds.MS.gene47696.t1;Parent=MS.gene47696.t1
chr5.3	exon	72618557	72618923	72618557	ID=MS.gene47696.t1.exon3;Parent=MS.gene47696.t1
chr5.3	CDS	72618557	72618923	72618557	ID=cds.MS.gene47696.t1;Parent=MS.gene47696.t1
chr5.3	exon	72618153	72618363	72618153	ID=MS.gene47696.t1.exon4;Parent=MS.gene47696.t1
chr5.3	CDS	72618153	72618363	72618153	ID=cds.MS.gene47696.t1;Parent=MS.gene47696.t1
chr5.3	exon	72617688	72617825	72617688	ID=MS.gene47696.t1.exon5;Parent=MS.gene47696.t1
chr5.3	CDS	72617688	72617825	72617688	ID=cds.MS.gene47696.t1;Parent=MS.gene47696.t1

Gene Sequence

>MS.gene47696

ATGGATTTTGCTTATGGACCTGGAAGAAACCATCTCTTTGTTCCTGGACCTACCAACATCCCTGAACATGTTATTCGTGCAATGAACAGAAACAATGAAAATCATCGTACTCCAGCAATAACAGCATTGACAAAAACATTACTTGATGATGTTAAGAAAATTTTCAAGACTACTTCTGGAATCCCATTTCTCATCCCCACAACTGGTATTGTATAATTGGACTTGTCAAATTGTTCATTAATCTGTTTATATATTAATTCATTGTTATAGTTAGTTGATGTTAGTCTAATATATTTCCTTAGTCATTAGAATGTTCTATAATTGACTAGATCTTTTACCTTTTTACATTGAGGACTTAAAACACTTCCTACTAAGATTGAAATTGAAAAATCTTGATCACATTATATTAACCCGTCTCGAACAATTTCTATTGACCGACTCAAAGTCAGGGCGCTAGTATGATTGAAAACTTTCGATTTCAATATATTGAAATTTTGTTAATTTTATAAAACAAGTTGCCCTGCGCTTATAATTTAAGTTATGATCCTTCATTTGTTTCAGGTACCGGTGCATGGGAGAGTGCATTGACAAATACTTTGTCTCCCGGGGATCGTACTGTATCTTTTCTAATCGGACAATTCAGCTTGCTTTGGATTGAACAACAAAAACGCCTCAACTTTAAGGTTGATGTTGTAGAAAGTGAATGGGGCCAGGGTGCTGATCTTGATGCTCTAGAATCAAAACTGGCTTCAGATAAAACGCATACCATAAAGGCAATTTGTATTGTTCACAATGAGACAACAACAGGGGTCACAAATGACTTGACTAAAGTGAGAAAACTCCTTGGTGAGCATCCCTTCTAACTATGTTTGTTATTCAATTATTTATTATGTTAACATGTTTTTCATCATCATAACTTTGTGTATGTTTATGTCTTGAAAGATATTTGAATTTGTTGGAATAGTCTTATATGTAAATTTATAAATCTTGATACTTCCAAATTTTCCATGTATTGTGATATCTTGTTGATCAAGGTATCACAAATTTATGATACCTTATTGTCATGTGCGTTTGTGATACCTAAATTTGTGATACCTTGTTGATTGTGTGCACATGAAGTGCCTACATATATAGCATCTTTAGTCATATATTCCGGGCCTCATTACATTTGTTTGACTTGACAATAATTTCATGATTCAACTCAAAATAAGTCTAAAAAATGTATGACATACATGTGCTTTCTTAGGACAAATTTTTTCTTTTAATTTATCTTAAACATGTGATTATCCTAACGTTATGTTTTTTTACTTAGACAAGTACCAGCACCCAGCACTCATTATTGTTGATGCGGTGTCTTCAATCGGAGCTCTTGATTTCCGCATGGATGAATGGGGTGTAGACGTGGTAGTGACCAGTTCTCAGAAAGCTCTTTCTCTTCCTACTGGAATGGGAATTGTATGTGCAGGACCTAAAGCCATTGAAGCTTCGAAATCTGCAAGATCACTTAGATCTTTCTTTGATTGGAATGGTTACTTGAAATGCTACAACTTGGGAACTTATTGGCCATACACTCCTTCCATTCAGTTGCTCTATGGTCTAAGGGCAGCCCTTGACTTGGTTTTTGAGGAAGGATTTGAAAATGTGATTTTAAGGCACAAGCGTTTAGCCAAAGCAACCAGGTAATTCATAATTTGGTTTATTTGAGTTAGATATTTGTCCATAATTTAGATGTCTAGTTCTGAGCAAGAGAGATATGTTGAAATCGCACATAGACTAGAGATTTGGTCAATGTAATTTTCATGCGACTCGAAAAATTGTTATTTCTATTACTTGAATTTATTGTGTTTCCTATGTCTTATATGCTATATGTAGGCTTGCAGTAGAGGCGTGGGGATTGAAGAATTGTTGCCAAAAGGAGGAGTGGTATAGTGCCAGTGTGACTGCTATTGTTGTTCCTCCCAACATTGACAGTGGTGAAATAGTTAGAAGGGCATGGAAGAGATACAATTTAAGCTTAGGAGGTGGATTGAACAAAGTTGCTGGGAAAATTTTCAGAATAGGACATGTTGGCCATCTAAATGAGGTAAGCTATTTTTTTCTCATACATCCATTCATCATTGTCACATATTGCACGAATATTAGTCAAAGAAAACCTTTTTTTATTTTTTGGCTTTTCTTTAGATAGATAGAGACATTAATTTATTCAATCATCTAATAGCATATAGGCTAGCTTTTATTGAATCATAATAGCATAAACTAACTATTGTTGATGTTGTTATCTATACTATTACATGAATTTAACAAATCAAAGTACAAATAAAAAAATCATTAGACAATGTTAAAAATGTATAATATAATAAATTGTCGTTTATAAAAAATTATAATCATTTCATATGTTATATATTTTTAGCTGCAACTTTTGGGATGTCTTGCTGGTGTGGAGATGACACTCAAAGATGTGGGTTACCCGGTCAAGCTTGGGAGTGGAGTGGCTGCTGCTAGTGCTTATTTACTGAACAATGTTCCTCTAATCCCTTCAAGAATTTGA

Protein sequence

>MS.gene47696.t1

MDFAYGPGRNHLFVPGPTNIPEHVIRAMNRNNENHRTPAITALTKTLLDDVKKIFKTTSGIPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIEQQKRLNFKVDVVESEWGQGADLDALESKLASDKTHTIKAICIVHNETTTGVTNDLTKVRKLLDKYQHPALIIVDAVSSIGALDFRMDEWGVDVVVTSSQKALSLPTGMGIVCAGPKAIEASKSARSLRSFFDWNGYLKCYNLGTYWPYTPSIQLLYGLRAALDLVFEEGFENVILRHKRLAKATRLAVEAWGLKNCCQKEEWYSASVTAIVVPPNIDSGEIVRRAWKRYNLSLGGGLNKVAGKIFRIGHVGHLNELQLLGCLAGVEMTLKDVGYPVKLGSGVAAASAYLLNNVPLIPSRI