Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54766.t1 | AFK42270.1 | 94.2 | 381 | 13 | 1 | 1 | 372 | 1 | 381 | 1.40E-169 | 605.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54766.t1 | Q8VBT1 | 27.6 | 217 | 146 | 2 | 166 | 371 | 210 | 426 | 2.1e-12 | 75.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54766.t1 | G7I9L2 | 94.2 | 381 | 13 | 1 | 1 | 372 | 1 | 381 | 1.0e-169 | 605.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene54766 | 0.812422 | 4.27E-51 | -1.69E-46 |
MS.gene049178 | MS.gene54766 | 0.820127 | 8.08E-53 | -1.69E-46 |
MS.gene049208 | MS.gene54766 | 0.805756 | 1.14E-49 | -1.69E-46 |
MS.gene049786 | MS.gene54766 | 0.811032 | 8.57E-51 | -1.69E-46 |
MS.gene050114 | MS.gene54766 | 0.825816 | 3.81E-54 | -1.69E-46 |
MS.gene050253 | MS.gene54766 | 0.806412 | 8.33E-50 | -1.69E-46 |
MS.gene050317 | MS.gene54766 | 0.809689 | 1.67E-50 | -1.69E-46 |
MS.gene050439 | MS.gene54766 | 0.83374 | 4.48E-56 | -1.69E-46 |
MS.gene050838 | MS.gene54766 | 0.827191 | 1.79E-54 | -1.69E-46 |
MS.gene051676 | MS.gene54766 | 0.834713 | 2.56E-56 | -1.69E-46 |
MS.gene051700 | MS.gene54766 | 0.835619 | 1.51E-56 | -1.69E-46 |
MS.gene051746 | MS.gene54766 | 0.822533 | 2.25E-53 | -1.69E-46 |
MS.gene051748 | MS.gene54766 | 0.824385 | 8.31E-54 | -1.69E-46 |
MS.gene051757 | MS.gene54766 | 0.807694 | 4.46E-50 | -1.69E-46 |
MS.gene051790 | MS.gene54766 | 0.800402 | 1.47E-48 | -1.69E-46 |
MS.gene051903 | MS.gene54766 | 0.804977 | 1.67E-49 | -1.69E-46 |
MS.gene051975 | MS.gene54766 | 0.829822 | 4.15E-55 | -1.69E-46 |
MS.gene052434 | MS.gene54766 | 0.809782 | 1.60E-50 | -1.69E-46 |
MS.gene052947 | MS.gene54766 | 0.812644 | 3.82E-51 | -1.69E-46 |
MS.gene053298 | MS.gene54766 | 0.812694 | 3.73E-51 | -1.69E-46 |
MS.gene053381 | MS.gene54766 | 0.834225 | 3.39E-56 | -1.69E-46 |
MS.gene053786 | MS.gene54766 | 0.818856 | 1.58E-52 | -1.69E-46 |
MS.gene05469 | MS.gene54766 | 0.805121 | 1.56E-49 | -1.69E-46 |
MS.gene055311 | MS.gene54766 | 0.822563 | 2.22E-53 | -1.69E-46 |
MS.gene055313 | MS.gene54766 | 0.823211 | 1.57E-53 | -1.69E-46 |
MS.gene055314 | MS.gene54766 | 0.808492 | 3.02E-50 | -1.69E-46 |
MS.gene055513 | MS.gene54766 | 0.825277 | 5.12E-54 | -1.69E-46 |
MS.gene055603 | MS.gene54766 | 0.869247 | 3.57E-66 | -1.69E-46 |
MS.gene056403 | MS.gene54766 | 0.818293 | 2.11E-52 | -1.69E-46 |
MS.gene056605 | MS.gene54766 | 0.808051 | 3.74E-50 | -1.69E-46 |
MS.gene056638 | MS.gene54766 | 0.833163 | 6.24E-56 | -1.69E-46 |
MS.gene056986 | MS.gene54766 | 0.83883 | 2.28E-57 | -1.69E-46 |
MS.gene057094 | MS.gene54766 | 0.822648 | 2.12E-53 | -1.69E-46 |
MS.gene057102 | MS.gene54766 | 0.816927 | 4.30E-52 | -1.69E-46 |
MS.gene057360 | MS.gene54766 | 0.83508 | 2.07E-56 | -1.69E-46 |
MS.gene057890 | MS.gene54766 | -0.800578 | 1.35E-48 | -1.69E-46 |
MS.gene059170 | MS.gene54766 | 0.817046 | 4.04E-52 | -1.69E-46 |
MS.gene059171 | MS.gene54766 | 0.819579 | 1.08E-52 | -1.69E-46 |
MS.gene059227 | MS.gene54766 | 0.845303 | 4.42E-59 | -1.69E-46 |
MS.gene059360 | MS.gene54766 | 0.805141 | 1.54E-49 | -1.69E-46 |
MS.gene059774 | MS.gene54766 | 0.811686 | 6.18E-51 | -1.69E-46 |
MS.gene06001 | MS.gene54766 | 0.811922 | 5.50E-51 | -1.69E-46 |
MS.gene06010 | MS.gene54766 | 0.804704 | 1.90E-49 | -1.69E-46 |
MS.gene06011 | MS.gene54766 | 0.849277 | 3.59E-60 | -1.69E-46 |
MS.gene060586 | MS.gene54766 | 0.800755 | 1.24E-48 | -1.69E-46 |
MS.gene060697 | MS.gene54766 | 0.810165 | 1.32E-50 | -1.69E-46 |
MS.gene060763 | MS.gene54766 | 0.818095 | 2.34E-52 | -1.69E-46 |
MS.gene060869 | MS.gene54766 | 0.812611 | 3.89E-51 | -1.69E-46 |
MS.gene060870 | MS.gene54766 | 0.801846 | 7.42E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54766.t1 | MTR_1g095640 | 95.070 | 426 | 12 | 1 | 1 | 417 | 1 | 426 | 0.0 | 797 |
MS.gene54766.t1 | MTR_1g101870 | 78.431 | 51 | 11 | 0 | 165 | 215 | 432 | 482 | 7.34e-17 | 83.6 |
MS.gene54766.t1 | MTR_1g101870 | 80.000 | 50 | 10 | 0 | 165 | 214 | 432 | 481 | 7.52e-17 | 83.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54766.t1 | AT5G50840 | 61.575 | 419 | 139 | 6 | 1 | 415 | 1 | 401 | 3.10e-151 | 434 |
MS.gene54766.t1 | AT5G50840 | 61.190 | 420 | 140 | 6 | 1 | 415 | 1 | 402 | 1.27e-150 | 433 |
Find 74 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGGAAGCTGGTTTGCTTC+TGG | 0.243236 | 1.2:-72783157 | None:intergenic |
ATTGATTGTGGTCATTCTAA+TGG | 0.258912 | 1.2:+72783292 | MS.gene54766:CDS |
GTAAAGGATGCATGTGCTTC+AGG | 0.259994 | 1.2:+72784585 | MS.gene54766:CDS |
CAACCACCTCTTCTTCATAT+TGG | 0.283834 | 1.2:-72790819 | None:intergenic |
CTGATGGGCTTCTCTTGTTC+AGG | 0.299542 | 1.2:-72783247 | None:intergenic |
AGAACAAGTATCTCAGTTAT+TGG | 0.302337 | 1.2:+72789702 | MS.gene54766:CDS |
GAAGCACATGCATCCTTTAC+AGG | 0.303336 | 1.2:-72784582 | None:intergenic |
TCCTGAAGTTGATTCATTGC+CGG | 0.363142 | 1.2:+72783174 | MS.gene54766:CDS |
GGCTTCTCTTGTTCAGGAGT+TGG | 0.369688 | 1.2:-72783241 | None:intergenic |
ATCGCTATGCCGGTCACTTC+AGG | 0.373308 | 1.2:+72790740 | MS.gene54766:CDS |
TGCTACAGGATGTGAGTATC+AGG | 0.375897 | 1.2:+72789086 | MS.gene54766:intron |
GTTGGAGTAGCAGGCGCAAC+AGG | 0.381038 | 1.2:-72783223 | None:intergenic |
GGTTGCAGCTAAACAACCTT+TGG | 0.383471 | 1.2:+72784545 | MS.gene54766:intron |
AGAGAAATTCCAACAGTTCC+AGG | 0.384564 | 1.2:+72789765 | MS.gene54766:CDS |
TTCAAACCTTGATTGCATCT+TGG | 0.400861 | 1.2:-72787797 | None:intergenic |
ACTATTATTACTCTTGTTCT+CGG | 0.407706 | 1.2:-72790784 | None:intergenic |
CAGAATAAATGTCACCTTCT+GGG | 0.408951 | 1.2:-72789496 | None:intergenic |
TCCGGCAATGAATCAACTTC+AGG | 0.416327 | 1.2:-72783175 | None:intergenic |
TTGCCGGATGGGTTTGTTGA+GGG | 0.434934 | 1.2:+72783190 | MS.gene54766:CDS |
CGTTCTCCTTTAGCTGAGAA+AGG | 0.449090 | 1.2:-72789132 | None:intergenic |
ACAGTTGAAGCAAAAGTCAT+TGG | 0.459008 | 1.2:+72789600 | MS.gene54766:intron |
AGTAGCAGGCGCAACAGGTT+CGG | 0.461107 | 1.2:-72783218 | None:intergenic |
ACTCAAGTATCAACAAGTAT+TGG | 0.464833 | 1.2:+72785199 | MS.gene54766:CDS |
ATAAGCTTGAGTCACTATGC+AGG | 0.470749 | 1.2:+72786148 | MS.gene54766:CDS |
TTTACATCATTGCTTCTGGA+TGG | 0.479292 | 1.2:-72783469 | None:intergenic |
TAAGTTCCAAGATGCAATCA+AGG | 0.480936 | 1.2:+72787791 | MS.gene54766:CDS |
TGTTCAGGAGTTGGAGTAGC+AGG | 0.487921 | 1.2:-72783232 | None:intergenic |
CGTTTGCAGCTGACAACTGA+TGG | 0.491667 | 1.2:+72789742 | MS.gene54766:CDS |
CCTCTCAGACTGCTCGGTGG+AGG | 0.491915 | 1.2:+72783402 | MS.gene54766:intron |
TGATTGCCTTTCTCAGCTAA+AGG | 0.494939 | 1.2:+72789126 | MS.gene54766:CDS |
ATGAATCAACTTCAGGAAGC+TGG | 0.495951 | 1.2:-72783168 | None:intergenic |
ATCCTCCTTGTAATCACTGA+TGG | 0.503982 | 1.2:-72783263 | None:intergenic |
CGAGCGCTTGAAGAAACAGC+TGG | 0.505935 | 1.2:+72790686 | MS.gene54766:CDS |
TAATGGATTATCAAACGTGC+CGG | 0.510915 | 1.2:+72783309 | MS.gene54766:CDS |
AATTACATTTATCTGAACTC+TGG | 0.517076 | 1.2:-72783513 | None:intergenic |
ACATGAGGAAAGATCTGCTC+AGG | 0.520293 | 1.2:+72789654 | MS.gene54766:CDS |
ATCAATGAAGGAACTCAAGA+AGG | 0.523923 | 1.2:+72790349 | MS.gene54766:CDS |
GAGGATGGTTTCATTGATTG+TGG | 0.524391 | 1.2:+72783280 | MS.gene54766:CDS |
GACAAAAGCACTGCCTGTAA+AGG | 0.524835 | 1.2:+72784569 | MS.gene54766:CDS |
GCGTGCACTTAAATCAGAAA+AGG | 0.525607 | 1.2:+72785160 | MS.gene54766:CDS |
GAAGTTGATTCATTGCCGGA+TGG | 0.529940 | 1.2:+72783178 | MS.gene54766:CDS |
CTCTCAGACTGCTCGGTGGA+GGG | 0.530354 | 1.2:+72783403 | MS.gene54766:intron |
TAAAGGATGCATGTGCTTCA+GGG | 0.531396 | 1.2:+72784586 | MS.gene54766:CDS |
TCCTCTCTGCCTGAAGTGAC+CGG | 0.533884 | 1.2:-72790749 | None:intergenic |
GTGCCCTCAACAAACCCATC+CGG | 0.536588 | 1.2:-72783193 | None:intergenic |
TCAGATGGCAAAATCAATGA+AGG | 0.543783 | 1.2:+72790337 | MS.gene54766:intron |
ATTGCCGGATGGGTTTGTTG+AGG | 0.550853 | 1.2:+72783189 | MS.gene54766:CDS |
AAGTTGATTCATTGCCGGAT+GGG | 0.555154 | 1.2:+72783179 | MS.gene54766:CDS |
GTATTGGCTGAAAGAGATGC+AGG | 0.555798 | 1.2:+72785215 | MS.gene54766:CDS |
GAAGCCCATCAGTGATTACA+AGG | 0.557693 | 1.2:+72783258 | MS.gene54766:CDS |
TCCTCCTTGTAATCACTGAT+GGG | 0.561879 | 1.2:-72783262 | None:intergenic |
ATCAGTGATTACAAGGAGGA+TGG | 0.564958 | 1.2:+72783265 | MS.gene54766:CDS |
GCGTCAAAATAAAATGCTGA+TGG | 0.573163 | 1.2:+72786179 | MS.gene54766:CDS |
CAACTGAGGGGCAAAACTTG+AGG | 0.580596 | 1.2:+72787754 | MS.gene54766:CDS |
TGCAAACGTGTATCAACTGA+GGG | 0.582847 | 1.2:+72787741 | MS.gene54766:CDS |
TGAGGGGCAAAACTTGAGGA+TGG | 0.583482 | 1.2:+72787758 | MS.gene54766:CDS |
GCTTCTGGATGGTTGAGACT+CGG | 0.585832 | 1.2:-72783458 | None:intergenic |
AATGGATTATCAAACGTGCC+GGG | 0.588211 | 1.2:+72783310 | MS.gene54766:CDS |
TGACTCAAGCTTATCTCTGA+CGG | 0.609729 | 1.2:-72786139 | None:intergenic |
AAAGAGCAACAACAAGGAGA+AGG | 0.611330 | 1.2:+72783490 | MS.gene54766:CDS |
TGAGCAGCAATATGCCCAGA+AGG | 0.617929 | 1.2:+72789482 | MS.gene54766:CDS |
TATCAGGCTCGAAGAACGAA+AGG | 0.619128 | 1.2:+72789102 | MS.gene54766:CDS |
TAAGCTTGAGTCACTATGCA+GGG | 0.636629 | 1.2:+72786149 | MS.gene54766:CDS |
ACTTATAGAGTTAGTTGACG+AGG | 0.647388 | 1.2:+72790415 | MS.gene54766:CDS |
ATTTAAACAAGAGATTGAGA+AGG | 0.652438 | 1.2:+72790197 | MS.gene54766:CDS |
GCCGGTCACTTCAGGCAGAG+AGG | 0.655548 | 1.2:+72790748 | MS.gene54766:CDS |
ATGCAAACGTGTATCAACTG+AGG | 0.661308 | 1.2:+72787740 | MS.gene54766:CDS |
GAGTAATAATAGTAACAACT+CGG | 0.668165 | 1.2:+72790794 | MS.gene54766:CDS |
GATGTAAAAGAGCAACAACA+AGG | 0.680608 | 1.2:+72783484 | MS.gene54766:CDS |
GGATGCATGTGCTTCAGGGA+TGG | 0.680755 | 1.2:+72784590 | MS.gene54766:CDS |
TCACCTCTCAGACTGCTCGG+TGG | 0.683389 | 1.2:+72783399 | MS.gene54766:intron |
TCGGAAACAGAACTAGCTAG+AGG | 0.687895 | 1.2:-72783439 | None:intergenic |
GCCCATCAGTGATTACAAGG+AGG | 0.736966 | 1.2:+72783261 | MS.gene54766:CDS |
GCAAACGTGTATCAACTGAG+GGG | 0.772676 | 1.2:+72787742 | MS.gene54766:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 72783148 | 72790827 | 72783148 | ID=MS.gene54766 |
chr1.2 | mRNA | 72783148 | 72790827 | 72783148 | ID=MS.gene54766.t1;Parent=MS.gene54766 |
chr1.2 | exon | 72783148 | 72783331 | 72783148 | ID=MS.gene54766.t1.exon1;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72783148 | 72783331 | 72783148 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72783410 | 72783529 | 72783410 | ID=MS.gene54766.t1.exon2;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72783410 | 72783529 | 72783410 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72784553 | 72784638 | 72784553 | ID=MS.gene54766.t1.exon3;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72784553 | 72784638 | 72784553 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72785131 | 72785236 | 72785131 | ID=MS.gene54766.t1.exon4;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72785131 | 72785236 | 72785131 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72786133 | 72786200 | 72786133 | ID=MS.gene54766.t1.exon5;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72786133 | 72786200 | 72786133 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72787735 | 72787812 | 72787735 | ID=MS.gene54766.t1.exon6;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72787735 | 72787812 | 72787735 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72789094 | 72789158 | 72789094 | ID=MS.gene54766.t1.exon7;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72789094 | 72789158 | 72789094 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72789437 | 72789503 | 72789437 | ID=MS.gene54766.t1.exon8;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72789437 | 72789503 | 72789437 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72789604 | 72789786 | 72789604 | ID=MS.gene54766.t1.exon9;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72789604 | 72789786 | 72789604 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72790162 | 72790218 | 72790162 | ID=MS.gene54766.t1.exon10;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72790162 | 72790218 | 72790162 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72790341 | 72790436 | 72790341 | ID=MS.gene54766.t1.exon11;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72790341 | 72790436 | 72790341 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
chr1.2 | exon | 72790684 | 72790827 | 72790684 | ID=MS.gene54766.t1.exon12;Parent=MS.gene54766.t1 |
chr1.2 | CDS | 72790684 | 72790827 | 72790684 | ID=cds.MS.gene54766.t1;Parent=MS.gene54766.t1 |
Gene Sequence |
Protein sequence |