Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49633.t1 | XP_003613502.1 | 90.4 | 469 | 44 | 1 | 1 | 469 | 1 | 468 | 1.40E-245 | 858.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49633.t1 | A3KPN8 | 26.9 | 342 | 229 | 10 | 116 | 446 | 133 | 464 | 1.5e-19 | 99.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49633.t1 | G7K8A8 | 90.4 | 469 | 44 | 1 | 1 | 469 | 1 | 468 | 9.7e-246 | 858.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene49633 | 0.809709 | 1.65E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene49633 | 0.806086 | 9.76E-50 | -1.69E-46 |
| MS.gene049190 | MS.gene49633 | 0.825952 | 3.54E-54 | -1.69E-46 |
| MS.gene049254 | MS.gene49633 | 0.828649 | 8.00E-55 | -1.69E-46 |
| MS.gene049404 | MS.gene49633 | 0.829649 | 4.57E-55 | -1.69E-46 |
| MS.gene049435 | MS.gene49633 | 0.805091 | 1.58E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene49633 | 0.818166 | 2.26E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene49633 | 0.812487 | 4.14E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene49633 | 0.844818 | 5.97E-59 | -1.69E-46 |
| MS.gene050561 | MS.gene49633 | 0.840398 | 8.91E-58 | -1.69E-46 |
| MS.gene050562 | MS.gene49633 | 0.833322 | 5.70E-56 | -1.69E-46 |
| MS.gene051198 | MS.gene49633 | 0.818164 | 2.26E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene49633 | 0.873352 | 1.57E-67 | -1.69E-46 |
| MS.gene05157 | MS.gene49633 | 0.814953 | 1.18E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene49633 | 0.808738 | 2.67E-50 | -1.69E-46 |
| MS.gene051720 | MS.gene49633 | 0.820284 | 7.44E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene49633 | 0.852769 | 3.71E-61 | -1.69E-46 |
| MS.gene051859 | MS.gene49633 | 0.84178 | 3.86E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene49633 | 0.804754 | 1.86E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene49633 | 0.802728 | 4.89E-49 | -1.69E-46 |
| MS.gene052239 | MS.gene49633 | -0.831014 | 2.12E-55 | -1.69E-46 |
| MS.gene052516 | MS.gene49633 | 0.809513 | 1.82E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene49633 | 0.822429 | 2.38E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene49633 | 0.819446 | 1.16E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene49633 | 0.800359 | 1.50E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene49633 | 0.846264 | 2.42E-59 | -1.69E-46 |
| MS.gene053195 | MS.gene49633 | 0.811112 | 8.24E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene49633 | 0.869241 | 3.59E-66 | -1.69E-46 |
| MS.gene053542 | MS.gene49633 | 0.808697 | 2.73E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene49633 | 0.814828 | 1.26E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene49633 | 0.857017 | 2.17E-62 | -1.69E-46 |
| MS.gene053931 | MS.gene49633 | 0.849088 | 4.05E-60 | -1.69E-46 |
| MS.gene053966 | MS.gene49633 | 0.801103 | 1.05E-48 | -1.69E-46 |
| MS.gene053998 | MS.gene49633 | 0.821137 | 4.74E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene49633 | 0.84482 | 5.97E-59 | -1.69E-46 |
| MS.gene054775 | MS.gene49633 | 0.822687 | 2.07E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene49633 | 0.816133 | 6.47E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene49633 | 0.803215 | 3.88E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene49633 | 0.83768 | 4.50E-57 | -1.69E-46 |
| MS.gene055586 | MS.gene49633 | 0.810695 | 1.01E-50 | -1.69E-46 |
| MS.gene055694 | MS.gene49633 | 0.815077 | 1.11E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene49633 | 0.810364 | 1.20E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene49633 | 0.821097 | 4.84E-53 | -1.69E-46 |
| MS.gene056162 | MS.gene49633 | 0.801686 | 8.01E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene49633 | 0.822843 | 1.91E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene49633 | 0.808272 | 3.36E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene49633 | 0.802462 | 5.55E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene49633 | 0.802042 | 6.77E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene49633 | 0.847794 | 9.23E-60 | -1.69E-46 |
| MS.gene05690 | MS.gene49633 | 0.806488 | 8.03E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene49633 | 0.834806 | 2.42E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene49633 | 0.807521 | 4.85E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene49633 | 0.829198 | 5.89E-55 | -1.69E-46 |
| MS.gene057598 | MS.gene49633 | 0.828917 | 6.89E-55 | -1.69E-46 |
| MS.gene057693 | MS.gene49633 | 0.835722 | 1.42E-56 | -1.69E-46 |
| MS.gene057915 | MS.gene49633 | 0.825834 | 3.78E-54 | -1.69E-46 |
| MS.gene058009 | MS.gene49633 | 0.814248 | 1.70E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene49633 | 0.817254 | 3.63E-52 | -1.69E-46 |
| MS.gene05847 | MS.gene49633 | 0.822052 | 2.91E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene49633 | 0.830792 | 2.41E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene49633 | 0.842522 | 2.46E-58 | -1.69E-46 |
| MS.gene059625 | MS.gene49633 | 0.841265 | 5.28E-58 | -1.69E-46 |
| MS.gene05978 | MS.gene49633 | 0.811426 | 7.04E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene49633 | 0.803881 | 2.82E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene49633 | 0.825042 | 5.82E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene49633 | 0.831975 | 1.23E-55 | -1.69E-46 |
| MS.gene060918 | MS.gene49633 | 0.802593 | 5.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49633.t1 | MTR_5g037400 | 90.405 | 469 | 44 | 1 | 1 | 469 | 1 | 468 | 0.0 | 882 |
| MS.gene49633.t1 | MTR_5g037400 | 84.009 | 469 | 41 | 2 | 1 | 469 | 1 | 435 | 0.0 | 804 |
| MS.gene49633.t1 | MTR_5g037400 | 90.026 | 391 | 39 | 0 | 1 | 391 | 1 | 391 | 0.0 | 738 |
| MS.gene49633.t1 | MTR_5g037420 | 88.514 | 148 | 17 | 0 | 163 | 310 | 1 | 148 | 4.19e-94 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49633.t1 | AT1G27150 | 61.538 | 468 | 180 | 0 | 1 | 468 | 1 | 468 | 0.0 | 605 |
| MS.gene49633.t1 | AT1G27110 | 57.569 | 469 | 198 | 1 | 1 | 468 | 12 | 480 | 0.0 | 538 |
| MS.gene49633.t1 | AT1G27110 | 58.081 | 396 | 165 | 1 | 1 | 395 | 12 | 407 | 7.79e-158 | 455 |
| MS.gene49633.t1 | AT1G27110 | 57.650 | 366 | 154 | 1 | 105 | 469 | 2 | 367 | 5.84e-149 | 429 |
| MS.gene49633.t1 | AT1G27110 | 58.562 | 292 | 120 | 1 | 105 | 395 | 2 | 293 | 3.02e-117 | 347 |
Find 82 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCATTGCCATCAAAATT+TGG | 0.146676 | 5.1:-28223772 | None:intergenic |
| TTCTCTATCCCTTGTTAATC+AGG | 0.241617 | 5.1:+28221949 | MS.gene49633:CDS |
| AAAGCAGAAGATCTTCTTAC+AGG | 0.262828 | 5.1:+28223018 | MS.gene49633:CDS |
| GTTGATTTCAAATCCTCTTT+TGG | 0.280915 | 5.1:-28222199 | None:intergenic |
| TAGAGAGAGATGTGTGATTA+TGG | 0.283212 | 5.1:+28220113 | MS.gene49633:CDS |
| CATGGTTATGTGAAGGTAAT+TGG | 0.330303 | 5.1:+28224074 | MS.gene49633:intron |
| TTGATGTATTCAACGAAGTT+TGG | 0.334666 | 5.1:+28224114 | MS.gene49633:CDS |
| AAAGCAGTTCCCAAGAGATT+TGG | 0.342502 | 5.1:+28221874 | MS.gene49633:CDS |
| GAAGGAGAAAATTACATATA+TGG | 0.350885 | 5.1:+28222120 | MS.gene49633:CDS |
| GAGACGGCACAGCTTTCTTA+TGG | 0.361307 | 5.1:+28224283 | MS.gene49633:CDS |
| AGCTTTCTTATGGCGTTTGC+TGG | 0.374537 | 5.1:+28224293 | MS.gene49633:CDS |
| AATCCAATGTTTAGGCAAAC+TGG | 0.374954 | 5.1:+28222932 | MS.gene49633:intron |
| AAACAACAAATAATGCAAAA+AGG | 0.378736 | 5.1:+28223153 | MS.gene49633:CDS |
| AGGTATATGACAATTATATA+TGG | 0.380439 | 5.1:+28222590 | MS.gene49633:CDS |
| TGTAGCACTTTGTTACTTAG+AGG | 0.383596 | 5.1:+28222540 | MS.gene49633:CDS |
| GCAGAAGCACTTTATGCATA+TGG | 0.394080 | 5.1:+28223712 | MS.gene49633:CDS |
| TCAATGAAGGTTCTTAGTTA+TGG | 0.408223 | 5.1:+28220090 | MS.gene49633:intron |
| TTTAGAGAAGCCAAATCTCT+TGG | 0.410532 | 5.1:-28221884 | None:intergenic |
| TTGTGAAACCTGTTGGTAAT+AGG | 0.428649 | 5.1:-28219972 | None:intergenic |
| TTTGCAATTGCAGCAGCGTC+TGG | 0.428835 | 5.1:-28224598 | None:intergenic |
| TTCTGCTTTAGAAATTTGTC+CGG | 0.442708 | 5.1:-28223004 | None:intergenic |
| TATCTTATTGTAGGATTTCG+AGG | 0.444796 | 5.1:+28223118 | MS.gene49633:intron |
| TTAGAGAAGCCAAATCTCTT+GGG | 0.456999 | 5.1:-28221883 | None:intergenic |
| TTCTTACAGGCTTAAAAGAA+AGG | 0.462809 | 5.1:+28223031 | MS.gene49633:CDS |
| ACAAATCCTGTGTTTCTACA+TGG | 0.463773 | 5.1:+28221913 | MS.gene49633:CDS |
| GTTAATAAAATGAGCTGCTA+AGG | 0.468183 | 5.1:-28220175 | None:intergenic |
| CATCAACTCCTATTACCAAC+AGG | 0.471508 | 5.1:+28219964 | MS.gene49633:CDS |
| ACAAGGGATAGAGAAAGATC+AGG | 0.475534 | 5.1:-28221941 | None:intergenic |
| TTCCGTTATTGGAGCTTGGA+CGG | 0.479517 | 5.1:+28222154 | MS.gene49633:CDS |
| AAACATGGACTGGAGTTACT+TGG | 0.480215 | 5.1:+28223748 | MS.gene49633:CDS |
| TTGTCAGGTTGACACACAAT+TGG | 0.480422 | 5.1:+28222512 | MS.gene49633:intron |
| ATAGGTTTACTTAAATGCTA+TGG | 0.481913 | 5.1:+28222734 | MS.gene49633:intron |
| TGTATTGACAGTGTGGGCTT+TGG | 0.484218 | 5.1:+28222975 | MS.gene49633:CDS |
| GCTGAGGAAGCTGCCAAAAG+AGG | 0.492957 | 5.1:+28222186 | MS.gene49633:CDS |
| AGCTGTTGAGTTTCATTACA+AGG | 0.494876 | 5.1:+28221247 | MS.gene49633:CDS |
| ACTTAACAGCTTCTCTAAAA+CGG | 0.499394 | 5.1:-28222375 | None:intergenic |
| CATGTTGTGACCATCCATCT+TGG | 0.500368 | 5.1:-28222224 | None:intergenic |
| ATCCGTCCAAGCTCCAATAA+CGG | 0.519593 | 5.1:-28222156 | None:intergenic |
| TTTGAAATCAACAACCAAGA+TGG | 0.521124 | 5.1:+28222210 | MS.gene49633:CDS |
| GAAAACTAGTTTCTCGTACA+AGG | 0.523903 | 5.1:-28221180 | None:intergenic |
| ACCTCGAGCACGCTTTGCGT+TGG | 0.527580 | 5.1:-28222571 | None:intergenic |
| GTTGTGCGTGCGTGATGAGT+TGG | 0.533789 | 5.1:+28222770 | MS.gene49633:CDS |
| GCACTTTATGCATATGGAAG+AGG | 0.535799 | 5.1:+28223718 | MS.gene49633:CDS |
| TCAGGTTGACACACAATTGG+TGG | 0.537033 | 5.1:+28222515 | MS.gene49633:intron |
| GAACAGCGGAGACGCGATGA+AGG | 0.539744 | 5.1:+28224151 | MS.gene49633:CDS |
| GGAGTGAATAACAATATGGA+AGG | 0.547753 | 5.1:+28219878 | None:intergenic |
| AGGTAACGACAAACATGGAC+TGG | 0.552737 | 5.1:+28223738 | MS.gene49633:CDS |
| GTGTGGGCTTTGGCAAAGAC+CGG | 0.553062 | 5.1:+28222985 | MS.gene49633:CDS |
| TGAATAACAATATGGAAGGA+AGG | 0.553802 | 5.1:+28219882 | None:intergenic |
| TGCCATCAGTTATTTGATGT+CGG | 0.555331 | 5.1:+28221205 | MS.gene49633:CDS |
| TGTATCATAACTTACTTGAT+CGG | 0.558733 | 5.1:-28222835 | None:intergenic |
| GTAGCACTTTGTTACTTAGA+GGG | 0.570256 | 5.1:+28222541 | MS.gene49633:CDS |
| AACTGATGCCGCAGTTCCTG+AGG | 0.571703 | 5.1:+28222627 | MS.gene49633:CDS |
| CAAGGGATAGAGAAAGATCA+GGG | 0.572407 | 5.1:-28221940 | None:intergenic |
| ATGCTATGGCTCTGCTTCTG+CGG | 0.576856 | 5.1:+28222748 | MS.gene49633:CDS |
| TTCCGACATCAAATAACTGA+TGG | 0.581209 | 5.1:-28221207 | None:intergenic |
| AGGCAAACTGGTATTTAGAG+TGG | 0.584151 | 5.1:+28222944 | MS.gene49633:intron |
| TGAAAGAATGTTCTTCGTCG+TGG | 0.586473 | 5.1:+28222401 | MS.gene49633:CDS |
| AAATCAACAACCAAGATGGA+TGG | 0.588332 | 5.1:+28222214 | MS.gene49633:CDS |
| CAAATCCTGTGTTTCTACAT+GGG | 0.594367 | 5.1:+28221914 | MS.gene49633:CDS |
| CCCACACTGTCAATACATCA+AGG | 0.606762 | 5.1:-28222969 | None:intergenic |
| ATATGACAATTATATATGGA+AGG | 0.612918 | 5.1:+28222594 | MS.gene49633:CDS |
| CTTAGCAGCATTAAGCAAAG+AGG | 0.618782 | 5.1:-28220220 | None:intergenic |
| GAAAAGGAACCTGATTAACA+AGG | 0.618904 | 5.1:-28221958 | None:intergenic |
| AAGCGAATCAAGAAGAGAGA+CGG | 0.620890 | 5.1:+28224267 | MS.gene49633:CDS |
| AACAGCGGAGACGCGATGAA+GGG | 0.622093 | 5.1:+28224152 | MS.gene49633:CDS |
| TGGACGGATGAGAGAAGCTG+AGG | 0.624501 | 5.1:+28222170 | MS.gene49633:CDS |
| ACCTTGATGTATTGACAGTG+TGG | 0.628634 | 5.1:+28222968 | MS.gene49633:CDS |
| CATAACTTACTTGATCGGCT+AGG | 0.630902 | 5.1:-28222830 | None:intergenic |
| GGCAACCCATGTAGAAACAC+AGG | 0.631216 | 5.1:-28221919 | None:intergenic |
| GGAAGAGGTAACGACAAACA+TGG | 0.632216 | 5.1:+28223733 | MS.gene49633:CDS |
| TCCAACGCAAAGCGTGCTCG+AGG | 0.636232 | 5.1:+28222570 | MS.gene49633:CDS |
| AGGATCAAATTAAACGACTG+TGG | 0.636904 | 5.1:+28219902 | MS.gene49633:CDS |
| AGAGATTCCACTTACAAGGT+GGG | 0.637210 | 5.1:-28220244 | None:intergenic |
| GGCACTCATACTGAAGAACA+TGG | 0.646723 | 5.1:-28222354 | None:intergenic |
| ATCGTGCACCTCAGGAACTG+CGG | 0.648673 | 5.1:-28222635 | None:intergenic |
| AAAAGGAACCTGATTAACAA+GGG | 0.651342 | 5.1:-28221957 | None:intergenic |
| CCTTGATGTATTGACAGTGT+GGG | 0.661911 | 5.1:+28222969 | MS.gene49633:CDS |
| TACATCATGTTGCTGAACAG+CGG | 0.662080 | 5.1:+28224137 | MS.gene49633:CDS |
| ATTAAACGACTGTGGATACG+AGG | 0.667629 | 5.1:+28219910 | MS.gene49633:CDS |
| ATGTGTGATTATGGAAGCAG+TGG | 0.671233 | 5.1:+28220122 | MS.gene49633:CDS |
| CAGGTTCTACCGCAAAACGA+AGG | 0.698632 | 5.1:+28222102 | MS.gene49633:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTGATATGATA+AGG | - | chr5.1:28220007-28220026 | None:intergenic | 10.0% |
| !! | AAAAAAAATTGATATGATAA+GGG | - | chr5.1:28220006-28220025 | None:intergenic | 10.0% |
| !!! | TATTAATTTTTCCTATTTAA+AGG | + | chr5.1:28222030-28222049 | MS.gene49633:intron | 10.0% |
| !!! | TATTTACATATTATTTTAAC+AGG | + | chr5.1:28221654-28221673 | MS.gene49633:intron | 10.0% |
| !! | AGGAAATTATTAATAATGAA+AGG | - | chr5.1:28224427-28224446 | None:intergenic | 15.0% |
| !! | TCAATGTATTTGTAAAAAAT+TGG | + | chr5.1:28222254-28222273 | MS.gene49633:intron | 15.0% |
| !!! | TATGTTATTTCATATTTACA+AGG | + | chr5.1:28220795-28220814 | MS.gene49633:intron | 15.0% |
| !!! | TATTTTTTTTTTACCAAACA+GGG | + | chr5.1:28220869-28220888 | MS.gene49633:intron | 15.0% |
| !!! | TTTTAAATTACTATAACTAC+AGG | - | chr5.1:28220407-28220426 | None:intergenic | 15.0% |
| !! | AAACAACAAATAATGCAAAA+AGG | + | chr5.1:28223153-28223172 | MS.gene49633:CDS | 20.0% |
| !! | AAATGCAATTAAATGAATGA+TGG | - | chr5.1:28220920-28220939 | None:intergenic | 20.0% |
| !! | AACTTGATGGAAAATAAAAA+AGG | - | chr5.1:28220309-28220328 | None:intergenic | 20.0% |
| !! | AATAATAAACAGCAAGTATA+TGG | + | chr5.1:28221293-28221312 | MS.gene49633:intron | 20.0% |
| !! | ACTTGATGGAAAATAAAAAA+GGG | - | chr5.1:28220308-28220327 | None:intergenic | 20.0% |
| !! | AGGTATATGACAATTATATA+TGG | + | chr5.1:28222590-28222609 | MS.gene49633:CDS | 20.0% |
| !! | AGTAATGTTACTAAAAATGA+GGG | + | chr5.1:28223286-28223305 | MS.gene49633:intron | 20.0% |
| !! | ATAAAACTGTACCTTTAAAT+AGG | - | chr5.1:28222044-28222063 | None:intergenic | 20.0% |
| !! | ATAACATGTTATCTTATTGT+AGG | + | chr5.1:28223109-28223128 | MS.gene49633:intron | 20.0% |
| !! | ATATGACAATTATATATGGA+AGG | + | chr5.1:28222594-28222613 | MS.gene49633:CDS | 20.0% |
| !! | ATTATTGAATCATTTGATTC+TGG | + | chr5.1:28224329-28224348 | MS.gene49633:intron | 20.0% |
| !! | GTTTGGTAAAAAAAAAATAG+TGG | - | chr5.1:28220868-28220887 | None:intergenic | 20.0% |
| !! | TAATTTAAACTCTCAATTCT+TGG | + | chr5.1:28222906-28222925 | MS.gene49633:intron | 20.0% |
| !! | TAGTAATGTTACTAAAAATG+AGG | + | chr5.1:28223285-28223304 | MS.gene49633:intron | 20.0% |
| !! | TGGAAAAACATGTTAATTAA+GGG | - | chr5.1:28223541-28223560 | None:intergenic | 20.0% |
| !! | TTATTGAATCATTTGATTCT+GGG | + | chr5.1:28224330-28224349 | MS.gene49633:intron | 20.0% |
| !! | TTCCAAATAAATAATAAGTG+CGG | + | chr5.1:28221046-28221065 | MS.gene49633:intron | 20.0% |
| !! | TTGGAAAAACATGTTAATTA+AGG | - | chr5.1:28223542-28223561 | None:intergenic | 20.0% |
| !! | TTGGAAAATAAATTTAGTGT+TGG | + | chr5.1:28221631-28221650 | MS.gene49633:intron | 20.0% |
| !! | TTTAGTAACATTACTAGTTA+AGG | - | chr5.1:28223281-28223300 | None:intergenic | 20.0% |
| !!! | AAAAAAAAATAGTGGATAGT+TGG | - | chr5.1:28220860-28220879 | None:intergenic | 20.0% |
| !!! | AAAATGAGTGTTTACTTTTA+TGG | + | chr5.1:28224492-28224511 | MS.gene49633:intron | 20.0% |
| !!! | ATAAAAGTAAACACTCATTT+TGG | - | chr5.1:28224493-28224512 | None:intergenic | 20.0% |
| !!! | ATAATAACTGCTGAATATTT+TGG | + | chr5.1:28221531-28221550 | MS.gene49633:intron | 20.0% |
| !!! | CTATTTTTTTTTTACCAAAC+AGG | + | chr5.1:28220868-28220887 | MS.gene49633:intron | 20.0% |
| !!! | CTTCATTATTTTTTACTTTC+AGG | + | chr5.1:28224549-28224568 | MS.gene49633:intron | 20.0% |
| !!! | GACTATATTTTGATTTTTCT+TGG | + | chr5.1:28223649-28223668 | MS.gene49633:intron | 20.0% |
| !!! | TTGTTATTATATGTGTTGAA+TGG | + | chr5.1:28221690-28221709 | MS.gene49633:intron | 20.0% |
| !!! | TTTTATTTTCCATCAAGTTA+GGG | + | chr5.1:28220310-28220329 | MS.gene49633:intron | 20.0% |
| !!! | TTTTGGAATTAATAATGTCA+TGG | + | chr5.1:28224056-28224075 | MS.gene49633:intron | 20.0% |
| !!! | TTTTTATTTTCCATCAAGTT+AGG | + | chr5.1:28220309-28220328 | MS.gene49633:intron | 20.0% |
| ! | AAAAATAATAAGACCCTGTT+TGG | - | chr5.1:28220885-28220904 | None:intergenic | 25.0% |
| ! | AAAACCATGAATAACAAACT+TGG | - | chr5.1:28221455-28221474 | None:intergenic | 25.0% |
| ! | AAACAAAGGAAATGTTCATT+TGG | + | chr5.1:28222873-28222892 | MS.gene49633:intron | 25.0% |
| ! | AAATCAAAATATAGTCCACT+TGG | - | chr5.1:28223645-28223664 | None:intergenic | 25.0% |
| ! | AAATTGTTTGTGATAGCTTA+TGG | + | chr5.1:28223360-28223379 | MS.gene49633:intron | 25.0% |
| ! | AACCATAAATAAATCCCAAA+AGG | + | chr5.1:28221598-28221617 | MS.gene49633:intron | 25.0% |
| ! | AATTGCAAATGAAAAAGCTA+AGG | + | chr5.1:28224612-28224631 | MS.gene49633:CDS | 25.0% |
| ! | AATTGCAATTAAGAAAGAGT+AGG | + | chr5.1:28221015-28221034 | MS.gene49633:intron | 25.0% |
| ! | AGAGAAATCTATGAACAAAA+AGG | + | chr5.1:28221338-28221357 | MS.gene49633:intron | 25.0% |
| ! | AGTGCATGATATATAAACAA+AGG | + | chr5.1:28222859-28222878 | MS.gene49633:intron | 25.0% |
| ! | ATAGGTTTACTTAAATGCTA+TGG | + | chr5.1:28222734-28222753 | MS.gene49633:intron | 25.0% |
| ! | ATTGCAATTAAGAAAGAGTA+GGG | + | chr5.1:28221016-28221035 | MS.gene49633:intron | 25.0% |
| ! | GAAATGTTGTGTAATTGAAA+AGG | - | chr5.1:28221977-28221996 | None:intergenic | 25.0% |
| ! | GAAGGAGAAAATTACATATA+TGG | + | chr5.1:28222120-28222139 | MS.gene49633:CDS | 25.0% |
| ! | GTAATGTTACTAAAAATGAG+GGG | + | chr5.1:28223287-28223306 | MS.gene49633:intron | 25.0% |
| ! | TATAGAGTTATCAATTTGTC+AGG | + | chr5.1:28222497-28222516 | MS.gene49633:intron | 25.0% |
| ! | TCCAAATAAATAATAAGTGC+GGG | + | chr5.1:28221047-28221066 | MS.gene49633:intron | 25.0% |
| ! | TGTATCATAACTTACTTGAT+CGG | - | chr5.1:28222838-28222857 | None:intergenic | 25.0% |
| ! | TTCTGTAACAATATTAGTCA+AGG | - | chr5.1:28223599-28223618 | None:intergenic | 25.0% |
| !! | AGTAAACCTATTTTCAAATG+AGG | - | chr5.1:28222725-28222744 | None:intergenic | 25.0% |
| !! | ATTAACATGTTTTTCCAAAC+AGG | + | chr5.1:28223544-28223563 | MS.gene49633:intron | 25.0% |
| !! | TTAACATGTTTTTCCAAACA+GGG | + | chr5.1:28223545-28223564 | MS.gene49633:intron | 25.0% |
| !!! | CTCATTTTGGTTCTTAAAAA+TGG | - | chr5.1:28224480-28224499 | None:intergenic | 25.0% |
| !!! | GATAAGTGTTTTGATATTAC+AGG | + | chr5.1:28221148-28221167 | MS.gene49633:intron | 25.0% |
| !!! | TGTAGATTTTTTTGTGCTTT+TGG | + | chr5.1:28220954-28220973 | MS.gene49633:intron | 25.0% |
| !!! | TTTGATTTTGCTGTATGATA+CGG | + | chr5.1:28224394-28224413 | MS.gene49633:intron | 25.0% |
| AAAAGGAACCTGATTAACAA+GGG | - | chr5.1:28221960-28221979 | None:intergenic | 30.0% | |
| AAAGAGTTTGAGTAGAAACA+TGG | - | chr5.1:28221820-28221839 | None:intergenic | 30.0% | |
| AAAGGAAATGTTCATTTGGA+AGG | + | chr5.1:28222877-28222896 | MS.gene49633:intron | 30.0% | |
| AATAATGCAAAAAGGAATGC+TGG | + | chr5.1:28223161-28223180 | MS.gene49633:CDS | 30.0% | |
| AATTGAAGATGACTGATGAT+GGG | - | chr5.1:28224211-28224230 | None:intergenic | 30.0% | |
| ATAATGTCATGGTTATGTGA+AGG | + | chr5.1:28224067-28224086 | MS.gene49633:intron | 30.0% | |
| ATCTAATAAGCTATAAGCCA+CGG | - | chr5.1:28220638-28220657 | None:intergenic | 30.0% | |
| CAATCATTGCCATCAAAATT+TGG | - | chr5.1:28223775-28223794 | None:intergenic | 30.0% | |
| CCAAATAAATAATAAGTGCG+GGG | + | chr5.1:28221048-28221067 | MS.gene49633:intron | 30.0% | |
| CTTGGATTAATCCAATGTTT+AGG | + | chr5.1:28222924-28222943 | MS.gene49633:intron | 30.0% | |
| GATGGTTCAGATTTCAAATT+TGG | - | chr5.1:28223935-28223954 | None:intergenic | 30.0% | |
| GCAGTTTATTCATTTGAAGA+TGG | + | chr5.1:28222448-28222467 | MS.gene49633:intron | 30.0% | |
| GCTAGGTTAAAATGAAGAAA+TGG | - | chr5.1:28223690-28223709 | None:intergenic | 30.0% | |
| GTAGTGTTTGGTAAAATTAG+CGG | - | chr5.1:28220829-28220848 | None:intergenic | 30.0% | |
| GTATCATACAGCAAAATCAA+AGG | - | chr5.1:28224395-28224414 | None:intergenic | 30.0% | |
| GTTAATAAAATGAGCTGCTA+AGG | - | chr5.1:28220178-28220197 | None:intergenic | 30.0% | |
| TAAGGAAATAAGCTGAAAAC+AGG | - | chr5.1:28223416-28223435 | None:intergenic | 30.0% | |
| TAATTGAAGATGACTGATGA+TGG | - | chr5.1:28224212-28224231 | None:intergenic | 30.0% | |
| TATCTTATTGTAGGATTTCG+AGG | + | chr5.1:28223118-28223137 | MS.gene49633:intron | 30.0% | |
| TCAATGAAGGTTCTTAGTTA+TGG | + | chr5.1:28220090-28220109 | MS.gene49633:intron | 30.0% | |
| TTCTGACCTCATTTGAAAAT+AGG | + | chr5.1:28222716-28222735 | MS.gene49633:intron | 30.0% | |
| TTCTTACAGGCTTAAAAGAA+AGG | + | chr5.1:28223031-28223050 | MS.gene49633:CDS | 30.0% | |
| TTGATGTATTCAACGAAGTT+TGG | + | chr5.1:28224114-28224133 | MS.gene49633:CDS | 30.0% | |
| ! | ACTTAACAGCTTCTCTAAAA+CGG | - | chr5.1:28222378-28222397 | None:intergenic | 30.0% |
| ! | CTTTTCGATGTTTTCAATGA+AGG | + | chr5.1:28220077-28220096 | MS.gene49633:intron | 30.0% |
| ! | TAATTTTCTCCTTCGTTTTG+CGG | - | chr5.1:28222114-28222133 | None:intergenic | 30.0% |
| ! | TAGCTATTCTAGAGAACTTA+AGG | - | chr5.1:28223434-28223453 | None:intergenic | 30.0% |
| ! | TTACTTGGTCCAAATTTTGA+TGG | + | chr5.1:28223763-28223782 | MS.gene49633:CDS | 30.0% |
| ! | TTTGAAATCAACAACCAAGA+TGG | + | chr5.1:28222210-28222229 | MS.gene49633:CDS | 30.0% |
| ! | TTTTCATCTAATCACTGAAG+TGG | - | chr5.1:28223200-28223219 | None:intergenic | 30.0% |
| !! | AAAGTGTTTTAGATGAAGTG+CGG | + | chr5.1:28223074-28223093 | MS.gene49633:intron | 30.0% |
| !! | ATTCGCAAAATTGGTGATTT+TGG | - | chr5.1:28220992-28221011 | None:intergenic | 30.0% |
| !! | GTTGATTTCAAATCCTCTTT+TGG | - | chr5.1:28222202-28222221 | None:intergenic | 30.0% |
| !! | TAATAATTTCCTTGCTGTTG+AGG | + | chr5.1:28224435-28224454 | MS.gene49633:intron | 30.0% |
| !! | TGGTGATTTTGGTAAACTAA+GGG | - | chr5.1:28220981-28221000 | None:intergenic | 30.0% |
| !! | TTCTGCTTTAGAAATTTGTC+CGG | - | chr5.1:28223007-28223026 | None:intergenic | 30.0% |
| !! | TTGGTGATTTTGGTAAACTA+AGG | - | chr5.1:28220982-28221001 | None:intergenic | 30.0% |
| !!! | ATTTTTTACTTTCAGGAGAG+AGG | + | chr5.1:28224556-28224575 | MS.gene49633:intron | 30.0% |
| !!! | GCAATTTTGATTCGCAAAAT+TGG | - | chr5.1:28221001-28221020 | None:intergenic | 30.0% |
| !!! | TCTTCACTTCTTTCGTTTTT+TGG | + | chr5.1:28224039-28224058 | MS.gene49633:intron | 30.0% |
| !!! | TGCCTTTTGGGATTTATTTA+TGG | - | chr5.1:28221603-28221622 | None:intergenic | 30.0% |
| AAAAAGAGACCCTAACTTGA+TGG | - | chr5.1:28220322-28220341 | None:intergenic | 35.0% | |
| AAAGCAGAAGATCTTCTTAC+AGG | + | chr5.1:28223018-28223037 | MS.gene49633:CDS | 35.0% | |
| AAATCAACAACCAAGATGGA+TGG | + | chr5.1:28222214-28222233 | MS.gene49633:CDS | 35.0% | |
| AAATCGCTCACTAATCGATT+AGG | - | chr5.1:28223240-28223259 | None:intergenic | 35.0% | |
| AACCCAAAACTACATGCTTT+AGG | + | chr5.1:28221426-28221445 | MS.gene49633:intron | 35.0% | |
| AAGAAGTGAAGACACAATAC+TGG | - | chr5.1:28224031-28224050 | None:intergenic | 35.0% | |
| AATCCAATGTTTAGGCAAAC+TGG | + | chr5.1:28222932-28222951 | MS.gene49633:intron | 35.0% | |
| AATGAGAGATTCCACTTACA+AGG | - | chr5.1:28220251-28220270 | None:intergenic | 35.0% | |
| AGCTGTTGAGTTTCATTACA+AGG | + | chr5.1:28221247-28221266 | MS.gene49633:CDS | 35.0% | |
| AGGATCAAATTAAACGACTG+TGG | + | chr5.1:28219902-28219921 | MS.gene49633:CDS | 35.0% | |
| ATACCAGTTTGCCTAAACAT+TGG | - | chr5.1:28222938-28222957 | None:intergenic | 35.0% | |
| CAATTAAGAAAGAGTAGGGA+CGG | + | chr5.1:28221020-28221039 | MS.gene49633:intron | 35.0% | |
| CATGGTTATGTGAAGGTAAT+TGG | + | chr5.1:28224074-28224093 | MS.gene49633:intron | 35.0% | |
| CCCCGCACTTATTATTTATT+TGG | - | chr5.1:28221051-28221070 | None:intergenic | 35.0% | |
| CTAATCGATTAGGCATACTA+CGG | - | chr5.1:28223230-28223249 | None:intergenic | 35.0% | |
| CTGTGAAACTTAGAAGGATA+AGG | - | chr5.1:28222085-28222104 | None:intergenic | 35.0% | |
| CTTATCCTTCTAAGTTTCAC+AGG | + | chr5.1:28222083-28222102 | MS.gene49633:intron | 35.0% | |
| GAAAAGGAACCTGATTAACA+AGG | - | chr5.1:28221961-28221980 | None:intergenic | 35.0% | |
| GAGAGAGAAAAAAAACAGTG+CGG | - | chr5.1:28221767-28221786 | None:intergenic | 35.0% | |
| GAGGTCAGAATTCATAACAA+AGG | - | chr5.1:28222706-28222725 | None:intergenic | 35.0% | |
| GATCTCAAGATTCATGTGTA+TGG | - | chr5.1:28221405-28221424 | None:intergenic | 35.0% | |
| TAGAACCTGTGAAACTTAGA+AGG | - | chr5.1:28222091-28222110 | None:intergenic | 35.0% | |
| TAGAGAGAGATGTGTGATTA+TGG | + | chr5.1:28220113-28220132 | MS.gene49633:CDS | 35.0% | |
| TCATATGTTGTGAAACCTGT+TGG | - | chr5.1:28219982-28220001 | None:intergenic | 35.0% | |
| TCTAATAAGCTATAAGCCAC+GGG | - | chr5.1:28220637-28220656 | None:intergenic | 35.0% | |
| TGCCATCAGTTATTTGATGT+CGG | + | chr5.1:28221205-28221224 | MS.gene49633:CDS | 35.0% | |
| TGGTTCTTAAAAATGGCAGA+CGG | - | chr5.1:28224473-28224492 | None:intergenic | 35.0% | |
| TTACAGGCTTAAAAGAAAGG+TGG | + | chr5.1:28223034-28223053 | MS.gene49633:intron | 35.0% | |
| TTAGAGAAGCCAAATCTCTT+GGG | - | chr5.1:28221886-28221905 | None:intergenic | 35.0% | |
| TTCCGACATCAAATAACTGA+TGG | - | chr5.1:28221210-28221229 | None:intergenic | 35.0% | |
| TTCTCAATCACTTCAATTGC+TGG | - | chr5.1:28224249-28224268 | None:intergenic | 35.0% | |
| TTCTCTATCCCTTGTTAATC+AGG | + | chr5.1:28221949-28221968 | MS.gene49633:CDS | 35.0% | |
| TTGGTTGAATTCGTAGTGTT+TGG | - | chr5.1:28220841-28220860 | None:intergenic | 35.0% | |
| TTTAGAGAAGCCAAATCTCT+TGG | - | chr5.1:28221887-28221906 | None:intergenic | 35.0% | |
| ! | ACAAATCCTGTGTTTCTACA+TGG | + | chr5.1:28221913-28221932 | MS.gene49633:CDS | 35.0% |
| ! | AGCTTTGCTCTGGTTTAAAA+TGG | - | chr5.1:28220501-28220520 | None:intergenic | 35.0% |
| ! | ATGCCTAAAGCATGTAGTTT+TGG | - | chr5.1:28221432-28221451 | None:intergenic | 35.0% |
| ! | CAAATCCTGTGTTTCTACAT+GGG | + | chr5.1:28221914-28221933 | MS.gene49633:CDS | 35.0% |
| ! | CCAATAACATGTTGCCTTTT+GGG | - | chr5.1:28221615-28221634 | None:intergenic | 35.0% |
| ! | GAAAACTAGTTTCTCGTACA+AGG | - | chr5.1:28221183-28221202 | None:intergenic | 35.0% |
| ! | GTAGCACTTTGTTACTTAGA+GGG | + | chr5.1:28222541-28222560 | MS.gene49633:CDS | 35.0% |
| ! | TCCAATAACATGTTGCCTTT+TGG | - | chr5.1:28221616-28221635 | None:intergenic | 35.0% |
| ! | TGCCTAAAGCATGTAGTTTT+GGG | - | chr5.1:28221431-28221450 | None:intergenic | 35.0% |
| ! | TGTAGCACTTTGTTACTTAG+AGG | + | chr5.1:28222540-28222559 | MS.gene49633:CDS | 35.0% |
| !! | GCATCCAAGTTTGTTATTCA+TGG | + | chr5.1:28221448-28221467 | MS.gene49633:intron | 35.0% |
| !! | TTGTGAAACCTGTTGGTAAT+AGG | - | chr5.1:28219975-28219994 | None:intergenic | 35.0% |
| !! | TTTTGATGGCAATGATTGCA+AGG | + | chr5.1:28223777-28223796 | MS.gene49633:CDS | 35.0% |
| AAAACTCAGTATCCGTCACA+TGG | + | chr5.1:28220429-28220448 | MS.gene49633:intron | 40.0% | |
| AAAGCAGTTCCCAAGAGATT+TGG | + | chr5.1:28221874-28221893 | MS.gene49633:CDS | 40.0% | |
| AAGCGAATCAAGAAGAGAGA+CGG | + | chr5.1:28224267-28224286 | MS.gene49633:CDS | 40.0% | |
| ACAAGGGATAGAGAAAGATC+AGG | - | chr5.1:28221944-28221963 | None:intergenic | 40.0% | |
| ACTAATTGCTTCTCACACTC+AGG | - | chr5.1:28223571-28223590 | None:intergenic | 40.0% | |
| AGAGATTCCACTTACAAGGT+GGG | - | chr5.1:28220247-28220266 | None:intergenic | 40.0% | |
| AGGCAAACTGGTATTTAGAG+TGG | + | chr5.1:28222944-28222963 | MS.gene49633:intron | 40.0% | |
| ATCGTTGGATCTAGATAGGA+TGG | - | chr5.1:28223953-28223972 | None:intergenic | 40.0% | |
| ATGTGTGATTATGGAAGCAG+TGG | + | chr5.1:28220122-28220141 | MS.gene49633:CDS | 40.0% | |
| ATTAAACGACTGTGGATACG+AGG | + | chr5.1:28219910-28219929 | MS.gene49633:CDS | 40.0% | |
| ATTCCTCTGGGTACCAATTT+CGG | - | chr5.1:28220541-28220560 | None:intergenic | 40.0% | |
| CAAGGGATAGAGAAAGATCA+GGG | - | chr5.1:28221943-28221962 | None:intergenic | 40.0% | |
| CATAACTTACTTGATCGGCT+AGG | - | chr5.1:28222833-28222852 | None:intergenic | 40.0% | |
| CATCAACTCCTATTACCAAC+AGG | + | chr5.1:28219964-28219983 | MS.gene49633:CDS | 40.0% | |
| CCCAAAAGGCAACATGTTAT+TGG | + | chr5.1:28221612-28221631 | MS.gene49633:intron | 40.0% | |
| CTAAAAATGAGGGGTCTGTT+TGG | + | chr5.1:28223296-28223315 | MS.gene49633:intron | 40.0% | |
| CTCTCAGATTTGATTCCTCT+GGG | - | chr5.1:28220553-28220572 | None:intergenic | 40.0% | |
| CTTAGCAGCATTAAGCAAAG+AGG | - | chr5.1:28220223-28220242 | None:intergenic | 40.0% | |
| GACAATCGTTGGATCTAGAT+AGG | - | chr5.1:28223957-28223976 | None:intergenic | 40.0% | |
| GCACTTTATGCATATGGAAG+AGG | + | chr5.1:28223718-28223737 | MS.gene49633:CDS | 40.0% | |
| GCAGTGCTAAAAACAATTCC+TGG | + | chr5.1:28221486-28221505 | MS.gene49633:intron | 40.0% | |
| GTGAGTACAATGACAATCGT+TGG | - | chr5.1:28223968-28223987 | None:intergenic | 40.0% | |
| TACATCATGTTGCTGAACAG+CGG | + | chr5.1:28224137-28224156 | MS.gene49633:CDS | 40.0% | |
| TCAATAAAATCGTGCACCTC+AGG | - | chr5.1:28222646-28222665 | None:intergenic | 40.0% | |
| TCTAAGTTTGTGTGCATTCC+AGG | - | chr5.1:28221507-28221526 | None:intergenic | 40.0% | |
| TCTCTCAGATTTGATTCCTC+TGG | - | chr5.1:28220554-28220573 | None:intergenic | 40.0% | |
| TGAAAGAATGTTCTTCGTCG+TGG | + | chr5.1:28222401-28222420 | MS.gene49633:CDS | 40.0% | |
| TGAAGACACAATACTGGACT+TGG | - | chr5.1:28224025-28224044 | None:intergenic | 40.0% | |
| TGGAATGCACACAAACTTAG+AGG | + | chr5.1:28221506-28221525 | MS.gene49633:intron | 40.0% | |
| TGTACTCACTATGTGAAACG+TGG | + | chr5.1:28223979-28223998 | MS.gene49633:intron | 40.0% | |
| ! | ACCTTGATGTATTGACAGTG+TGG | + | chr5.1:28222968-28222987 | MS.gene49633:CDS | 40.0% |
| ! | ATAAAGTGCTTCTGCAAGCT+AGG | - | chr5.1:28223707-28223726 | None:intergenic | 40.0% |
| ! | ATGGATTAACCCACCGAAAT+TGG | + | chr5.1:28220525-28220544 | MS.gene49633:intron | 40.0% |
| ! | ATTGAAAGAAGCACACTCCA+AGG | + | chr5.1:28220575-28220594 | MS.gene49633:intron | 40.0% |
| ! | CCTTGATGTATTGACAGTGT+GGG | + | chr5.1:28222969-28222988 | MS.gene49633:CDS | 40.0% |
| !! | AAACATGGACTGGAGTTACT+TGG | + | chr5.1:28223748-28223767 | MS.gene49633:CDS | 40.0% |
| !! | CATGCTTGCTTTTCCGTTAT+TGG | + | chr5.1:28222143-28222162 | MS.gene49633:CDS | 40.0% |
| !! | GCAGAAGCACTTTATGCATA+TGG | + | chr5.1:28223712-28223731 | MS.gene49633:CDS | 40.0% |
| !! | TTGTCAGGTTGACACACAAT+TGG | + | chr5.1:28222512-28222531 | MS.gene49633:intron | 40.0% |
| !! | TTTCGGTGGGTTAATCCATA+CGG | - | chr5.1:28220524-28220543 | None:intergenic | 40.0% |
| !!! | CGTGATGAGTTGGAGTTTTT+TGG | + | chr5.1:28222780-28222799 | MS.gene49633:CDS | 40.0% |
| AAGTGCGGGGACTAAAATTG+AGG | + | chr5.1:28221061-28221080 | MS.gene49633:intron | 45.0% | |
| ACGACTACCAATGTGCTAAC+TGG | - | chr5.1:28223852-28223871 | None:intergenic | 45.0% | |
| AGCTTTCTTATGGCGTTTGC+TGG | + | chr5.1:28224293-28224312 | MS.gene49633:CDS | 45.0% | |
| AGGTAACGACAAACATGGAC+TGG | + | chr5.1:28223738-28223757 | MS.gene49633:CDS | 45.0% | |
| ATAAGCCACGGGAACCATTT+GGG | - | chr5.1:28220626-28220645 | None:intergenic | 45.0% | |
| ATCCGTCCAAGCTCCAATAA+CGG | - | chr5.1:28222159-28222178 | None:intergenic | 45.0% | |
| ATTAGCAACGCTCATCCAAG+TGG | + | chr5.1:28223627-28223646 | MS.gene49633:intron | 45.0% | |
| CAATACTGGACTTGGATTGC+TGG | - | chr5.1:28224017-28224036 | None:intergenic | 45.0% | |
| CATGTTGTGACCATCCATCT+TGG | - | chr5.1:28222227-28222246 | None:intergenic | 45.0% | |
| CCCACACTGTCAATACATCA+AGG | - | chr5.1:28222972-28222991 | None:intergenic | 45.0% | |
| CGACTACCAATGTGCTAACT+GGG | - | chr5.1:28223851-28223870 | None:intergenic | 45.0% | |
| GAGAGATTCCACTTACAAGG+TGG | - | chr5.1:28220248-28220267 | None:intergenic | 45.0% | |
| GATTCACCCAGTTAGCACAT+TGG | + | chr5.1:28223842-28223861 | MS.gene49633:intron | 45.0% | |
| GGAAGAGGTAACGACAAACA+TGG | + | chr5.1:28223733-28223752 | MS.gene49633:CDS | 45.0% | |
| GGCACTCATACTGAAGAACA+TGG | - | chr5.1:28222357-28222376 | None:intergenic | 45.0% | |
| TATAAGCCACGGGAACCATT+TGG | - | chr5.1:28220627-28220646 | None:intergenic | 45.0% | |
| TTCCGTTATTGGAGCTTGGA+CGG | + | chr5.1:28222154-28222173 | MS.gene49633:CDS | 45.0% | |
| ! | GCTTTTCCGTTATTGGAGCT+TGG | + | chr5.1:28222150-28222169 | MS.gene49633:CDS | 45.0% |
| ! | GTTAGCACATTGGTAGTCGT+TGG | + | chr5.1:28223852-28223871 | MS.gene49633:intron | 45.0% |
| ! | TGTATTGACAGTGTGGGCTT+TGG | + | chr5.1:28222975-28222994 | MS.gene49633:CDS | 45.0% |
| !! | ATTGAACCCCTCGGATTAGT+CGG | - | chr5.1:28220456-28220475 | None:intergenic | 45.0% |
| !! | TCAGGTTGACACACAATTGG+TGG | + | chr5.1:28222515-28222534 | MS.gene49633:intron | 45.0% |
| AACCAGAGCAAAGCTCCGTA+TGG | + | chr5.1:28220506-28220525 | MS.gene49633:intron | 50.0% | |
| ACATGGACCGACTAATCCGA+GGG | + | chr5.1:28220446-28220465 | MS.gene49633:intron | 50.0% | |
| ATCCATACGGAGCTTTGCTC+TGG | - | chr5.1:28220511-28220530 | None:intergenic | 50.0% | |
| CAGGTTCTACCGCAAAACGA+AGG | + | chr5.1:28222102-28222121 | MS.gene49633:intron | 50.0% | |
| CGCAATGATCCTCAACAGCA+AGG | - | chr5.1:28224447-28224466 | None:intergenic | 50.0% | |
| CTCTGGGTACCAATTTCGGT+GGG | - | chr5.1:28220537-28220556 | None:intergenic | 50.0% | |
| GAGACGGCACAGCTTTCTTA+TGG | + | chr5.1:28224283-28224302 | MS.gene49633:CDS | 50.0% | |
| GCTAAGTCCCACCTTGTAAG+TGG | + | chr5.1:28220237-28220256 | MS.gene49633:intron | 50.0% | |
| GGATGGTCACAACATGCTGT+AGG | + | chr5.1:28222231-28222250 | MS.gene49633:intron | 50.0% | |
| GGCAACCCATGTAGAAACAC+AGG | - | chr5.1:28221922-28221941 | None:intergenic | 50.0% | |
| GTCGTTGGATCGAGATCAGA+TGG | + | chr5.1:28223867-28223886 | MS.gene49633:intron | 50.0% | |
| TTAAAATGGCCTCCCGCAAG+TGG | - | chr5.1:28220487-28220506 | None:intergenic | 50.0% | |
| TTTGCAATTGCAGCAGCGTC+TGG | - | chr5.1:28224601-28224620 | None:intergenic | 50.0% | |
| ! | ATGCTATGGCTCTGCTTCTG+CGG | + | chr5.1:28222748-28222767 | MS.gene49633:CDS | 50.0% |
| ! | TTAGCCTGGGGATGTTGGTT+TGG | - | chr5.1:28220603-28220622 | None:intergenic | 50.0% |
| !! | GAACCATTTGGGTTAGCCTG+GGG | - | chr5.1:28220615-28220634 | None:intergenic | 50.0% |
| !! | GGAACCATTTGGGTTAGCCT+GGG | - | chr5.1:28220616-28220635 | None:intergenic | 50.0% |
| !! | GGATTAGTCGGTCCATGTGA+CGG | - | chr5.1:28220444-28220463 | None:intergenic | 50.0% |
| !! | TAGCCTGGGGATGTTGGTTT+GGG | - | chr5.1:28220602-28220621 | None:intergenic | 50.0% |
| AACAGCGGAGACGCGATGAA+GGG | + | chr5.1:28224152-28224171 | MS.gene49633:CDS | 55.0% | |
| AACTGATGCCGCAGTTCCTG+AGG | + | chr5.1:28222627-28222646 | MS.gene49633:CDS | 55.0% | |
| ATCCGAGGGGTTCAATCCCA+CGG | + | chr5.1:28220460-28220479 | MS.gene49633:intron | 55.0% | |
| ATCGTGCACCTCAGGAACTG+CGG | - | chr5.1:28222638-28222657 | None:intergenic | 55.0% | |
| CACATGGACCGACTAATCCG+AGG | + | chr5.1:28220445-28220464 | MS.gene49633:intron | 55.0% | |
| CATCCCCAGGCTAACCCAAA+TGG | + | chr5.1:28220609-28220628 | MS.gene49633:intron | 55.0% | |
| CATGGACCGACTAATCCGAG+GGG | + | chr5.1:28220447-28220466 | MS.gene49633:intron | 55.0% | |
| CCACCGAAATTGGTACCCAG+AGG | + | chr5.1:28220535-28220554 | MS.gene49633:intron | 55.0% | |
| CCTCTGGGTACCAATTTCGG+TGG | - | chr5.1:28220538-28220557 | None:intergenic | 55.0% | |
| GCTAACCCAAATGGTTCCCG+TGG | + | chr5.1:28220618-28220637 | MS.gene49633:intron | 55.0% | |
| GCTGAGGAAGCTGCCAAAAG+AGG | + | chr5.1:28222186-28222205 | MS.gene49633:CDS | 55.0% | |
| GTTGTGCGTGCGTGATGAGT+TGG | + | chr5.1:28222770-28222789 | MS.gene49633:CDS | 55.0% | |
| TCAATCCCACGGTCCACTTG+CGG | + | chr5.1:28220471-28220490 | MS.gene49633:intron | 55.0% | |
| TCTCACACTCAGGCCCTGTT+TGG | - | chr5.1:28223561-28223580 | None:intergenic | 55.0% | |
| TGGACGGATGAGAGAAGCTG+AGG | + | chr5.1:28222170-28222189 | MS.gene49633:CDS | 55.0% | |
| ! | GTGTGGGCTTTGGCAAAGAC+CGG | + | chr5.1:28222985-28223004 | MS.gene49633:CDS | 55.0% |
| !! | GGGAACCATTTGGGTTAGCC+TGG | - | chr5.1:28220617-28220636 | None:intergenic | 55.0% |
| !! | GGGATGTTGGTTTGGGACCT+TGG | - | chr5.1:28220595-28220614 | None:intergenic | 55.0% |
| !! | TTGGGTTAGCCTGGGGATGT+TGG | - | chr5.1:28220608-28220627 | None:intergenic | 55.0% |
| ACCTCGAGCACGCTTTGCGT+TGG | - | chr5.1:28222574-28222593 | None:intergenic | 60.0% | |
| CAATCCCACGGTCCACTTGC+GGG | + | chr5.1:28220472-28220491 | MS.gene49633:intron | 60.0% | |
| GAACAGCGGAGACGCGATGA+AGG | + | chr5.1:28224151-28224170 | MS.gene49633:CDS | 60.0% | |
| GACCGTGGGATTGAACCCCT+CGG | - | chr5.1:28220465-28220484 | None:intergenic | 60.0% | |
| GGTCCCAAACCAACATCCCC+AGG | + | chr5.1:28220596-28220615 | MS.gene49633:intron | 60.0% | |
| TCCAACGCAAAGCGTGCTCG+AGG | + | chr5.1:28222570-28222589 | MS.gene49633:CDS | 60.0% | |
| GCCTCCCGCAAGTGGACCGT+GGG | - | chr5.1:28220479-28220498 | None:intergenic | 70.0% | |
| TCCCACGGTCCACTTGCGGG+AGG | + | chr5.1:28220475-28220494 | MS.gene49633:intron | 70.0% | |
| GGCCTCCCGCAAGTGGACCG+TGG | - | chr5.1:28220480-28220499 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 28219893 | 28224660 | 28219893 | ID=MS.gene49633 |
| chr5.1 | mRNA | 28219893 | 28224660 | 28219893 | ID=MS.gene49633.t1;Parent=MS.gene49633 |
| chr5.1 | exon | 28219893 | 28219985 | 28219893 | ID=MS.gene49633.t1.exon1;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28219893 | 28219985 | 28219893 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28220099 | 28220251 | 28220099 | ID=MS.gene49633.t1.exon2;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28220099 | 28220251 | 28220099 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28221170 | 28221268 | 28221170 | ID=MS.gene49633.t1.exon3;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28221170 | 28221268 | 28221170 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28221869 | 28221970 | 28221869 | ID=MS.gene49633.t1.exon4;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28221869 | 28221970 | 28221869 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28222105 | 28222248 | 28222105 | ID=MS.gene49633.t1.exon5;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28222105 | 28222248 | 28222105 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28222349 | 28222443 | 28222349 | ID=MS.gene49633.t1.exon6;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28222349 | 28222443 | 28222349 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28222519 | 28222648 | 28222519 | ID=MS.gene49633.t1.exon7;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28222519 | 28222648 | 28222519 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28222738 | 28222842 | 28222738 | ID=MS.gene49633.t1.exon8;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28222738 | 28222842 | 28222738 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28222946 | 28223052 | 28222946 | ID=MS.gene49633.t1.exon9;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28222946 | 28223052 | 28222946 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28223131 | 28223182 | 28223131 | ID=MS.gene49633.t1.exon10;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28223131 | 28223182 | 28223131 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28223709 | 28223798 | 28223709 | ID=MS.gene49633.t1.exon11;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28223709 | 28223798 | 28223709 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28224089 | 28224173 | 28224089 | ID=MS.gene49633.t1.exon12;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28224089 | 28224173 | 28224089 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28224250 | 28224314 | 28224250 | ID=MS.gene49633.t1.exon13;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28224250 | 28224314 | 28224250 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| chr5.1 | exon | 28224571 | 28224660 | 28224571 | ID=MS.gene49633.t1.exon14;Parent=MS.gene49633.t1 |
| chr5.1 | CDS | 28224571 | 28224660 | 28224571 | ID=cds.MS.gene49633.t1;Parent=MS.gene49633.t1 |
| Gene Sequence |
| Protein sequence |
