AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54388


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54388.t1 MTR_7g006080 98.837 344 4 0 1 344 1 344 0.0 693
MS.gene54388.t1 MTR_7g104290 50.508 295 142 2 23 315 28 320 1.00e-97 294
MS.gene54388.t1 MTR_7g104300 49.324 296 145 2 23 315 28 321 4.21e-94 284
MS.gene54388.t1 MTR_7g006100 75.424 118 16 1 46 163 258 362 4.03e-51 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54388.t1 AT3G59310 67.771 332 102 1 1 327 1 332 4.49e-158 446
MS.gene54388.t1 AT3G59340 71.821 291 82 0 10 300 13 303 1.33e-157 445
MS.gene54388.t1 AT3G59340 71.821 291 82 0 10 300 40 330 1.73e-157 446
MS.gene54388.t1 AT3G59340 71.821 291 82 0 10 300 40 330 1.73e-157 446
MS.gene54388.t1 AT3G59340 71.821 291 82 0 10 300 40 330 1.73e-157 446
MS.gene54388.t1 AT3G59310 61.983 363 102 2 1 327 1 363 1.07e-151 431
MS.gene54388.t1 AT3G59310 63.855 332 97 2 1 327 1 314 3.66e-142 405
MS.gene54388.t1 AT3G59320 62.539 323 121 0 10 332 11 333 2.88e-133 383
MS.gene54388.t1 AT3G59330 63.136 236 59 2 4 213 5 238 7.03e-92 275
MS.gene54388.t1 AT3G59330 63.090 233 58 2 4 210 5 235 2.97e-90 271
MS.gene54388.t1 AT3G59320 61.207 232 90 0 101 332 1 232 2.16e-88 265
MS.gene54388.t1 AT3G59330 61.441 236 54 2 4 213 5 229 8.04e-87 262

Find 64 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGACTAAGAACACATTAAT+TGG 0.251260 7.4:-93244620 MS.gene54388:CDS
ACATTAATTGGCCTTGCTTT+AGG 0.259223 7.4:-93244608 MS.gene54388:CDS
GAATAAGCAAGCACCTTTAG+AGG 0.281729 7.4:+93244242 None:intergenic
TGGTACTATTATATACTTCT+TGG 0.287931 7.4:-93243484 MS.gene54388:CDS
ATGGCAATGTTAGGTCTCTT+TGG 0.309096 7.4:-93241993 MS.gene54388:CDS
TCGTCGTATTGCAGAGGTTT+TGG 0.323324 7.4:-93240634 MS.gene54388:intron
TTTGCTATGAGTTGCTGAAC+TGG 0.331987 7.4:+93240546 None:intergenic
AAATCTATTCACTGGTCGGC+TGG 0.333126 7.4:-93241832 MS.gene54388:CDS
TGATGGATATTAAGAAATAT+TGG 0.337858 7.4:-93244640 MS.gene54388:CDS
CATGCGTCATGCTGCTTACA+TGG 0.358791 7.4:-93242988 MS.gene54388:CDS
TCTCTTCTCATCACTGCTAC+TGG 0.360410 7.4:-93244575 MS.gene54388:CDS
ATTATGCTTTCCAGGTTGAT+TGG 0.366989 7.4:-93241138 MS.gene54388:intron
TATAGATTCAAGAAGATAAC+TGG 0.382296 7.4:-93242947 MS.gene54388:CDS
ATTCGTACCTTAAGCAGAAC+AGG 0.384721 7.4:+93241467 None:intergenic
TCATCCTGTCTGATTGCAAC+AGG 0.386095 7.4:+93240574 None:intergenic
GGTGGAAGTAATCCTCGTTT+AGG 0.403367 7.4:-93242670 MS.gene54388:CDS
GGTGTAATTGTTTGCATAGC+CGG 0.409701 7.4:-93242926 MS.gene54388:CDS
GCGTTTGGTGCTGTTGTCAT+TGG 0.411820 7.4:-93241103 MS.gene54388:CDS
CATAGCAAAGGAAATGTGTC+TGG 0.413561 7.4:-93240532 MS.gene54388:CDS
TCTAGTCCCTGTTCTGCTTA+AGG 0.413618 7.4:-93241474 MS.gene54388:intron
GAAGAGCTCATGGCAATGTT+AGG 0.420524 7.4:-93242002 MS.gene54388:CDS
CTATTATATACTTCTTGGAT+TGG 0.443539 7.4:-93243479 MS.gene54388:CDS
TGTTTCTAATACAGGCGAAA+TGG 0.446396 7.4:-93243504 MS.gene54388:intron
CTTTCAAGGATACATTTGAA+TGG 0.460817 7.4:+93241956 None:intergenic
GGTTCTTCAACAGCATTAGC+AGG 0.462571 7.4:+93240595 None:intergenic
TGGATGTACTACTTGGCGTT+TGG 0.468134 7.4:-93241118 MS.gene54388:CDS
TTTAGAAAGGACTGTGATGT+TGG 0.485502 7.4:+93244317 None:intergenic
AATCTATTCACTGGTCGGCT+GGG 0.490397 7.4:-93241831 MS.gene54388:CDS
GGAGACGTTCTTGTTATCGC+TGG 0.498105 7.4:-93242649 MS.gene54388:CDS
CTACAGAAGAAAGCCTCTAA+AGG 0.503377 7.4:-93244255 MS.gene54388:intron
AAGAACAACAAGGATGATGA+TGG 0.517507 7.4:-93244657 None:intergenic
CACCTTATGAACAGTTGTGA+AGG 0.528488 7.4:-93243065 MS.gene54388:intron
GGTTGATTGGATGTACTACT+TGG 0.533288 7.4:-93241125 MS.gene54388:CDS
ATGAGCTTAAATCTATTCAC+TGG 0.535645 7.4:-93241840 MS.gene54388:CDS
ATCTATTCACTGGTCGGCTG+GGG 0.536644 7.4:-93241830 MS.gene54388:CDS
GCAATGTTAGGTCTCTTTGG+TGG 0.537905 7.4:-93241990 MS.gene54388:CDS
TATACTTTCTTAAGCTACCC+AGG 0.539167 7.4:+93240498 None:intergenic
TGTTGCAATCAGACAGGATG+AGG 0.549578 7.4:-93240572 MS.gene54388:CDS
GACATTACTGAATGCATACA+AGG 0.557186 7.4:+93242621 None:intergenic
GTGTGATGCTACTTGACTGC+TGG 0.567229 7.4:-93243018 MS.gene54388:CDS
CATCTTCGCTTACCATGAGA+AGG 0.573397 7.4:-93241257 MS.gene54388:intron
CTCTTCTGACCTCAGACATG+TGG 0.578272 7.4:-93241294 MS.gene54388:CDS
TGCTGATAGAGAAGAGCTCA+TGG 0.583244 7.4:-93242012 MS.gene54388:CDS
AGAACCTGTTGCAATCAGAC+AGG 0.585681 7.4:-93240578 MS.gene54388:CDS
AAGCAGCATGACGCATGGAA+TGG 0.591362 7.4:+93242994 None:intergenic
ACTTCTTGGATTGGTTGATG+TGG 0.592336 7.4:-93243470 MS.gene54388:CDS
CATGTAAGCAGCATGACGCA+TGG 0.595629 7.4:+93242989 None:intergenic
AAAGAAATTGACCTAAAGCA+AGG 0.605050 7.4:+93244597 None:intergenic
GCTTAAATCTATTCACTGGT+CGG 0.611387 7.4:-93241836 MS.gene54388:CDS
AAATACAACTAGGACAAGGC+CGG 0.612279 7.4:+93242907 None:intergenic
ATAGCAAAGGAAATGTGTCT+GGG 0.615099 7.4:-93240531 MS.gene54388:CDS
AGTTCAGCAACTCATAGCAA+AGG 0.620241 7.4:-93240544 MS.gene54388:CDS
GTTCATGCTGGTGACCGTGC+AGG 0.625656 7.4:-93242878 MS.gene54388:intron
GTTCTTCAACAGCATTAGCA+GGG 0.626050 7.4:+93240596 None:intergenic
TAGCATCACACTTGTAAGTG+AGG 0.628131 7.4:+93243030 None:intergenic
TATTTCGTCTCACAGCTCAA+CGG 0.632141 7.4:-93241337 MS.gene54388:intron
TATAAAGCCACCTACCTGCA+CGG 0.642251 7.4:+93242864 None:intergenic
GTTACTGACAGACCTTCTCA+TGG 0.642594 7.4:+93241245 None:intergenic
GAACATCCGAAAATACAACT+AGG 0.652850 7.4:+93242897 None:intergenic
TAAGACAGACCACATGTCTG+AGG 0.664215 7.4:+93241285 None:intergenic
CCGAAAATACAACTAGGACA+AGG 0.664542 7.4:+93242903 None:intergenic
TTCGTACCTTAAGCAGAACA+GGG 0.675043 7.4:+93241468 None:intergenic
TGCATTCAGTAATGTCAGTG+AGG 0.688986 7.4:-93242614 MS.gene54388:intron
ACAAGAACGTCTCCTAAACG+AGG 0.721995 7.4:+93242658 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACCTAATAAGTTTAT+AGG - chr7.4:93241892-93241911 MS.gene54388:intron 15.0%
!! AAAAATTGTTATGTTGAATT+TGG - chr7.4:93242985-93243004 MS.gene54388:CDS 15.0%
!! AAAATTGTTATGTTGAATTT+GGG - chr7.4:93242986-93243005 MS.gene54388:CDS 15.0%
!! TTAACAAAAATGTCTTTAAA+CGG + chr7.4:93241619-93241638 None:intergenic 15.0%
!! AAACAAAATAACAATAACAC+GGG + chr7.4:93243093-93243112 None:intergenic 20.0%
!! AAATTGTTATGTTGAATTTG+GGG - chr7.4:93242987-93243006 MS.gene54388:CDS 20.0%
!! AATAAGTTTATAGGTGTTTA+TGG - chr7.4:93241901-93241920 MS.gene54388:intron 20.0%
!! AGTTCATATATCAAACTAAT+TGG + chr7.4:93243565-93243584 None:intergenic 20.0%
!! CAAAAACACATAATTTAGAA+AGG + chr7.4:93240850-93240869 None:intergenic 20.0%
!! CAATATATAATCAACTTTCA+AGG + chr7.4:93243212-93243231 None:intergenic 20.0%
!! GAAACAAAATAACAATAACA+CGG + chr7.4:93243094-93243113 None:intergenic 20.0%
!! TAAACACCTATAAACTTATT+AGG + chr7.4:93241901-93241920 None:intergenic 20.0%
!! TACTGATCATAATAAAAGAT+AGG + chr7.4:93242410-93242429 None:intergenic 20.0%
!! TGATGATATTATCATATCAT+AGG - chr7.4:93242460-93242479 MS.gene54388:intron 20.0%
!! TTATGTTTATTATCAAAGTG+TGG - chr7.4:93244309-93244328 MS.gene54388:CDS 20.0%
!! TTATTCTTATGTACTCTATT+TGG - chr7.4:93240926-93240945 MS.gene54388:intron 20.0%
!!! ACTAGTTATTAGTATTGAAA+AGG - chr7.4:93242648-93242667 MS.gene54388:CDS 20.0%
!!! ATTCTCCATATATTTTTTCT+TGG - chr7.4:93242358-93242377 MS.gene54388:intron 20.0%
!!! GGTTTTATTATTTTCTAAAG+AGG - chr7.4:93241383-93241402 MS.gene54388:intron 20.0%
!!! TAACGTTTTTAGAATAGAAA+TGG + chr7.4:93240984-93241003 None:intergenic 20.0%
!!! TATAAATATCGAGCTTTTTA+CGG - chr7.4:93243763-93243782 MS.gene54388:intron 20.0%
!!! TATTATTTTTTGTCGTCTTA+TGG - chr7.4:93240797-93240816 MS.gene54388:intron 20.0%
!!! TGAAAGTTGATTATATATTG+AGG - chr7.4:93243212-93243231 MS.gene54388:intron 20.0%
!!! TGATGGATATTAAGAAATAT+TGG - chr7.4:93240511-93240530 MS.gene54388:CDS 20.0%
! AAGGTACGAATTTAAACATA+AGG - chr7.4:93243696-93243715 MS.gene54388:intron 25.0%
! ACATGCATGAAACTTATTTA+AGG - chr7.4:93244390-93244409 MS.gene54388:intron 25.0%
! AGATAGATAAAAAGGAAGTA+AGG + chr7.4:93243931-93243950 None:intergenic 25.0%
! ATTTGTGACTCATAATTAGT+AGG + chr7.4:93243966-93243985 None:intergenic 25.0%
! CAAACTGAATTTCATTCAAA+CGG - chr7.4:93242961-93242980 MS.gene54388:CDS 25.0%
! CTATTATATACTTCTTGGAT+TGG - chr7.4:93241672-93241691 MS.gene54388:intron 25.0%
! GACTTCCAAGAAAAAATATA+TGG + chr7.4:93242366-93242385 None:intergenic 25.0%
! GATTATATATTGAGGACTAT+TGG - chr7.4:93243220-93243239 MS.gene54388:intron 25.0%
! TATAGATTCAAGAAGATAAC+TGG - chr7.4:93242204-93242223 MS.gene54388:intron 25.0%
! TATCTGCAATGAAAATTGTT+TGG - chr7.4:93241528-93241547 MS.gene54388:intron 25.0%
! TCATGACCAAAGTAATTAAA+AGG + chr7.4:93240667-93240686 None:intergenic 25.0%
! TCTGAATATAATAATGAGCA+TGG + chr7.4:93242812-93242831 None:intergenic 25.0%
! TCTTCTGATTTAGCTAAAAA+AGG - chr7.4:93240606-93240625 MS.gene54388:CDS 25.0%
! TGATATTATCATATCATAGG+TGG - chr7.4:93242463-93242482 MS.gene54388:intron 25.0%
! TGGTACTATTATATACTTCT+TGG - chr7.4:93241667-93241686 MS.gene54388:intron 25.0%
! TTTCTGTGAGATAGATAAAA+AGG + chr7.4:93243939-93243958 None:intergenic 25.0%
!! ATAAATATCGAGCTTTTTAC+GGG - chr7.4:93243764-93243783 MS.gene54388:intron 25.0%
!! GTTATTAGTATTGAAAAGGT+TGG - chr7.4:93242652-93242671 MS.gene54388:CDS 25.0%
!! TCTTAATGTTCGTTTTCATT+AGG - chr7.4:93242705-93242724 MS.gene54388:intron 25.0%
!! TCTTTAGGTTCTAATTTATG+AGG - chr7.4:93241867-93241886 MS.gene54388:intron 25.0%
!!! CATAAGGATTCTAAAGATTT+TGG - chr7.4:93243712-93243731 MS.gene54388:intron 25.0%
!!! CTTCATATTGTTTCTAATAC+AGG - chr7.4:93241639-93241658 MS.gene54388:intron 25.0%
!!! TCACTTCCTTTTAATTACTT+TGG - chr7.4:93240658-93240677 MS.gene54388:intron 25.0%
!!! TTTTCATTTTGAAGCCTTAA+TGG - chr7.4:93243261-93243280 MS.gene54388:intron 25.0%
AAAAACTAGCATCTCAACAT+TGG + chr7.4:93241409-93241428 None:intergenic 30.0%
AAAGAAATTGACCTAAAGCA+AGG + chr7.4:93240557-93240576 None:intergenic 30.0%
AAGATATCCTTAGTCTGTAA+TGG - chr7.4:93244467-93244486 MS.gene54388:intron 30.0%
AAGTCAACATAAAGCTAGTT+TGG + chr7.4:93242017-93242036 None:intergenic 30.0%
ACTTTCATTTCTTGTTCTGT+TGG - chr7.4:93244103-93244122 MS.gene54388:intron 30.0%
ATAAAACCCCATTCAGAATT+AGG + chr7.4:93241371-93241390 None:intergenic 30.0%
ATGAGCTTAAATCTATTCAC+TGG - chr7.4:93243311-93243330 MS.gene54388:intron 30.0%
ATGGCATAAGCACTTAATTA+AGG + chr7.4:93241171-93241190 None:intergenic 30.0%
CATCAGACAAACATGATAAA+TGG + chr7.4:93242445-93242464 None:intergenic 30.0%
CTCAAATAAGTCAATCCAAA+CGG - chr7.4:93241143-93241162 MS.gene54388:intron 30.0%
CTCAGTTGAAATAAGTCTTT+AGG - chr7.4:93241852-93241871 MS.gene54388:CDS 30.0%
CTTTCAAGGATACATTTGAA+TGG + chr7.4:93243198-93243217 None:intergenic 30.0%
CTTTCATTTCTTGTTCTGTT+GGG - chr7.4:93244104-93244123 MS.gene54388:intron 30.0%
TAAAACCCCATTCAGAATTA+GGG + chr7.4:93241370-93241389 None:intergenic 30.0%
TAGAACTAATTATGCTTTCC+AGG - chr7.4:93244005-93244024 MS.gene54388:intron 30.0%
TGGACTAAGAACACATTAAT+TGG - chr7.4:93240531-93240550 MS.gene54388:CDS 30.0%
TGGATTATCTTCCAGATTAT+GGG - chr7.4:93241824-93241843 MS.gene54388:intron 30.0%
TGGCATAAGCACTTAATTAA+GGG + chr7.4:93241170-93241189 None:intergenic 30.0%
TTCAGTTTGACAAGAAACTA+TGG + chr7.4:93242950-93242969 None:intergenic 30.0%
TTGGATTATCTTCCAGATTA+TGG - chr7.4:93241823-93241842 MS.gene54388:intron 30.0%
TTTACTAAAAACTCCTGCAA+TGG + chr7.4:93243116-93243135 None:intergenic 30.0%
! AGCCATCTTTTTATGTATCA+GGG - chr7.4:93242774-93242793 MS.gene54388:intron 30.0%
! GATCGATATTTAGAAAGCAT+TGG - chr7.4:93241749-93241768 MS.gene54388:intron 30.0%
! TAATGTTCGTTTTCATTAGG+CGG - chr7.4:93242708-93242727 MS.gene54388:intron 30.0%
! TATCTTCCAATGTTTGTTAC+AGG - chr7.4:93243608-93243627 MS.gene54388:intron 30.0%
! TGCTAGCATAAACATTTTTG+CGG + chr7.4:93241114-93241133 None:intergenic 30.0%
! TTATGCATTTTGCAACACTT+TGG - chr7.4:93242582-93242601 MS.gene54388:intron 30.0%
!! GTGTTTTTGATGATTGTCTA+TGG - chr7.4:93240861-93240880 MS.gene54388:intron 30.0%
!!! ATTTTTTGTCGTCTTATGGT+AGG - chr7.4:93240801-93240820 MS.gene54388:intron 30.0%
!!! CTGTTTTTTATAAGCTATCC+AGG - chr7.4:93241249-93241268 MS.gene54388:intron 30.0%
!!! TCCTTTTTTTGGATTTTCTG+TGG - chr7.4:93243635-93243654 MS.gene54388:intron 30.0%
!!! TGTTATTTTGTTTCCATTGC+AGG - chr7.4:93243100-93243119 MS.gene54388:intron 30.0%
!!! TTACAGGCATTTCCTTTTTT+TGG - chr7.4:93243624-93243643 MS.gene54388:intron 30.0%
AACAGACCCTAATTCTGAAT+GGG - chr7.4:93241361-93241380 MS.gene54388:intron 35.0%
ACAGGGCAGAAATAACATAA+CGG + chr7.4:93241578-93241597 None:intergenic 35.0%
AGCAGTTCCCATAAAGAAAA+TGG + chr7.4:93241477-93241496 None:intergenic 35.0%
AGCTCTGTAAATGACCATTA+AGG + chr7.4:93243278-93243297 None:intergenic 35.0%
ATAGCAAAGGAAATGTGTCT+GGG - chr7.4:93244620-93244639 MS.gene54388:CDS 35.0%
ATTCAGAATTAGGGTCTGTT+AGG + chr7.4:93241361-93241380 None:intergenic 35.0%
ATTTGGTCCATTACAGACTA+AGG + chr7.4:93244477-93244496 None:intergenic 35.0%
CAAAAGATGAGAAGAAGCTA+AGG - chr7.4:93243522-93243541 MS.gene54388:intron 35.0%
CATAAGCAGTTGAGACTAAT+TGG + chr7.4:93241311-93241330 None:intergenic 35.0%
GAAATGCCTGTAACAAACAT+TGG + chr7.4:93243617-93243636 None:intergenic 35.0%
GAACATCCGAAAATACAACT+AGG + chr7.4:93242257-93242276 None:intergenic 35.0%
GAAGATAATCCAAACTAGTG+GGG + chr7.4:93241816-93241835 None:intergenic 35.0%
GACATTACTGAATGCATACA+AGG + chr7.4:93242533-93242552 None:intergenic 35.0%
GCCACAGAAAATCCAAAAAA+AGG + chr7.4:93243639-93243658 None:intergenic 35.0%
GCTTAAATCTATTCACTGGT+CGG - chr7.4:93243315-93243334 MS.gene54388:intron 35.0%
GGAAGATAATCCAAACTAGT+GGG + chr7.4:93241817-93241836 None:intergenic 35.0%
TAAACAATACCCCACTAGTT+TGG - chr7.4:93241804-93241823 MS.gene54388:intron 35.0%
TAACAGACCCTAATTCTGAA+TGG - chr7.4:93241360-93241379 MS.gene54388:intron 35.0%
TCTTTATGGGAACTGCTTAT+GGG - chr7.4:93241480-93241499 MS.gene54388:CDS 35.0%
TGCCCTGATACATAAAAAGA+TGG + chr7.4:93242779-93242798 None:intergenic 35.0%
TGGAAGATAATCCAAACTAG+TGG + chr7.4:93241818-93241837 None:intergenic 35.0%
TGGTAAGTGAGTATCTTTGA+TGG - chr7.4:93241717-93241736 MS.gene54388:intron 35.0%
TTCTTTATGGGAACTGCTTA+TGG - chr7.4:93241479-93241498 MS.gene54388:CDS 35.0%
TTTAGAAAGGACTGTGATGT+TGG + chr7.4:93240837-93240856 None:intergenic 35.0%
! ACGTGTGTGCATAAGTTTTT+AGG + chr7.4:93242326-93242345 None:intergenic 35.0%
! AGACTAATTGGCAAAGCTTT+TGG + chr7.4:93241299-93241318 None:intergenic 35.0%
! CCTTGTCCTAGTTGTATTTT+CGG - chr7.4:93242248-93242267 MS.gene54388:intron 35.0%
! CTTATGGGAAGTATAAGAGA+TGG - chr7.4:93241495-93241514 MS.gene54388:CDS 35.0%
! GAGCCATCTTTTTATGTATC+AGG - chr7.4:93242773-93242792 MS.gene54388:intron 35.0%
! GATGTGGAAGCAAATTTTCT+TGG - chr7.4:93241697-93241716 MS.gene54388:intron 35.0%
! TGTGGCTTTTGCTAAAATCA+CGG - chr7.4:93244327-93244346 MS.gene54388:CDS 35.0%
! TGTTTCTAATACAGGCGAAA+TGG - chr7.4:93241647-93241666 MS.gene54388:intron 35.0%
! TTTTATAAGCTATCCAGGAG+AGG - chr7.4:93241254-93241273 MS.gene54388:intron 35.0%
!! ACATTAATTGGCCTTGCTTT+AGG - chr7.4:93240543-93240562 MS.gene54388:CDS 35.0%
!! ATCATGGGCCATTTTCTTTA+TGG - chr7.4:93241466-93241485 MS.gene54388:intron 35.0%
!! ATTATGCTTTCCAGGTTGAT+TGG - chr7.4:93244013-93244032 MS.gene54388:intron 35.0%
!! CTTATTTTCATTACCTCTCC+TGG + chr7.4:93241270-93241289 None:intergenic 35.0%
!! TCATGGGCCATTTTCTTTAT+GGG - chr7.4:93241467-93241486 MS.gene54388:intron 35.0%
!!! CTGTTGGGATTCTTTTTTTC+TGG - chr7.4:93244119-93244138 MS.gene54388:intron 35.0%
AAACTCACTGCAAGTGTTTC+AGG - chr7.4:93242751-93242770 MS.gene54388:intron 40.0%
AAATACAACTAGGACAAGGC+CGG + chr7.4:93242247-93242266 None:intergenic 40.0%
ACAGACCCTAATTCTGAATG+GGG - chr7.4:93241362-93241381 MS.gene54388:intron 40.0%
ACTGAGAAGATCCCATAATC+TGG + chr7.4:93241838-93241857 None:intergenic 40.0%
AGAAAATGGCCCATGATTGA+AGG + chr7.4:93241463-93241482 None:intergenic 40.0%
AGTAGTACATCCAATCAACC+TGG + chr7.4:93244026-93244045 None:intergenic 40.0%
AGTTCAGCAACTCATAGCAA+AGG - chr7.4:93244607-93244626 MS.gene54388:CDS 40.0%
ATGGCAATGTTAGGTCTCTT+TGG - chr7.4:93243158-93243177 MS.gene54388:intron 40.0%
ATTCGTACCTTAAGCAGAAC+AGG + chr7.4:93243687-93243706 None:intergenic 40.0%
CACCTTATGAACAGTTGTGA+AGG - chr7.4:93242086-93242105 MS.gene54388:intron 40.0%
CACTTAATTAAGGGTCCGTT+TGG + chr7.4:93241161-93241180 None:intergenic 40.0%
CATAGCAAAGGAAATGTGTC+TGG - chr7.4:93244619-93244638 MS.gene54388:CDS 40.0%
CCGAAAATACAACTAGGACA+AGG + chr7.4:93242251-93242270 None:intergenic 40.0%
CTACAGAAGAAAGCCTCTAA+AGG - chr7.4:93240896-93240915 MS.gene54388:intron 40.0%
GAAAATGGCCCATGATTGAA+GGG + chr7.4:93241462-93241481 None:intergenic 40.0%
GAATAAGCAAGCACCTTTAG+AGG + chr7.4:93240912-93240931 None:intergenic 40.0%
GATGCCTTCAAAGCAATACA+AGG - chr7.4:93243469-93243488 MS.gene54388:CDS 40.0%
GGTGTAATTGTTTGCATAGC+CGG - chr7.4:93242225-93242244 MS.gene54388:intron 40.0%
GGTTGATTGGATGTACTACT+TGG - chr7.4:93244026-93244045 MS.gene54388:intron 40.0%
GTAAATGCAAGCCCATAAGT+AGG + chr7.4:93242924-93242943 None:intergenic 40.0%
GTAGCAAACCCTTCAATCAT+GGG - chr7.4:93241451-93241470 MS.gene54388:intron 40.0%
GTCTGAATAGACGATGAGTT+TGG + chr7.4:93244372-93244391 None:intergenic 40.0%
GTTCTTCAACAGCATTAGCA+GGG + chr7.4:93244558-93244577 None:intergenic 40.0%
TAGCATCACACTTGTAAGTG+AGG + chr7.4:93242124-93242143 None:intergenic 40.0%
TATTTCGTCTCACAGCTCAA+CGG - chr7.4:93243814-93243833 MS.gene54388:intron 40.0%
TCAGCATTGTCAATCGTGTT+GGG - chr7.4:93244283-93244302 MS.gene54388:CDS 40.0%
TGAATAGACGATGAGTTTGG+TGG + chr7.4:93244369-93244388 None:intergenic 40.0%
TGACAGTGAGAGGAAAAACA+GGG + chr7.4:93241595-93241614 None:intergenic 40.0%
TGCATTCAGTAATGTCAGTG+AGG - chr7.4:93242537-93242556 MS.gene54388:intron 40.0%
TGCCTTCACAACTGTTCATA+AGG + chr7.4:93242091-93242110 None:intergenic 40.0%
TGTAGCAAACCCTTCAATCA+TGG - chr7.4:93241450-93241469 MS.gene54388:intron 40.0%
TTCGTACCTTAAGCAGAACA+GGG + chr7.4:93243686-93243705 None:intergenic 40.0%
TTGACAGTGAGAGGAAAAAC+AGG + chr7.4:93241596-93241615 None:intergenic 40.0%
TTTAAACGGTTGACAGTGAG+AGG + chr7.4:93241605-93241624 None:intergenic 40.0%
! ACAGCCTTGTATTGCTTTGA+AGG + chr7.4:93243476-93243495 None:intergenic 40.0%
! GTATTTTCGGATGTTCATGC+TGG - chr7.4:93242261-93242280 MS.gene54388:intron 40.0%
! TTTGCTATGAGTTGCTGAAC+TGG + chr7.4:93244608-93244627 None:intergenic 40.0%
!! ACAGAAGTGTTTGTGCTGTA+TGG + chr7.4:93241190-93241209 None:intergenic 40.0%
!! ACTTCTTGGATTGGTTGATG+TGG - chr7.4:93241681-93241700 MS.gene54388:intron 40.0%
AAATCTATTCACTGGTCGGC+TGG - chr7.4:93243319-93243338 MS.gene54388:intron 45.0%
AATCTATTCACTGGTCGGCT+GGG - chr7.4:93243320-93243339 MS.gene54388:intron 45.0%
ACAAGAACGTCTCCTAAACG+AGG + chr7.4:93242496-93242515 None:intergenic 45.0%
AGAACCTGTTGCAATCAGAC+AGG - chr7.4:93244573-93244592 MS.gene54388:CDS 45.0%
ATTGCCTGTGGCCTACTTAT+GGG - chr7.4:93242910-93242929 MS.gene54388:CDS 45.0%
CAGCATTGTCAATCGTGTTG+GGG - chr7.4:93244284-93244303 MS.gene54388:CDS 45.0%
CATCTTCGCTTACCATGAGA+AGG - chr7.4:93243894-93243913 MS.gene54388:intron 45.0%
CTCAGCATTGTCAATCGTGT+TGG - chr7.4:93244282-93244301 MS.gene54388:CDS 45.0%
GAAGAGCTCATGGCAATGTT+AGG - chr7.4:93243149-93243168 MS.gene54388:intron 45.0%
GATCTTTCCATGATTGCCTG+TGG - chr7.4:93242898-93242917 MS.gene54388:CDS 45.0%
GATGTTTCGTCGTATTGCAG+AGG - chr7.4:93244511-93244530 MS.gene54388:intron 45.0%
GCAATGTTAGGTCTCTTTGG+TGG - chr7.4:93243161-93243180 MS.gene54388:intron 45.0%
GGTGGAAGTAATCCTCGTTT+AGG - chr7.4:93242481-93242500 MS.gene54388:intron 45.0%
GGTTCTTCAACAGCATTAGC+AGG + chr7.4:93244559-93244578 None:intergenic 45.0%
GTTACTGACAGACCTTCTCA+TGG + chr7.4:93243909-93243928 None:intergenic 45.0%
TAAGACAGACCACATGTCTG+AGG + chr7.4:93243869-93243888 None:intergenic 45.0%
TATAAAGCCACCTACCTGCA+CGG + chr7.4:93242290-93242309 None:intergenic 45.0%
TCATCCTGTCTGATTGCAAC+AGG + chr7.4:93244580-93244599 None:intergenic 45.0%
TCTAGTCCCTGTTCTGCTTA+AGG - chr7.4:93243677-93243696 MS.gene54388:intron 45.0%
TCTCTTCTCATCACTGCTAC+TGG - chr7.4:93240576-93240595 MS.gene54388:CDS 45.0%
TGCTGATAGAGAAGAGCTCA+TGG - chr7.4:93243139-93243158 MS.gene54388:intron 45.0%
TGGATGTACTACTTGGCGTT+TGG - chr7.4:93244033-93244052 MS.gene54388:intron 45.0%
TGTTGCAATCAGACAGGATG+AGG - chr7.4:93244579-93244598 MS.gene54388:CDS 45.0%
! GGCTTTTGCTAAAATCACGG+TGG - chr7.4:93244330-93244349 MS.gene54388:CDS 45.0%
! TCGTCGTATTGCAGAGGTTT+TGG - chr7.4:93244517-93244536 MS.gene54388:intron 45.0%
AAGCAGCATGACGCATGGAA+TGG + chr7.4:93242160-93242179 None:intergenic 50.0%
AAGTAGGCCACAGGCAATCA+TGG + chr7.4:93242908-93242927 None:intergenic 50.0%
ATCTATTCACTGGTCGGCTG+GGG - chr7.4:93243321-93243340 MS.gene54388:intron 50.0%
CATGTAAGCAGCATGACGCA+TGG + chr7.4:93242165-93242184 None:intergenic 50.0%
CTCTTCTGACCTCAGACATG+TGG - chr7.4:93243857-93243876 MS.gene54388:intron 50.0%
GATTGCCTGTGGCCTACTTA+TGG - chr7.4:93242909-93242928 MS.gene54388:CDS 50.0%
GTCTGGGAGCTCAAAAACCT+GGG - chr7.4:93244636-93244655 MS.gene54388:CDS 50.0%
TGTCTGGGAGCTCAAAAACC+TGG - chr7.4:93244635-93244654 MS.gene54388:CDS 50.0%
! CATGCGTCATGCTGCTTACA+TGG - chr7.4:93242163-93242182 MS.gene54388:intron 50.0%
! GGAGACGTTCTTGTTATCGC+TGG - chr7.4:93242502-93242521 MS.gene54388:intron 50.0%
! GTGTGATGCTACTTGACTGC+TGG - chr7.4:93242133-93242152 MS.gene54388:intron 50.0%
!! GCGTTTGGTGCTGTTGTCAT+TGG - chr7.4:93244048-93244067 MS.gene54388:intron 50.0%
!!! TTGCAGAGGTTTTGGAGACG+AGG - chr7.4:93244525-93244544 MS.gene54388:intron 50.0%
CAAGCCCATAAGTAGGCCAC+AGG + chr7.4:93242917-93242936 None:intergenic 55.0%
ATGCTGGTGACCGTGCAGGT+AGG - chr7.4:93242277-93242296 MS.gene54388:intron 60.0%
GTTCATGCTGGTGACCGTGC+AGG - chr7.4:93242273-93242292 MS.gene54388:intron 60.0%
CTGGTGACCGTGCAGGTAGG+TGG - chr7.4:93242280-93242299 MS.gene54388:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 93240507 93244666 93240507 ID=MS.gene54388
chr7.4 mRNA 93240507 93244666 93240507 ID=MS.gene54388.t1;Parent=MS.gene54388
chr7.4 exon 93244546 93244666 93244546 ID=MS.gene54388.t1.exon1;Parent=MS.gene54388.t1
chr7.4 CDS 93244546 93244666 93244546 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
chr7.4 exon 93244256 93244350 93244256 ID=MS.gene54388.t1.exon2;Parent=MS.gene54388.t1
chr7.4 CDS 93244256 93244350 93244256 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
chr7.4 exon 93243455 93243512 93243455 ID=MS.gene54388.t1.exon3;Parent=MS.gene54388.t1
chr7.4 CDS 93243455 93243512 93243455 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
chr7.4 exon 93242879 93243073 93242879 ID=MS.gene54388.t1.exon4;Parent=MS.gene54388.t1
chr7.4 CDS 93242879 93243073 93242879 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
chr7.4 exon 93242615 93242691 93242615 ID=MS.gene54388.t1.exon5;Parent=MS.gene54388.t1
chr7.4 CDS 93242615 93242691 93242615 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
chr7.4 exon 93241969 93242051 93241969 ID=MS.gene54388.t1.exon6;Parent=MS.gene54388.t1
chr7.4 CDS 93241969 93242051 93241969 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
chr7.4 exon 93241828 93241879 93241828 ID=MS.gene54388.t1.exon7;Parent=MS.gene54388.t1
chr7.4 CDS 93241828 93241879 93241828 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
chr7.4 exon 93241475 93241543 93241475 ID=MS.gene54388.t1.exon8;Parent=MS.gene54388.t1
chr7.4 CDS 93241475 93241543 93241475 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
chr7.4 exon 93241258 93241344 93241258 ID=MS.gene54388.t1.exon9;Parent=MS.gene54388.t1
chr7.4 CDS 93241258 93241344 93241258 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
chr7.4 exon 93241085 93241146 93241085 ID=MS.gene54388.t1.exon10;Parent=MS.gene54388.t1
chr7.4 CDS 93241085 93241146 93241085 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
chr7.4 exon 93240507 93240642 93240507 ID=MS.gene54388.t1.exon11;Parent=MS.gene54388.t1
chr7.4 CDS 93240507 93240642 93240507 ID=cds.MS.gene54388.t1;Parent=MS.gene54388.t1
Gene Sequence

>MS.gene54388

ATGATGATGGATATTAAGAAATATTGGACTAAGAACACATTAATTGGCCTTGCTTTAGGTCAATTTCTTTCTCTTCTCATCACTGCTACTGGTTTCGCTTCTTCTGATTTAGCTAAAAAAGGTCTTAATTCTCTCTCTCTCTCTCTCTTTTTCACTTCCTTTTAATTACTTTGGTCATGACATTAAAGTGAATTTTTGTTTTGTTTTGTTTTGATTTTAAACTAAAATTTTTCATTATAAAATAAAATAAAATTTCTATGCTTATTTGTTTTTAATAGCTGCTAATACAATATTATTTTTTGTCGTCTTATGGTAGGAATTAATGCTCCAACATCACAGTCCTTTCTAAATTATGTGTTTTTGATGATTGTCTATGGAACTATTCTACTCTACAGAAGAAAGCCTCTAAAGGTGCTTGCTTATTCTTATGTACTCTATTTGGAAAAACAGCTTAATTTGCTGCTTATGTATAAGCCATTTCTATTCTAAAAACGTTAAATTATTTTTGTGCAAGCTATAATCTGTTTTCATAGAGCTTGCGAAACTAAGCTGAAAACAGCTTATGAACATGTCATATGTTTTCTTCATAAGTTCTCTCAAGTAGCCGCAAAAATGTTTATGCTAGCAGTAGATAAGCTCAAATAAGTCAATCCAAACGGACCCTTAATTAAGTGCTTATGCCATACAGCACAAACACTTCTGTATAAACTATTTTTGTAACAGTACGTAAAATTAAGTCAAACTGTTTTTTATAAGCTATCCAGGAGAGGTAATGAAAATAAGTTGTTACCAAAAGCTTTGCCAATTAGTCTCAACTGCTTATGTTAATATATAAGCTCAATTAAGTCACTCCTAACAGACCCTAATTCTGAATGGGGTTTTATTATTTTCTAAAGAGGCCAATGTTGAGATGCTAGTTTTTACAATATTTATTGCAAGTGTATGTAGCAAACCCTTCAATCATGGGCCATTTTCTTTATGGGAACTGCTTATGGGAAGTATAAGAGATGGTTTTCTTTTATATCTGCAATGAAAATTGTTTGGAGTTCTGTCTTTCAAAATGATCAACCGTTATGTTATTTCTGCCCTGTTTTTCCTCTCACTGTCAACCGTTTAAAGACATTTTTGTTAACTTCATATTGTTTCTAATACAGGCGAAATGGTACTATTATATACTTCTTGGATTGGTTGATGTGGAAGCAAATTTTCTTGGTAAGTGAGTATCTTTGATGGTAGCGATATGATCGATATTTAGAAAGCATTGGTCATATCGATACATTTATATTTGTAGTCTGCTTAAACAATACCCCACTAGTTTGGATTATCTTCCAGATTATGGGATCTTCTCAGTTGAAATAAGTCTTTAGGTTCTAATTTATGAGGACAAAAAACCTAATAAGTTTATAGGTGTTTATGGAAAAGTTGAAGTGCATAAGTTGTTTTCAACTACTGAGAGACGCATTCAGTTATAACACTCAAAATCATTTGAAATTGTCAAAAAGTTTAACCAAACTAGCTTTATGTTGACTTTTTTTTTTTTTTTTTGTCTTAGTTTCAATGACACTAACAGAACAATTTTCACCTTATGAACAGTTGTGAAGGCATATCAATACACCTCACTTACAAGTGTGATGCTACTTGACTGCTGGTCCATTCCATGCGTCATGCTGCTTACATGGATTTTCTTGAAAACAAAATATAGATTCAAGAAGATAACTGGTGTAATTGTTTGCATAGCCGGCCTTGTCCTAGTTGTATTTTCGGATGTTCATGCTGGTGACCGTGCAGGTAGGTGGCTTTATATCTTATGACTATACCTAAAAACTTATGCACACACGTCTGCTCAACTGCATTCTCCATATATTTTTTCTTGGAAGTCATGCAGTGAGTAAAATTTGATCCTATCTTTTATTATGATCAGTAGCATGCATCATTCCATTTATCATGTTTGTCTGATGATATTATCATATCATAGGTGGAAGTAATCCTCGTTTAGGAGACGTTCTTGTTATCGCTGGCGCTACCTTGTATGCATTCAGTAATGTCAGTGAGGTAAGCTGATTGCACTTGTGCTTTTATGCATTTTGCAACACTTTGGCAATCAACAATGCAGAAAAACAACACAATAAATACATATACTCACTAGTTATTAGTATTGAAAAGGTTGGTTACTAAAAAAAGATTGCACTTTTCTGTCATCTTAATGTTCGTTTTCATTAGGCGGTTTGTTTTGAAACGTCGTTTAAACTCACTGCAAGTGTTTCAGGAGCCATCTTTTTATGTATCAGGGCACTTAGTTCAACCATGCTCATTATTATATTCAGAATAAACTTTTTAATTATTAAAATGTTAGTAGTAATAGAAAATTTGATTAATCTAAAACAATACACAGATCTTTCCATGATTGCCTGTGGCCTACTTATGGGCTTGCATTTACTGTCCATAGTTTCTTGTCAAACTGAATTTCATTCAAACGGAAAAAATTGTTATGTTGAATTTGGGGAAAATATTTAAGTTCTTTCACATCACTTTTTTTATGCACTTGCGTCACTTCATATTATTGTTTCATTGTGTATAATCTCTCCCGTGTTATTGTTATTTTGTTTCCATTGCAGGAGTTTTTAGTAAAAAATGCTGATAGAGAAGAGCTCATGGCAATGTTAGGTCTCTTTGGTGGCATCATCAGTGCCATTCAAATGTATCCTTGAAAGTTGATTATATATTGAGGACTATTGGCGCTTTTTGTTACTTTTGTTTTCATTTTGAAGCCTTAATGGTCATTTACAGAGCTATACTTGAGCGCAATGAGCTTAAATCTATTCACTGGTCGGCTGGGGCAGTAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATAATTTAGTAATTTACAGAGTTTCTCTTTAATTAAGACAGATGCCTTCAAAGCAATACAAGGCTGTGAATTCAAAAGTTTATGATTTTATAACAAAAGATGAGAAGAAGCTAAGGAAGTTTGTCACAATATGCCAATTAGTTTGATATATGAACTGTAAGTATTGTTATTGATGTTAATATCTTCCAATGTTTGTTACAGGCATTTCCTTTTTTTGGATTTTCTGTGGCTATGTTTTTGTTTTACTCTCTAGTCCCTGTTCTGCTTAAGGTACGAATTTAAACATAAGGATTCTAAAGATTTTGGTTTAGCTTAGAAAAAATATTGTCTCTGTTATAAATATCGAGCTTTTTACGGGAAACTGATATTTTTAAATGTGCTCTGTTATTTCGTCTCACAGCTCAACGGTTCTACTATGCTAAATCTGTCTCTTCTGACCTCAGACATGTGGTCTGTCTTAATTCGCATCTTCGCTTACCATGAGAAGGTCTGTCAGTAACCTTACTTCCTTTTTATCTATCTCACAGAAAAATTCCTACTAATTATGAGTCACAAATTTTAGTTTGCTAACATCTCTAGAACTAATTATGCTTTCCAGGTTGATTGGATGTACTACTTGGCGTTTGGTGCTGTTGTCATTGGCATTGTTATCTACTCTATGTACGTATTGTTGCACTTTCATTTCTTGTTCTGTTGGGATTCTTTTTTTCTGGTATTTTTTCAAAATGAATGATTTCAAAACTGATTTAGCTAGTTCTTCAATGTTATTACAAAACTGATTTAGCTAGTTCTTCAATGTTATTATGTAAGTTAATGTCTGCAATAAATAACAATGATCAACTAAAAGCACAGTCTCAGCATTGTCAATCGTGTTGGGGATTTATGTTTATTATCAAAGTGTGGCTTTTGCTAAAATCACGGTGGTCTCACTGTGATTCCACCAAACTCATCGTCTATTCAGACATGCATGAAACTTATTTAAGGAATTAGAGACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGATATCCTTAGTCTGTAATGGACCAAATATTTTTTTTCTTATGATGTTTCGTCGTATTGCAGAGGTTTTGGAGACGAGGATCAACACCCTGCTAATGCTGTTGAAGAACCTGTTGCAATCAGACAGGATGAGGAAGCCAGTTCAGCAACTCATAGCAAAGGAAATGTGTCTGGGAGCTCAAAAACCTGGGTAGCTTAA

Protein sequence

>MS.gene54388.t1

MMMDIKKYWTKNTLIGLALGQFLSLLITATGFASSDLAKKGINAPTSQSFLNYVFLMIVYGTILLYRRKPLKAKWYYYILLGLVDVEANFLVVKAYQYTSLTSVMLLDCWSIPCVMLLTWIFLKTKYRFKKITGVIVCIAGLVLVVFSDVHAGDRAGGSNPRLGDVLVIAGATLYAFSNVSEEFLVKNADREELMAMLGLFGGIISAIQIAILERNELKSIHWSAGAAFPFFGFSVAMFLFYSLVPVLLKLNGSTMLNLSLLTSDMWSVLIRIFAYHEKVDWMYYLAFGAVVIGIVIYSIGFGDEDQHPANAVEEPVAIRQDEEASSATHSKGNVSGSSKTWVA