Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48519.t1 | XP_003602283.2 | 72.9 | 306 | 13 | 3 | 1 | 236 | 1 | 306 | 6.60E-100 | 373.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48519.t1 | Q8LAP8 | 66.3 | 101 | 20 | 3 | 1 | 89 | 1 | 99 | 2.1e-30 | 134.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48519.t1 | G7J7H3 | 72.9 | 306 | 13 | 3 | 1 | 236 | 1 | 306 | 4.8e-100 | 373.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene48519.t1 | TF | C2C2-Dof |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene48519 | 0.884422 | 1.94E-71 | -1.69E-46 |
| MS.gene049254 | MS.gene48519 | 0.818163 | 2.26E-52 | -1.69E-46 |
| MS.gene049350 | MS.gene48519 | 0.853769 | 1.92E-61 | -1.69E-46 |
| MS.gene049368 | MS.gene48519 | 0.827176 | 1.81E-54 | -1.69E-46 |
| MS.gene049672 | MS.gene48519 | 0.822373 | 2.45E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene48519 | 0.848782 | 4.92E-60 | -1.69E-46 |
| MS.gene049807 | MS.gene48519 | 0.837766 | 4.28E-57 | -1.69E-46 |
| MS.gene049808 | MS.gene48519 | 0.813492 | 2.49E-51 | -1.69E-46 |
| MS.gene050901 | MS.gene48519 | 0.814401 | 1.57E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene48519 | 0.812446 | 4.22E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene48519 | 0.802823 | 4.67E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene48519 | 0.828258 | 9.94E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene48519 | 0.836575 | 8.64E-57 | -1.69E-46 |
| MS.gene051744 | MS.gene48519 | 0.82678 | 2.25E-54 | -1.69E-46 |
| MS.gene051957 | MS.gene48519 | 0.800028 | 1.75E-48 | -1.69E-46 |
| MS.gene052000 | MS.gene48519 | 0.826708 | 2.34E-54 | -1.69E-46 |
| MS.gene052155 | MS.gene48519 | -0.806425 | 8.28E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene48519 | 0.810904 | 9.14E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene48519 | 0.808398 | 3.16E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene48519 | 0.84549 | 3.93E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene48519 | 0.809186 | 2.14E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene48519 | 0.810966 | 8.86E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene48519 | 0.814527 | 1.47E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene48519 | 0.80723 | 5.60E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene48519 | 0.837324 | 5.56E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene48519 | 0.822135 | 2.78E-53 | -1.69E-46 |
| MS.gene053272 | MS.gene48519 | -0.803842 | 2.87E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene48519 | 0.829695 | 4.46E-55 | -1.69E-46 |
| MS.gene053538 | MS.gene48519 | 0.827886 | 1.22E-54 | -1.69E-46 |
| MS.gene053541 | MS.gene48519 | 0.803739 | 3.02E-49 | -1.69E-46 |
| MS.gene053542 | MS.gene48519 | 0.81212 | 4.97E-51 | -1.69E-46 |
| MS.gene054142 | MS.gene48519 | 0.843628 | 1.25E-58 | -1.69E-46 |
| MS.gene054584 | MS.gene48519 | 0.822346 | 2.49E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene48519 | 0.836273 | 1.03E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene48519 | 0.811206 | 7.86E-51 | -1.69E-46 |
| MS.gene054775 | MS.gene48519 | 0.801261 | 9.79E-49 | -1.69E-46 |
| MS.gene055083 | MS.gene48519 | 0.809973 | 1.45E-50 | -1.69E-46 |
| MS.gene055144 | MS.gene48519 | 0.817424 | 3.32E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene48519 | 0.835884 | 1.29E-56 | -1.69E-46 |
| MS.gene055466 | MS.gene48519 | 0.823519 | 1.33E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene48519 | 0.811355 | 7.30E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene48519 | 0.821861 | 3.22E-53 | -1.69E-46 |
| MS.gene055537 | MS.gene48519 | 0.819469 | 1.14E-52 | -1.69E-46 |
| MS.gene055580 | MS.gene48519 | -0.808409 | 3.14E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene48519 | 0.809747 | 1.62E-50 | -1.69E-46 |
| MS.gene055890 | MS.gene48519 | 0.801902 | 7.23E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene48519 | 0.826656 | 2.41E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene48519 | 0.838842 | 2.26E-57 | -1.69E-46 |
| MS.gene056366 | MS.gene48519 | 0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene48519 | 0.818202 | 2.22E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene48519 | 0.80415 | 2.48E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene48519 | 0.82784 | 1.25E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene48519 | 0.814618 | 1.41E-51 | -1.69E-46 |
| MS.gene057132 | MS.gene48519 | 0.952422 | 2.51E-110 | -1.69E-46 |
| MS.gene057208 | MS.gene48519 | 0.803962 | 2.71E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene48519 | 0.806922 | 6.50E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene48519 | 0.810576 | 1.08E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene48519 | 0.829027 | 6.48E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene48519 | 0.821949 | 3.08E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene48519 | 0.801105 | 1.05E-48 | -1.69E-46 |
| MS.gene058783 | MS.gene48519 | 0.809882 | 1.52E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene48519 | 0.865232 | 6.86E-65 | -1.69E-46 |
| MS.gene058979 | MS.gene48519 | 0.801337 | 9.45E-49 | -1.69E-46 |
| MS.gene05897 | MS.gene48519 | 0.811048 | 8.51E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene48519 | 0.814567 | 1.44E-51 | -1.69E-46 |
| MS.gene059424 | MS.gene48519 | 0.815409 | 9.38E-52 | -1.69E-46 |
| MS.gene059570 | MS.gene48519 | 0.811697 | 6.15E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene48519 | 0.805164 | 1.52E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene48519 | 0.826058 | 3.34E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene48519 | 0.818327 | 2.08E-52 | -1.69E-46 |
| MS.gene060962 | MS.gene48519 | 0.833834 | 4.25E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene48519 | 0.811844 | 5.71E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene48519 | 0.835563 | 1.56E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48519.t1 | MTR_3g091820 | 98.969 | 194 | 1 | 1 | 1 | 193 | 1 | 194 | 5.89e-139 | 392 |
| MS.gene48519.t1 | MTR_3g091820 | 85.714 | 42 | 6 | 0 | 195 | 236 | 265 | 306 | 9.11e-16 | 75.1 |
| MS.gene48519.t1 | MTR_8g027295 | 50.769 | 195 | 78 | 6 | 17 | 209 | 1 | 179 | 2.09e-53 | 173 |
| MS.gene48519.t1 | MTR_1g077600 | 48.095 | 210 | 73 | 9 | 1 | 204 | 1 | 180 | 2.32e-44 | 150 |
| MS.gene48519.t1 | MTR_1g077600 | 48.095 | 210 | 73 | 9 | 1 | 204 | 1 | 180 | 2.76e-44 | 150 |
| MS.gene48519.t1 | MTR_2g093220 | 86.364 | 66 | 9 | 0 | 32 | 97 | 29 | 94 | 1.97e-37 | 132 |
| MS.gene48519.t1 | MTR_3g077750 | 62.500 | 96 | 28 | 2 | 5 | 93 | 17 | 111 | 8.22e-36 | 129 |
| MS.gene48519.t1 | MTR_4g022370 | 48.322 | 149 | 63 | 3 | 19 | 163 | 54 | 192 | 2.45e-34 | 126 |
| MS.gene48519.t1 | MTR_4g461080 | 56.897 | 116 | 49 | 1 | 32 | 147 | 18 | 132 | 1.47e-33 | 122 |
| MS.gene48519.t1 | MTR_3g090430 | 61.798 | 89 | 30 | 1 | 13 | 97 | 17 | 105 | 1.24e-32 | 121 |
| MS.gene48519.t1 | MTR_4g063780 | 50.769 | 130 | 54 | 3 | 28 | 149 | 56 | 183 | 6.89e-32 | 119 |
| MS.gene48519.t1 | MTR_2g096740 | 68.354 | 79 | 22 | 1 | 32 | 107 | 66 | 144 | 2.13e-31 | 117 |
| MS.gene48519.t1 | MTR_2g096740 | 68.354 | 79 | 22 | 1 | 32 | 107 | 51 | 129 | 2.31e-31 | 117 |
| MS.gene48519.t1 | MTR_8g068210 | 67.568 | 74 | 24 | 0 | 32 | 105 | 21 | 94 | 3.07e-31 | 117 |
| MS.gene48519.t1 | MTR_7g024670 | 53.774 | 106 | 44 | 1 | 11 | 111 | 40 | 145 | 2.72e-30 | 115 |
| MS.gene48519.t1 | MTR_1g056810 | 87.037 | 54 | 7 | 0 | 44 | 97 | 13 | 66 | 5.17e-30 | 113 |
| MS.gene48519.t1 | MTR_8g479350 | 49.580 | 119 | 44 | 3 | 38 | 156 | 63 | 165 | 1.19e-29 | 113 |
| MS.gene48519.t1 | MTR_7g059400 | 64.865 | 74 | 22 | 1 | 28 | 97 | 57 | 130 | 3.21e-29 | 112 |
| MS.gene48519.t1 | MTR_4g088580 | 50.000 | 122 | 44 | 3 | 45 | 164 | 57 | 163 | 5.82e-29 | 112 |
| MS.gene48519.t1 | MTR_2g014060 | 70.769 | 65 | 14 | 1 | 30 | 94 | 17 | 76 | 1.51e-28 | 110 |
| MS.gene48519.t1 | MTR_8g079060 | 56.627 | 83 | 35 | 1 | 33 | 114 | 18 | 100 | 2.40e-28 | 107 |
| MS.gene48519.t1 | MTR_3g435480 | 53.763 | 93 | 40 | 1 | 32 | 124 | 125 | 214 | 2.85e-28 | 111 |
| MS.gene48519.t1 | MTR_8g015840 | 71.212 | 66 | 17 | 2 | 37 | 101 | 15 | 79 | 6.41e-28 | 106 |
| MS.gene48519.t1 | MTR_4g089095 | 65.789 | 76 | 21 | 2 | 26 | 97 | 29 | 103 | 1.20e-27 | 107 |
| MS.gene48519.t1 | MTR_2g059540 | 86.000 | 50 | 7 | 0 | 42 | 91 | 30 | 79 | 1.89e-27 | 104 |
| MS.gene48519.t1 | MTR_5g031440 | 77.778 | 54 | 12 | 0 | 40 | 93 | 40 | 93 | 1.99e-27 | 107 |
| MS.gene48519.t1 | MTR_2g014170 | 58.427 | 89 | 27 | 1 | 3 | 91 | 15 | 93 | 4.10e-27 | 106 |
| MS.gene48519.t1 | MTR_4g089095 | 77.193 | 57 | 12 | 1 | 41 | 97 | 14 | 69 | 5.28e-27 | 104 |
| MS.gene48519.t1 | MTR_2g013370 | 64.706 | 68 | 23 | 1 | 30 | 97 | 33 | 99 | 9.79e-27 | 104 |
| MS.gene48519.t1 | MTR_4g082060 | 58.904 | 73 | 30 | 0 | 29 | 101 | 108 | 180 | 1.22e-26 | 107 |
| MS.gene48519.t1 | MTR_7g010950 | 68.852 | 61 | 19 | 0 | 40 | 100 | 132 | 192 | 1.23e-26 | 107 |
| MS.gene48519.t1 | MTR_4g109980 | 77.358 | 53 | 12 | 0 | 41 | 93 | 38 | 90 | 1.59e-26 | 104 |
| MS.gene48519.t1 | MTR_6g012450 | 52.688 | 93 | 37 | 1 | 8 | 100 | 108 | 193 | 3.62e-26 | 105 |
| MS.gene48519.t1 | MTR_8g044220 | 59.701 | 67 | 27 | 0 | 32 | 98 | 107 | 173 | 5.60e-26 | 105 |
| MS.gene48519.t1 | MTR_7g086780 | 56.098 | 82 | 32 | 1 | 23 | 100 | 75 | 156 | 8.36e-26 | 104 |
| MS.gene48519.t1 | MTR_5g041420 | 58.108 | 74 | 31 | 0 | 30 | 103 | 125 | 198 | 1.45e-25 | 102 |
| MS.gene48519.t1 | MTR_6g027450 | 55.405 | 74 | 33 | 0 | 27 | 100 | 73 | 146 | 6.96e-25 | 100 |
| MS.gene48519.t1 | MTR_2g016030 | 64.912 | 57 | 20 | 0 | 40 | 96 | 44 | 100 | 2.40e-24 | 95.1 |
| MS.gene48519.t1 | MTR_6g027460 | 47.872 | 94 | 47 | 1 | 27 | 118 | 80 | 173 | 3.82e-24 | 99.4 |
| MS.gene48519.t1 | MTR_5g041530 | 58.209 | 67 | 28 | 0 | 30 | 96 | 127 | 193 | 5.40e-23 | 96.3 |
| MS.gene48519.t1 | MTR_5g041380 | 60.606 | 66 | 26 | 0 | 40 | 105 | 124 | 189 | 4.54e-22 | 93.6 |
| MS.gene48519.t1 | MTR_5g041400 | 60.606 | 66 | 26 | 0 | 40 | 105 | 116 | 181 | 4.59e-22 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48519.t1 | AT4G24060 | 52.601 | 173 | 59 | 5 | 1 | 155 | 1 | 168 | 1.20e-43 | 150 |
| MS.gene48519.t1 | AT3G61850 | 39.316 | 234 | 73 | 7 | 1 | 188 | 1 | 211 | 6.15e-42 | 145 |
| MS.gene48519.t1 | AT3G61850 | 35.099 | 302 | 124 | 11 | 1 | 236 | 1 | 296 | 4.03e-41 | 142 |
| MS.gene48519.t1 | AT3G61850 | 49.112 | 169 | 58 | 6 | 29 | 188 | 50 | 199 | 1.49e-40 | 141 |
| MS.gene48519.t1 | AT3G61850 | 38.589 | 241 | 109 | 9 | 29 | 236 | 50 | 284 | 7.51e-40 | 139 |
| MS.gene48519.t1 | AT3G61850 | 38.589 | 241 | 109 | 9 | 29 | 236 | 50 | 284 | 7.51e-40 | 139 |
| MS.gene48519.t1 | AT1G64620 | 66.667 | 99 | 23 | 3 | 1 | 91 | 1 | 97 | 9.90e-40 | 140 |
| MS.gene48519.t1 | AT5G60200 | 54.545 | 121 | 46 | 2 | 9 | 120 | 12 | 132 | 9.58e-38 | 132 |
| MS.gene48519.t1 | AT2G46590 | 54.321 | 162 | 50 | 6 | 17 | 171 | 44 | 188 | 5.58e-36 | 130 |
| MS.gene48519.t1 | AT2G46590 | 53.503 | 157 | 59 | 5 | 17 | 171 | 56 | 200 | 6.68e-36 | 130 |
| MS.gene48519.t1 | AT3G55370 | 71.951 | 82 | 18 | 2 | 29 | 106 | 59 | 139 | 1.68e-34 | 125 |
| MS.gene48519.t1 | AT3G55370 | 71.951 | 82 | 18 | 2 | 29 | 106 | 104 | 184 | 2.35e-34 | 126 |
| MS.gene48519.t1 | AT3G55370 | 71.951 | 82 | 18 | 2 | 29 | 106 | 59 | 139 | 2.35e-34 | 126 |
| MS.gene48519.t1 | AT2G28510 | 51.538 | 130 | 42 | 3 | 41 | 150 | 46 | 174 | 2.57e-34 | 124 |
| MS.gene48519.t1 | AT5G60850 | 70.270 | 74 | 22 | 0 | 41 | 114 | 49 | 122 | 1.83e-32 | 120 |
| MS.gene48519.t1 | AT4G00940 | 60.185 | 108 | 35 | 2 | 30 | 131 | 57 | 162 | 2.59e-32 | 119 |
| MS.gene48519.t1 | AT4G00940 | 60.185 | 108 | 35 | 2 | 30 | 131 | 57 | 162 | 2.59e-32 | 119 |
| MS.gene48519.t1 | AT4G00940 | 60.185 | 108 | 35 | 2 | 30 | 131 | 57 | 162 | 2.59e-32 | 119 |
| MS.gene48519.t1 | AT3G45610 | 76.190 | 63 | 15 | 0 | 40 | 102 | 37 | 99 | 3.36e-32 | 118 |
| MS.gene48519.t1 | AT1G51700 | 71.831 | 71 | 18 | 2 | 37 | 106 | 28 | 97 | 6.36e-31 | 113 |
| MS.gene48519.t1 | AT5G65590 | 60.227 | 88 | 30 | 1 | 16 | 103 | 19 | 101 | 2.17e-30 | 115 |
| MS.gene48519.t1 | AT2G37590 | 67.123 | 73 | 21 | 1 | 29 | 98 | 72 | 144 | 2.63e-30 | 115 |
| MS.gene48519.t1 | AT3G52440 | 82.759 | 58 | 10 | 0 | 45 | 102 | 27 | 84 | 3.84e-30 | 112 |
| MS.gene48519.t1 | AT3G52440 | 82.759 | 58 | 10 | 0 | 45 | 102 | 46 | 103 | 4.17e-30 | 113 |
| MS.gene48519.t1 | AT5G62940 | 77.049 | 61 | 14 | 0 | 33 | 93 | 63 | 123 | 5.27e-30 | 115 |
| MS.gene48519.t1 | AT5G02460 | 66.216 | 74 | 21 | 1 | 28 | 97 | 76 | 149 | 7.80e-30 | 115 |
| MS.gene48519.t1 | AT1G21340 | 81.034 | 58 | 11 | 0 | 45 | 102 | 40 | 97 | 2.53e-29 | 110 |
| MS.gene48519.t1 | AT3G21270 | 84.906 | 53 | 8 | 0 | 43 | 95 | 29 | 81 | 5.72e-29 | 108 |
| MS.gene48519.t1 | AT1G28310 | 81.818 | 55 | 10 | 0 | 43 | 97 | 27 | 81 | 1.77e-28 | 109 |
| MS.gene48519.t1 | AT1G07640 | 65.278 | 72 | 22 | 1 | 29 | 97 | 60 | 131 | 2.32e-28 | 110 |
| MS.gene48519.t1 | AT1G28310 | 81.818 | 55 | 10 | 0 | 43 | 97 | 51 | 105 | 2.43e-28 | 110 |
| MS.gene48519.t1 | AT1G07640 | 65.278 | 72 | 22 | 1 | 29 | 97 | 4 | 75 | 2.78e-28 | 108 |
| MS.gene48519.t1 | AT1G07640 | 65.278 | 72 | 22 | 1 | 29 | 97 | 68 | 139 | 3.19e-28 | 109 |
| MS.gene48519.t1 | AT5G66940 | 69.565 | 69 | 19 | 2 | 38 | 105 | 28 | 95 | 1.02e-27 | 105 |
| MS.gene48519.t1 | AT2G28810 | 67.188 | 64 | 20 | 1 | 31 | 94 | 66 | 128 | 1.37e-27 | 107 |
| MS.gene48519.t1 | AT4G38000 | 62.162 | 74 | 27 | 1 | 24 | 96 | 22 | 95 | 1.87e-27 | 105 |
| MS.gene48519.t1 | AT2G28810 | 67.188 | 64 | 20 | 1 | 31 | 94 | 83 | 145 | 2.28e-27 | 107 |
| MS.gene48519.t1 | AT3G50410 | 69.841 | 63 | 17 | 1 | 37 | 97 | 22 | 84 | 4.84e-27 | 104 |
| MS.gene48519.t1 | AT4G21050 | 71.875 | 64 | 17 | 1 | 45 | 108 | 26 | 88 | 1.16e-26 | 102 |
| MS.gene48519.t1 | AT1G47655 | 73.214 | 56 | 15 | 0 | 37 | 92 | 23 | 78 | 2.38e-26 | 102 |
| MS.gene48519.t1 | AT1G69570 | 67.742 | 62 | 20 | 0 | 35 | 96 | 124 | 185 | 8.70e-26 | 103 |
| MS.gene48519.t1 | AT5G39660 | 68.852 | 61 | 19 | 0 | 40 | 100 | 135 | 195 | 1.41e-25 | 103 |
| MS.gene48519.t1 | AT5G39660 | 68.852 | 61 | 19 | 0 | 40 | 100 | 135 | 195 | 1.41e-25 | 103 |
| MS.gene48519.t1 | AT5G39660 | 68.852 | 61 | 19 | 0 | 40 | 100 | 135 | 195 | 1.41e-25 | 103 |
| MS.gene48519.t1 | AT3G47500 | 68.333 | 60 | 19 | 0 | 41 | 100 | 108 | 167 | 1.87e-25 | 103 |
| MS.gene48519.t1 | AT4G21040 | 67.188 | 64 | 19 | 1 | 45 | 108 | 27 | 88 | 2.14e-25 | 100 |
| MS.gene48519.t1 | AT2G34140 | 62.903 | 62 | 23 | 0 | 35 | 96 | 50 | 111 | 2.15e-25 | 98.2 |
| MS.gene48519.t1 | AT1G26790 | 67.742 | 62 | 20 | 0 | 40 | 101 | 108 | 169 | 2.82e-25 | 102 |
| MS.gene48519.t1 | AT1G29160 | 55.844 | 77 | 32 | 1 | 20 | 96 | 41 | 115 | 3.70e-25 | 97.8 |
| MS.gene48519.t1 | AT5G62430 | 62.903 | 62 | 23 | 0 | 41 | 102 | 52 | 113 | 8.51e-25 | 99.8 |
| MS.gene48519.t1 | AT4G21080 | 49.425 | 87 | 32 | 2 | 45 | 121 | 27 | 111 | 6.49e-24 | 96.3 |
| MS.gene48519.t1 | AT4G21030 | 49.333 | 75 | 32 | 1 | 45 | 119 | 23 | 91 | 9.64e-15 | 70.5 |
Find 45 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTCCTTGATGGATCTT+AGG | 0.169048 | 3.2:-77315436 | None:intergenic |
| TGTTCAAACTCACCACTATT+TGG | 0.210892 | 3.2:-77315850 | None:intergenic |
| AAGGTGATTCTACTGGTTAT+TGG | 0.303787 | 3.2:+77315890 | MS.gene48519:CDS |
| GGTTAAGATCTTGTCCTTGA+TGG | 0.347085 | 3.2:-77315444 | None:intergenic |
| GCAAAACTTGTAGAAGGTAT+TGG | 0.349440 | 3.2:+77315227 | MS.gene48519:CDS |
| TATTGGATTGGTTAAACAAA+TGG | 0.368626 | 3.2:+77315048 | MS.gene48519:CDS |
| CTTGTCCTTGATGGATCTTA+GGG | 0.390118 | 3.2:-77315435 | None:intergenic |
| TGAAAACTGCTTCTTCATCA+AGG | 0.432756 | 3.2:+77315575 | MS.gene48519:CDS |
| AAGCTCAATGAATTTAGATA+TGG | 0.438747 | 3.2:-77315506 | None:intergenic |
| TTGTCTTGATCAGTTGTGTA+AGG | 0.463233 | 3.2:-77315529 | None:intergenic |
| CTCTCTAACATAGAAGGTGT+TGG | 0.476502 | 3.2:-77315094 | None:intergenic |
| AATTTAGGGGAATATTGGAT+TGG | 0.478716 | 3.2:+77315036 | MS.gene48519:intron |
| GATTCTACTGGTTATTGGAA+TGG | 0.482077 | 3.2:+77315895 | MS.gene48519:CDS |
| GAAAACTGCTTCTTCATCAA+GGG | 0.488666 | 3.2:+77315576 | MS.gene48519:CDS |
| CAGCAACAAATTCCAAATAG+TGG | 0.488831 | 3.2:+77315838 | MS.gene48519:CDS |
| TAATTATCCTCAGTTGTTTG+TGG | 0.490761 | 3.2:-77315478 | None:intergenic |
| TTGTTTGTGGTGGATAAGCT+AGG | 0.500159 | 3.2:-77315465 | None:intergenic |
| TTTCTTGAACCACCACCTAC+AGG | 0.506879 | 3.2:-77315277 | None:intergenic |
| AGAAATGTTCCTGTAGGTGG+TGG | 0.516507 | 3.2:+77315268 | MS.gene48519:CDS |
| TCTTTAAGAAATGTTCCTGT+AGG | 0.524165 | 3.2:+77315262 | MS.gene48519:CDS |
| GAATGTTCGGTGGAGGATCA+TGG | 0.528349 | 3.2:+77315917 | MS.gene48519:CDS |
| TTATCCTCAGTTGTTTGTGG+TGG | 0.529976 | 3.2:-77315475 | None:intergenic |
| TTAAGAAATGTTCCTGTAGG+TGG | 0.533560 | 3.2:+77315265 | MS.gene48519:CDS |
| AGACAAAACTACAAGTGCTA+TGG | 0.533697 | 3.2:+77315546 | MS.gene48519:CDS |
| AGAACTCAAGGTGATTCTAC+TGG | 0.537114 | 3.2:+77315883 | MS.gene48519:CDS |
| CATCAGCAAAATAGAACTCA+AGG | 0.544205 | 3.2:+77315871 | MS.gene48519:CDS |
| ATCTATGGACACAGCTCAGT+GGG | 0.545119 | 3.2:+77314598 | None:intergenic |
| GGTTATTGGAATGGAATGTT+CGG | 0.551153 | 3.2:+77315904 | MS.gene48519:CDS |
| GGATTGGTTAAACAAATGGA+TGG | 0.552908 | 3.2:+77315052 | MS.gene48519:CDS |
| TGGAATGGAATGTTCGGTGG+AGG | 0.558324 | 3.2:+77315910 | MS.gene48519:CDS |
| ATCAAGCTTTAAACTGTCCA+AGG | 0.561852 | 3.2:+77315137 | MS.gene48519:CDS |
| AAAACTGCTTCTTCATCAAG+GGG | 0.565168 | 3.2:+77315577 | MS.gene48519:CDS |
| CAAAACCCTAAGATCCATCA+AGG | 0.571674 | 3.2:+77315430 | MS.gene48519:CDS |
| TATTGGAATGGAATGTTCGG+TGG | 0.576421 | 3.2:+77315907 | MS.gene48519:CDS |
| TGTAGAAGGTATTGGACTGA+AGG | 0.583395 | 3.2:+77315235 | MS.gene48519:CDS |
| AAAAGTACCTTGGTTGTGAG+AGG | 0.583488 | 3.2:-77315204 | None:intergenic |
| GGTTGTGATTGTGAGATTGA+AGG | 0.587222 | 3.2:-77315328 | None:intergenic |
| AGAAGGTATTGGACTGAAGG+TGG | 0.592159 | 3.2:+77315238 | MS.gene48519:CDS |
| GGACACAGCTCAGTGGGCAC+AGG | 0.600044 | 3.2:+77314604 | MS.gene48519:CDS |
| GATTGAAGGTGATGATGATG+AGG | 0.631503 | 3.2:-77315314 | None:intergenic |
| ACTATAGCCTCTCACAACCA+AGG | 0.671979 | 3.2:+77315197 | MS.gene48519:CDS |
| GTGTTAGTTGAATTGCACCT+TGG | 0.675503 | 3.2:-77315154 | None:intergenic |
| AATCTATGGACACAGCTCAG+TGG | 0.676107 | 3.2:+77314597 | None:intergenic |
| TTATCCACCACAAACAACTG+AGG | 0.701982 | 3.2:+77315471 | MS.gene48519:CDS |
| CTATGTTAGAGAGAAAAGCA+AGG | 0.712069 | 3.2:+77315104 | MS.gene48519:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTATATAAGAAATAATAA+AGG | - | chr3.2:77314995-77315014 | None:intergenic | 10.0% |
| !!! | ATTATTTTTGAAAAATTTAG+GGG | + | chr3.2:77315023-77315042 | MS.gene48519:intron | 10.0% |
| !! | GAAGAAAAAAATAAATGAAA+AGG | - | chr3.2:77314854-77314873 | None:intergenic | 15.0% |
| !! | TGATACATAAAACTTTATTA+TGG | - | chr3.2:77314714-77314733 | None:intergenic | 15.0% |
| !!! | ATATTTTTTGTTATTGATGA+TGG | - | chr3.2:77315355-77315374 | None:intergenic | 15.0% |
| !!! | AAAACTGAAATTTTTAGTTG+AGG | - | chr3.2:77314805-77314824 | None:intergenic | 20.0% |
| !!! | AAATTCATCAACTTTTTCTT+GGG | - | chr3.2:77314910-77314929 | None:intergenic | 20.0% |
| !!! | TTTTCTTCATGATTATAAGA+AGG | - | chr3.2:77314659-77314678 | None:intergenic | 20.0% |
| ! | AAGCTCAATGAATTTAGATA+TGG | - | chr3.2:77315509-77315528 | None:intergenic | 25.0% |
| ! | AATAAAGGAAACAAACAAGA+AGG | - | chr3.2:77314980-77314999 | None:intergenic | 25.0% |
| ! | TGAAAAATTTAGGGGAATAT+TGG | + | chr3.2:77315031-77315050 | MS.gene48519:intron | 25.0% |
| !!! | CAAATTCATCAACTTTTTCT+TGG | - | chr3.2:77314911-77314930 | None:intergenic | 25.0% |
| !!! | GTTGATTATTGTTAGTTCTA+AGG | + | chr3.2:77314742-77314761 | MS.gene48519:intron | 25.0% |
| !!! | TATTGGATTGGTTAAACAAA+TGG | + | chr3.2:77315048-77315067 | MS.gene48519:CDS | 25.0% |
| !!! | TTTAAAGCTTGATCTTTTTG+TGG | - | chr3.2:77315130-77315149 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTATTGATGATGG+AGG | - | chr3.2:77315352-77315371 | None:intergenic | 25.0% |
| AATTTAGGGGAATATTGGAT+TGG | + | chr3.2:77315036-77315055 | MS.gene48519:intron | 30.0% | |
| AGTGCAATGTATAATTCAAG+TGG | + | chr3.2:77315637-77315656 | MS.gene48519:intron | 30.0% | |
| CAAGGGATTAATAATCAAGA+GGG | + | chr3.2:77315733-77315752 | MS.gene48519:intron | 30.0% | |
| GAAGGAAAGAAAACAGAAAA+AGG | - | chr3.2:77314641-77314660 | None:intergenic | 30.0% | |
| TAATTATCCTCAGTTGTTTG+TGG | - | chr3.2:77315481-77315500 | None:intergenic | 30.0% | |
| ! | ACTTTTGCAAAACTTGTAGA+AGG | + | chr3.2:77315221-77315240 | MS.gene48519:CDS | 30.0% |
| ! | CTTTGCAAGATTTTAAGCTT+GGG | + | chr3.2:77315665-77315684 | MS.gene48519:intron | 30.0% |
| ! | CTTTTTCTTGGGAAAAAGAA+AGG | - | chr3.2:77314899-77314918 | None:intergenic | 30.0% |
| ! | TCTTTAAGAAATGTTCCTGT+AGG | + | chr3.2:77315262-77315281 | MS.gene48519:CDS | 30.0% |
| ! | TTTAAGCTTGGGGTTAATTT+TGG | + | chr3.2:77315676-77315695 | MS.gene48519:intron | 30.0% |
| ! | TTTGCAAGATTTTAAGCTTG+GGG | + | chr3.2:77315666-77315685 | MS.gene48519:intron | 30.0% |
| !!! | GAAATTTTTAGTTGAGGATC+AGG | - | chr3.2:77314799-77314818 | None:intergenic | 30.0% |
| !!! | GGGTTAATTTTGGTTTAGAA+GGG | + | chr3.2:77315686-77315705 | MS.gene48519:intron | 30.0% |
| AAAACTGCTTCTTCATCAAG+GGG | + | chr3.2:77315577-77315596 | MS.gene48519:CDS | 35.0% | |
| AACTGATGATCATCTACAAC+AGG | - | chr3.2:77315805-77315824 | None:intergenic | 35.0% | |
| AGACAAAACTACAAGTGCTA+TGG | + | chr3.2:77315546-77315565 | MS.gene48519:CDS | 35.0% | |
| AGGATCAGGAAAAGTAGTAA+AGG | - | chr3.2:77314785-77314804 | None:intergenic | 35.0% | |
| CAGCAACAAATTCCAAATAG+TGG | + | chr3.2:77315838-77315857 | MS.gene48519:CDS | 35.0% | |
| CATCAGCAAAATAGAACTCA+AGG | + | chr3.2:77315871-77315890 | MS.gene48519:CDS | 35.0% | |
| CTATGTTAGAGAGAAAAGCA+AGG | + | chr3.2:77315104-77315123 | MS.gene48519:CDS | 35.0% | |
| GAAAACTGCTTCTTCATCAA+GGG | + | chr3.2:77315576-77315595 | MS.gene48519:CDS | 35.0% | |
| GCAAGGGATTAATAATCAAG+AGG | + | chr3.2:77315732-77315751 | MS.gene48519:intron | 35.0% | |
| GGTTATTGGAATGGAATGTT+CGG | + | chr3.2:77315904-77315923 | MS.gene48519:CDS | 35.0% | |
| TGAAAACTGCTTCTTCATCA+AGG | + | chr3.2:77315575-77315594 | MS.gene48519:CDS | 35.0% | |
| TGTTCAAACTCACCACTATT+TGG | - | chr3.2:77315853-77315872 | None:intergenic | 35.0% | |
| TTAAGAAATGTTCCTGTAGG+TGG | + | chr3.2:77315265-77315284 | MS.gene48519:CDS | 35.0% | |
| TTGTCTTGATCAGTTGTGTA+AGG | - | chr3.2:77315532-77315551 | None:intergenic | 35.0% | |
| ! | AAGGTGATTCTACTGGTTAT+TGG | + | chr3.2:77315890-77315909 | MS.gene48519:CDS | 35.0% |
| ! | GATTCTACTGGTTATTGGAA+TGG | + | chr3.2:77315895-77315914 | MS.gene48519:CDS | 35.0% |
| ! | GCAAAACTTGTAGAAGGTAT+TGG | + | chr3.2:77315227-77315246 | MS.gene48519:CDS | 35.0% |
| ! | GCTTTGCAAGATTTTAAGCT+TGG | + | chr3.2:77315664-77315683 | MS.gene48519:intron | 35.0% |
| ! | GCTTTTCTCTCTAACATAGA+AGG | - | chr3.2:77315103-77315122 | None:intergenic | 35.0% |
| !! | ATCAAGCTTTAAACTGTCCA+AGG | + | chr3.2:77315137-77315156 | MS.gene48519:CDS | 35.0% |
| !! | GGATTGGTTAAACAAATGGA+TGG | + | chr3.2:77315052-77315071 | MS.gene48519:CDS | 35.0% |
| !!! | CAAGTTTTGCAAAAGTACCT+TGG | - | chr3.2:77315217-77315236 | None:intergenic | 35.0% |
| !!! | GGGGTTAATTTTGGTTTAGA+AGG | + | chr3.2:77315685-77315704 | MS.gene48519:intron | 35.0% |
| AATAATCAAGAGGGTTCTGC+TGG | + | chr3.2:77315742-77315761 | MS.gene48519:intron | 40.0% | |
| AGAACTCAAGGTGATTCTAC+TGG | + | chr3.2:77315883-77315902 | MS.gene48519:CDS | 40.0% | |
| CAAAACCCTAAGATCCATCA+AGG | + | chr3.2:77315430-77315449 | MS.gene48519:CDS | 40.0% | |
| CTAGACTCAGACAAAGTCAT+AGG | - | chr3.2:77315619-77315638 | None:intergenic | 40.0% | |
| GAAGGGTTTGAGAATGGTTA+TGG | + | chr3.2:77315703-77315722 | MS.gene48519:intron | 40.0% | |
| GGTTAAGATCTTGTCCTTGA+TGG | - | chr3.2:77315447-77315466 | None:intergenic | 40.0% | |
| GGTTGTGATTGTGAGATTGA+AGG | - | chr3.2:77315331-77315350 | None:intergenic | 40.0% | |
| GGTTTAGAAGGGTTTGAGAA+TGG | + | chr3.2:77315697-77315716 | MS.gene48519:intron | 40.0% | |
| GTGTTAGTTGAATTGCACCT+TGG | - | chr3.2:77315157-77315176 | None:intergenic | 40.0% | |
| TATTGGAATGGAATGTTCGG+TGG | + | chr3.2:77315907-77315926 | MS.gene48519:CDS | 40.0% | |
| TCTTGGGAAAAAGAAAGGTG+TGG | - | chr3.2:77314894-77314913 | None:intergenic | 40.0% | |
| TTATCCACCACAAACAACTG+AGG | + | chr3.2:77315471-77315490 | MS.gene48519:CDS | 40.0% | |
| TTATCCTCAGTTGTTTGTGG+TGG | - | chr3.2:77315478-77315497 | None:intergenic | 40.0% | |
| ! | CTCTCTAACATAGAAGGTGT+TGG | - | chr3.2:77315097-77315116 | None:intergenic | 40.0% |
| ! | CTTGTCCTTGATGGATCTTA+GGG | - | chr3.2:77315438-77315457 | None:intergenic | 40.0% |
| ! | GATTGAAGGTGATGATGATG+AGG | - | chr3.2:77315317-77315336 | None:intergenic | 40.0% |
| ! | TCTTGTCCTTGATGGATCTT+AGG | - | chr3.2:77315439-77315458 | None:intergenic | 40.0% |
| ! | TTTTGTGCTGTAGCAAGATC+AGG | - | chr3.2:77315388-77315407 | None:intergenic | 40.0% |
| !! | AAAAGTACCTTGGTTGTGAG+AGG | - | chr3.2:77315207-77315226 | None:intergenic | 40.0% |
| !! | TGTAGAAGGTATTGGACTGA+AGG | + | chr3.2:77315235-77315254 | MS.gene48519:CDS | 40.0% |
| !! | TTGTTTGTGGTGGATAAGCT+AGG | - | chr3.2:77315468-77315487 | None:intergenic | 40.0% |
| !!! | GGTTTTGAGAAGCAGATTGA+GGG | - | chr3.2:77315417-77315436 | None:intergenic | 40.0% |
| ACTATAGCCTCTCACAACCA+AGG | + | chr3.2:77315197-77315216 | MS.gene48519:CDS | 45.0% | |
| AGAAATGTTCCTGTAGGTGG+TGG | + | chr3.2:77315268-77315287 | MS.gene48519:CDS | 45.0% | |
| GGGTTTGAGAATGGTTATGG+TGG | + | chr3.2:77315706-77315725 | MS.gene48519:intron | 45.0% | |
| TTTCTTGAACCACCACCTAC+AGG | - | chr3.2:77315280-77315299 | None:intergenic | 45.0% | |
| ! | AATGGTTATGGTGGCTTGCA+AGG | + | chr3.2:77315715-77315734 | MS.gene48519:intron | 45.0% |
| ! | ATGGTTATGGTGGCTTGCAA+GGG | + | chr3.2:77315716-77315735 | MS.gene48519:intron | 45.0% |
| !! | AGAAGGTATTGGACTGAAGG+TGG | + | chr3.2:77315238-77315257 | MS.gene48519:CDS | 45.0% |
| !!! | GGGTTTTGAGAAGCAGATTG+AGG | - | chr3.2:77315418-77315437 | None:intergenic | 45.0% |
| !!! | TATTATTTTTGAAAAATTTA+GGG | + | chr3.2:77315022-77315041 | MS.gene48519:intron | 5.0% |
| !!! | TTATTATTTTTGAAAAATTT+AGG | + | chr3.2:77315021-77315040 | MS.gene48519:intron | 5.0% |
| AATCAAGAGGGTTCTGCTGG+TGG | + | chr3.2:77315745-77315764 | MS.gene48519:intron | 50.0% | |
| ! | GAATGTTCGGTGGAGGATCA+TGG | + | chr3.2:77315917-77315936 | MS.gene48519:CDS | 50.0% |
| ! | TGGAATGGAATGTTCGGTGG+AGG | + | chr3.2:77315910-77315929 | MS.gene48519:CDS | 50.0% |
| CAAGAGGGTTCTGCTGGTGG+TGG | + | chr3.2:77315748-77315767 | MS.gene48519:intron | 60.0% | |
| GGACACAGCTCAGTGGGCAC+AGG | + | chr3.2:77314604-77314623 | MS.gene48519:CDS | 65.0% | |
| !! | GAGGGTTCTGCTGGTGGTGG+TGG | + | chr3.2:77315751-77315770 | MS.gene48519:intron | 65.0% |
| !! | GGTTCTGCTGGTGGTGGTGG+TGG | + | chr3.2:77315754-77315773 | MS.gene48519:intron | 65.0% |
| !! | GTGGTGGTGGTGGTGGTGCA+AGG | + | chr3.2:77315770-77315789 | MS.gene48519:intron | 65.0% |
| !! | TCTGCTGGTGGTGGTGGTGG+TGG | + | chr3.2:77315757-77315776 | MS.gene48519:intron | 65.0% |
| !! | GCTGGTGGTGGTGGTGGTGG+TGG | + | chr3.2:77315760-77315779 | MS.gene48519:intron | 70.0% |
| !! | GGTGGTGGTGGTGGTGGTGG+TGG | + | chr3.2:77315763-77315782 | MS.gene48519:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77314602 | 77315942 | 77314602 | ID=MS.gene48519 |
| chr3.2 | mRNA | 77314602 | 77315942 | 77314602 | ID=MS.gene48519.t1;Parent=MS.gene48519 |
| chr3.2 | exon | 77314602 | 77314625 | 77314602 | ID=MS.gene48519.t1.exon1;Parent=MS.gene48519.t1 |
| chr3.2 | CDS | 77314602 | 77314625 | 77314602 | ID=cds.MS.gene48519.t1;Parent=MS.gene48519.t1 |
| chr3.2 | exon | 77315043 | 77315598 | 77315043 | ID=MS.gene48519.t1.exon2;Parent=MS.gene48519.t1 |
| chr3.2 | CDS | 77315043 | 77315598 | 77315043 | ID=cds.MS.gene48519.t1;Parent=MS.gene48519.t1 |
| chr3.2 | exon | 77315812 | 77315942 | 77315812 | ID=MS.gene48519.t1.exon3;Parent=MS.gene48519.t1 |
| chr3.2 | CDS | 77315812 | 77315942 | 77315812 | ID=cds.MS.gene48519.t1;Parent=MS.gene48519.t1 |
| Gene Sequence |
| Protein sequence |
