Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49688.t1 | XP_013451165.1 | 97.2 | 247 | 7 | 0 | 122 | 368 | 189 | 435 | 1.20E-138 | 503.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49688.t1 | Q43870 | 89.9 | 248 | 25 | 0 | 121 | 368 | 178 | 425 | 2.8e-133 | 476.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49688.t1 | G7ZV13 | 97.2 | 247 | 7 | 0 | 122 | 368 | 189 | 435 | 8.4e-139 | 503.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene49688 | 0.812539 | 4.03E-51 | -1.69E-46 |
| MS.gene049369 | MS.gene49688 | 0.813251 | 2.81E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene49688 | 0.822352 | 2.48E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene49688 | 0.827703 | 1.35E-54 | -1.69E-46 |
| MS.gene050593 | MS.gene49688 | 0.812734 | 3.65E-51 | -1.69E-46 |
| MS.gene050686 | MS.gene49688 | 0.81483 | 1.26E-51 | -1.69E-46 |
| MS.gene050747 | MS.gene49688 | 0.811151 | 8.08E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene49688 | 0.840782 | 7.07E-58 | -1.69E-46 |
| MS.gene050950 | MS.gene49688 | 0.811379 | 7.21E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene49688 | 0.800105 | 1.68E-48 | -1.69E-46 |
| MS.gene051387 | MS.gene49688 | 0.801349 | 9.39E-49 | -1.69E-46 |
| MS.gene051692 | MS.gene49688 | 0.813879 | 2.05E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene49688 | 0.826905 | 2.10E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene49688 | 0.813915 | 2.01E-51 | -1.69E-46 |
| MS.gene052615 | MS.gene49688 | 0.808619 | 2.83E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene49688 | 0.831683 | 1.45E-55 | -1.69E-46 |
| MS.gene053286 | MS.gene49688 | 0.821667 | 3.57E-53 | -1.69E-46 |
| MS.gene053574 | MS.gene49688 | 0.840511 | 8.32E-58 | -1.69E-46 |
| MS.gene053813 | MS.gene49688 | 0.801429 | 9.04E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene49688 | 0.807587 | 4.70E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene49688 | 0.839763 | 1.30E-57 | -1.69E-46 |
| MS.gene055722 | MS.gene49688 | 0.850759 | 1.38E-60 | -1.69E-46 |
| MS.gene055909 | MS.gene49688 | 0.801247 | 9.85E-49 | -1.69E-46 |
| MS.gene055911 | MS.gene49688 | 0.803764 | 2.98E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene49688 | 0.800952 | 1.13E-48 | -1.69E-46 |
| MS.gene056374 | MS.gene49688 | 0.808091 | 3.67E-50 | -1.69E-46 |
| MS.gene056422 | MS.gene49688 | 0.81016 | 1.32E-50 | -1.69E-46 |
| MS.gene056448 | MS.gene49688 | 0.820397 | 7.01E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene49688 | 0.817089 | 3.95E-52 | -1.69E-46 |
| MS.gene056549 | MS.gene49688 | 0.804701 | 1.90E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene49688 | 0.80532 | 1.41E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene49688 | 0.814593 | 1.42E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene49688 | 0.823261 | 1.52E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene49688 | 0.827499 | 1.51E-54 | -1.69E-46 |
| MS.gene057856 | MS.gene49688 | 0.804916 | 1.72E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene49688 | 0.807142 | 5.84E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene49688 | 0.808248 | 3.40E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene49688 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene05883 | MS.gene49688 | 0.816863 | 4.44E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene49688 | 0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene49688 | 0.804191 | 2.43E-49 | -1.69E-46 |
| MS.gene059368 | MS.gene49688 | 0.800532 | 1.38E-48 | -1.69E-46 |
| MS.gene059536 | MS.gene49688 | 0.841723 | 4.00E-58 | -1.69E-46 |
| MS.gene059718 | MS.gene49688 | 0.800112 | 1.68E-48 | -1.69E-46 |
| MS.gene059902 | MS.gene49688 | 0.8222 | 2.69E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene49688 | 0.824645 | 7.22E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene49688 | 0.826874 | 2.13E-54 | -1.69E-46 |
| MS.gene060818 | MS.gene49688 | 0.805543 | 1.27E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene49688 | 0.831464 | 1.64E-55 | -1.69E-46 |
| MS.gene061134 | MS.gene49688 | 0.800145 | 1.65E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene49688 | 0.812328 | 4.48E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49688.t1 | MTR_6g016335 | 97.166 | 247 | 7 | 0 | 122 | 368 | 189 | 435 | 4.60e-178 | 504 |
| MS.gene49688.t1 | MTR_1g102550 | 83.806 | 247 | 40 | 0 | 122 | 368 | 167 | 413 | 1.22e-153 | 441 |
| MS.gene49688.t1 | MTR_6g016320 | 96.774 | 62 | 2 | 0 | 258 | 319 | 11 | 72 | 1.57e-37 | 130 |
| MS.gene49688.t1 | MTR_6g016325 | 94.118 | 51 | 3 | 0 | 318 | 368 | 30 | 80 | 4.11e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49688.t1 | AT1G19920 | 87.549 | 257 | 29 | 1 | 115 | 368 | 169 | 425 | 4.81e-168 | 478 |
| MS.gene49688.t1 | AT3G22890 | 83.806 | 247 | 40 | 0 | 122 | 368 | 165 | 411 | 1.06e-153 | 441 |
| MS.gene49688.t1 | AT4G14680 | 83.401 | 247 | 41 | 0 | 122 | 368 | 167 | 413 | 1.27e-151 | 436 |
| MS.gene49688.t1 | AT5G43780 | 83.401 | 247 | 41 | 0 | 122 | 368 | 169 | 415 | 1.93e-151 | 436 |
| MS.gene49688.t1 | AT4G14680 | 83.401 | 247 | 41 | 0 | 122 | 368 | 167 | 413 | 6.27e-151 | 436 |
Find 105 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTTGCGATTTGCGATTC+TGG | 0.055927 | 4.4:+8238525 | MS.gene49688:CDS |
| CCAGCTGGAAATTGGCTTAT+TGG | 0.194116 | 4.4:+8239836 | MS.gene49688:CDS |
| CTGCAATCAGATTGTGGGTT+AGG | 0.223794 | 4.4:-8238369 | None:intergenic |
| ACAGGATGAAGCAATAAAAT+TGG | 0.258258 | 4.4:-8240064 | None:intergenic |
| TGCTTGCGATTTGCGATTCT+GGG | 0.276568 | 4.4:+8238526 | MS.gene49688:CDS |
| TCATTGTTCCAGCTGGAAAT+TGG | 0.287994 | 4.4:+8239828 | MS.gene49688:CDS |
| TTAACAAGGCATGACCATTA+TGG | 0.305379 | 4.4:-8239997 | None:intergenic |
| TTGGCTTATTGGAGGAGATT+TGG | 0.324311 | 4.4:+8239847 | MS.gene49688:CDS |
| GAATTCTTCACGAAGTTGTT+TGG | 0.332061 | 4.4:-8239924 | None:intergenic |
| ATTCTGGGTTCTCTTTGTTC+AGG | 0.337335 | 4.4:+8238541 | MS.gene49688:CDS |
| GATCAAGAACTCCATCTTCT+AGG | 0.341116 | 4.4:-8241722 | None:intergenic |
| CGTGACGTAGCCGGTGAAAT+TGG | 0.351325 | 4.4:-8238422 | None:intergenic |
| CGCCTTTCAGTTAAGAAATC+CGG | 0.363354 | 4.4:+8239973 | MS.gene49688:CDS |
| ACAAGGTTTGCCGGTGAAAT+CGG | 0.368929 | 4.4:-8238456 | None:intergenic |
| AGACCATCATTGTATTTGAT+AGG | 0.381497 | 4.4:-8239881 | None:intergenic |
| AATTCTTCACGAAGTTGTTT+GGG | 0.383556 | 4.4:-8239923 | None:intergenic |
| AAGATTGTGGGGACTGATTG+TGG | 0.394457 | 4.4:-8238215 | None:intergenic |
| GGAACGTTCGTCGGTGAAAT+CGG | 0.412473 | 4.4:-8238330 | None:intergenic |
| AACCGTGAAACAAGGTTTGC+CGG | 0.413546 | 4.4:-8238465 | None:intergenic |
| TGCAATCAGATTGTGGGTTA+GGG | 0.415627 | 4.4:-8238368 | None:intergenic |
| TCCTCAACGTAAGGCAATCC+TGG | 0.418206 | 4.4:-8239803 | None:intergenic |
| CCGGTGAAATCGGCGCAATC+AGG | 0.419170 | 4.4:-8238446 | None:intergenic |
| TGGTCGCGATCCCGCTGGTA+TGG | 0.419632 | 4.4:+8241857 | MS.gene49688:CDS |
| CACCGGCAAACCTTGTTTCA+CGG | 0.420050 | 4.4:+8238463 | MS.gene49688:CDS |
| CGTCGGAGTTACGGAGGTTA+TGG | 0.421140 | 4.4:-8238275 | None:intergenic |
| ACGATGTTCCGTTAGATGTC+AGG | 0.428955 | 4.4:+8240107 | MS.gene49688:CDS |
| TCCTGGAGCAGTTGTTTCCC+AGG | 0.432378 | 4.4:-8239786 | None:intergenic |
| GGCGCCAACTTCTATATTGT+TGG | 0.437597 | 4.4:+8241837 | MS.gene49688:CDS |
| TTATTGCTTCATCCTGTTGG+AGG | 0.437861 | 4.4:+8240070 | MS.gene49688:CDS |
| ATAGAAACAATGGTTGTCTC+TGG | 0.438582 | 4.4:-8241744 | None:intergenic |
| GGGTCATCCAACTGAGAAAC+GGG | 0.451624 | 4.4:+8241878 | MS.gene49688:CDS |
| TGTTCATAGGTCCTAGAAGA+TGG | 0.456208 | 4.4:+8241711 | MS.gene49688:intron |
| CAATCCCGCCGTGAATCAAC+CGG | 0.462511 | 4.4:-8238305 | None:intergenic |
| GCATGCCATTGTACTTCACT+TGG | 0.465203 | 4.4:-8241795 | None:intergenic |
| CCATCGCCTATGCATTATGC+AGG | 0.471656 | 4.4:+8241771 | MS.gene49688:CDS |
| GGTCGCGATCCCGCTGGTAT+GGG | 0.473901 | 4.4:+8241858 | MS.gene49688:CDS |
| GGAAAACGACGTCGGAGTTA+CGG | 0.482693 | 4.4:-8238284 | None:intergenic |
| CCTGATTGCGCCGATTTCAC+CGG | 0.489924 | 4.4:+8238446 | MS.gene49688:CDS |
| GACTTGTATGACCCTGATCA+TGG | 0.490265 | 4.4:+8241900 | MS.gene49688:CDS |
| TACAAGTCCCGTTTCTCAGT+TGG | 0.492506 | 4.4:-8241885 | None:intergenic |
| AGATTGTGGGGACTGATTGT+GGG | 0.496647 | 4.4:-8238214 | None:intergenic |
| TGGGTCATCCAACTGAGAAA+CGG | 0.499633 | 4.4:+8241877 | MS.gene49688:CDS |
| GTTATGGTGGCGCGTGAGCA+AGG | 0.501243 | 4.4:-8238259 | None:intergenic |
| ACCTGGGAAACAACTGCTCC+AGG | 0.502578 | 4.4:+8239785 | MS.gene49688:CDS |
| GCAATACTACTTACCCTGAA+TGG | 0.502969 | 4.4:-8241972 | None:intergenic |
| CAATCAGGCCGTGACGTAGC+CGG | 0.504701 | 4.4:-8238431 | None:intergenic |
| ATTGTTGGTCGCGATCCCGC+TGG | 0.504920 | 4.4:+8241852 | MS.gene49688:CDS |
| AAACCTATCAAATACAATGA+TGG | 0.508307 | 4.4:+8239878 | MS.gene49688:CDS |
| AAGAAAGAATAGCTAGAACC+TGG | 0.509563 | 4.4:+8239768 | MS.gene49688:CDS |
| TTAAGAAATCCGGTCCATAA+TGG | 0.512744 | 4.4:+8239983 | MS.gene49688:CDS |
| GCAAAGGCACGGATAAATGC+AGG | 0.515091 | 4.4:+8241816 | MS.gene49688:CDS |
| ACCTTTGTGAAACCTCCAAC+AGG | 0.515528 | 4.4:-8240082 | None:intergenic |
| GCTGGAAATTGGCTTATTGG+AGG | 0.523653 | 4.4:+8239839 | MS.gene49688:CDS |
| TGAAATTGGAGTCGCGAAAA+CGG | 0.524650 | 4.4:-8238408 | None:intergenic |
| ATGATGGTCTTGATAACTAC+AGG | 0.527746 | 4.4:+8239894 | MS.gene49688:CDS |
| ATGAGGTAGGAGAAGATTGT+GGG | 0.528740 | 4.4:-8238227 | None:intergenic |
| TATGAGGTAGGAGAAGATTG+TGG | 0.529817 | 4.4:-8238228 | None:intergenic |
| ATGTTAAGCTTCTCGAGACC+AGG | 0.540824 | 4.4:-8241945 | None:intergenic |
| GAGCAAGGTTGAGTCGTATG+AGG | 0.542777 | 4.4:-8238244 | None:intergenic |
| TCCAGGATTGCCTTACGTTG+AGG | 0.546081 | 4.4:+8239802 | MS.gene49688:CDS |
| GAGGAGGTCATTGTTCCAGC+TGG | 0.547705 | 4.4:+8239821 | MS.gene49688:CDS |
| CAGAATCGCAAATCGCAAGC+AGG | 0.555147 | 4.4:-8238524 | None:intergenic |
| AAGGTGCTTAGCATGGCTCC+TGG | 0.555425 | 4.4:+8241927 | MS.gene49688:CDS |
| GCGACCAACAATATAGAAGT+TGG | 0.557999 | 4.4:-8241841 | None:intergenic |
| CCAATAAGCCAATTTCCAGC+TGG | 0.563923 | 4.4:-8239836 | None:intergenic |
| GACCGGATTTCTTAACTGAA+AGG | 0.569641 | 4.4:-8239975 | None:intergenic |
| TGCTCCATCCTGACATCTAA+CGG | 0.570183 | 4.4:-8240115 | None:intergenic |
| ACGAGTATCGTTCATTAACA+AGG | 0.579648 | 4.4:-8240011 | None:intergenic |
| AGAAAGCTTTAGCACGGCTA+GGG | 0.581287 | 4.4:-8242448 | None:intergenic |
| CTTGGCCCTGCATAATGCAT+AGG | 0.581891 | 4.4:-8241777 | None:intergenic |
| TAGAAAGCTTTAGCACGGCT+AGG | 0.584667 | 4.4:-8242449 | None:intergenic |
| TTTCGCGACTCCAATTTCAC+CGG | 0.586844 | 4.4:+8238412 | MS.gene49688:CDS |
| AGAAAGAATAGCTAGAACCT+GGG | 0.590601 | 4.4:+8239769 | MS.gene49688:CDS |
| AAGGTTGAGTCGTATGAGGT+AGG | 0.591096 | 4.4:-8238240 | None:intergenic |
| GTTGGATGACCCATACCAGC+GGG | 0.598608 | 4.4:-8241867 | None:intergenic |
| TCGTCAACGTCTATTAGACA+TGG | 0.599665 | 4.4:+8240030 | MS.gene49688:CDS |
| TACAATGGCATGCAAAGGCA+CGG | 0.599759 | 4.4:+8241805 | MS.gene49688:CDS |
| CGATGGAAATATAGAAACAA+TGG | 0.600676 | 4.4:-8241754 | None:intergenic |
| CAGCGAGCAACCGTGAAACA+AGG | 0.603869 | 4.4:-8238473 | None:intergenic |
| TTAGGGTCGCACAAAGGTGA+AGG | 0.603942 | 4.4:-8238351 | None:intergenic |
| ACAATGACCTCCTCAACGTA+AGG | 0.605536 | 4.4:-8239812 | None:intergenic |
| GGTGGCAGCTTATGACACTA+AGG | 0.610562 | 4.4:+8242403 | MS.gene49688:intron |
| AAGGCATGACCATTATGGAC+CGG | 0.612091 | 4.4:-8239992 | None:intergenic |
| CCTGCATAATGCATAGGCGA+TGG | 0.613223 | 4.4:-8241771 | None:intergenic |
| CAGGATGGAGCAACATAGCA+AGG | 0.622612 | 4.4:+8240126 | MS.gene49688:CDS |
| AGGATTGCCTTACGTTGAGG+AGG | 0.626411 | 4.4:+8239805 | MS.gene49688:CDS |
| TGAAGTACAATGGCATGCAA+AGG | 0.627938 | 4.4:+8241800 | MS.gene49688:CDS |
| GATTGTGGGGACTGATTGTG+GGG | 0.628124 | 4.4:-8238213 | None:intergenic |
| CATCGCCTATGCATTATGCA+GGG | 0.632349 | 4.4:+8241772 | MS.gene49688:CDS |
| CGGAGTTACGGAGGTTATGG+TGG | 0.639779 | 4.4:-8238272 | None:intergenic |
| AACTTCGTGAAGAATTCGAT+AGG | 0.647589 | 4.4:+8239930 | MS.gene49688:CDS |
| AGAATGAAGTAAAACGAGGT+CGG | 0.649523 | 4.4:-8238498 | None:intergenic |
| CAATTTCACCGGCTACGTCA+CGG | 0.650192 | 4.4:+8238423 | MS.gene49688:CDS |
| ACGTGTAGAAAGCTTTAGCA+CGG | 0.651162 | 4.4:-8242454 | None:intergenic |
| AAAGGTGAAGGAACGTTCGT+CGG | 0.651723 | 4.4:-8238339 | None:intergenic |
| CAGGGCCAAGTGAAGTACAA+TGG | 0.651820 | 4.4:+8241790 | MS.gene49688:CDS |
| TCCTGTTGGAGGTTTCACAA+AGG | 0.658037 | 4.4:+8240081 | MS.gene49688:CDS |
| CGTCAACGTCTATTAGACAT+GGG | 0.666925 | 4.4:+8240031 | MS.gene49688:CDS |
| TGTTCCGTTAGATGTCAGGA+TGG | 0.672939 | 4.4:+8240111 | MS.gene49688:CDS |
| AAACGACGTCGGAGTTACGG+AGG | 0.675795 | 4.4:-8238281 | None:intergenic |
| TGTGGGTTAGGGTCGCACAA+AGG | 0.702394 | 4.4:-8238357 | None:intergenic |
| TGAGGTAGGAGAAGATTGTG+GGG | 0.712325 | 4.4:-8238226 | None:intergenic |
| AGTTGGATGACCCATACCAG+CGG | 0.716912 | 4.4:-8241868 | None:intergenic |
| AATCAACCGGAAAACGACGT+CGG | 0.740392 | 4.4:-8238292 | None:intergenic |
| GAAGAGAATGAAGTAAAACG+AGG | 0.796781 | 4.4:-8238502 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAACATTGATTATTAT+AGG | - | chr4.4:8240394-8240413 | None:intergenic | 10.0% |
| !! | ATAAAAGAATTTCAAATGAA+AGG | - | chr4.4:8240456-8240475 | None:intergenic | 15.0% |
| !! | GAAAAATTAATGAATAACAT+AGG | - | chr4.4:8241625-8241644 | None:intergenic | 15.0% |
| !!! | AGTTAATTTTTTTAAAGCAT+TGG | + | chr4.4:8241658-8241677 | MS.gene49688:intron | 15.0% |
| !!! | TGAAATTTTGTACAAAAAAA+TGG | - | chr4.4:8242213-8242232 | None:intergenic | 15.0% |
| !! | ATGTTAAAAAATGAACAAGA+TGG | - | chr4.4:8239611-8239630 | None:intergenic | 20.0% |
| !! | GTTATTCAAATTTAGTGATT+TGG | + | chr4.4:8238971-8238990 | MS.gene49688:intron | 20.0% |
| !! | GTTCAATTTATGATATCTAA+TGG | + | chr4.4:8239030-8239049 | MS.gene49688:intron | 20.0% |
| !! | TAATGAAGAATCTGAATATT+GGG | + | chr4.4:8241547-8241566 | MS.gene49688:intron | 20.0% |
| !!! | AAATTCTTTTTCTTGTTCAT+AGG | + | chr4.4:8240644-8240663 | MS.gene49688:intron | 20.0% |
| !!! | AATGTTTTAAAAATTGACCT+TGG | + | chr4.4:8240403-8240422 | MS.gene49688:intron | 20.0% |
| !!! | GAATCAATTTTGTTTAATAC+TGG | + | chr4.4:8240187-8240206 | MS.gene49688:intron | 20.0% |
| ! | AAAATTGTTACTCTGTTGAA+GGG | + | chr4.4:8240932-8240951 | MS.gene49688:intron | 25.0% |
| ! | AAACCTATCAAATACAATGA+TGG | + | chr4.4:8239878-8239897 | MS.gene49688:CDS | 25.0% |
| ! | AAAGAAATTGAACTATGACT+CGG | - | chr4.4:8239500-8239519 | None:intergenic | 25.0% |
| ! | AACAAACAAGAAAGATCTAT+AGG | - | chr4.4:8240581-8240600 | None:intergenic | 25.0% |
| ! | ACACCATATATCTTATTGTT+GGG | + | chr4.4:8242239-8242258 | MS.gene49688:intron | 25.0% |
| ! | ACAGATATGTAACATTCATA+AGG | - | chr4.4:8241144-8241163 | None:intergenic | 25.0% |
| ! | ACTTTGTATACTAAAGAACA+AGG | - | chr4.4:8242285-8242304 | None:intergenic | 25.0% |
| ! | CATATACGATTGAAAATTGT+AGG | - | chr4.4:8239385-8239404 | None:intergenic | 25.0% |
| ! | CTAATGAAGAATCTGAATAT+TGG | + | chr4.4:8241546-8241565 | MS.gene49688:intron | 25.0% |
| ! | CTATAAGTTAGACAAAATCA+CGG | - | chr4.4:8239248-8239267 | None:intergenic | 25.0% |
| ! | GATTATAATAGCATGTGATT+TGG | - | chr4.4:8242120-8242139 | None:intergenic | 25.0% |
| ! | GCTATATGAGAAAAAAATGA+TGG | - | chr4.4:8240158-8240177 | None:intergenic | 25.0% |
| ! | GTAATATAAAATGGCAAACA+AGG | - | chr4.4:8242382-8242401 | None:intergenic | 25.0% |
| ! | TACAATGATTCAAATTACAG+TGG | + | chr4.4:8238679-8238698 | MS.gene49688:intron | 25.0% |
| ! | TACACCATATATCTTATTGT+TGG | + | chr4.4:8242238-8242257 | MS.gene49688:intron | 25.0% |
| ! | TAGATAGAGAAAATACTACT+CGG | - | chr4.4:8241086-8241105 | None:intergenic | 25.0% |
| ! | TCACATGCTATTATAATCTT+CGG | + | chr4.4:8242122-8242141 | MS.gene49688:intron | 25.0% |
| ! | TTATGCAATTGGAAGAATAA+TGG | + | chr4.4:8241497-8241516 | MS.gene49688:intron | 25.0% |
| ! | TTCTTTAAACTACTCAAACT+GGG | + | chr4.4:8239514-8239533 | MS.gene49688:intron | 25.0% |
| ! | TTTCTTTAAACTACTCAAAC+TGG | + | chr4.4:8239513-8239532 | MS.gene49688:intron | 25.0% |
| !! | CAACTTATCAGCAAAATTTT+AGG | - | chr4.4:8242337-8242356 | None:intergenic | 25.0% |
| !! | CTAAAATTTTGCTGATAAGT+TGG | + | chr4.4:8242335-8242354 | MS.gene49688:intron | 25.0% |
| !! | TTTTTGAATTACAATGGCTA+TGG | + | chr4.4:8239637-8239656 | MS.gene49688:intron | 25.0% |
| !!! | ATTGTTTTGTTTACTTGTGA+TGG | + | chr4.4:8241115-8241134 | MS.gene49688:intron | 25.0% |
| !!! | CGGTTAATTTTTTAAAGCAT+TGG | + | chr4.4:8240604-8240623 | MS.gene49688:intron | 25.0% |
| !!! | TGGCATATTGATTCAAATAT+CGG | + | chr4.4:8238926-8238945 | MS.gene49688:intron | 25.0% |
| !!! | TGTTTGCCATTTTATATTAC+AGG | + | chr4.4:8242382-8242401 | MS.gene49688:intron | 25.0% |
| !!! | TTGTTCATTTTTTAACATGC+TGG | + | chr4.4:8239613-8239632 | MS.gene49688:intron | 25.0% |
| AAACAACTAGGCAAAAGTTA+TGG | + | chr4.4:8238098-8238117 | MS.gene49688:intron | 30.0% | |
| AAACCAATATGCTGTGTAAA+TGG | - | chr4.4:8238906-8238925 | None:intergenic | 30.0% | |
| AAACCATTTACACAGCATAT+TGG | + | chr4.4:8238900-8238919 | MS.gene49688:intron | 30.0% | |
| AAACCATTTCCACAACAAAA+TGG | + | chr4.4:8238857-8238876 | MS.gene49688:intron | 30.0% | |
| AACTTCCTGGAAAATATTGA+AGG | - | chr4.4:8241207-8241226 | None:intergenic | 30.0% | |
| AATCACAACCATCAGATAAT+TGG | + | chr4.4:8238156-8238175 | MS.gene49688:intron | 30.0% | |
| AATTCTTCACGAAGTTGTTT+GGG | - | chr4.4:8239926-8239945 | None:intergenic | 30.0% | |
| ACAGGATGAAGCAATAAAAT+TGG | - | chr4.4:8240067-8240086 | None:intergenic | 30.0% | |
| AGACCATCATTGTATTTGAT+AGG | - | chr4.4:8239884-8239903 | None:intergenic | 30.0% | |
| ATACAAACAAAATCACGTGA+AGG | - | chr4.4:8240831-8240850 | None:intergenic | 30.0% | |
| ATATATCTTATTGTTGGGGA+TGG | + | chr4.4:8242244-8242263 | MS.gene49688:intron | 30.0% | |
| ATCCCCAACAATAAGATATA+TGG | - | chr4.4:8242245-8242264 | None:intergenic | 30.0% | |
| ATCTCAGTTCATGGTTTAAT+TGG | + | chr4.4:8239580-8239599 | MS.gene49688:intron | 30.0% | |
| ATTTAAGTAAACTCCTGTCA+TGG | + | chr4.4:8239662-8239681 | MS.gene49688:intron | 30.0% | |
| CACCATATATCTTATTGTTG+GGG | + | chr4.4:8242240-8242259 | MS.gene49688:intron | 30.0% | |
| CGATGGAAATATAGAAACAA+TGG | - | chr4.4:8241757-8241776 | None:intergenic | 30.0% | |
| CTGCAAAGAAGTGAAATTAA+TGG | - | chr4.4:8239722-8239741 | None:intergenic | 30.0% | |
| GAAAATTGTTACTCTGTTGA+AGG | + | chr4.4:8240931-8240950 | MS.gene49688:intron | 30.0% | |
| GAAGTGAAATTAATGGTCAT+TGG | - | chr4.4:8239715-8239734 | None:intergenic | 30.0% | |
| TATGCATAGTGCATAAGTTA+TGG | - | chr4.4:8238132-8238151 | None:intergenic | 30.0% | |
| TTAAAAATTGACCTTGGAAG+TGG | + | chr4.4:8240409-8240428 | MS.gene49688:intron | 30.0% | |
| TTACATATCTGTGCATGTAT+TGG | + | chr4.4:8241152-8241171 | MS.gene49688:intron | 30.0% | |
| TTATTCGAGAAGTTAGATTG+CGG | + | chr4.4:8240523-8240542 | MS.gene49688:intron | 30.0% | |
| ! | AAAGCATTCCTTCAAAGAAA+AGG | + | chr4.4:8241405-8241424 | MS.gene49688:intron | 30.0% |
| ! | ATTTTACACAACCAACCATA+TGG | - | chr4.4:8241573-8241592 | None:intergenic | 30.0% |
| ! | ATTTTATTGCTTCATCCTGT+TGG | + | chr4.4:8240067-8240086 | MS.gene49688:CDS | 30.0% |
| ! | GCTGGATTTTTGAATTACAA+TGG | + | chr4.4:8239631-8239650 | MS.gene49688:intron | 30.0% |
| ! | TTCAATATTTTCCAGGAAGT+TGG | + | chr4.4:8241206-8241225 | MS.gene49688:intron | 30.0% |
| !! | AAACCATTTTGTTGTGGAAA+TGG | - | chr4.4:8238863-8238882 | None:intergenic | 30.0% |
| !! | ACGTGATTTTGTTTGTATAG+TGG | + | chr4.4:8240833-8240852 | MS.gene49688:intron | 30.0% |
| !! | GATCTTTCTTGTTTGTTGTA+CGG | + | chr4.4:8240584-8240603 | MS.gene49688:intron | 30.0% |
| !! | TAATAGCATGTGATTTGGTT+CGG | - | chr4.4:8242115-8242134 | None:intergenic | 30.0% |
| !! | TGATTTTGTTTGTATAGTGG+AGG | + | chr4.4:8240836-8240855 | MS.gene49688:intron | 30.0% |
| !! | TTGACTTGGATCTGTTTATA+CGG | - | chr4.4:8242053-8242072 | None:intergenic | 30.0% |
| !!! | ACATGAAAGTAGTTTTGAGA+TGG | + | chr4.4:8241255-8241274 | MS.gene49688:intron | 30.0% |
| !!! | CAATGTTTTAGAAATCGAAC+CGG | + | chr4.4:8239454-8239473 | MS.gene49688:intron | 30.0% |
| !!! | TTCAGCTTTTATCGATTTTG+AGG | - | chr4.4:8242164-8242183 | None:intergenic | 30.0% |
| !!! | TTGCCATTTTATATTACAGG+TGG | + | chr4.4:8242385-8242404 | MS.gene49688:intron | 30.0% |
| !!! | TTTACACAGCATATTGGTTT+TGG | + | chr4.4:8238906-8238925 | MS.gene49688:intron | 30.0% |
| AAAAAATGGACAGCATTGTG+AGG | - | chr4.4:8242199-8242218 | None:intergenic | 35.0% | |
| AAAAATGGACAGCATTGTGA+GGG | - | chr4.4:8242198-8242217 | None:intergenic | 35.0% | |
| AACAGTTTCACTATACCACT+TGG | + | chr4.4:8241330-8241349 | MS.gene49688:intron | 35.0% | |
| AACTTCGTGAAGAATTCGAT+AGG | + | chr4.4:8239930-8239949 | MS.gene49688:CDS | 35.0% | |
| AAGAAAGAATAGCTAGAACC+TGG | + | chr4.4:8239768-8239787 | MS.gene49688:CDS | 35.0% | |
| AAGGATCAAAACTCAAATCC+AGG | - | chr4.4:8240812-8240831 | None:intergenic | 35.0% | |
| AATAATCAGTAGACAGCTCT+TGG | - | chr4.4:8240508-8240527 | None:intergenic | 35.0% | |
| AATCTGAATATTGGGCCATA+TGG | + | chr4.4:8241555-8241574 | MS.gene49688:intron | 35.0% | |
| ACAAGTGTCCAATTATCTGA+TGG | - | chr4.4:8238167-8238186 | None:intergenic | 35.0% | |
| AGAAAGAATAGCTAGAACCT+GGG | + | chr4.4:8239769-8239788 | MS.gene49688:CDS | 35.0% | |
| AGAATGAAGTAAAACGAGGT+CGG | - | chr4.4:8238501-8238520 | None:intergenic | 35.0% | |
| ATAGAAACAATGGTTGTCTC+TGG | - | chr4.4:8241747-8241766 | None:intergenic | 35.0% | |
| CAAGAAAGATCTATAGGTCA+TGG | - | chr4.4:8240575-8240594 | None:intergenic | 35.0% | |
| CCAGGATAAATGTGCAAATA+TGG | - | chr4.4:8240794-8240813 | None:intergenic | 35.0% | |
| CCATATTTGCACATTTATCC+TGG | + | chr4.4:8240791-8240810 | MS.gene49688:intron | 35.0% | |
| CTGCCACCTGTAATATAAAA+TGG | - | chr4.4:8242391-8242410 | None:intergenic | 35.0% | |
| GAAGAGAATGAAGTAAAACG+AGG | - | chr4.4:8238505-8238524 | None:intergenic | 35.0% | |
| GAATTCTTCACGAAGTTGTT+TGG | - | chr4.4:8239927-8239946 | None:intergenic | 35.0% | |
| GGACACTTGTAATGATCATA+TGG | + | chr4.4:8238177-8238196 | MS.gene49688:intron | 35.0% | |
| TAATCCACTCAAGGATTTCA+AGG | + | chr4.4:8240721-8240740 | MS.gene49688:intron | 35.0% | |
| TATCGTACAACATGCTTGAT+AGG | + | chr4.4:8238070-8238089 | MS.gene49688:intron | 35.0% | |
| TATTCCTTGAAATCCTTGAG+TGG | - | chr4.4:8240728-8240747 | None:intergenic | 35.0% | |
| TCTTCAACTCAGTGTATGTT+TGG | - | chr4.4:8239276-8239295 | None:intergenic | 35.0% | |
| TGATAGGAGAAGAAACAACT+AGG | + | chr4.4:8238086-8238105 | MS.gene49688:intron | 35.0% | |
| TGGATAAACTGCTTTATACC+AGG | - | chr4.4:8240555-8240574 | None:intergenic | 35.0% | |
| TTAACAAGGCATGACCATTA+TGG | - | chr4.4:8240000-8240019 | None:intergenic | 35.0% | |
| TTAAGAAATCCGGTCCATAA+TGG | + | chr4.4:8239983-8240002 | MS.gene49688:CDS | 35.0% | |
| TTATTTGGGAGGTTCAACTA+CGG | - | chr4.4:8239546-8239565 | None:intergenic | 35.0% | |
| TTCCAATTGCATAAAACAGC+TGG | - | chr4.4:8241491-8241510 | None:intergenic | 35.0% | |
| TTTCAAGAACTCCATCTTCT+AGG | - | chr4.4:8240671-8240690 | None:intergenic | 35.0% | |
| ! | ACGAGTATCGTTCATTAACA+AGG | - | chr4.4:8240014-8240033 | None:intergenic | 35.0% |
| ! | AGCTTAACATTTTGCCATTC+AGG | + | chr4.4:8241958-8241977 | MS.gene49688:CDS | 35.0% |
| ! | ATGATGGTCTTGATAACTAC+AGG | + | chr4.4:8239894-8239913 | MS.gene49688:CDS | 35.0% |
| ! | CATGACCTTCAATATTTTCC+AGG | + | chr4.4:8241199-8241218 | MS.gene49688:intron | 35.0% |
| ! | GCTTAACATTTTGCCATTCA+GGG | + | chr4.4:8241959-8241978 | MS.gene49688:CDS | 35.0% |
| ! | GTTTTCTGCAATCAGATTGT+GGG | - | chr4.4:8238377-8238396 | None:intergenic | 35.0% |
| ! | TTCAAGTTTGCTTGAGTTGT+AGG | + | chr4.4:8239008-8239027 | MS.gene49688:intron | 35.0% |
| ! | TTGTCAAATAGCAGCTTTAG+CGG | + | chr4.4:8240276-8240295 | MS.gene49688:intron | 35.0% |
| !! | GAAACTTCATCACTGATTCA+TGG | + | chr4.4:8239133-8239152 | MS.gene49688:intron | 35.0% |
| !! | TTTTGTTTGTATAGTGGAGG+TGG | + | chr4.4:8240839-8240858 | MS.gene49688:intron | 35.0% |
| !!! | ACTCTGAAACCATTTTGTTG+TGG | - | chr4.4:8238869-8238888 | None:intergenic | 35.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr4.4:8239069-8239088 | MS.gene49688:intron | 35.0% |
| AAAATGGACAGCATTGTGAG+GGG | - | chr4.4:8242197-8242216 | None:intergenic | 40.0% | |
| AAACTCAAAGACACCATGAC+AGG | - | chr4.4:8239678-8239697 | None:intergenic | 40.0% | |
| AACCTCCCAAATAACTGAAC+CGG | + | chr4.4:8239552-8239571 | MS.gene49688:intron | 40.0% | |
| ACTGTTTATGAGCTCCAACA+TGG | - | chr4.4:8241316-8241335 | None:intergenic | 40.0% | |
| ATATCAACTTCATCCGAGAG+TGG | + | chr4.4:8239097-8239116 | MS.gene49688:intron | 40.0% | |
| ATGAGGTAGGAGAAGATTGT+GGG | - | chr4.4:8238230-8238249 | None:intergenic | 40.0% | |
| ATTCTGGGTTCTCTTTGTTC+AGG | + | chr4.4:8238541-8238560 | MS.gene49688:CDS | 40.0% | |
| CGCCTTTCAGTTAAGAAATC+CGG | + | chr4.4:8239973-8239992 | MS.gene49688:CDS | 40.0% | |
| CGTCAACGTCTATTAGACAT+GGG | + | chr4.4:8240031-8240050 | MS.gene49688:CDS | 40.0% | |
| CTTGAGTAGTAATCCACTCA+AGG | + | chr4.4:8240712-8240731 | MS.gene49688:intron | 40.0% | |
| GACCGGATTTCTTAACTGAA+AGG | - | chr4.4:8239978-8239997 | None:intergenic | 40.0% | |
| GATCAAGAACTCCATCTTCT+AGG | - | chr4.4:8241725-8241744 | None:intergenic | 40.0% | |
| GATCTTTCAATCCAACTTCC+TGG | - | chr4.4:8241220-8241239 | None:intergenic | 40.0% | |
| GCGACCAACAATATAGAAGT+TGG | - | chr4.4:8241844-8241863 | None:intergenic | 40.0% | |
| GTTACTCCCCATTGAAATCA+GGG | + | chr4.4:8239215-8239234 | MS.gene49688:intron | 40.0% | |
| TATGAGGTAGGAGAAGATTG+TGG | - | chr4.4:8238231-8238250 | None:intergenic | 40.0% | |
| TCATTGTTCCAGCTGGAAAT+TGG | + | chr4.4:8239828-8239847 | MS.gene49688:CDS | 40.0% | |
| TCGTCAACGTCTATTAGACA+TGG | + | chr4.4:8240030-8240049 | MS.gene49688:CDS | 40.0% | |
| TGAAATTGGAGTCGCGAAAA+CGG | - | chr4.4:8238411-8238430 | None:intergenic | 40.0% | |
| TGAAGTACAATGGCATGCAA+AGG | + | chr4.4:8241800-8241819 | MS.gene49688:CDS | 40.0% | |
| TGAATATTGGGCCATATGGT+TGG | + | chr4.4:8241559-8241578 | MS.gene49688:intron | 40.0% | |
| TGACCCTGATCATGGAAAAA+AGG | + | chr4.4:8241908-8241927 | MS.gene49688:CDS | 40.0% | |
| TGTCTCCGGTTCAGTTATTT+GGG | - | chr4.4:8239560-8239579 | None:intergenic | 40.0% | |
| TGTTACTCCCCATTGAAATC+AGG | + | chr4.4:8239214-8239233 | MS.gene49688:intron | 40.0% | |
| TGTTCATAGGTCCTAGAAGA+TGG | + | chr4.4:8240657-8240676 | MS.gene49688:intron | 40.0% | |
| TGTTGTCGTTGTAGTTTGAG+TGG | - | chr4.4:8241372-8241391 | None:intergenic | 40.0% | |
| TTAACCAGTGTTGTCAATCG+TGG | - | chr4.4:8240356-8240375 | None:intergenic | 40.0% | |
| TTATTGCTTCATCCTGTTGG+AGG | + | chr4.4:8240070-8240089 | MS.gene49688:CDS | 40.0% | |
| TTATTGTTGGGGATGGCAAA+TGG | + | chr4.4:8242251-8242270 | MS.gene49688:intron | 40.0% | |
| TTCAACATGTCGAAACTCAC+TGG | - | chr4.4:8240479-8240498 | None:intergenic | 40.0% | |
| TTGAATTGCAACCACTTCCA+AGG | - | chr4.4:8240423-8240442 | None:intergenic | 40.0% | |
| TTGGCTTATTGGAGGAGATT+TGG | + | chr4.4:8239847-8239866 | MS.gene49688:CDS | 40.0% | |
| TTGTCTCCGGTTCAGTTATT+TGG | - | chr4.4:8239561-8239580 | None:intergenic | 40.0% | |
| ! | ACGTGTAGAAAGCTTTAGCA+CGG | - | chr4.4:8242457-8242476 | None:intergenic | 40.0% |
| ! | CGTTTTCTGCAATCAGATTG+TGG | - | chr4.4:8238378-8238397 | None:intergenic | 40.0% |
| ! | GAAATTGAACTATGACTCGG+AGG | - | chr4.4:8239497-8239516 | None:intergenic | 40.0% |
| ! | TACACGTTTTTGTGCAGATC+CGG | + | chr4.4:8242470-8242489 | MS.gene49688:CDS | 40.0% |
| ! | TGCAATCAGATTGTGGGTTA+GGG | - | chr4.4:8238371-8238390 | None:intergenic | 40.0% |
| !! | ATACTGGTGCTATAGAGTAG+CGG | + | chr4.4:8240203-8240222 | MS.gene49688:intron | 40.0% |
| !! | TGCCAGCTGTTTTATGCAAT+TGG | + | chr4.4:8241486-8241505 | MS.gene49688:intron | 40.0% |
| !! | TGGAAAAAAGGTGCTTAGCA+TGG | + | chr4.4:8241920-8241939 | MS.gene49688:CDS | 40.0% |
| !!! | AGCACCTTTTTTCCATGATC+AGG | - | chr4.4:8241915-8241934 | None:intergenic | 40.0% |
| !!! | GCACCTTTTTTCCATGATCA+GGG | - | chr4.4:8241914-8241933 | None:intergenic | 40.0% |
| AAAGGTGAAGGAACGTTCGT+CGG | - | chr4.4:8238342-8238361 | None:intergenic | 45.0% | |
| AAATGGACAGCATTGTGAGG+GGG | - | chr4.4:8242196-8242215 | None:intergenic | 45.0% | |
| AACACTCAGTTGTCCACTCT+CGG | - | chr4.4:8239113-8239132 | None:intergenic | 45.0% | |
| AACCGTGAAACAAGGTTTGC+CGG | - | chr4.4:8238468-8238487 | None:intergenic | 45.0% | |
| AAGATTGTGGGGACTGATTG+TGG | - | chr4.4:8238218-8238237 | None:intergenic | 45.0% | |
| AAGGCATGACCATTATGGAC+CGG | - | chr4.4:8239995-8240014 | None:intergenic | 45.0% | |
| AAGGTTGAGTCGTATGAGGT+AGG | - | chr4.4:8238243-8238262 | None:intergenic | 45.0% | |
| AATCAACCGGAAAACGACGT+CGG | - | chr4.4:8238295-8238314 | None:intergenic | 45.0% | |
| ACAAGGTTTGCCGGTGAAAT+CGG | - | chr4.4:8238459-8238478 | None:intergenic | 45.0% | |
| ACAATGACCTCCTCAACGTA+AGG | - | chr4.4:8239815-8239834 | None:intergenic | 45.0% | |
| ACCACTTGGTTTACCAAACC+AGG | + | chr4.4:8241344-8241363 | MS.gene49688:intron | 45.0% | |
| ACCTTTGTGAAACCTCCAAC+AGG | - | chr4.4:8240085-8240104 | None:intergenic | 45.0% | |
| ACGATGTTCCGTTAGATGTC+AGG | + | chr4.4:8240107-8240126 | MS.gene49688:CDS | 45.0% | |
| AGATTGTGGGGACTGATTGT+GGG | - | chr4.4:8238217-8238236 | None:intergenic | 45.0% | |
| AGTTTGAGTGGTACCTGGTT+TGG | - | chr4.4:8241360-8241379 | None:intergenic | 45.0% | |
| ATGTTAAGCTTCTCGAGACC+AGG | - | chr4.4:8241948-8241967 | None:intergenic | 45.0% | |
| CAATCCACGATTGACAACAC+TGG | + | chr4.4:8240349-8240368 | MS.gene49688:intron | 45.0% | |
| CATCGCCTATGCATTATGCA+GGG | + | chr4.4:8241772-8241791 | MS.gene49688:CDS | 45.0% | |
| CCAATAAGCCAATTTCCAGC+TGG | - | chr4.4:8239839-8239858 | None:intergenic | 45.0% | |
| CCATGAACTGAGATTGTCTC+CGG | - | chr4.4:8239574-8239593 | None:intergenic | 45.0% | |
| CGAATTTCACCCTTTCTTGC+CGG | + | chr4.4:8238618-8238637 | MS.gene49688:intron | 45.0% | |
| CTGCAATCAGATTGTGGGTT+AGG | - | chr4.4:8238372-8238391 | None:intergenic | 45.0% | |
| GACTTGTATGACCCTGATCA+TGG | + | chr4.4:8241900-8241919 | MS.gene49688:CDS | 45.0% | |
| GCATGCCATTGTACTTCACT+TGG | - | chr4.4:8241798-8241817 | None:intergenic | 45.0% | |
| GGCGCCAACTTCTATATTGT+TGG | + | chr4.4:8241837-8241856 | MS.gene49688:CDS | 45.0% | |
| GTTAGATTGCGGTTTCAACC+TGG | + | chr4.4:8240534-8240553 | MS.gene49688:intron | 45.0% | |
| GTTGTAGTTTGAGTGGTACC+TGG | - | chr4.4:8241365-8241384 | None:intergenic | 45.0% | |
| TACAAGTCCCGTTTCTCAGT+TGG | - | chr4.4:8241888-8241907 | None:intergenic | 45.0% | |
| TACAATGGCATGCAAAGGCA+CGG | + | chr4.4:8241805-8241824 | MS.gene49688:CDS | 45.0% | |
| TCCTGTTGGAGGTTTCACAA+AGG | + | chr4.4:8240081-8240100 | MS.gene49688:CDS | 45.0% | |
| TCCTTCTGAGTCTTGGCTTA+TGG | - | chr4.4:8241464-8241483 | None:intergenic | 45.0% | |
| TGAGGTAGGAGAAGATTGTG+GGG | - | chr4.4:8238229-8238248 | None:intergenic | 45.0% | |
| TGCTCCATCCTGACATCTAA+CGG | - | chr4.4:8240118-8240137 | None:intergenic | 45.0% | |
| TGCTTGCGATTTGCGATTCT+GGG | + | chr4.4:8238526-8238545 | MS.gene49688:CDS | 45.0% | |
| TGGGTCATCCAACTGAGAAA+CGG | + | chr4.4:8241877-8241896 | MS.gene49688:CDS | 45.0% | |
| TGTCCCACCCTGATTTCAAT+GGG | - | chr4.4:8239225-8239244 | None:intergenic | 45.0% | |
| TGTTCCGTTAGATGTCAGGA+TGG | + | chr4.4:8240111-8240130 | MS.gene49688:CDS | 45.0% | |
| TTGCTACTGCACTGTATTGC+CGG | - | chr4.4:8238658-8238677 | None:intergenic | 45.0% | |
| TTTCGCGACTCCAATTTCAC+CGG | + | chr4.4:8238412-8238431 | MS.gene49688:CDS | 45.0% | |
| ! | AGAAAGCTTTAGCACGGCTA+GGG | - | chr4.4:8242451-8242470 | None:intergenic | 45.0% |
| ! | CCAGCTGGAAATTGGCTTAT+TGG | + | chr4.4:8239836-8239855 | MS.gene49688:CDS | 45.0% |
| ! | GCTGGAAATTGGCTTATTGG+AGG | + | chr4.4:8239839-8239858 | MS.gene49688:CDS | 45.0% |
| ! | GGTCTTGTCAGTTTGATGTC+CGG | - | chr4.4:8239476-8239495 | None:intergenic | 45.0% |
| ! | GTTTGTATAGTGGAGGTGGA+GGG | + | chr4.4:8240843-8240862 | MS.gene49688:intron | 45.0% |
| ! | TAGAAAGCTTTAGCACGGCT+AGG | - | chr4.4:8242452-8242471 | None:intergenic | 45.0% |
| ! | TGTTTGTATAGTGGAGGTGG+AGG | + | chr4.4:8240842-8240861 | MS.gene49688:intron | 45.0% |
| !! | ACCTGGTTTGGTAAACCAAG+TGG | - | chr4.4:8241348-8241367 | None:intergenic | 45.0% |
| !! | CGTCTTGTTTGCAACCATGT+TGG | + | chr4.4:8241299-8241318 | MS.gene49688:intron | 45.0% |
| !! | CGTTGAAGTGCTGTTTGACT+TGG | - | chr4.4:8242067-8242086 | None:intergenic | 45.0% |
| !! | GAGGGAAAGTGACTTGTTCA+AGG | + | chr4.4:8240861-8240880 | MS.gene49688:intron | 45.0% |
| !! | GTCGTTTTCCGGTTGATTCA+CGG | + | chr4.4:8238297-8238316 | MS.gene49688:CDS | 45.0% |
| !! | TCACTGATTCATGGTGAGAG+TGG | + | chr4.4:8239142-8239161 | MS.gene49688:intron | 45.0% |
| !!! | CGTGCTAGCCTTTTCTTTGA+AGG | - | chr4.4:8241416-8241435 | None:intergenic | 45.0% |
| ACCTAGGCGCTAATCGCAAA+CGG | - | chr4.4:8238594-8238613 | None:intergenic | 50.0% | |
| ACTCCCCATTGAAATCAGGG+TGG | + | chr4.4:8239218-8239237 | MS.gene49688:intron | 50.0% | |
| AGGATTGCCTTACGTTGAGG+AGG | + | chr4.4:8239805-8239824 | MS.gene49688:CDS | 50.0% | |
| AGTTGGATGACCCATACCAG+CGG | - | chr4.4:8241871-8241890 | None:intergenic | 50.0% | |
| CAGAATCGCAAATCGCAAGC+AGG | - | chr4.4:8238527-8238546 | None:intergenic | 50.0% | |
| CAGGATGGAGCAACATAGCA+AGG | + | chr4.4:8240126-8240145 | MS.gene49688:CDS | 50.0% | |
| CAGGGCCAAGTGAAGTACAA+TGG | + | chr4.4:8241790-8241809 | MS.gene49688:CDS | 50.0% | |
| CCATCGCCTATGCATTATGC+AGG | + | chr4.4:8241771-8241790 | MS.gene49688:CDS | 50.0% | |
| CCGGAGACAATCTCAGTTCA+TGG | + | chr4.4:8239571-8239590 | MS.gene49688:intron | 50.0% | |
| CCTGCATAATGCATAGGCGA+TGG | - | chr4.4:8241774-8241793 | None:intergenic | 50.0% | |
| CTCCCCATTGAAATCAGGGT+GGG | + | chr4.4:8239219-8239238 | MS.gene49688:intron | 50.0% | |
| CTCCGGTTCAGTTATTTGGG+AGG | - | chr4.4:8239557-8239576 | None:intergenic | 50.0% | |
| CTGCTTGCGATTTGCGATTC+TGG | + | chr4.4:8238525-8238544 | MS.gene49688:CDS | 50.0% | |
| CTTGGCCCTGCATAATGCAT+AGG | - | chr4.4:8241780-8241799 | None:intergenic | 50.0% | |
| GAGCAAGGTTGAGTCGTATG+AGG | - | chr4.4:8238247-8238266 | None:intergenic | 50.0% | |
| GATTGTGGGGACTGATTGTG+GGG | - | chr4.4:8238216-8238235 | None:intergenic | 50.0% | |
| GCCATAAGCCAAGACTCAGA+AGG | + | chr4.4:8241460-8241479 | MS.gene49688:intron | 50.0% | |
| GGAAAACGACGTCGGAGTTA+CGG | - | chr4.4:8238287-8238306 | None:intergenic | 50.0% | |
| GGAACAGAAGCAACGCAATC+AGG | - | chr4.4:8241604-8241623 | None:intergenic | 50.0% | |
| GGAACGTTCGTCGGTGAAAT+CGG | - | chr4.4:8238333-8238352 | None:intergenic | 50.0% | |
| GGGTCATCCAACTGAGAAAC+GGG | + | chr4.4:8241878-8241897 | MS.gene49688:CDS | 50.0% | |
| GGGTGAAATTCGTGCAACCT+AGG | - | chr4.4:8238610-8238629 | None:intergenic | 50.0% | |
| GGTGGCAGCTTATGACACTA+AGG | + | chr4.4:8242403-8242422 | MS.gene49688:intron | 50.0% | |
| GTCCCACCCTGATTTCAATG+GGG | - | chr4.4:8239224-8239243 | None:intergenic | 50.0% | |
| GTGTCCCACCCTGATTTCAA+TGG | - | chr4.4:8239226-8239245 | None:intergenic | 50.0% | |
| TACGTCAGACCGGCAAGAAA+GGG | - | chr4.4:8238630-8238649 | None:intergenic | 50.0% | |
| TCCAGGATTGCCTTACGTTG+AGG | + | chr4.4:8239802-8239821 | MS.gene49688:CDS | 50.0% | |
| TCCTCAACGTAAGGCAATCC+TGG | - | chr4.4:8239806-8239825 | None:intergenic | 50.0% | |
| TGGCACATCCTTCTGAGTCT+TGG | - | chr4.4:8241471-8241490 | None:intergenic | 50.0% | |
| TTAGGGTCGCACAAAGGTGA+AGG | - | chr4.4:8238354-8238373 | None:intergenic | 50.0% | |
| ! | ACGTTTTTGTGCAGATCCGG+AGG | + | chr4.4:8242473-8242492 | MS.gene49688:CDS | 50.0% |
| ! | CAATTTCACCGGCTACGTCA+CGG | + | chr4.4:8238423-8238442 | MS.gene49688:CDS | 50.0% |
| ! | CACCGGCAAACCTTGTTTCA+CGG | + | chr4.4:8238463-8238482 | MS.gene49688:CDS | 50.0% |
| ! | GCAAAGGCACGGATAAATGC+AGG | + | chr4.4:8241816-8241835 | MS.gene49688:CDS | 50.0% |
| !! | GTAACTCCGACGTCGTTTTC+CGG | + | chr4.4:8238286-8238305 | MS.gene49688:CDS | 50.0% |
| !! | GTTTTCCGGTTGATTCACGG+CGG | + | chr4.4:8238300-8238319 | MS.gene49688:CDS | 50.0% |
| !! | TTTTCCGGTTGATTCACGGC+GGG | + | chr4.4:8238301-8238320 | MS.gene49688:CDS | 50.0% |
| AAACGACGTCGGAGTTACGG+AGG | - | chr4.4:8238284-8238303 | None:intergenic | 55.0% | |
| ACCTGGGAAACAACTGCTCC+AGG | + | chr4.4:8239785-8239804 | MS.gene49688:CDS | 55.0% | |
| CAATCCCGCCGTGAATCAAC+CGG | - | chr4.4:8238308-8238327 | None:intergenic | 55.0% | |
| CAGCGAGCAACCGTGAAACA+AGG | - | chr4.4:8238476-8238495 | None:intergenic | 55.0% | |
| CGGAGTTACGGAGGTTATGG+TGG | - | chr4.4:8238275-8238294 | None:intergenic | 55.0% | |
| CGTCGGAGTTACGGAGGTTA+TGG | - | chr4.4:8238278-8238297 | None:intergenic | 55.0% | |
| CGTGACGTAGCCGGTGAAAT+TGG | - | chr4.4:8238425-8238444 | None:intergenic | 55.0% | |
| CTACGTCAGACCGGCAAGAA+AGG | - | chr4.4:8238631-8238650 | None:intergenic | 55.0% | |
| GAGGAGGTCATTGTTCCAGC+TGG | + | chr4.4:8239821-8239840 | MS.gene49688:CDS | 55.0% | |
| GCCGGAAAACTACGTCAGAC+CGG | - | chr4.4:8238640-8238659 | None:intergenic | 55.0% | |
| GCTAATCGCAAACGGCAAGC+AGG | - | chr4.4:8238586-8238605 | None:intergenic | 55.0% | |
| GTTGGATGACCCATACCAGC+GGG | - | chr4.4:8241870-8241889 | None:intergenic | 55.0% | |
| ! | AAGGTGCTTAGCATGGCTCC+TGG | + | chr4.4:8241927-8241946 | MS.gene49688:CDS | 55.0% |
| ! | GCCGGTCTGACGTAGTTTTC+CGG | + | chr4.4:8238636-8238655 | MS.gene49688:intron | 55.0% |
| ! | TCCTGGAGCAGTTGTTTCCC+AGG | - | chr4.4:8239789-8239808 | None:intergenic | 55.0% |
| !! | CCTGATTGCGCCGATTTCAC+CGG | + | chr4.4:8238446-8238465 | MS.gene49688:CDS | 55.0% |
| !! | TGTGGGTTAGGGTCGCACAA+AGG | - | chr4.4:8238360-8238379 | None:intergenic | 55.0% |
| ATTGTTGGTCGCGATCCCGC+TGG | + | chr4.4:8241852-8241871 | MS.gene49688:CDS | 60.0% | |
| CAATCAGGCCGTGACGTAGC+CGG | - | chr4.4:8238434-8238453 | None:intergenic | 60.0% | |
| CCGGTGAAATCGGCGCAATC+AGG | - | chr4.4:8238449-8238468 | None:intergenic | 60.0% | |
| GCCGTTTGCGATTAGCGCCT+AGG | + | chr4.4:8238590-8238609 | MS.gene49688:intron | 60.0% | |
| GGGACTGATTGTGGGGTCTG+AGG | - | chr4.4:8238209-8238228 | None:intergenic | 60.0% | |
| ! | GTTATGGTGGCGCGTGAGCA+AGG | - | chr4.4:8238262-8238281 | None:intergenic | 60.0% |
| GGTCGCGATCCCGCTGGTAT+GGG | + | chr4.4:8241858-8241877 | MS.gene49688:CDS | 65.0% | |
| TGGTCGCGATCCCGCTGGTA+TGG | + | chr4.4:8241857-8241876 | MS.gene49688:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 8237989 | 8242502 | 8237989 | ID=MS.gene49688 |
| chr4.4 | mRNA | 8237989 | 8242502 | 8237989 | ID=MS.gene49688.t1;Parent=MS.gene49688 |
| chr4.4 | exon | 8237989 | 8238008 | 8237989 | ID=MS.gene49688.t1.exon1;Parent=MS.gene49688.t1 |
| chr4.4 | CDS | 8237989 | 8238008 | 8237989 | ID=cds.MS.gene49688.t1;Parent=MS.gene49688.t1 |
| chr4.4 | exon | 8238212 | 8238562 | 8238212 | ID=MS.gene49688.t1.exon2;Parent=MS.gene49688.t1 |
| chr4.4 | CDS | 8238212 | 8238562 | 8238212 | ID=cds.MS.gene49688.t1;Parent=MS.gene49688.t1 |
| chr4.4 | exon | 8239742 | 8240147 | 8239742 | ID=MS.gene49688.t1.exon3;Parent=MS.gene49688.t1 |
| chr4.4 | CDS | 8239742 | 8240147 | 8239742 | ID=cds.MS.gene49688.t1;Parent=MS.gene49688.t1 |
| chr4.4 | exon | 8241720 | 8241980 | 8241720 | ID=MS.gene49688.t1.exon4;Parent=MS.gene49688.t1 |
| chr4.4 | CDS | 8241720 | 8241980 | 8241720 | ID=cds.MS.gene49688.t1;Parent=MS.gene49688.t1 |
| chr4.4 | exon | 8242404 | 8242502 | 8242404 | ID=MS.gene49688.t1.exon5;Parent=MS.gene49688.t1 |
| chr4.4 | CDS | 8242404 | 8242502 | 8242404 | ID=cds.MS.gene49688.t1;Parent=MS.gene49688.t1 |
| Gene Sequence |
| Protein sequence |
