Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51145.t1 | XP_003624196.1 | 95.6 | 158 | 5 | 1 | 1 | 156 | 1 | 158 | 3.40E-83 | 317.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51145.t1 | G7KRK5 | 95.6 | 158 | 5 | 1 | 1 | 156 | 1 | 158 | 2.4e-83 | 317.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene51145 | 0.832072 | 1.16E-55 | -1.69E-46 |
| MS.gene049680 | MS.gene51145 | 0.840375 | 9.03E-58 | -1.69E-46 |
| MS.gene049825 | MS.gene51145 | 0.810456 | 1.14E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene51145 | 0.821345 | 4.24E-53 | -1.69E-46 |
| MS.gene050955 | MS.gene51145 | 0.804954 | 1.69E-49 | -1.69E-46 |
| MS.gene051043 | MS.gene51145 | 0.804256 | 2.36E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene51145 | 0.845213 | 4.67E-59 | -1.69E-46 |
| MS.gene051731 | MS.gene51145 | 0.804066 | 2.58E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene51145 | 0.811622 | 6.39E-51 | -1.69E-46 |
| MS.gene052239 | MS.gene51145 | -0.804825 | 1.79E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene51145 | 0.801248 | 9.85E-49 | -1.69E-46 |
| MS.gene052793 | MS.gene51145 | 0.852718 | 3.84E-61 | -1.69E-46 |
| MS.gene052947 | MS.gene51145 | 0.807013 | 6.22E-50 | -1.69E-46 |
| MS.gene053045 | MS.gene51145 | 0.822735 | 2.02E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene51145 | 0.847885 | 8.71E-60 | -1.69E-46 |
| MS.gene053879 | MS.gene51145 | 0.808729 | 2.68E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene51145 | 0.829314 | 5.52E-55 | -1.69E-46 |
| MS.gene054222 | MS.gene51145 | 0.829895 | 3.98E-55 | -1.69E-46 |
| MS.gene054403 | MS.gene51145 | 0.806061 | 9.87E-50 | -1.69E-46 |
| MS.gene054413 | MS.gene51145 | 0.810139 | 1.34E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene51145 | 0.81069 | 1.02E-50 | -1.69E-46 |
| MS.gene055150 | MS.gene51145 | 0.8056 | 1.23E-49 | -1.69E-46 |
| MS.gene05548 | MS.gene51145 | 0.857518 | 1.55E-62 | -1.69E-46 |
| MS.gene055555 | MS.gene51145 | 0.870726 | 1.17E-66 | -1.69E-46 |
| MS.gene056091 | MS.gene51145 | 0.803573 | 3.27E-49 | -1.69E-46 |
| MS.gene05689 | MS.gene51145 | 0.804156 | 2.47E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene51145 | 0.852658 | 4.00E-61 | -1.69E-46 |
| MS.gene057208 | MS.gene51145 | 0.811745 | 6.01E-51 | -1.69E-46 |
| MS.gene057694 | MS.gene51145 | 0.828168 | 1.04E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene51145 | 0.848943 | 4.44E-60 | -1.69E-46 |
| MS.gene05781 | MS.gene51145 | 0.801445 | 8.97E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene51145 | 0.817958 | 2.52E-52 | -1.69E-46 |
| MS.gene058008 | MS.gene51145 | 0.808156 | 3.56E-50 | -1.69E-46 |
| MS.gene058279 | MS.gene51145 | 0.817978 | 2.49E-52 | -1.69E-46 |
| MS.gene059227 | MS.gene51145 | 0.805124 | 1.55E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene51145 | 0.836638 | 8.32E-57 | -1.69E-46 |
| MS.gene05985 | MS.gene51145 | -0.858435 | 8.26E-63 | -1.69E-46 |
| MS.gene059935 | MS.gene51145 | 0.823264 | 1.52E-53 | -1.69E-46 |
| MS.gene06018 | MS.gene51145 | 0.825315 | 5.01E-54 | -1.69E-46 |
| MS.gene060244 | MS.gene51145 | 0.814145 | 1.79E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene51145 | 0.853598 | 2.15E-61 | -1.69E-46 |
| MS.gene060935 | MS.gene51145 | 0.809006 | 2.34E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene51145 | 0.811492 | 6.81E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene51145 | 0.806631 | 7.49E-50 | -1.69E-46 |
| MS.gene061243 | MS.gene51145 | 0.803884 | 2.82E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51145.t1 | MTR_7g080280 | 96.835 | 158 | 3 | 1 | 1 | 156 | 1 | 158 | 4.47e-112 | 317 |
| MS.gene51145.t1 | MTR_7g053107 | 60.526 | 114 | 44 | 1 | 39 | 152 | 36 | 148 | 4.63e-47 | 152 |
| MS.gene51145.t1 | MTR_2g010970 | 47.059 | 119 | 62 | 1 | 37 | 155 | 26 | 143 | 1.07e-35 | 122 |
| MS.gene51145.t1 | MTR_4g081560 | 48.718 | 117 | 59 | 1 | 39 | 155 | 29 | 144 | 3.89e-35 | 121 |
| MS.gene51145.t1 | MTR_4g091980 | 38.462 | 143 | 81 | 2 | 14 | 156 | 12 | 147 | 2.86e-29 | 106 |
| MS.gene51145.t1 | MTR_4g091970 | 35.065 | 154 | 94 | 1 | 3 | 156 | 1 | 148 | 5.46e-29 | 105 |
| MS.gene51145.t1 | MTR_4g091930 | 35.374 | 147 | 92 | 2 | 7 | 153 | 1 | 144 | 4.23e-27 | 100 |
| MS.gene51145.t1 | MTR_8g085580 | 40.870 | 115 | 67 | 1 | 38 | 152 | 29 | 142 | 2.92e-25 | 96.3 |
| MS.gene51145.t1 | MTR_4g064460 | 37.500 | 120 | 74 | 1 | 34 | 153 | 26 | 144 | 3.66e-25 | 95.9 |
| MS.gene51145.t1 | MTR_8g085590 | 41.379 | 116 | 65 | 3 | 39 | 153 | 31 | 144 | 4.33e-25 | 95.5 |
| MS.gene51145.t1 | MTR_2g010970 | 43.011 | 93 | 52 | 1 | 37 | 129 | 26 | 117 | 2.59e-23 | 90.1 |
| MS.gene51145.t1 | MTR_7g108775 | 29.710 | 138 | 90 | 3 | 16 | 152 | 11 | 142 | 1.77e-16 | 73.2 |
| MS.gene51145.t1 | MTR_7g108775 | 29.710 | 138 | 90 | 3 | 16 | 152 | 11 | 142 | 2.53e-16 | 73.6 |
| MS.gene51145.t1 | MTR_1g088250 | 29.060 | 117 | 78 | 2 | 38 | 152 | 23 | 136 | 2.12e-13 | 65.1 |
| MS.gene51145.t1 | MTR_6g086680 | 35.345 | 116 | 66 | 4 | 42 | 152 | 38 | 149 | 8.06e-12 | 60.8 |
| MS.gene51145.t1 | MTR_1g088260 | 30.556 | 108 | 69 | 3 | 47 | 152 | 4 | 107 | 9.01e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51145.t1 | AT3G07470 | 50.685 | 146 | 64 | 1 | 17 | 154 | 1 | 146 | 7.44e-52 | 164 |
| MS.gene51145.t1 | AT3G07470 | 50.685 | 146 | 64 | 1 | 17 | 154 | 1 | 146 | 8.17e-52 | 164 |
| MS.gene51145.t1 | AT3G07470 | 50.685 | 146 | 64 | 1 | 17 | 154 | 1 | 146 | 1.47e-51 | 163 |
| MS.gene51145.t1 | AT3G07460 | 50.350 | 143 | 63 | 2 | 18 | 152 | 1 | 143 | 7.00e-48 | 154 |
| MS.gene51145.t1 | AT5G16380 | 53.623 | 138 | 64 | 0 | 16 | 153 | 8 | 145 | 2.17e-46 | 151 |
| MS.gene51145.t1 | AT3G07460 | 56.303 | 119 | 52 | 0 | 34 | 152 | 25 | 143 | 7.02e-46 | 152 |
| MS.gene51145.t1 | AT1G61667 | 53.719 | 121 | 56 | 0 | 34 | 154 | 17 | 137 | 2.14e-42 | 139 |
| MS.gene51145.t1 | AT1G61667 | 52.000 | 125 | 60 | 0 | 30 | 154 | 49 | 173 | 3.45e-42 | 140 |
| MS.gene51145.t1 | AT5G54530 | 50.000 | 118 | 58 | 1 | 38 | 155 | 28 | 144 | 4.21e-38 | 129 |
| MS.gene51145.t1 | AT5G19860 | 37.607 | 117 | 72 | 1 | 37 | 153 | 34 | 149 | 3.82e-22 | 88.6 |
| MS.gene51145.t1 | AT1G55265 | 38.843 | 121 | 71 | 3 | 39 | 158 | 54 | 172 | 1.67e-21 | 86.7 |
| MS.gene51145.t1 | AT4G02360 | 29.104 | 134 | 91 | 2 | 20 | 152 | 10 | 140 | 3.16e-19 | 80.1 |
| MS.gene51145.t1 | AT1G02813 | 31.884 | 138 | 85 | 3 | 16 | 152 | 7 | 136 | 4.04e-17 | 74.7 |
| MS.gene51145.t1 | AT4G02370 | 27.941 | 136 | 93 | 2 | 19 | 152 | 12 | 144 | 9.01e-17 | 74.3 |
| MS.gene51145.t1 | AT1G02816 | 27.692 | 130 | 89 | 2 | 25 | 152 | 18 | 144 | 1.90e-15 | 70.9 |
| MS.gene51145.t1 | AT2G03350 | 29.457 | 129 | 87 | 3 | 26 | 152 | 46 | 172 | 7.72e-12 | 61.2 |
Find 51 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTATGATCCTAATATTA+AGG | 0.212709 | 7.3:+27239871 | MS.gene51145:CDS |
| CAACCATATACGATGAATTA+AGG | 0.222556 | 7.3:+27239726 | MS.gene51145:CDS |
| TTCTCGTTCTTAGCGTTTCA+TGG | 0.234067 | 7.3:+27239672 | MS.gene51145:CDS |
| GTTCTTATGGTTTCCTGTTA+AGG | 0.253897 | 7.3:+27239949 | MS.gene51145:CDS |
| CTGCTCAGGAACTGTTCTTA+TGG | 0.260029 | 7.3:+27239936 | MS.gene51145:CDS |
| CATATCTATGTAGTTATTCT+TGG | 0.277932 | 7.3:+27240404 | MS.gene51145:intron |
| TTCTTATGGTTTCCTGTTAA+GGG | 0.291646 | 7.3:+27239950 | MS.gene51145:CDS |
| TGCCCTTAATTCATCGTATA+TGG | 0.297917 | 7.3:-27239729 | None:intergenic |
| CCAAGGGTACCCTTAATATT+AGG | 0.319867 | 7.3:-27239881 | None:intergenic |
| GGCAAGATCAAAGGATTATC+TGG | 0.347833 | 7.3:+27239908 | MS.gene51145:CDS |
| TGGAACCAGTGGTGAATTCC+AGG | 0.358914 | 7.3:+27239805 | MS.gene51145:CDS |
| ATTAAGGGTACCCTTGGTTA+TGG | 0.369525 | 7.3:+27239887 | MS.gene51145:CDS |
| TCAACACGAATGCCCTTAAC+AGG | 0.369824 | 7.3:-27239962 | None:intergenic |
| TCATACTTCGTTATTCCCTT+TGG | 0.400855 | 7.3:-27239776 | None:intergenic |
| ATATCTATGTAGTTATTCTT+GGG | 0.428581 | 7.3:+27240405 | MS.gene51145:intron |
| AACCATATACGATGAATTAA+GGG | 0.433338 | 7.3:+27239727 | MS.gene51145:CDS |
| CACTATGATCCTAATATTAA+GGG | 0.436502 | 7.3:+27239872 | MS.gene51145:CDS |
| GGTCTCATTCACTTTGATGT+TGG | 0.437916 | 7.3:+27239998 | MS.gene51145:CDS |
| CCTAATATTAAGGGTACCCT+TGG | 0.447732 | 7.3:+27239881 | MS.gene51145:CDS |
| CCAGTGGTGAATTCCAGGTT+TGG | 0.463316 | 7.3:+27239810 | MS.gene51145:CDS |
| TGGTTATGCACCTACGCAAA+CGG | 0.492953 | 7.3:+27239692 | MS.gene51145:CDS |
| CCCTTTGGTAGAAGCCCTAC+GGG | 0.493865 | 7.3:-27239761 | None:intergenic |
| TACGATGAATTAAGGGCAAA+GGG | 0.498085 | 7.3:+27239734 | MS.gene51145:CDS |
| AAAACCTCAGGGTTACAATC+AGG | 0.505969 | 7.3:-27240064 | None:intergenic |
| TGTCTAGTGACAACTGACTA+AGG | 0.509334 | 7.3:-27240490 | None:intergenic |
| CTCTCAATGGCTATGGCTAG+TGG | 0.510825 | 7.3:+27239611 | None:intergenic |
| CGTGTTGATCTACCTAGCTC+TGG | 0.512045 | 7.3:+27239977 | MS.gene51145:CDS |
| AGAAGAAGATGAAAATTCGA+TGG | 0.513668 | 7.3:-27239647 | None:intergenic |
| CTTGGTTATGGCAAGATCAA+AGG | 0.516045 | 7.3:+27239899 | MS.gene51145:CDS |
| TCCCTTTGGTAGAAGCCCTA+CGG | 0.517563 | 7.3:-27239762 | None:intergenic |
| TCCCGTAGGGCTTCTACCAA+AGG | 0.520926 | 7.3:+27239760 | MS.gene51145:CDS |
| CCCGTAGGGCTTCTACCAAA+GGG | 0.524834 | 7.3:+27239761 | MS.gene51145:CDS |
| ATAACGAAGTATGAGATCAA+TGG | 0.526239 | 7.3:+27239785 | MS.gene51145:CDS |
| ATTATCTGGTATGACTGCTC+AGG | 0.527016 | 7.3:+27239922 | MS.gene51145:CDS |
| GGGCAAAGGGTCTTCCCGTA+GGG | 0.543039 | 7.3:+27239747 | MS.gene51145:CDS |
| ATGGTTCTTTCATCCAAACC+TGG | 0.549503 | 7.3:-27239823 | None:intergenic |
| GATCTTATGTAAACAAGCCA+TGG | 0.561139 | 7.3:+27240467 | MS.gene51145:CDS |
| ATACGATGAATTAAGGGCAA+AGG | 0.561325 | 7.3:+27239733 | MS.gene51145:CDS |
| CCAAACCTGGAATTCACCAC+TGG | 0.568465 | 7.3:-27239810 | None:intergenic |
| TAGTGTTGATGATTAGAGTG+AGG | 0.584750 | 7.3:+27240433 | MS.gene51145:CDS |
| AAGTGAATGAGACCAGAGCT+AGG | 0.587179 | 7.3:-27239989 | None:intergenic |
| AGGGCAAAGGGTCTTCCCGT+AGG | 0.591812 | 7.3:+27239746 | MS.gene51145:CDS |
| TTTGATCTTGCCATAACCAA+GGG | 0.597810 | 7.3:-27239897 | None:intergenic |
| CTTTGATCTTGCCATAACCA+AGG | 0.603621 | 7.3:-27239898 | None:intergenic |
| TGAAAGAACCATGTAATGCA+AGG | 0.604149 | 7.3:+27239834 | MS.gene51145:CDS |
| GTGACAACTGACTAAGGCCA+TGG | 0.613121 | 7.3:-27240484 | None:intergenic |
| TAATGCAAGGTTTGAAAACG+AGG | 0.621104 | 7.3:+27239847 | MS.gene51145:CDS |
| ACCTCAGGGTTACAATCAGG+AGG | 0.622444 | 7.3:-27240061 | None:intergenic |
| TGAATTTGAACCGTTTGCGT+AGG | 0.633813 | 7.3:-27239702 | None:intergenic |
| TATGAGATCAATGGAACCAG+TGG | 0.634964 | 7.3:+27239794 | MS.gene51145:CDS |
| TCCTCCTGATTGTAACCCTG+AGG | 0.653771 | 7.3:+27240060 | MS.gene51145:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCATAATTTTTGTTATTT+GGG | + | chr7.3:27240319-27240338 | MS.gene51145:intron | 10.0% |
| !!! | TATTTATTTTTTTCTCTTTT+TGG | + | chr7.3:27240108-27240127 | MS.gene51145:intron | 10.0% |
| !!! | CATTCATAATTTTTGTTATT+TGG | + | chr7.3:27240318-27240337 | MS.gene51145:intron | 15.0% |
| !!! | TGTGATTTTTTTTTTTTGTT+GGG | + | chr7.3:27240288-27240307 | MS.gene51145:intron | 15.0% |
| !!! | TTGTGATTTTTTTTTTTTGT+TGG | + | chr7.3:27240287-27240306 | MS.gene51145:intron | 15.0% |
| !! | ATAAATAACCAAATCAAGAA+TGG | - | chr7.3:27240095-27240114 | None:intergenic | 20.0% |
| !! | ATATCTATGTAGTTATTCTT+GGG | + | chr7.3:27240405-27240424 | MS.gene51145:intron | 20.0% |
| !!! | AAAGTTTTGATTTTTATGGT+TGG | + | chr7.3:27240343-27240362 | MS.gene51145:intron | 20.0% |
| !!! | AAATTCATGTTTTTAAGAGT+TGG | + | chr7.3:27240221-27240240 | MS.gene51145:intron | 20.0% |
| !!! | AAGTTTTGATTTTTATGGTT+GGG | + | chr7.3:27240344-27240363 | MS.gene51145:intron | 20.0% |
| !!! | AATTCATGTTTTTAAGAGTT+GGG | + | chr7.3:27240222-27240241 | MS.gene51145:intron | 20.0% |
| !!! | TTAAAGTTGTGATTTTTGTT+GGG | + | chr7.3:27240192-27240211 | MS.gene51145:intron | 20.0% |
| !!! | TTTAAAGTTGTGATTTTTGT+TGG | + | chr7.3:27240191-27240210 | MS.gene51145:intron | 20.0% |
| !!! | TTTTTTTTTTGTTGGGTATT+TGG | + | chr7.3:27240295-27240314 | MS.gene51145:intron | 20.0% |
| ! | AACCATATACGATGAATTAA+GGG | + | chr7.3:27239727-27239746 | MS.gene51145:CDS | 25.0% |
| ! | CACTATGATCCTAATATTAA+GGG | + | chr7.3:27239872-27239891 | MS.gene51145:CDS | 25.0% |
| ! | CATATCTATGTAGTTATTCT+TGG | + | chr7.3:27240404-27240423 | MS.gene51145:intron | 25.0% |
| ! | TCACTATGATCCTAATATTA+AGG | + | chr7.3:27239871-27239890 | MS.gene51145:CDS | 25.0% |
| !! | TTTTTCATCCATTCTTGATT+TGG | + | chr7.3:27240084-27240103 | MS.gene51145:intron | 25.0% |
| !!! | AGATTCATGTTTTTGTTATC+AGG | + | chr7.3:27240165-27240184 | MS.gene51145:intron | 25.0% |
| !!! | GATTCATGTTTTTGTTATCA+GGG | + | chr7.3:27240166-27240185 | MS.gene51145:intron | 25.0% |
| !!! | GGGTAAAGTTTTGATTTTTA+TGG | + | chr7.3:27240339-27240358 | MS.gene51145:intron | 25.0% |
| AGAAGAAGATGAAAATTCGA+TGG | - | chr7.3:27239650-27239669 | None:intergenic | 30.0% | |
| ATAACGAAGTATGAGATCAA+TGG | + | chr7.3:27239785-27239804 | MS.gene51145:CDS | 30.0% | |
| CAACCATATACGATGAATTA+AGG | + | chr7.3:27239726-27239745 | MS.gene51145:CDS | 30.0% | |
| TGAAATTCATGTTGTGTAGT+TGG | + | chr7.3:27240135-27240154 | MS.gene51145:intron | 30.0% | |
| TTCTTATGGTTTCCTGTTAA+GGG | + | chr7.3:27239950-27239969 | MS.gene51145:CDS | 30.0% | |
| ! | TTTTCAAACCTTGCATTACA+TGG | - | chr7.3:27239845-27239864 | None:intergenic | 30.0% |
| !! | ATTCAGGTTTTCTGTTATTC+GGG | + | chr7.3:27240253-27240272 | MS.gene51145:intron | 30.0% |
| !! | GATTCAGGTTTTCTGTTATT+CGG | + | chr7.3:27240252-27240271 | MS.gene51145:intron | 30.0% |
| AGAATGGATGAAAAAACCTC+AGG | - | chr7.3:27240079-27240098 | None:intergenic | 35.0% | |
| ATACGATGAATTAAGGGCAA+AGG | + | chr7.3:27239733-27239752 | MS.gene51145:CDS | 35.0% | |
| GAATGGATGAAAAAACCTCA+GGG | - | chr7.3:27240078-27240097 | None:intergenic | 35.0% | |
| GATCTTATGTAAACAAGCCA+TGG | + | chr7.3:27240467-27240486 | MS.gene51145:CDS | 35.0% | |
| GTTCTTATGGTTTCCTGTTA+AGG | + | chr7.3:27239949-27239968 | MS.gene51145:CDS | 35.0% | |
| TAATGCAAGGTTTGAAAACG+AGG | + | chr7.3:27239847-27239866 | MS.gene51145:CDS | 35.0% | |
| TACGATGAATTAAGGGCAAA+GGG | + | chr7.3:27239734-27239753 | MS.gene51145:CDS | 35.0% | |
| TCATACTTCGTTATTCCCTT+TGG | - | chr7.3:27239779-27239798 | None:intergenic | 35.0% | |
| TGAAAGAACCATGTAATGCA+AGG | + | chr7.3:27239834-27239853 | MS.gene51145:CDS | 35.0% | |
| TGCCCTTAATTCATCGTATA+TGG | - | chr7.3:27239732-27239751 | None:intergenic | 35.0% | |
| TTTGATCTTGCCATAACCAA+GGG | - | chr7.3:27239900-27239919 | None:intergenic | 35.0% | |
| !! | TAGTGTTGATGATTAGAGTG+AGG | + | chr7.3:27240433-27240452 | MS.gene51145:CDS | 35.0% |
| AAAACCTCAGGGTTACAATC+AGG | - | chr7.3:27240067-27240086 | None:intergenic | 40.0% | |
| ATGGTTCTTTCATCCAAACC+TGG | - | chr7.3:27239826-27239845 | None:intergenic | 40.0% | |
| ATTATCTGGTATGACTGCTC+AGG | + | chr7.3:27239922-27239941 | MS.gene51145:CDS | 40.0% | |
| CTTGGTTATGGCAAGATCAA+AGG | + | chr7.3:27239899-27239918 | MS.gene51145:CDS | 40.0% | |
| CTTTGATCTTGCCATAACCA+AGG | - | chr7.3:27239901-27239920 | None:intergenic | 40.0% | |
| GAGTTGGGTATATGAGATTC+AGG | + | chr7.3:27240237-27240256 | MS.gene51145:intron | 40.0% | |
| GGCAAGATCAAAGGATTATC+TGG | + | chr7.3:27239908-27239927 | MS.gene51145:CDS | 40.0% | |
| GGTCTCATTCACTTTGATGT+TGG | + | chr7.3:27239998-27240017 | MS.gene51145:CDS | 40.0% | |
| TATGAGATCAATGGAACCAG+TGG | + | chr7.3:27239794-27239813 | MS.gene51145:CDS | 40.0% | |
| TGAATTTGAACCGTTTGCGT+AGG | - | chr7.3:27239705-27239724 | None:intergenic | 40.0% | |
| TTCTCGTTCTTAGCGTTTCA+TGG | + | chr7.3:27239672-27239691 | MS.gene51145:CDS | 40.0% | |
| !! | ATTAAGGGTACCCTTGGTTA+TGG | + | chr7.3:27239887-27239906 | MS.gene51145:CDS | 40.0% |
| !! | CCAAGGGTACCCTTAATATT+AGG | - | chr7.3:27239884-27239903 | None:intergenic | 40.0% |
| !! | CCTAATATTAAGGGTACCCT+TGG | + | chr7.3:27239881-27239900 | MS.gene51145:CDS | 40.0% |
| AAGTGAATGAGACCAGAGCT+AGG | - | chr7.3:27239992-27240011 | None:intergenic | 45.0% | |
| CTGCTCAGGAACTGTTCTTA+TGG | + | chr7.3:27239936-27239955 | MS.gene51145:CDS | 45.0% | |
| TCAACACGAATGCCCTTAAC+AGG | - | chr7.3:27239965-27239984 | None:intergenic | 45.0% | |
| TGGTTATGCACCTACGCAAA+CGG | + | chr7.3:27239692-27239711 | MS.gene51145:CDS | 45.0% | |
| ACCTCAGGGTTACAATCAGG+AGG | - | chr7.3:27240064-27240083 | None:intergenic | 50.0% | |
| CCAAACCTGGAATTCACCAC+TGG | - | chr7.3:27239813-27239832 | None:intergenic | 50.0% | |
| CCAGTGGTGAATTCCAGGTT+TGG | + | chr7.3:27239810-27239829 | MS.gene51145:CDS | 50.0% | |
| GTGACAACTGACTAAGGCCA+TGG | - | chr7.3:27240487-27240506 | None:intergenic | 50.0% | |
| TCCCTTTGGTAGAAGCCCTA+CGG | - | chr7.3:27239765-27239784 | None:intergenic | 50.0% | |
| TCCTCCTGATTGTAACCCTG+AGG | + | chr7.3:27240060-27240079 | MS.gene51145:CDS | 50.0% | |
| TGGAACCAGTGGTGAATTCC+AGG | + | chr7.3:27239805-27239824 | MS.gene51145:CDS | 50.0% | |
| ! | CGTGTTGATCTACCTAGCTC+TGG | + | chr7.3:27239977-27239996 | MS.gene51145:CDS | 50.0% |
| CCCGTAGGGCTTCTACCAAA+GGG | + | chr7.3:27239761-27239780 | MS.gene51145:CDS | 55.0% | |
| CCCTTTGGTAGAAGCCCTAC+GGG | - | chr7.3:27239764-27239783 | None:intergenic | 55.0% | |
| TCCCGTAGGGCTTCTACCAA+AGG | + | chr7.3:27239760-27239779 | MS.gene51145:CDS | 55.0% | |
| AGGGCAAAGGGTCTTCCCGT+AGG | + | chr7.3:27239746-27239765 | MS.gene51145:CDS | 60.0% | |
| GGGCAAAGGGTCTTCCCGTA+GGG | + | chr7.3:27239747-27239766 | MS.gene51145:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 27239617 | 27240509 | 27239617 | ID=MS.gene51145 |
| chr7.3 | mRNA | 27239617 | 27240509 | 27239617 | ID=MS.gene51145.t1;Parent=MS.gene51145 |
| chr7.3 | exon | 27239617 | 27240081 | 27239617 | ID=MS.gene51145.t1.exon1;Parent=MS.gene51145.t1 |
| chr7.3 | CDS | 27239617 | 27240081 | 27239617 | ID=cds.MS.gene51145.t1;Parent=MS.gene51145.t1 |
| chr7.3 | exon | 27240417 | 27240509 | 27240417 | ID=MS.gene51145.t1.exon2;Parent=MS.gene51145.t1 |
| chr7.3 | CDS | 27240417 | 27240509 | 27240417 | ID=cds.MS.gene51145.t1;Parent=MS.gene51145.t1 |
| Gene Sequence |
| Protein sequence |
