Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47696.t1 | XP_003617296.1 | 98.3 | 401 | 7 | 0 | 1 | 401 | 1 | 401 | 1.50E-229 | 805.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47696.t1 | Q56YA5 | 80.3 | 401 | 79 | 0 | 1 | 401 | 1 | 401 | 1.3e-192 | 673.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47696.t1 | G7KCY0 | 98.3 | 401 | 7 | 0 | 1 | 401 | 1 | 401 | 1.1e-229 | 805.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene47696 | -0.828707 | 7.74E-55 | -1.69E-46 |
| MS.gene049217 | MS.gene47696 | -0.80083 | 1.20E-48 | -1.69E-46 |
| MS.gene049611 | MS.gene47696 | 0.820217 | 7.71E-53 | -1.69E-46 |
| MS.gene050380 | MS.gene47696 | 0.820027 | 8.52E-53 | -1.69E-46 |
| MS.gene050381 | MS.gene47696 | 0.853488 | 2.31E-61 | -1.69E-46 |
| MS.gene050479 | MS.gene47696 | 0.801403 | 9.15E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene47696 | -0.807815 | 4.20E-50 | -1.69E-46 |
| MS.gene050547 | MS.gene47696 | 0.806666 | 7.36E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene47696 | -0.81086 | 9.34E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene47696 | -0.835198 | 1.93E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene47696 | -0.83371 | 4.56E-56 | -1.69E-46 |
| MS.gene050937 | MS.gene47696 | 0.805107 | 1.57E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene47696 | 0.815026 | 1.14E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene47696 | -0.812024 | 5.22E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene47696 | -0.813905 | 2.02E-51 | -1.69E-46 |
| MS.gene051874 | MS.gene47696 | -0.808823 | 2.56E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene47696 | 0.854208 | 1.43E-61 | -1.69E-46 |
| MS.gene052164 | MS.gene47696 | -0.834055 | 3.74E-56 | -1.69E-46 |
| MS.gene05234 | MS.gene47696 | 0.836799 | 7.57E-57 | -1.69E-46 |
| MS.gene053203 | MS.gene47696 | -0.833905 | 4.08E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene47696 | 0.836865 | 7.29E-57 | -1.69E-46 |
| MS.gene053479 | MS.gene47696 | -0.801902 | 7.23E-49 | -1.69E-46 |
| MS.gene053549 | MS.gene47696 | 0.80219 | 6.31E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene47696 | -0.811763 | 5.95E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene47696 | -0.806369 | 8.51E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene47696 | 0.825758 | 3.94E-54 | -1.69E-46 |
| MS.gene054708 | MS.gene47696 | 0.811579 | 6.52E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene47696 | -0.801473 | 8.86E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene47696 | -0.814146 | 1.79E-51 | -1.69E-46 |
| MS.gene054959 | MS.gene47696 | 0.802523 | 5.39E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene47696 | 0.802009 | 6.87E-49 | -1.69E-46 |
| MS.gene055202 | MS.gene47696 | 0.824751 | 6.81E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene47696 | -0.812519 | 4.07E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene47696 | -0.824852 | 6.45E-54 | -1.69E-46 |
| MS.gene05589 | MS.gene47696 | -0.812804 | 3.53E-51 | -1.69E-46 |
| MS.gene056310 | MS.gene47696 | 0.81301 | 3.18E-51 | -1.69E-46 |
| MS.gene056313 | MS.gene47696 | 0.810533 | 1.10E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene47696 | -0.802509 | 5.42E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene47696 | 0.854492 | 1.19E-61 | -1.69E-46 |
| MS.gene057048 | MS.gene47696 | -0.804123 | 2.51E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene47696 | 0.809693 | 1.67E-50 | -1.69E-46 |
| MS.gene058157 | MS.gene47696 | -0.820934 | 5.27E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene47696 | 0.806853 | 6.72E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene47696 | 0.81006 | 1.39E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene47696 | -0.82393 | 1.06E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene47696 | -0.814479 | 1.51E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene47696 | -0.802633 | 5.11E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene47696 | -0.807232 | 5.59E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene47696 | -0.821568 | 3.77E-53 | -1.69E-46 |
| MS.gene059223 | MS.gene47696 | 0.847369 | 1.21E-59 | -1.69E-46 |
| MS.gene059718 | MS.gene47696 | -0.813889 | 2.04E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene47696 | -0.816607 | 5.07E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene47696 | 0.805937 | 1.05E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene47696 | -0.81907 | 1.41E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene47696 | -0.801272 | 9.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47696.t1 | MTR_5g090070 | 98.254 | 401 | 7 | 0 | 1 | 401 | 1 | 401 | 0.0 | 816 |
| MS.gene47696.t1 | MTR_3g053890 | 82.045 | 401 | 72 | 0 | 1 | 401 | 1 | 401 | 0.0 | 693 |
| MS.gene47696.t1 | MTR_3g053890 | 80.278 | 360 | 71 | 0 | 1 | 360 | 1 | 360 | 0.0 | 618 |
| MS.gene47696.t1 | MTR_5g094410 | 79.602 | 402 | 29 | 6 | 1 | 401 | 1 | 350 | 0.0 | 616 |
| MS.gene47696.t1 | MTR_5g067370 | 79.551 | 401 | 24 | 4 | 1 | 401 | 1 | 343 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47696.t1 | AT2G13360 | 80.299 | 401 | 79 | 0 | 1 | 401 | 1 | 401 | 0.0 | 684 |
| MS.gene47696.t1 | AT2G13360 | 80.299 | 401 | 79 | 0 | 1 | 401 | 1 | 401 | 0.0 | 684 |
| MS.gene47696.t1 | AT2G13360 | 80.299 | 401 | 79 | 0 | 1 | 401 | 1 | 401 | 0.0 | 684 |
Find 107 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATACAAATTGCCTTTA+TGG | 0.084246 | 5.3:+72619448 | None:intergenic |
| GCTACAACTTGGGAACTTAT+TGG | 0.227479 | 5.3:-72618673 | MS.gene47696:CDS |
| TTCAGTTGCTCTATGGTCTA+AGG | 0.263982 | 5.3:-72618634 | MS.gene47696:CDS |
| CACTTAGATCTTTCTTTGAT+TGG | 0.276960 | 5.3:-72618712 | MS.gene47696:CDS |
| CACTATACCACTCCTCCTTT+TGG | 0.318503 | 5.3:+72618305 | None:intergenic |
| CAAATTCTTGAAGGGATTAG+AGG | 0.332922 | 5.3:+72617689 | None:intergenic |
| CCTTCCATTCAGTTGCTCTA+TGG | 0.334757 | 5.3:-72618641 | MS.gene47696:CDS |
| TTCGAAGCTTCAATGGCTTT+AGG | 0.337016 | 5.3:+72618746 | None:intergenic |
| AATAGCTTACCTCATTTAGA+TGG | 0.343778 | 5.3:+72618143 | None:intergenic |
| TTTGTCAATGCTGTTATTGC+TGG | 0.351983 | 5.3:+72620102 | None:intergenic |
| TCGGACAATTCAGCTTGCTT+TGG | 0.363589 | 5.3:-72619583 | MS.gene47696:CDS |
| AGAAACCATCTCTTTGTTCC+TGG | 0.371920 | 5.3:-72620189 | MS.gene47696:CDS |
| TATGAATTACCTGGTTGCTT+TGG | 0.381163 | 5.3:+72618547 | None:intergenic |
| CCAGTTGTGGGGATGAGAAA+TGG | 0.387252 | 5.3:+72620030 | None:intergenic |
| AGAAAGAGCTTTCTGAGAAC+TGG | 0.405377 | 5.3:+72618802 | None:intergenic |
| TGATTTCCGCATGGATGAAT+GGG | 0.408622 | 5.3:-72618843 | MS.gene47696:CDS |
| ATTGCACGAATAACATGTTC+AGG | 0.410447 | 5.3:+72620153 | None:intergenic |
| CTTTCTCTTCCTACTGGAAT+GGG | 0.414514 | 5.3:-72618785 | MS.gene47696:CDS |
| TTGATTTCCGCATGGATGAA+TGG | 0.416031 | 5.3:-72618844 | MS.gene47696:CDS |
| ACAAAGAGATGGTTTCTTCC+AGG | 0.418053 | 5.3:+72620195 | None:intergenic |
| ACAGTGGTGAAATAGTTAGA+AGG | 0.436540 | 5.3:-72618246 | MS.gene47696:CDS |
| ACTCCACTCCCAAGCTTGAC+CGG | 0.438490 | 5.3:+72617746 | None:intergenic |
| AAGAGATACAATTTAAGCTT+AGG | 0.441477 | 5.3:-72618217 | MS.gene47696:CDS |
| AAAGCTCTTTCTCTTCCTAC+TGG | 0.444514 | 5.3:-72618791 | MS.gene47696:CDS |
| AGATAAAACGCATACCATAA+AGG | 0.445325 | 5.3:-72619462 | MS.gene47696:CDS |
| GGTGGATTGAACAAAGTTGC+TGG | 0.446782 | 5.3:-72618193 | MS.gene47696:CDS |
| CATGTGACTCAAATTCTTGA+AGG | 0.450632 | 5.3:+72617680 | None:intergenic |
| TTGTTTCAGGTACCGGTGCA+TGG | 0.452534 | 5.3:-72619661 | MS.gene47696:intron |
| TTTGGGATGTCTTGCTGGTG+TGG | 0.453468 | 5.3:-72617795 | MS.gene47696:CDS |
| TGCAGATTTCGAAGCTTCAA+TGG | 0.453912 | 5.3:+72618739 | None:intergenic |
| AACTGAATGGAAGGAGTGTA+TGG | 0.455927 | 5.3:+72618650 | None:intergenic |
| TGATGCTCTAGAATCAAAAC+TGG | 0.458787 | 5.3:-72619489 | MS.gene47696:CDS |
| GTGGGTTACCCGGTCAAGCT+TGG | 0.461906 | 5.3:-72617755 | MS.gene47696:CDS |
| CCATTTCTCATCCCCACAAC+TGG | 0.462759 | 5.3:-72620030 | MS.gene47696:intron |
| GTTGATGCGGTGTCTTCAAT+CGG | 0.463044 | 5.3:-72618872 | MS.gene47696:CDS |
| TGGGTTACCCGGTCAAGCTT+GGG | 0.469568 | 5.3:-72617754 | MS.gene47696:CDS |
| AGATCTTTCTTTGATTGGAA+TGG | 0.470224 | 5.3:-72618707 | MS.gene47696:CDS |
| TCTTTCTCTTCCTACTGGAA+TGG | 0.479245 | 5.3:-72618786 | MS.gene47696:CDS |
| CAGTTGTGGGGATGAGAAAT+GGG | 0.482700 | 5.3:+72620031 | None:intergenic |
| GTTCACAATGAGACAACAAC+AGG | 0.484768 | 5.3:-72619428 | MS.gene47696:CDS |
| GTGAAATAGTTAGAAGGGCA+TGG | 0.490345 | 5.3:-72618240 | MS.gene47696:CDS |
| ATTTCACCACTGTCAATGTT+GGG | 0.491440 | 5.3:+72618256 | None:intergenic |
| TACCCGGTCAAGCTTGGGAG+TGG | 0.492373 | 5.3:-72617749 | MS.gene47696:CDS |
| GCATCAACAATAATGAGTGC+TGG | 0.492711 | 5.3:+72618887 | None:intergenic |
| TACTTGAAATGCTACAACTT+GGG | 0.493378 | 5.3:-72618683 | MS.gene47696:CDS |
| TTGACAAATACTTTGTCTCC+CGG | 0.495186 | 5.3:-72619629 | MS.gene47696:CDS |
| TCTAAGGGCAGCCCTTGACT+TGG | 0.497508 | 5.3:-72618618 | MS.gene47696:CDS |
| AAAAGATACAGTACGATCCC+CGG | 0.500419 | 5.3:+72619610 | None:intergenic |
| TATTTCACCACTGTCAATGT+TGG | 0.500600 | 5.3:+72618255 | None:intergenic |
| TTGATGTTGTAGAAAGTGAA+TGG | 0.508510 | 5.3:-72619529 | MS.gene47696:CDS |
| ATTGAAGAATTGTTGCCAAA+AGG | 0.516010 | 5.3:-72618320 | MS.gene47696:CDS |
| TGACAAATACTTTGTCTCCC+GGG | 0.516801 | 5.3:-72619628 | MS.gene47696:CDS |
| TACAATTTAAGCTTAGGAGG+TGG | 0.519619 | 5.3:-72618211 | MS.gene47696:CDS |
| CAATTATACAATACCAGTTG+TGG | 0.523225 | 5.3:+72620017 | None:intergenic |
| TCAGGGATGTTGGTAGGTCC+AGG | 0.525986 | 5.3:+72620171 | None:intergenic |
| TTACTTGAAATGCTACAACT+TGG | 0.530532 | 5.3:-72618684 | MS.gene47696:CDS |
| AATTATACAATACCAGTTGT+GGG | 0.531739 | 5.3:+72620018 | None:intergenic |
| TGTTTCAGGTACCGGTGCAT+GGG | 0.532953 | 5.3:-72619660 | MS.gene47696:intron |
| ACTCAAAGATGTGGGTTACC+CGG | 0.533616 | 5.3:-72617765 | MS.gene47696:CDS |
| ATGTGACTCAAATTCTTGAA+GGG | 0.533659 | 5.3:+72617681 | None:intergenic |
| TGATGTTGTAGAAAGTGAAT+GGG | 0.540744 | 5.3:-72619528 | MS.gene47696:CDS |
| TCAGTTGCTCTATGGTCTAA+GGG | 0.543879 | 5.3:-72618633 | MS.gene47696:CDS |
| CTCCACTCCCAAGCTTGACC+GGG | 0.546675 | 5.3:+72617747 | None:intergenic |
| TAGACCATAGAGCAACTGAA+TGG | 0.550731 | 5.3:+72618637 | None:intergenic |
| TGTAGAAAGTGAATGGGGCC+AGG | 0.551786 | 5.3:-72619522 | MS.gene47696:CDS |
| AGATACAATTTAAGCTTAGG+AGG | 0.552221 | 5.3:-72618214 | MS.gene47696:CDS |
| TTGCACGAATAACATGTTCA+GGG | 0.553105 | 5.3:+72620154 | None:intergenic |
| TATATGTAGGCTTGCAGTAG+AGG | 0.553754 | 5.3:-72618350 | MS.gene47696:intron |
| AATAACATGTTCAGGGATGT+TGG | 0.562695 | 5.3:+72620161 | None:intergenic |
| CCATAGAGCAACTGAATGGA+AGG | 0.563284 | 5.3:+72618641 | None:intergenic |
| CAATAATGAGTGCTGGGTGC+TGG | 0.567172 | 5.3:+72618894 | None:intergenic |
| GAAGAATTGTTGCCAAAAGG+AGG | 0.568226 | 5.3:-72618317 | MS.gene47696:CDS |
| TAGGCTTGCAGTAGAGGCGT+GGG | 0.570571 | 5.3:-72618344 | MS.gene47696:CDS |
| ACTAAAGTGAGAAAACTCCT+TGG | 0.581027 | 5.3:-72619389 | MS.gene47696:intron |
| CATCAACAATAATGAGTGCT+GGG | 0.584013 | 5.3:+72618888 | None:intergenic |
| CAGTGGTGAAATAGTTAGAA+GGG | 0.585034 | 5.3:-72618245 | MS.gene47696:CDS |
| GAGCATCAAGATCAGCACCC+TGG | 0.596981 | 5.3:+72619504 | None:intergenic |
| AAAGATACAGTACGATCCCC+GGG | 0.598348 | 5.3:+72619611 | None:intergenic |
| GTGGATTGAACAAAGTTGCT+GGG | 0.598591 | 5.3:-72618192 | MS.gene47696:CDS |
| AGCACTCATTATTGTTGATG+CGG | 0.602112 | 5.3:-72618885 | MS.gene47696:CDS |
| CGGAGCTCTTGATTTCCGCA+TGG | 0.603311 | 5.3:-72618852 | MS.gene47696:CDS |
| AGCGTTTAGCCAAAGCAACC+AGG | 0.604651 | 5.3:-72618556 | MS.gene47696:intron |
| ACATGTTCAGGGATGTTGGT+AGG | 0.606345 | 5.3:+72620165 | None:intergenic |
| GACAAATACTTTGTCTCCCG+GGG | 0.610271 | 5.3:-72619627 | MS.gene47696:CDS |
| CAATGCACTCTCCCATGCAC+CGG | 0.610924 | 5.3:+72619649 | None:intergenic |
| GGTCAAGCTTGGGAGTGGAG+TGG | 0.613102 | 5.3:-72617744 | MS.gene47696:CDS |
| ACATGTTGGCCATCTAAATG+AGG | 0.619704 | 5.3:-72618152 | MS.gene47696:intron |
| CAACATCAACCTTAAAGTTG+AGG | 0.623731 | 5.3:+72619543 | None:intergenic |
| CATACAATTCCCATTCCAGT+AGG | 0.632224 | 5.3:+72618776 | None:intergenic |
| TAGGTCCAGGAACAAAGAGA+TGG | 0.632427 | 5.3:+72620184 | None:intergenic |
| TCACCACTGTCAATGTTGGG+AGG | 0.637245 | 5.3:+72618259 | None:intergenic |
| ATTGTTGCCAAAAGGAGGAG+TGG | 0.641815 | 5.3:-72618312 | MS.gene47696:CDS |
| GGAGATGACACTCAAAGATG+TGG | 0.643188 | 5.3:-72617774 | MS.gene47696:CDS |
| GTAGGCTTGCAGTAGAGGCG+TGG | 0.645225 | 5.3:-72618345 | MS.gene47696:intron |
| GGAATGGGAATTGTATGTGC+AGG | 0.648178 | 5.3:-72618770 | MS.gene47696:CDS |
| AACAACAATAGCAGTCACAC+TGG | 0.660740 | 5.3:+72618282 | None:intergenic |
| GTAGAAAGTGAATGGGGCCA+GGG | 0.661044 | 5.3:-72619521 | MS.gene47696:CDS |
| GGATGAATGGGGTGTAGACG+TGG | 0.667971 | 5.3:-72618831 | MS.gene47696:CDS |
| ATTATACAATACCAGTTGTG+GGG | 0.675615 | 5.3:+72620019 | None:intergenic |
| TTCACAATGAGACAACAACA+GGG | 0.686862 | 5.3:-72619427 | MS.gene47696:CDS |
| GATTTCCGCATGGATGAATG+GGG | 0.690927 | 5.3:-72618842 | MS.gene47696:CDS |
| AGGCTTGCAGTAGAGGCGTG+GGG | 0.694372 | 5.3:-72618343 | MS.gene47696:CDS |
| GTTCCTCCCAACATTGACAG+TGG | 0.707114 | 5.3:-72618262 | MS.gene47696:CDS |
| GAGATGACACTCAAAGATGT+GGG | 0.710270 | 5.3:-72617773 | MS.gene47696:CDS |
| GATGTTGTAGAAAGTGAATG+GGG | 0.730361 | 5.3:-72619527 | MS.gene47696:CDS |
| CTACACCCCATTCATCCATG+CGG | 0.753299 | 5.3:+72618837 | None:intergenic |
| TCACAATGAGACAACAACAG+GGG | 0.780788 | 5.3:-72619426 | MS.gene47696:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGCCAAAAAATAAAAAA+AGG | + | chr5.3:72619843-72619862 | None:intergenic | 15.0% |
| !!! | GAAAACCTTTTTTTATTTTT+TGG | - | chr5.3:72619835-72619854 | MS.gene47696:intron | 15.0% |
| !! | AAGTAAAAAAACATAACGTT+AGG | + | chr5.3:72618978-72618997 | None:intergenic | 20.0% |
| !! | AATAACAAACATAGTTAGAA+GGG | + | chr5.3:72618545-72618564 | None:intergenic | 20.0% |
| !! | TGAAAGATATTTGAATTTGT+TGG | - | chr5.3:72618624-72618643 | MS.gene47696:CDS | 20.0% |
| !!! | GATTTGAAAATGTGATTTTA+AGG | - | chr5.3:72619318-72619337 | MS.gene47696:intron | 20.0% |
| !!! | TTTTCAATTTCAATCTTAGT+AGG | + | chr5.3:72618057-72618076 | None:intergenic | 20.0% |
| ! | AAACCAAATTATGAATTACC+TGG | + | chr5.3:72619366-72619385 | None:intergenic | 25.0% |
| ! | AACAATACAAATTGCCTTTA+TGG | + | chr5.3:72618456-72618475 | None:intergenic | 25.0% |
| ! | AAGAGATACAATTTAAGCTT+AGG | - | chr5.3:72619684-72619703 | MS.gene47696:intron | 25.0% |
| ! | AATTATACAATACCAGTTGT+GGG | + | chr5.3:72617886-72617905 | None:intergenic | 25.0% |
| ! | ACATATAGCATATAAGACAT+AGG | + | chr5.3:72619538-72619557 | None:intergenic | 25.0% |
| ! | ACTAAAGATGCTATATATGT+AGG | + | chr5.3:72618812-72618831 | None:intergenic | 25.0% |
| ! | AGAACTAGACATCTAAATTA+TGG | + | chr5.3:72619408-72619427 | None:intergenic | 25.0% |
| ! | ATAACTTAAATTATAAGCGC+AGG | + | chr5.3:72618210-72618229 | None:intergenic | 25.0% |
| ! | ATAGAACATTCTAATGACTA+AGG | + | chr5.3:72617987-72618006 | None:intergenic | 25.0% |
| ! | ATCACAATACATGGAAAATT+TGG | + | chr5.3:72618687-72618706 | None:intergenic | 25.0% |
| ! | ATGTCTTATATGCTATATGT+AGG | - | chr5.3:72619538-72619557 | MS.gene47696:CDS | 25.0% |
| ! | GAATAACAAACATAGTTAGA+AGG | + | chr5.3:72618546-72618565 | None:intergenic | 25.0% |
| ! | TAACTTAAATTATAAGCGCA+GGG | + | chr5.3:72618209-72618228 | None:intergenic | 25.0% |
| ! | TCAATCATCTAATAGCATAT+AGG | - | chr5.3:72619891-72619910 | MS.gene47696:intron | 25.0% |
| ! | TTTAAGTCCTCAATGTAAAA+AGG | + | chr5.3:72618028-72618047 | None:intergenic | 25.0% |
| !! | TCTTTTACCTTTTTACATTG+AGG | - | chr5.3:72618018-72618037 | MS.gene47696:intron | 25.0% |
| !!! | AAAATTTTCAAGACTACTTC+TGG | - | chr5.3:72617844-72617863 | MS.gene47696:intron | 25.0% |
| !!! | ATATTTTTAGCTGCAACTTT+TGG | - | chr5.3:72620088-72620107 | MS.gene47696:CDS | 25.0% |
| !!! | TATTTTTAGCTGCAACTTTT+GGG | - | chr5.3:72620089-72620108 | MS.gene47696:CDS | 25.0% |
| AATAGCTTACCTCATTTAGA+TGG | + | chr5.3:72619761-72619780 | None:intergenic | 30.0% | |
| AGATAAAACGCATACCATAA+AGG | - | chr5.3:72618439-72618458 | MS.gene47696:intron | 30.0% | |
| AGATACAATTTAAGCTTAGG+AGG | - | chr5.3:72619687-72619706 | MS.gene47696:intron | 30.0% | |
| AGATCTTTCTTTGATTGGAA+TGG | - | chr5.3:72619194-72619213 | MS.gene47696:intron | 30.0% | |
| ATTATACAATACCAGTTGTG+GGG | + | chr5.3:72617885-72617904 | None:intergenic | 30.0% | |
| ATTGAAGAATTGTTGCCAAA+AGG | - | chr5.3:72619581-72619600 | MS.gene47696:CDS | 30.0% | |
| CAACAAGATATCACAATACA+TGG | + | chr5.3:72618696-72618715 | None:intergenic | 30.0% | |
| CAACCAGGTAATTCATAATT+TGG | - | chr5.3:72619360-72619379 | MS.gene47696:intron | 30.0% | |
| CAAGTCAAACAAATGTAATG+AGG | + | chr5.3:72618848-72618867 | None:intergenic | 30.0% | |
| CAATATGTGACAATGATGAA+TGG | + | chr5.3:72619798-72619817 | None:intergenic | 30.0% | |
| CAATTATACAATACCAGTTG+TGG | + | chr5.3:72617887-72617906 | None:intergenic | 30.0% | |
| CACAACTGGTATTGTATAAT+TGG | - | chr5.3:72617885-72617904 | MS.gene47696:intron | 30.0% | |
| CACTTAGATCTTTCTTTGAT+TGG | - | chr5.3:72619189-72619208 | MS.gene47696:intron | 30.0% | |
| CATCTTTAGTCATATATTCC+GGG | - | chr5.3:72618822-72618841 | MS.gene47696:CDS | 30.0% | |
| GCATCTTTAGTCATATATTC+CGG | - | chr5.3:72618821-72618840 | MS.gene47696:CDS | 30.0% | |
| TACTTGAAATGCTACAACTT+GGG | - | chr5.3:72619218-72619237 | MS.gene47696:intron | 30.0% | |
| TATGATCCTTCATTTGTTTC+AGG | - | chr5.3:72618227-72618246 | MS.gene47696:CDS | 30.0% | |
| TCAATAGAAATTGTTCGAGA+CGG | + | chr5.3:72618102-72618121 | None:intergenic | 30.0% | |
| TGATGTTGTAGAAAGTGAAT+GGG | - | chr5.3:72618373-72618392 | MS.gene47696:intron | 30.0% | |
| TTACTTGAAATGCTACAACT+TGG | - | chr5.3:72619217-72619236 | MS.gene47696:intron | 30.0% | |
| TTGATGTTGTAGAAAGTGAA+TGG | - | chr5.3:72618372-72618391 | MS.gene47696:intron | 30.0% | |
| TTGTGATATCTTGTTGATCA+AGG | - | chr5.3:72618700-72618719 | MS.gene47696:CDS | 30.0% | |
| ! | ATTTTCAGAATAGGACATGT+TGG | - | chr5.3:72619735-72619754 | MS.gene47696:intron | 30.0% |
| ! | CAACAAGGTATCACAAATTT+AGG | + | chr5.3:72618770-72618789 | None:intergenic | 30.0% |
| ! | CGTACTGTATCTTTTCTAAT+CGG | - | chr5.3:72618299-72618318 | MS.gene47696:CDS | 30.0% |
| AATAACATGTTCAGGGATGT+TGG | + | chr5.3:72617743-72617762 | None:intergenic | 35.0% | |
| ACAAAAACGCCTCAACTTTA+AGG | - | chr5.3:72618349-72618368 | MS.gene47696:intron | 35.0% | |
| ACAGTGGTGAAATAGTTAGA+AGG | - | chr5.3:72619655-72619674 | MS.gene47696:CDS | 35.0% | |
| ACTAAAGTGAGAAAACTCCT+TGG | - | chr5.3:72618512-72618531 | MS.gene47696:intron | 35.0% | |
| AGCACTCATTATTGTTGATG+CGG | - | chr5.3:72619016-72619035 | MS.gene47696:intron | 35.0% | |
| ATTGCACGAATAACATGTTC+AGG | + | chr5.3:72617751-72617770 | None:intergenic | 35.0% | |
| ATTTCACCACTGTCAATGTT+GGG | + | chr5.3:72619648-72619667 | None:intergenic | 35.0% | |
| CAAATTCTTGAAGGGATTAG+AGG | + | chr5.3:72620215-72620234 | None:intergenic | 35.0% | |
| CAACATCAACCTTAAAGTTG+AGG | + | chr5.3:72618361-72618380 | None:intergenic | 35.0% | |
| CAATAGAAATTGTTCGAGAC+GGG | + | chr5.3:72618101-72618120 | None:intergenic | 35.0% | |
| CAGTGGTGAAATAGTTAGAA+GGG | - | chr5.3:72619656-72619675 | MS.gene47696:intron | 35.0% | |
| CATCAACAATAATGAGTGCT+GGG | + | chr5.3:72619016-72619035 | None:intergenic | 35.0% | |
| GATGTTGTAGAAAGTGAATG+GGG | - | chr5.3:72618374-72618393 | MS.gene47696:intron | 35.0% | |
| TACAATTTAAGCTTAGGAGG+TGG | - | chr5.3:72619690-72619709 | MS.gene47696:intron | 35.0% | |
| TATGAATTACCTGGTTGCTT+TGG | + | chr5.3:72619357-72619376 | None:intergenic | 35.0% | |
| TATTTCACCACTGTCAATGT+TGG | + | chr5.3:72619649-72619668 | None:intergenic | 35.0% | |
| TGACATACATGTGCTTTCTT+AGG | - | chr5.3:72618912-72618931 | MS.gene47696:intron | 35.0% | |
| TTCACAATGAGACAACAACA+GGG | - | chr5.3:72618474-72618493 | MS.gene47696:intron | 35.0% | |
| TTCCTCAAAAACCAAGTCAA+GGG | + | chr5.3:72619297-72619316 | None:intergenic | 35.0% | |
| TTGACAAATACTTTGTCTCC+CGG | - | chr5.3:72618272-72618291 | MS.gene47696:CDS | 35.0% | |
| TTGCACGAATAACATGTTCA+GGG | + | chr5.3:72617750-72617769 | None:intergenic | 35.0% | |
| TTTGTCAATGCTGTTATTGC+TGG | + | chr5.3:72617802-72617821 | None:intergenic | 35.0% | |
| ! | GCTGGGAAAATTTTCAGAAT+AGG | - | chr5.3:72619726-72619745 | MS.gene47696:intron | 35.0% |
| !! | TGATGCTCTAGAATCAAAAC+TGG | - | chr5.3:72618412-72618431 | MS.gene47696:intron | 35.0% |
| AAAAGATACAGTACGATCCC+CGG | + | chr5.3:72618294-72618313 | None:intergenic | 40.0% | |
| AAAGCTCTTTCTCTTCCTAC+TGG | - | chr5.3:72619110-72619129 | MS.gene47696:intron | 40.0% | |
| AACAACAATAGCAGTCACAC+TGG | + | chr5.3:72619622-72619641 | None:intergenic | 40.0% | |
| ACAAAGAGATGGTTTCTTCC+AGG | + | chr5.3:72617709-72617728 | None:intergenic | 40.0% | |
| ACATGTTGGCCATCTAAATG+AGG | - | chr5.3:72619749-72619768 | MS.gene47696:intron | 40.0% | |
| AGAAACCATCTCTTTGTTCC+TGG | - | chr5.3:72617712-72617731 | MS.gene47696:CDS | 40.0% | |
| CAAACAAATGTAATGAGGCC+CGG | + | chr5.3:72618843-72618862 | None:intergenic | 40.0% | |
| CACAAACGCACATGACAATA+AGG | + | chr5.3:72618744-72618763 | None:intergenic | 40.0% | |
| CATACAATTCCCATTCCAGT+AGG | + | chr5.3:72619128-72619147 | None:intergenic | 40.0% | |
| CTTCCTCAAAAACCAAGTCA+AGG | + | chr5.3:72619298-72619317 | None:intergenic | 40.0% | |
| CTTTCTCTTCCTACTGGAAT+GGG | - | chr5.3:72619116-72619135 | MS.gene47696:intron | 40.0% | |
| GAAGAATTGTTGCCAAAAGG+AGG | - | chr5.3:72619584-72619603 | MS.gene47696:CDS | 40.0% | |
| GAGATGACACTCAAAGATGT+GGG | - | chr5.3:72620128-72620147 | MS.gene47696:CDS | 40.0% | |
| GCATCAACAATAATGAGTGC+TGG | + | chr5.3:72619017-72619036 | None:intergenic | 40.0% | |
| GCTACAACTTGGGAACTTAT+TGG | - | chr5.3:72619228-72619247 | MS.gene47696:intron | 40.0% | |
| GTGAAATAGTTAGAAGGGCA+TGG | - | chr5.3:72619661-72619680 | MS.gene47696:intron | 40.0% | |
| GTTCACAATGAGACAACAAC+AGG | - | chr5.3:72618473-72618492 | MS.gene47696:intron | 40.0% | |
| TAGACCATAGAGCAACTGAA+TGG | + | chr5.3:72619267-72619286 | None:intergenic | 40.0% | |
| TATATGTAGGCTTGCAGTAG+AGG | - | chr5.3:72619551-72619570 | MS.gene47696:CDS | 40.0% | |
| TCACAATGAGACAACAACAG+GGG | - | chr5.3:72618475-72618494 | MS.gene47696:intron | 40.0% | |
| TCAGTTGCTCTATGGTCTAA+GGG | - | chr5.3:72619268-72619287 | MS.gene47696:intron | 40.0% | |
| TCATGTGCACACAATCAACA+AGG | + | chr5.3:72618785-72618804 | None:intergenic | 40.0% | |
| TCGCACATAGACTAGAGATT+TGG | - | chr5.3:72619450-72619469 | MS.gene47696:CDS | 40.0% | |
| TCTTTCTCTTCCTACTGGAA+TGG | - | chr5.3:72619115-72619134 | MS.gene47696:intron | 40.0% | |
| TGACAAATACTTTGTCTCCC+GGG | - | chr5.3:72618273-72618292 | MS.gene47696:CDS | 40.0% | |
| TGATTTCCGCATGGATGAAT+GGG | - | chr5.3:72619058-72619077 | MS.gene47696:intron | 40.0% | |
| TGCAGATTTCGAAGCTTCAA+TGG | + | chr5.3:72619165-72619184 | None:intergenic | 40.0% | |
| TTCAGTTGCTCTATGGTCTA+AGG | - | chr5.3:72619267-72619286 | MS.gene47696:intron | 40.0% | |
| TTCGAAGCTTCAATGGCTTT+AGG | + | chr5.3:72619158-72619177 | None:intergenic | 40.0% | |
| TTGATTTCCGCATGGATGAA+TGG | - | chr5.3:72619057-72619076 | MS.gene47696:intron | 40.0% | |
| ! | AACTGAATGGAAGGAGTGTA+TGG | + | chr5.3:72619254-72619273 | None:intergenic | 40.0% |
| ! | AGAAAGAGCTTTCTGAGAAC+TGG | + | chr5.3:72619102-72619121 | None:intergenic | 40.0% |
| ! | ATGGATTTTGCTTATGGACC+TGG | - | chr5.3:72617688-72617707 | MS.gene47696:CDS | 40.0% |
| ! | CCTTCATTTGTTTCAGGTAC+CGG | - | chr5.3:72618233-72618252 | MS.gene47696:CDS | 40.0% |
| ! | GTGGATTGAACAAAGTTGCT+GGG | - | chr5.3:72619709-72619728 | MS.gene47696:intron | 40.0% |
| ! | TATTGACCGACTCAAAGTCA+GGG | - | chr5.3:72618116-72618135 | MS.gene47696:intron | 40.0% |
| !!! | CTTGACTTGGTTTTTGAGGA+AGG | - | chr5.3:72619296-72619315 | MS.gene47696:intron | 40.0% |
| AAAGATACAGTACGATCCCC+GGG | + | chr5.3:72618293-72618312 | None:intergenic | 45.0% | |
| ACATGTTCAGGGATGTTGGT+AGG | + | chr5.3:72617739-72617758 | None:intergenic | 45.0% | |
| ATTGTTGCCAAAAGGAGGAG+TGG | - | chr5.3:72619589-72619608 | MS.gene47696:CDS | 45.0% | |
| CAGTTGTGGGGATGAGAAAT+GGG | + | chr5.3:72617873-72617892 | None:intergenic | 45.0% | |
| CCATAGAGCAACTGAATGGA+AGG | + | chr5.3:72619263-72619282 | None:intergenic | 45.0% | |
| CCGGTACCTGAAACAAATGA+AGG | + | chr5.3:72618236-72618255 | None:intergenic | 45.0% | |
| CCTTCCATTCAGTTGCTCTA+TGG | - | chr5.3:72619260-72619279 | MS.gene47696:intron | 45.0% | |
| GACAAATACTTTGTCTCCCG+GGG | - | chr5.3:72618274-72618293 | MS.gene47696:CDS | 45.0% | |
| GATTTCCGCATGGATGAATG+GGG | - | chr5.3:72619059-72619078 | MS.gene47696:intron | 45.0% | |
| GGAATGGGAATTGTATGTGC+AGG | - | chr5.3:72619131-72619150 | MS.gene47696:intron | 45.0% | |
| GGAGATGACACTCAAAGATG+TGG | - | chr5.3:72620127-72620146 | MS.gene47696:CDS | 45.0% | |
| GTTGATGCGGTGTCTTCAAT+CGG | - | chr5.3:72619029-72619048 | MS.gene47696:intron | 45.0% | |
| TAGGTCCAGGAACAAAGAGA+TGG | + | chr5.3:72617720-72617739 | None:intergenic | 45.0% | |
| ! | ACTCAAAGATGTGGGTTACC+CGG | - | chr5.3:72620136-72620155 | MS.gene47696:CDS | 45.0% |
| ! | CACTATACCACTCCTCCTTT+TGG | + | chr5.3:72619599-72619618 | None:intergenic | 45.0% |
| ! | CTATTGACCGACTCAAAGTC+AGG | - | chr5.3:72618115-72618134 | MS.gene47696:intron | 45.0% |
| ! | TCGGACAATTCAGCTTGCTT+TGG | - | chr5.3:72618318-72618337 | MS.gene47696:CDS | 45.0% |
| !! | GGTGGATTGAACAAAGTTGC+TGG | - | chr5.3:72619708-72619727 | MS.gene47696:intron | 45.0% |
| !!! | AGCCCTTGACTTGGTTTTTG+AGG | - | chr5.3:72619292-72619311 | MS.gene47696:intron | 45.0% |
| !!! | CAACTTTTGGGATGTCTTGC+TGG | - | chr5.3:72620101-72620120 | MS.gene47696:CDS | 45.0% |
| AGCGTTTAGCCAAAGCAACC+AGG | - | chr5.3:72619345-72619364 | MS.gene47696:intron | 50.0% | |
| CCAGTTGTGGGGATGAGAAA+TGG | + | chr5.3:72617874-72617893 | None:intergenic | 50.0% | |
| CCATTTCTCATCCCCACAAC+TGG | - | chr5.3:72617871-72617890 | MS.gene47696:intron | 50.0% | |
| CTACACCCCATTCATCCATG+CGG | + | chr5.3:72619067-72619086 | None:intergenic | 50.0% | |
| GTAGAAAGTGAATGGGGCCA+GGG | - | chr5.3:72618380-72618399 | MS.gene47696:intron | 50.0% | |
| GTTAGAAGGGATGCTCACCA+AGG | + | chr5.3:72618532-72618551 | None:intergenic | 50.0% | |
| GTTCCTCCCAACATTGACAG+TGG | - | chr5.3:72619639-72619658 | MS.gene47696:CDS | 50.0% | |
| TCACCACTGTCAATGTTGGG+AGG | + | chr5.3:72619645-72619664 | None:intergenic | 50.0% | |
| TGTAGAAAGTGAATGGGGCC+AGG | - | chr5.3:72618379-72618398 | MS.gene47696:intron | 50.0% | |
| ! | TTTGGGATGTCTTGCTGGTG+TGG | - | chr5.3:72620106-72620125 | MS.gene47696:CDS | 50.0% |
| !! | CAATAATGAGTGCTGGGTGC+TGG | + | chr5.3:72619010-72619029 | None:intergenic | 50.0% |
| !! | TGTTTCAGGTACCGGTGCAT+GGG | - | chr5.3:72618241-72618260 | MS.gene47696:CDS | 50.0% |
| !! | TTGTTTCAGGTACCGGTGCA+TGG | - | chr5.3:72618240-72618259 | MS.gene47696:CDS | 50.0% |
| ACTCCACTCCCAAGCTTGAC+CGG | + | chr5.3:72620158-72620177 | None:intergenic | 55.0% | |
| CAATGCACTCTCCCATGCAC+CGG | + | chr5.3:72618255-72618274 | None:intergenic | 55.0% | |
| CGGAGCTCTTGATTTCCGCA+TGG | - | chr5.3:72619049-72619068 | MS.gene47696:intron | 55.0% | |
| CTAGCGCCCTGACTTTGAGT+CGG | + | chr5.3:72618125-72618144 | None:intergenic | 55.0% | |
| GAGCATCAAGATCAGCACCC+TGG | + | chr5.3:72618400-72618419 | None:intergenic | 55.0% | |
| GGATGAATGGGGTGTAGACG+TGG | - | chr5.3:72619070-72619089 | MS.gene47696:intron | 55.0% | |
| TCTAAGGGCAGCCCTTGACT+TGG | - | chr5.3:72619283-72619302 | MS.gene47696:intron | 55.0% | |
| TGGGTTACCCGGTCAAGCTT+GGG | - | chr5.3:72620147-72620166 | MS.gene47696:CDS | 55.0% | |
| ! | TAGGCTTGCAGTAGAGGCGT+GGG | - | chr5.3:72619557-72619576 | MS.gene47696:CDS | 55.0% |
| ! | TCAGGGATGTTGGTAGGTCC+AGG | + | chr5.3:72617733-72617752 | None:intergenic | 55.0% |
| CTCCACTCCCAAGCTTGACC+GGG | + | chr5.3:72620157-72620176 | None:intergenic | 60.0% | |
| GGTCAAGCTTGGGAGTGGAG+TGG | - | chr5.3:72620157-72620176 | MS.gene47696:CDS | 60.0% | |
| GTAGGCTTGCAGTAGAGGCG+TGG | - | chr5.3:72619556-72619575 | MS.gene47696:CDS | 60.0% | |
| TACCCGGTCAAGCTTGGGAG+TGG | - | chr5.3:72620152-72620171 | MS.gene47696:CDS | 60.0% | |
| ! | AGGCTTGCAGTAGAGGCGTG+GGG | - | chr5.3:72619558-72619577 | MS.gene47696:CDS | 60.0% |
| ! | GTGGGTTACCCGGTCAAGCT+TGG | - | chr5.3:72620146-72620165 | MS.gene47696:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 72617688 | 72620235 | 72617688 | ID=MS.gene47696 |
| chr5.3 | mRNA | 72617688 | 72620235 | 72617688 | ID=MS.gene47696.t1;Parent=MS.gene47696 |
| chr5.3 | exon | 72620031 | 72620235 | 72620031 | ID=MS.gene47696.t1.exon1;Parent=MS.gene47696.t1 |
| chr5.3 | CDS | 72620031 | 72620235 | 72620031 | ID=cds.MS.gene47696.t1;Parent=MS.gene47696.t1 |
| chr5.3 | exon | 72619390 | 72619674 | 72619390 | ID=MS.gene47696.t1.exon2;Parent=MS.gene47696.t1 |
| chr5.3 | CDS | 72619390 | 72619674 | 72619390 | ID=cds.MS.gene47696.t1;Parent=MS.gene47696.t1 |
| chr5.3 | exon | 72618557 | 72618923 | 72618557 | ID=MS.gene47696.t1.exon3;Parent=MS.gene47696.t1 |
| chr5.3 | CDS | 72618557 | 72618923 | 72618557 | ID=cds.MS.gene47696.t1;Parent=MS.gene47696.t1 |
| chr5.3 | exon | 72618153 | 72618363 | 72618153 | ID=MS.gene47696.t1.exon4;Parent=MS.gene47696.t1 |
| chr5.3 | CDS | 72618153 | 72618363 | 72618153 | ID=cds.MS.gene47696.t1;Parent=MS.gene47696.t1 |
| chr5.3 | exon | 72617688 | 72617825 | 72617688 | ID=MS.gene47696.t1.exon5;Parent=MS.gene47696.t1 |
| chr5.3 | CDS | 72617688 | 72617825 | 72617688 | ID=cds.MS.gene47696.t1;Parent=MS.gene47696.t1 |
| Gene Sequence |
| Protein sequence |
