Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50546.t1 | XP_003590603.2 | 98.3 | 120 | 2 | 0 | 35 | 154 | 46 | 165 | 2.00E-57 | 231.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50546.t1 | G7IDL8 | 98.3 | 120 | 2 | 0 | 35 | 154 | 46 | 165 | 1.5e-57 | 231.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene50546 | 0.811486 | 6.84E-51 | -1.69E-46 |
| MS.gene049669 | MS.gene50546 | 0.827092 | 1.89E-54 | -1.69E-46 |
| MS.gene049825 | MS.gene50546 | 0.846041 | 2.79E-59 | -1.69E-46 |
| MS.gene049873 | MS.gene50546 | 0.835892 | 1.29E-56 | -1.69E-46 |
| MS.gene050026 | MS.gene50546 | 0.81499 | 1.16E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene50546 | 0.80171 | 7.92E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene50546 | 0.816993 | 4.15E-52 | -1.69E-46 |
| MS.gene050355 | MS.gene50546 | 0.811085 | 8.35E-51 | -1.69E-46 |
| MS.gene050799 | MS.gene50546 | 0.801946 | 7.08E-49 | -1.69E-46 |
| MS.gene051678 | MS.gene50546 | 0.808322 | 3.28E-50 | -1.69E-46 |
| MS.gene052108 | MS.gene50546 | 0.812397 | 4.33E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene50546 | 0.812409 | 4.30E-51 | -1.69E-46 |
| MS.gene052208 | MS.gene50546 | 0.803608 | 3.21E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene50546 | -0.802798 | 4.73E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene50546 | -0.834064 | 3.72E-56 | -1.69E-46 |
| MS.gene052376 | MS.gene50546 | 0.803703 | 3.07E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene50546 | 0.833939 | 4.00E-56 | -1.69E-46 |
| MS.gene052582 | MS.gene50546 | 0.807702 | 4.44E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene50546 | 0.808048 | 3.75E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene50546 | 0.809518 | 1.82E-50 | -1.69E-46 |
| MS.gene052685 | MS.gene50546 | 0.805164 | 1.52E-49 | -1.69E-46 |
| MS.gene052926 | MS.gene50546 | 0.830349 | 3.09E-55 | -1.69E-46 |
| MS.gene052954 | MS.gene50546 | 0.810041 | 1.40E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene50546 | 0.827389 | 1.61E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene50546 | 0.802586 | 5.23E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene50546 | 0.828394 | 9.21E-55 | -1.69E-46 |
| MS.gene05365 | MS.gene50546 | 0.807927 | 3.98E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene50546 | 0.837342 | 5.50E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene50546 | 0.806369 | 8.51E-50 | -1.69E-46 |
| MS.gene05548 | MS.gene50546 | 0.81964 | 1.04E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene50546 | 0.809933 | 1.48E-50 | -1.69E-46 |
| MS.gene055808 | MS.gene50546 | 0.80633 | 8.67E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene50546 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene50546 | 0.801576 | 8.44E-49 | -1.69E-46 |
| MS.gene056091 | MS.gene50546 | 0.853798 | 1.88E-61 | -1.69E-46 |
| MS.gene056506 | MS.gene50546 | 0.827345 | 1.65E-54 | -1.69E-46 |
| MS.gene05659 | MS.gene50546 | 0.801171 | 1.02E-48 | -1.69E-46 |
| MS.gene057026 | MS.gene50546 | 0.837444 | 5.18E-57 | -1.69E-46 |
| MS.gene057027 | MS.gene50546 | 0.821479 | 3.95E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene50546 | 0.804663 | 1.94E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene50546 | 0.802942 | 4.42E-49 | -1.69E-46 |
| MS.gene057555 | MS.gene50546 | 0.811478 | 6.86E-51 | -1.69E-46 |
| MS.gene05795 | MS.gene50546 | 0.801001 | 1.11E-48 | -1.69E-46 |
| MS.gene058037 | MS.gene50546 | 0.85702 | 2.17E-62 | -1.69E-46 |
| MS.gene058498 | MS.gene50546 | 0.824823 | 6.55E-54 | -1.69E-46 |
| MS.gene058500 | MS.gene50546 | 0.823345 | 1.46E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene50546 | 0.807732 | 4.38E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene50546 | 0.803216 | 3.88E-49 | -1.69E-46 |
| MS.gene05953 | MS.gene50546 | 0.825342 | 4.94E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene50546 | 0.857636 | 1.43E-62 | -1.69E-46 |
| MS.gene059789 | MS.gene50546 | 0.80005 | 1.73E-48 | -1.69E-46 |
| MS.gene059830 | MS.gene50546 | 0.815638 | 8.34E-52 | -1.69E-46 |
| MS.gene059935 | MS.gene50546 | 0.808014 | 3.81E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene50546 | 0.808813 | 2.57E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene50546 | 0.802649 | 5.08E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene50546 | 0.861425 | 1.04E-63 | -1.69E-46 |
| MS.gene060586 | MS.gene50546 | 0.831984 | 1.22E-55 | -1.69E-46 |
| MS.gene060879 | MS.gene50546 | 0.828003 | 1.14E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene50546 | -0.848903 | 4.56E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50546.t1 | MTR_1g071630 | 91.925 | 161 | 6 | 1 | 1 | 154 | 5 | 165 | 8.31e-84 | 243 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50546.t1 | AT4G04614 | 56.589 | 129 | 51 | 3 | 27 | 154 | 52 | 176 | 9.27e-42 | 137 |
| MS.gene50546.t1 | AT4G04614 | 56.589 | 129 | 51 | 3 | 27 | 154 | 52 | 176 | 9.27e-42 | 137 |
Find 35 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTTGTGTCATCTTCTT+TGG | 0.118453 | 1.2:-54733665 | None:intergenic |
| TTCTTTGTGTCATCTTCTTT+GGG | 0.233840 | 1.2:-54733664 | None:intergenic |
| AGGGACAATGGAGTTTATTC+TGG | 0.281268 | 1.2:+54733919 | MS.gene50546:CDS |
| CTGAAGCGATACGGCTATAA+AGG | 0.293708 | 1.2:+54733613 | MS.gene50546:CDS |
| TAAATCTACAAAGCAGAAAA+AGG | 0.315518 | 1.2:+54733570 | MS.gene50546:CDS |
| AGGCGGACCTTCAGTCTTAA+AGG | 0.331123 | 1.2:+54733633 | MS.gene50546:CDS |
| TCTGAAAATGATAGTGAAAC+TGG | 0.358513 | 1.2:+54732470 | MS.gene50546:CDS |
| CTCAGAAGGAAAAGAAGAAA+AGG | 0.400791 | 1.2:+54733839 | MS.gene50546:CDS |
| GGGATCTTGGTCAAGCAAGC+AGG | 0.419342 | 1.2:+54733860 | MS.gene50546:CDS |
| GAAAAGAAGAAAAGGGATCT+TGG | 0.429119 | 1.2:+54733847 | MS.gene50546:CDS |
| TTCAGAGCTTCAAAGTCAAT+TGG | 0.442566 | 1.2:-54733595 | None:intergenic |
| AAGATGACACAAAGAAAGAT+TGG | 0.453949 | 1.2:+54733671 | MS.gene50546:CDS |
| GTGTCATCTTCTTTGGGTGG+AGG | 0.460313 | 1.2:-54733658 | None:intergenic |
| CAGTTGGCATTTGCTCTCCT+AGG | 0.493250 | 1.2:-54733780 | None:intergenic |
| ATTATGTTGAAGAAGAGAAA+AGG | 0.499802 | 1.2:+54733890 | MS.gene50546:CDS |
| GGATCTTGGTCAAGCAAGCA+GGG | 0.515240 | 1.2:+54733861 | MS.gene50546:CDS |
| TTTGTGTCATCTTCTTTGGG+TGG | 0.516808 | 1.2:-54733661 | None:intergenic |
| TCAGAAGGAAAAGAAGAAAA+GGG | 0.533332 | 1.2:+54733840 | MS.gene50546:CDS |
| AGAAGAGAAAAGGCTGTTGA+GGG | 0.535745 | 1.2:+54733900 | MS.gene50546:CDS |
| TCATTCCTAGTCAGAACAGT+TGG | 0.556209 | 1.2:-54733796 | None:intergenic |
| ACACAAAGAAAGATTGGTCC+TGG | 0.556354 | 1.2:+54733677 | MS.gene50546:CDS |
| ACAAGAGAGGCTCTTTCCCT+AGG | 0.557271 | 1.2:+54733763 | MS.gene50546:CDS |
| AAAAGGCTGTTGAGGGACAA+TGG | 0.563867 | 1.2:+54733907 | MS.gene50546:CDS |
| TTTGAAGCTCTGAAGCGATA+CGG | 0.565621 | 1.2:+54733604 | MS.gene50546:CDS |
| TTGGTCCTGGTCCAGTGGAA+AGG | 0.567873 | 1.2:+54733690 | MS.gene50546:CDS |
| AGTTGGCATTTGCTCTCCTA+GGG | 0.578927 | 1.2:-54733779 | None:intergenic |
| AAGAAGAGAAAAGGCTGTTG+AGG | 0.580825 | 1.2:+54733899 | MS.gene50546:CDS |
| AAAGATTGGTCCTGGTCCAG+TGG | 0.594354 | 1.2:+54733685 | MS.gene50546:CDS |
| GGAGGTACCTTTAAGACTGA+AGG | 0.597747 | 1.2:-54733640 | None:intergenic |
| AAATGCCAACTGTTCTGACT+AGG | 0.603014 | 1.2:+54733791 | MS.gene50546:CDS |
| CTATGAAGAGGACAATGCCA+TGG | 0.617111 | 1.2:+54732417 | None:intergenic |
| ATCTTGGTCAAGCAAGCAGG+GGG | 0.627378 | 1.2:+54733863 | MS.gene50546:CDS |
| GATCTTGGTCAAGCAAGCAG+GGG | 0.638659 | 1.2:+54733862 | MS.gene50546:CDS |
| AGAGAGAAAGAAAACAAGAG+AGG | 0.657420 | 1.2:+54733750 | MS.gene50546:CDS |
| AAGCGATACGGCTATAAAGG+CGG | 0.718806 | 1.2:+54733616 | MS.gene50546:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTAAATTAGAATATCG+GGG | + | chr1.2:54733329-54733348 | MS.gene50546:intron | 20.0% |
| !! | AAGAACTATTATAGCATTAT+CGG | - | chr1.2:54733240-54733259 | None:intergenic | 20.0% |
| !! | AGACAATAATATATTGCTAA+CGG | - | chr1.2:54733366-54733385 | None:intergenic | 20.0% |
| !! | ATAATCACATTAAGAAAGAA+CGG | - | chr1.2:54732819-54732838 | None:intergenic | 20.0% |
| !! | ATATAACTCAACATAGTTAT+AGG | - | chr1.2:54732532-54732551 | None:intergenic | 20.0% |
| !! | ATATTCTAATTTACATTTCC+TGG | - | chr1.2:54733327-54733346 | None:intergenic | 20.0% |
| !! | GAAATCTAATGTGATAAATT+AGG | + | chr1.2:54732972-54732991 | MS.gene50546:intron | 20.0% |
| !! | GAAATGTAAATTAGAATATC+GGG | + | chr1.2:54733328-54733347 | MS.gene50546:intron | 20.0% |
| !! | GGAAATGTAAATTAGAATAT+CGG | + | chr1.2:54733327-54733346 | MS.gene50546:intron | 20.0% |
| !!! | ATTGTTTTAGATTTTGTTGT+TGG | + | chr1.2:54733122-54733141 | MS.gene50546:intron | 20.0% |
| !!! | TTGTTTTAGATTTTGTTGTT+GGG | + | chr1.2:54733123-54733142 | MS.gene50546:intron | 20.0% |
| ! | AAAACACAAACACTAATTGT+GGG | - | chr1.2:54732852-54732871 | None:intergenic | 25.0% |
| ! | AGTGATAGCTGATAATATTA+TGG | + | chr1.2:54733023-54733042 | MS.gene50546:intron | 25.0% |
| ! | ATTATGTTGAAGAAGAGAAA+AGG | + | chr1.2:54733890-54733909 | MS.gene50546:CDS | 25.0% |
| ! | TAAATCTACAAAGCAGAAAA+AGG | + | chr1.2:54733570-54733589 | MS.gene50546:CDS | 25.0% |
| ! | TGACAAGTGAAAATAGTATT+TGG | + | chr1.2:54732756-54732775 | MS.gene50546:intron | 25.0% |
| ! | TGTTGAGTTATATGTTTAAG+TGG | + | chr1.2:54732539-54732558 | MS.gene50546:intron | 25.0% |
| !! | ACAATTAGTGTTTGTGTTTT+GGG | + | chr1.2:54732852-54732871 | MS.gene50546:intron | 25.0% |
| !! | ATTATCTGAAGATCATTTTG+TGG | + | chr1.2:54732947-54732966 | MS.gene50546:intron | 25.0% |
| !!! | ACACTTTTAATCTGAAGTAT+CGG | + | chr1.2:54732719-54732738 | MS.gene50546:intron | 25.0% |
| !!! | CAAAAAATCCAAAGGTATTT+TGG | + | chr1.2:54732496-54732515 | MS.gene50546:intron | 25.0% |
| !!! | CAAAATACCTTTGGATTTTT+TGG | - | chr1.2:54732498-54732517 | None:intergenic | 25.0% |
| !!! | TGTTTTAGATTTTGTTGTTG+GGG | + | chr1.2:54733124-54733143 | MS.gene50546:intron | 25.0% |
| AAATGTACTTACTTGAACCT+AGG | + | chr1.2:54732781-54732800 | MS.gene50546:intron | 30.0% | |
| AAGATGACACAAAGAAAGAT+TGG | + | chr1.2:54733671-54733690 | MS.gene50546:CDS | 30.0% | |
| ACCAATAACAAGGAAATACA+AGG | - | chr1.2:54733091-54733110 | None:intergenic | 30.0% | |
| ACTAGTAACTAAGCAACATA+TGG | - | chr1.2:54733527-54733546 | None:intergenic | 30.0% | |
| ATCACAATACACCAATAACA+AGG | - | chr1.2:54733101-54733120 | None:intergenic | 30.0% | |
| ATGTGATAAATTAGGAGTTC+TGG | + | chr1.2:54732980-54732999 | MS.gene50546:intron | 30.0% | |
| CAAAACACAAACACTAATTG+TGG | - | chr1.2:54732853-54732872 | None:intergenic | 30.0% | |
| CAATAATATATTGCTAACGG+AGG | - | chr1.2:54733363-54733382 | None:intergenic | 30.0% | |
| GATACTTCAGATTAAAAGTG+TGG | - | chr1.2:54732720-54732739 | None:intergenic | 30.0% | |
| GATTTATGTAACACTAGCAA+CGG | + | chr1.2:54732605-54732624 | MS.gene50546:intron | 30.0% | |
| GCTAATTAAGTCACACAATA+TGG | - | chr1.2:54733397-54733416 | None:intergenic | 30.0% | |
| TCAGAAGGAAAAGAAGAAAA+GGG | + | chr1.2:54733840-54733859 | MS.gene50546:CDS | 30.0% | |
| TTCTTTGTGTCATCTTCTTT+GGG | - | chr1.2:54733667-54733686 | None:intergenic | 30.0% | |
| TTTCTTTGTGTCATCTTCTT+TGG | - | chr1.2:54733668-54733687 | None:intergenic | 30.0% | |
| ! | AACTAGAGTAGATATTTTCC+AGG | + | chr1.2:54733306-54733325 | MS.gene50546:intron | 30.0% |
| ! | CACAATTAGTGTTTGTGTTT+TGG | + | chr1.2:54732851-54732870 | MS.gene50546:intron | 30.0% |
| ! | TCCTTGTATTTCCTTGTTAT+TGG | + | chr1.2:54733087-54733106 | MS.gene50546:intron | 30.0% |
| ! | TCTGAAAATGATAGTGAAAC+TGG | + | chr1.2:54732470-54732489 | MS.gene50546:CDS | 30.0% |
| !! | AAAATCTCATCTCTAGAATG+TGG | + | chr1.2:54732886-54732905 | MS.gene50546:intron | 30.0% |
| AAGGAATCTCTTCTACAATG+GGG | - | chr1.2:54733072-54733091 | None:intergenic | 35.0% | |
| AATCTAATCGTGTGTAGTGT+TGG | + | chr1.2:54732684-54732703 | MS.gene50546:intron | 35.0% | |
| ACAAGGAATCTCTTCTACAA+TGG | - | chr1.2:54733074-54733093 | None:intergenic | 35.0% | |
| AGAGAGAAAGAAAACAAGAG+AGG | + | chr1.2:54733750-54733769 | MS.gene50546:CDS | 35.0% | |
| AGATGGTTCATAAACAGTTG+TGG | + | chr1.2:54733187-54733206 | MS.gene50546:intron | 35.0% | |
| AGTATGAAGCCATCATGATA+CGG | - | chr1.2:54733455-54733474 | None:intergenic | 35.0% | |
| CAAGAGTTTCTTGACTTTCA+AGG | + | chr1.2:54733282-54733301 | MS.gene50546:intron | 35.0% | |
| CAAGGAATCTCTTCTACAAT+GGG | - | chr1.2:54733073-54733092 | None:intergenic | 35.0% | |
| CTCAGAAGGAAAAGAAGAAA+AGG | + | chr1.2:54733839-54733858 | MS.gene50546:CDS | 35.0% | |
| GAAAAGAAGAAAAGGGATCT+TGG | + | chr1.2:54733847-54733866 | MS.gene50546:CDS | 35.0% | |
| TTAACTTACTTCATGTCTGC+AGG | + | chr1.2:54733547-54733566 | MS.gene50546:intron | 35.0% | |
| TTCAGAGCTTCAAAGTCAAT+TGG | - | chr1.2:54733598-54733617 | None:intergenic | 35.0% | |
| ! | ATAGCATTATCGGCTGATTT+AGG | - | chr1.2:54733230-54733249 | None:intergenic | 35.0% |
| ! | GAATCTTTCCTTTTCTCAGA+AGG | + | chr1.2:54733825-54733844 | MS.gene50546:CDS | 35.0% |
| !! | CTTCTTTTCCTTCTGAGAAA+AGG | - | chr1.2:54733836-54733855 | None:intergenic | 35.0% |
| !! | TTCTGAAATCCGTATCATGA+TGG | + | chr1.2:54733443-54733462 | MS.gene50546:intron | 35.0% |
| AAATGCCAACTGTTCTGACT+AGG | + | chr1.2:54733791-54733810 | MS.gene50546:CDS | 40.0% | |
| AACTAAGCAACATATGGCAG+TGG | - | chr1.2:54733521-54733540 | None:intergenic | 40.0% | |
| AAGAAGAGAAAAGGCTGTTG+AGG | + | chr1.2:54733899-54733918 | MS.gene50546:CDS | 40.0% | |
| ACTAACTGAAGGTCAAGATG+GGG | - | chr1.2:54733159-54733178 | None:intergenic | 40.0% | |
| ACTGGAGCCAAAAAATCCAA+AGG | + | chr1.2:54732488-54732507 | MS.gene50546:CDS | 40.0% | |
| AGAAGAGAAAAGGCTGTTGA+GGG | + | chr1.2:54733900-54733919 | MS.gene50546:CDS | 40.0% | |
| AGGGACAATGGAGTTTATTC+TGG | + | chr1.2:54733919-54733938 | MS.gene50546:CDS | 40.0% | |
| CACTAACTGAAGGTCAAGAT+GGG | - | chr1.2:54733160-54733179 | None:intergenic | 40.0% | |
| CTTGAACCTAGGATGTTGAT+AGG | + | chr1.2:54732792-54732811 | MS.gene50546:intron | 40.0% | |
| GATGCACACCAAAATACCTT+TGG | - | chr1.2:54732507-54732526 | None:intergenic | 40.0% | |
| TCAGTTAGTGCAATGCAAGA+TGG | + | chr1.2:54733170-54733189 | MS.gene50546:intron | 40.0% | |
| TCATCATCATCATCACTCCA+TGG | - | chr1.2:54732437-54732456 | None:intergenic | 40.0% | |
| TCATTCCTAGTCAGAACAGT+TGG | - | chr1.2:54733799-54733818 | None:intergenic | 40.0% | |
| TCTTGCATTGCACTAACTGA+AGG | - | chr1.2:54733170-54733189 | None:intergenic | 40.0% | |
| TTCAGATAATTGCAACGCAG+AGG | - | chr1.2:54732937-54732956 | None:intergenic | 40.0% | |
| TTTGTGTCATCTTCTTTGGG+TGG | - | chr1.2:54733664-54733683 | None:intergenic | 40.0% | |
| ! | ACACAAAGAAAGATTGGTCC+TGG | + | chr1.2:54733677-54733696 | MS.gene50546:CDS | 40.0% |
| !! | TTTGAAGCTCTGAAGCGATA+CGG | + | chr1.2:54733604-54733623 | MS.gene50546:CDS | 40.0% |
| AAAAGGCTGTTGAGGGACAA+TGG | + | chr1.2:54733907-54733926 | MS.gene50546:CDS | 45.0% | |
| AAAGGAAAAACGCGTCGAGA+AGG | + | chr1.2:54733708-54733727 | MS.gene50546:CDS | 45.0% | |
| AACGCAGAGGTTTCATACCT+TGG | - | chr1.2:54732924-54732943 | None:intergenic | 45.0% | |
| AACGGACCTATCAACATCCT+AGG | - | chr1.2:54732801-54732820 | None:intergenic | 45.0% | |
| AAGCGATACGGCTATAAAGG+CGG | + | chr1.2:54733616-54733635 | MS.gene50546:CDS | 45.0% | |
| AGTTGGCATTTGCTCTCCTA+GGG | - | chr1.2:54733782-54733801 | None:intergenic | 45.0% | |
| CTGAAGCGATACGGCTATAA+AGG | + | chr1.2:54733613-54733632 | MS.gene50546:CDS | 45.0% | |
| GCACTAACTGAAGGTCAAGA+TGG | - | chr1.2:54733161-54733180 | None:intergenic | 45.0% | |
| TGACACTGACACTTCGATGT+TGG | + | chr1.2:54732634-54732653 | MS.gene50546:intron | 45.0% | |
| ! | TTTTTCCTTTCCACTGGACC+AGG | - | chr1.2:54733698-54733717 | None:intergenic | 45.0% |
| !! | GGAGGTACCTTTAAGACTGA+AGG | - | chr1.2:54733643-54733662 | None:intergenic | 45.0% |
| !! | TCGTGTGTAGTGTTGGTGTA+CGG | + | chr1.2:54732691-54732710 | MS.gene50546:intron | 45.0% |
| ACAAGAGAGGCTCTTTCCCT+AGG | + | chr1.2:54733763-54733782 | MS.gene50546:CDS | 50.0% | |
| AGGCGGACCTTCAGTCTTAA+AGG | + | chr1.2:54733633-54733652 | MS.gene50546:CDS | 50.0% | |
| ATCTTGGTCAAGCAAGCAGG+GGG | + | chr1.2:54733863-54733882 | MS.gene50546:CDS | 50.0% | |
| CAGTTGGCATTTGCTCTCCT+AGG | - | chr1.2:54733783-54733802 | None:intergenic | 50.0% | |
| GATCTTGGTCAAGCAAGCAG+GGG | + | chr1.2:54733862-54733881 | MS.gene50546:CDS | 50.0% | |
| GGATCTTGGTCAAGCAAGCA+GGG | + | chr1.2:54733861-54733880 | MS.gene50546:CDS | 50.0% | |
| GTGTCATCTTCTTTGGGTGG+AGG | - | chr1.2:54733661-54733680 | None:intergenic | 50.0% | |
| ! | AAAGATTGGTCCTGGTCCAG+TGG | + | chr1.2:54733685-54733704 | MS.gene50546:CDS | 50.0% |
| ! | GACGCGTTTTTCCTTTCCAC+TGG | - | chr1.2:54733704-54733723 | None:intergenic | 50.0% |
| ! | TGTGGATTGACGCTCATCCA+AGG | + | chr1.2:54732904-54732923 | MS.gene50546:intron | 50.0% |
| GGGATCTTGGTCAAGCAAGC+AGG | + | chr1.2:54733860-54733879 | MS.gene50546:CDS | 55.0% | |
| TTGGTCCTGGTCCAGTGGAA+AGG | + | chr1.2:54733690-54733709 | MS.gene50546:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 54732431 | 54733954 | 54732431 | ID=MS.gene50546 |
| chr1.2 | mRNA | 54732431 | 54733954 | 54732431 | ID=MS.gene50546.t1;Parent=MS.gene50546 |
| chr1.2 | exon | 54732431 | 54732509 | 54732431 | ID=MS.gene50546.t1.exon1;Parent=MS.gene50546.t1 |
| chr1.2 | CDS | 54732431 | 54732509 | 54732431 | ID=cds.MS.gene50546.t1;Parent=MS.gene50546.t1 |
| chr1.2 | exon | 54733569 | 54733954 | 54733569 | ID=MS.gene50546.t1.exon2;Parent=MS.gene50546.t1 |
| chr1.2 | CDS | 54733569 | 54733954 | 54733569 | ID=cds.MS.gene50546.t1;Parent=MS.gene50546.t1 |
| Gene Sequence |
| Protein sequence |
