AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56451


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 87 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCGTCAGTGGGAAAATT+TGG 0.205950 4.4:+29415473 None:intergenic
ACCTTGATGGTCGATACTTT+GGG 0.229758 4.4:-29415394 MS.gene56451:CDS
GATTCGAGATTGAATATTTC+CGG 0.238391 4.4:-29419941 MS.gene56451:CDS
GGGTTGGGAGTTGGTGCTGG+TGG 0.281207 4.4:-29419787 MS.gene56451:CDS
TAGAGATAGGGAGAGAGATC+AGG 0.283507 4.4:-29419966 MS.gene56451:CDS
AGACGGAAGGGAGGAGGAGG+AGG 0.312655 4.4:-29420036 None:intergenic
AAAGGGAGAGAGATAGAGAT+AGG 0.316661 4.4:-29419979 MS.gene56451:CDS
AGGGCAAGGGCTTGGGAAAC+AGG 0.324519 4.4:-29419716 MS.gene56451:CDS
AAAGCGCTTGTTGACCTTGA+TGG 0.335789 4.4:-29415407 MS.gene56451:CDS
TGGAAACAAGGGCAAGGGCT+TGG 0.353102 4.4:-29419724 MS.gene56451:CDS
GTGTGGATGGATTTAGTATT+GGG 0.354043 4.4:-29419825 MS.gene56451:CDS
GTTGGGTTGGGAGTTGGTGC+TGG 0.362932 4.4:-29419790 MS.gene56451:CDS
GGATCAGAATGTGCCAAGTA+TGG 0.369716 4.4:-29415533 MS.gene56451:CDS
TCGGGTTACTGTTCCATACT+TGG 0.373407 4.4:+29415520 None:intergenic
GGAAACAAGGGCAAGGGCTT+GGG 0.385410 4.4:-29419723 MS.gene56451:CDS
AAGTCGGAGACGGTTGGGTT+GGG 0.388880 4.4:-29419802 MS.gene56451:CDS
GAGACGGTTGGGTTGGGAGT+TGG 0.391170 4.4:-29419796 MS.gene56451:CDS
AGAGATAGGGAGAGAGATCA+GGG 0.413669 4.4:-29419965 MS.gene56451:CDS
AGGAGGAGAGGGAGAAGAGA+GGG 0.413674 4.4:-29420019 MS.gene56451:CDS
GACCTTGATGGTCGATACTT+TGG 0.416405 4.4:-29415395 MS.gene56451:CDS
GGTTGGGAGTTGGTGCTGGT+GGG 0.423146 4.4:-29419786 MS.gene56451:CDS
GAGAGGGAGAGAGAAGAGAA+AGG 0.426921 4.4:-29419997 MS.gene56451:CDS
CCGAGGTCGCCATCGCCTCC+CGG 0.432302 4.4:-29419850 MS.gene56451:intron
GAGAGGGAGAAGAGAGGGAG+AGG 0.441336 4.4:-29420014 MS.gene56451:CDS
TCGCCTCCCGGGAGTGTGGA+TGG 0.452371 4.4:-29419838 MS.gene56451:CDS
GAGGAGGAGAGGGAGAAGAG+AGG 0.453232 4.4:-29420020 MS.gene56451:CDS
GAGAGACGGAAGGGAGGAGG+AGG 0.453922 4.4:-29420039 None:intergenic
CTTATCAGACTTACTGTCAC+TGG 0.458476 4.4:+29419628 None:intergenic
TCAGAGGATGATGGCAAAGA+TGG 0.461946 4.4:-29419749 MS.gene56451:CDS
GAAGTCGGAGACGGTTGGGT+TGG 0.461972 4.4:-29419803 MS.gene56451:CDS
CCAGGAATTTCTCCTGGCAT+TGG 0.472680 4.4:+29415311 None:intergenic
AAGGGAGAGAGATAGAGATA+GGG 0.473212 4.4:-29419978 MS.gene56451:CDS
AGTGTGGATGGATTTAGTAT+TGG 0.474626 4.4:-29419826 MS.gene56451:CDS
TTGGGAAGTCGGAGACGGTT+GGG 0.475282 4.4:-29419807 MS.gene56451:CDS
CTGGAGAGACGGAAGGGAGG+AGG 0.475854 4.4:-29420042 None:intergenic
AGAGGGAGAGAGAAGAGAAA+GGG 0.478180 4.4:-29419996 MS.gene56451:CDS
GTTAAGAGTGTTAACATCAA+TGG 0.478275 4.4:-29419602 MS.gene56451:CDS
AGATGATGAGCTGGAAGATG+AGG 0.483402 4.4:-29415558 MS.gene56451:CDS
AGAGGGAGAAGAGAGGGAGA+GGG 0.486057 4.4:-29420013 MS.gene56451:CDS
CCAATGCCAGGAGAAATTCC+TGG 0.492382 4.4:-29415311 MS.gene56451:CDS
GCAAAGATGGGGTGGAAACA+AGG 0.492416 4.4:-29419736 MS.gene56451:CDS
AAGAAAACCGATAGACGGGC+TGG 0.499615 4.4:-29419665 MS.gene56451:intron
CTGTTCTTCTAGGTGAAGCC+AGG 0.500844 4.4:+29415293 None:intergenic
TGGATTTAGTATTGGGAAGT+CGG 0.501213 4.4:-29419818 MS.gene56451:CDS
ACTAAATCCATCCACACTCC+CGG 0.501604 4.4:+29419831 None:intergenic
CGAGGTCGCCATCGCCTCCC+GGG 0.503095 4.4:-29419849 MS.gene56451:intron
TCCACACTCCCGGGAGGCGA+TGG 0.508661 4.4:+29419841 None:intergenic
ATTCTTACTGCTTCGTCAGT+GGG 0.509933 4.4:+29415464 None:intergenic
CCTTGATGGTCGATACTTTG+GGG 0.511583 4.4:-29415393 MS.gene56451:CDS
GAAGCATGGAGAAGGCGTGT+GGG 0.521164 4.4:-29419914 MS.gene56451:CDS
AGAAAACCGATAGACGGGCT+GGG 0.532383 4.4:-29419664 MS.gene56451:intron
GGAAGCATGGAGAAGGCGTG+TGG 0.532520 4.4:-29419915 MS.gene56451:CDS
ATTGGGAAGTCGGAGACGGT+TGG 0.535983 4.4:-29419808 MS.gene56451:CDS
CCTTCTCCATGCTTCCTCAC+CGG 0.541141 4.4:+29419922 None:intergenic
CAGAGGATGATGGCAAAGAT+GGG 0.541874 4.4:-29419748 MS.gene56451:CDS
CTAAATCCATCCACACTCCC+GGG 0.550046 4.4:+29419832 None:intergenic
ATATTTCCGGTGAGGAAGCA+TGG 0.550675 4.4:-29419928 MS.gene56451:CDS
GTGAAGCCAGGAATTTCTCC+TGG 0.553408 4.4:+29415305 None:intergenic
AATGAGTTAGCTCCAATGCC+AGG 0.554584 4.4:-29415323 MS.gene56451:CDS
AGCTCATCATCTACCTCACC+AGG 0.554865 4.4:+29415569 None:intergenic
TTATCTCAAATATCAGAACT+CGG 0.555140 4.4:+29415501 None:intergenic
GTTTCTAAGTAGCAGTACTC+TGG 0.558301 4.4:+29419571 None:intergenic
GACTGCTGCTCAGAGGATGA+TGG 0.563308 4.4:-29419758 MS.gene56451:CDS
GCCATCGCCTCCCGGGAGTG+TGG 0.566180 4.4:-29419842 MS.gene56451:CDS
AAGCATGGAGAAGGCGTGTG+GGG 0.566374 4.4:-29419913 MS.gene56451:CDS
GAAAACCGATAGACGGGCTG+GGG 0.568144 4.4:-29419663 MS.gene56451:intron
TTTGAAGGTGGGGCCTGGTG+AGG 0.568793 4.4:-29415582 MS.gene56451:intron
CCGGTGAGGAAGCATGGAGA+AGG 0.570595 4.4:-29419922 MS.gene56451:CDS
GATTCTTACTGCTTCGTCAG+TGG 0.572897 4.4:+29415463 None:intergenic
TGGTGAGGTAGATGATGAGC+TGG 0.574351 4.4:-29415567 MS.gene56451:CDS
CAAAGATGGGGTGGAAACAA+GGG 0.583228 4.4:-29419735 MS.gene56451:CDS
TAGTATTGGGAAGTCGGAGA+CGG 0.588760 4.4:-29419812 MS.gene56451:CDS
AGCATGGAGAAGGCGTGTGG+GGG 0.592569 4.4:-29419912 MS.gene56451:CDS
CTTGTCCTCGTCGTAAAATG+TGG 0.599106 4.4:+29415355 None:intergenic
GGATGATGGCAAAGATGGGG+TGG 0.606439 4.4:-29419744 MS.gene56451:CDS
CTAAGTAGCAGTACTCTGGT+AGG 0.610209 4.4:+29419575 None:intergenic
CCCCAAAGTATCGACCATCA+AGG 0.612071 4.4:+29415393 None:intergenic
TATCTCAAATATCAGAACTC+GGG 0.612442 4.4:+29415502 None:intergenic
ATGGGGTGGAAACAAGGGCA+AGG 0.615661 4.4:-29419730 MS.gene56451:CDS
GATGAGCTGGAAGATGAGGT+AGG 0.638199 4.4:-29415554 MS.gene56451:CDS
GGCAGATGACTGCTGCTCAG+AGG 0.641609 4.4:-29419765 MS.gene56451:CDS
TGGGGTGGAAACAAGGGCAA+GGG 0.650980 4.4:-29419729 MS.gene56451:CDS
GAGATTGAATATTTCCGGTG+AGG 0.659798 4.4:-29419936 MS.gene56451:CDS
CTTGATGGTCGATACTTTGG+GGG 0.673875 4.4:-29415392 MS.gene56451:CDS
AGAGGATGATGGCAAAGATG+GGG 0.674521 4.4:-29419747 MS.gene56451:CDS
AGTACTGCTACTTAGAAACA+TGG 0.680250 4.4:-29419567 MS.gene56451:intron
AATCCATCCACACTCCCGGG+AGG 0.744351 4.4:+29419835 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATGTTTATAATTATTAATA+TGG - chr4.4:29418575-29418594 MS.gene56451:intron 10.0%
!!! AATAAATTAAACATCATTTT+AGG + chr4.4:29419696-29419715 None:intergenic 10.0%
!! TATATATTAGATTAGAAGAA+AGG - chr4.4:29416292-29416311 MS.gene56451:intron 15.0%
!! TCTCAATAAATTTAAAGAAT+TGG - chr4.4:29418108-29418127 MS.gene56451:intron 15.0%
!! AAAGAACTGTAATTCTTAAA+AGG + chr4.4:29418741-29418760 None:intergenic 20.0%
!! ATGACAAAAGATTAACAATA+AGG + chr4.4:29419642-29419661 None:intergenic 20.0%
!! GAAAGAATGAAAAAGAATTT+CGG + chr4.4:29418971-29418990 None:intergenic 20.0%
!! TTATTATGGAAAGAATTCAA+TGG + chr4.4:29417358-29417377 None:intergenic 20.0%
!! TTCAATGCCAATAAAAATAA+TGG + chr4.4:29418302-29418321 None:intergenic 20.0%
!! TTTAATGTTAAATGCTTGTT+TGG - chr4.4:29415794-29415813 MS.gene56451:intron 20.0%
!!! AAAGTATTTGGTAGAAATTA+CGG + chr4.4:29417618-29417637 None:intergenic 20.0%
!!! AATTTTCTGATTATATGACT+TGG - chr4.4:29418451-29418470 MS.gene56451:intron 20.0%
!!! ACATGTTCCATTATTTTTAT+TGG - chr4.4:29418292-29418311 MS.gene56451:intron 20.0%
!!! ATTTTATGGTTTAGTTTAGA+AGG - chr4.4:29418213-29418232 MS.gene56451:intron 20.0%
!!! ATTTTTATTGGCATTGAAAT+TGG - chr4.4:29418304-29418323 MS.gene56451:intron 20.0%
!!! GAAATTCTTTTTCATTCTTT+CGG - chr4.4:29418970-29418989 MS.gene56451:intron 20.0%
!!! TATTTCTTACTATGGAATTT+TGG - chr4.4:29418676-29418695 MS.gene56451:intron 20.0%
!!! TTCCTTTCATAATATTTTGA+AGG - chr4.4:29418912-29418931 MS.gene56451:intron 20.0%
!!! TTTTAATTTGAAAATAGCAC+AGG - chr4.4:29415984-29416003 MS.gene56451:intron 20.0%
! AAAATTGGTTGGAGATTTAT+AGG + chr4.4:29417519-29417538 None:intergenic 25.0%
! AATATGGTGTAGTTGTAAAT+CGG - chr4.4:29418591-29418610 MS.gene56451:intron 25.0%
! ATATTAGATTAGAAGAAAGG+AGG - chr4.4:29416295-29416314 MS.gene56451:intron 25.0%
! ATGATGTTAATACAGTATGA+GGG - chr4.4:29418549-29418568 MS.gene56451:intron 25.0%
! ATGTTACAAAGCAATTATGT+TGG + chr4.4:29417917-29417936 None:intergenic 25.0%
! CTCCTTCAAAATATTATGAA+AGG + chr4.4:29418917-29418936 None:intergenic 25.0%
! GCATTAATAATATGCAAATG+AGG + chr4.4:29419142-29419161 None:intergenic 25.0%
! TACCTATTACTATTGTGTTA+GGG + chr4.4:29416411-29416430 None:intergenic 25.0%
! TATAGAAACGTTGAAAGAAA+AGG - chr4.4:29416927-29416946 MS.gene56451:intron 25.0%
! TATGATGTTAATACAGTATG+AGG - chr4.4:29418548-29418567 MS.gene56451:intron 25.0%
! TCAATGAAAATAAGCTCATT+TGG + chr4.4:29418871-29418890 None:intergenic 25.0%
! TCATTCTTTCGGTAATTTAT+GGG - chr4.4:29418981-29419000 MS.gene56451:intron 25.0%
! TTAAATCTGATCTATTGCTT+TGG + chr4.4:29419183-29419202 None:intergenic 25.0%
! TTATCTCAAATATCAGAACT+CGG + chr4.4:29419830-29419849 None:intergenic 25.0%
! TTCATTCTTTCGGTAATTTA+TGG - chr4.4:29418980-29418999 MS.gene56451:intron 25.0%
! TTCTAACTCATAAAACAGAA+TGG + chr4.4:29416189-29416208 None:intergenic 25.0%
! TTTGCATATTATTAATGCTG+AGG - chr4.4:29419144-29419163 MS.gene56451:intron 25.0%
!! AAATTTTCTTAGAAAGAGGA+TGG - chr4.4:29419247-29419266 MS.gene56451:intron 25.0%
!! AATCTCCAACCAATTTTTAA+AGG - chr4.4:29417522-29417541 MS.gene56451:intron 25.0%
!! AATTTTCTTAGAAAGAGGAT+GGG - chr4.4:29419248-29419267 MS.gene56451:intron 25.0%
!! ATCTCCAACCAATTTTTAAA+GGG - chr4.4:29417523-29417542 MS.gene56451:intron 25.0%
!! ATGGTATATTTTCTTTCTTG+GGG - chr4.4:29418774-29418793 MS.gene56451:intron 25.0%
!! CATGGTATATTTTCTTTCTT+GGG - chr4.4:29418773-29418792 MS.gene56451:intron 25.0%
!! GAAGAAATTTTCTTAGAAAG+AGG - chr4.4:29419243-29419262 MS.gene56451:intron 25.0%
!! TACACAGACACATAATTTTA+TGG - chr4.4:29418199-29418218 MS.gene56451:intron 25.0%
!! TAGACCTTTCAAGAAAATTT+TGG - chr4.4:29417676-29417695 MS.gene56451:intron 25.0%
!! TTACTATGGAATTTTGGATT+AGG - chr4.4:29418682-29418701 MS.gene56451:intron 25.0%
!!! ATGCTTGTTTGTTATGAAAA+TGG + chr4.4:29418261-29418280 None:intergenic 25.0%
!!! TTATTGTTGCTTTGTTTTGA+AGG - chr4.4:29419731-29419750 MS.gene56451:CDS 25.0%
!!! TTTTATGTTTTGTTGGAGAT+TGG + chr4.4:29417025-29417044 None:intergenic 25.0%
!!! TTTTTAGAAGGAAGATTTCA+GGG + chr4.4:29417002-29417021 None:intergenic 25.0%
AAAATTCCACGTGATATTGA+TGG + chr4.4:29417269-29417288 None:intergenic 30.0%
AAACAATGTCTAACTAACAG+AGG + chr4.4:29416335-29416354 None:intergenic 30.0%
AAAGAATTCAATGGAGATTC+AGG + chr4.4:29417349-29417368 None:intergenic 30.0%
AAATGTCCCATGATAAATAC+TGG - chr4.4:29416895-29416914 MS.gene56451:intron 30.0%
AGATATTTGTGAGAAGAACA+AGG + chr4.4:29417586-29417605 None:intergenic 30.0%
AGTTGATCAATGTCAAACAA+AGG + chr4.4:29419223-29419242 None:intergenic 30.0%
AGTTGTAGTAACAAATGTCA+AGG - chr4.4:29416864-29416883 MS.gene56451:intron 30.0%
ATAAACGTTCTTAATCACAC+AGG - chr4.4:29416518-29416537 MS.gene56451:intron 30.0%
ATAATCGATATGACTACATC+CGG + chr4.4:29416063-29416082 None:intergenic 30.0%
ATAGGTAGTAGTATACAAAG+AGG - chr4.4:29416424-29416443 MS.gene56451:intron 30.0%
ATATGGTGTAGTTGTAAATC+GGG - chr4.4:29418592-29418611 MS.gene56451:intron 30.0%
ATCATGTAACGAAACTTGTA+AGG + chr4.4:29418077-29418096 None:intergenic 30.0%
ATGTTGTATGAACAAATGCT+AGG - chr4.4:29416703-29416722 MS.gene56451:intron 30.0%
ATTTCTACCAAATACTTTGC+TGG - chr4.4:29417620-29417639 MS.gene56451:intron 30.0%
CATTCTTTCGGTAATTTATG+GGG - chr4.4:29418982-29419001 MS.gene56451:intron 30.0%
CCAAGAAAGAAAATATACCA+TGG + chr4.4:29418775-29418794 None:intergenic 30.0%
CTACCTATTACTATTGTGTT+AGG + chr4.4:29416412-29416431 None:intergenic 30.0%
GATTCGAGATTGAATATTTC+CGG - chr4.4:29415387-29415406 MS.gene56451:CDS 30.0%
TAAACGTTCTTAATCACACA+GGG - chr4.4:29416519-29416538 MS.gene56451:intron 30.0%
TAGGTAGTAGTATACAAAGA+GGG - chr4.4:29416425-29416444 MS.gene56451:intron 30.0%
TATATTCAGAAACACAGTGA+AGG + chr4.4:29416250-29416269 None:intergenic 30.0%
TATCTCAAATATCAGAACTC+GGG + chr4.4:29419829-29419848 None:intergenic 30.0%
TATTACTATTGTGTTAGGGA+AGG + chr4.4:29416407-29416426 None:intergenic 30.0%
TCAACCAATAATTACAATGC+AGG + chr4.4:29419030-29419049 None:intergenic 30.0%
TCATGTAACGAAACTTGTAA+GGG + chr4.4:29418076-29418095 None:intergenic 30.0%
TGAATATTTGGCATATGATG+TGG - chr4.4:29416011-29416030 MS.gene56451:intron 30.0%
TGATGTTAATACAGTATGAG+GGG - chr4.4:29418550-29418569 MS.gene56451:intron 30.0%
TGTACTAAATCAAGTTCATC+TGG + chr4.4:29419588-29419607 None:intergenic 30.0%
TTAAAGAATTGGCCACTTAT+AGG - chr4.4:29418119-29418138 MS.gene56451:intron 30.0%
TTCAACGTTTCTATATTCTC+TGG + chr4.4:29416922-29416941 None:intergenic 30.0%
TTCCCTAACACAATAGTAAT+AGG - chr4.4:29416406-29416425 MS.gene56451:intron 30.0%
TTCTTTCCATAATAACTAGC+CGG - chr4.4:29417363-29417382 MS.gene56451:intron 30.0%
TTGTTCTTCTCACAAATATC+TGG - chr4.4:29417585-29417604 MS.gene56451:intron 30.0%
TTTCTACCAAATACTTTGCT+GGG - chr4.4:29417621-29417640 MS.gene56451:intron 30.0%
! AAAATAAGCTCATTTGGCTT+TGG + chr4.4:29418865-29418884 None:intergenic 30.0%
! AACATTCCAATTTTCACGAT+TGG + chr4.4:29419389-29419408 None:intergenic 30.0%
! ACCACCAAAATTTTCTTGAA+AGG + chr4.4:29417683-29417702 None:intergenic 30.0%
! ACCTTTCAAGAAAATTTTGG+TGG - chr4.4:29417679-29417698 MS.gene56451:intron 30.0%
! ATGGTTTAGTTTAGAAGGAA+GGG - chr4.4:29418218-29418237 MS.gene56451:intron 30.0%
! ATTTTCTTAGAAAGAGGATG+GGG - chr4.4:29419249-29419268 MS.gene56451:intron 30.0%
! CCATGGTATATTTTCTTTCT+TGG - chr4.4:29418772-29418791 MS.gene56451:intron 30.0%
! GTTAAATGCTTGTTTGGTTT+CGG - chr4.4:29415800-29415819 MS.gene56451:intron 30.0%
! TATATGACTTGGATGTATCT+TGG - chr4.4:29418462-29418481 MS.gene56451:intron 30.0%
! TATGGTTTAGTTTAGAAGGA+AGG - chr4.4:29418217-29418236 MS.gene56451:intron 30.0%
! TGGTATATTTTCTTTCTTGG+GGG - chr4.4:29418775-29418794 MS.gene56451:intron 30.0%
! TTTTAAACTGTTTAGGCACT+GGG - chr4.4:29419086-29419105 MS.gene56451:intron 30.0%
! TTTTTCATTCTTGCAAACAC+AGG - chr4.4:29417286-29417305 MS.gene56451:intron 30.0%
!! AACACATCACACTTTTTACT+AGG - chr4.4:29416148-29416167 MS.gene56451:intron 30.0%
!! GTTAAGAGTGTTAACATCAA+TGG - chr4.4:29415726-29415745 MS.gene56451:intron 30.0%
!! GTTTTTAGAAGGAAGATTTC+AGG + chr4.4:29417003-29417022 None:intergenic 30.0%
!! TGTGGCTTTATTTCTTACTA+TGG - chr4.4:29418668-29418687 MS.gene56451:intron 30.0%
!! TTAGTTGGTCAGTTTGTTTT+TGG - chr4.4:29416469-29416488 MS.gene56451:intron 30.0%
!! TTCTTTGAGTTGAATATCCA+TGG - chr4.4:29418755-29418774 MS.gene56451:intron 30.0%
!! TTTGGGGTTTTATGTTTTGT+TGG + chr4.4:29417032-29417051 None:intergenic 30.0%
!!! TCTAGTCAATTTTGACTTCT+TGG - chr4.4:29419436-29419455 MS.gene56451:intron 30.0%
!!! TCTGTTTTAGGTTTTTGTCA+GGG + chr4.4:29419333-29419352 None:intergenic 30.0%
!!! TTCTGTTTTAGGTTTTTGTC+AGG + chr4.4:29419334-29419353 None:intergenic 30.0%
AAACATCACGACTATTGACA+TGG - chr4.4:29418142-29418161 MS.gene56451:intron 35.0%
AACAAACAAGCATGCATCTA+TGG - chr4.4:29418268-29418287 MS.gene56451:intron 35.0%
AACAGCTTCCAAATTAAGTG+TGG + chr4.4:29416579-29416598 None:intergenic 35.0%
AACCTAAAGTTCCAGTATAC+AGG + chr4.4:29419552-29419571 None:intergenic 35.0%
AAGAACACAGTAATCTCATG+TGG - chr4.4:29416636-29416655 MS.gene56451:intron 35.0%
AATAAAGCCACAATCTATCC+AGG + chr4.4:29418660-29418679 None:intergenic 35.0%
AATCCCTGTGAATTACTCTT+GGG + chr4.4:29417772-29417791 None:intergenic 35.0%
AGAAATCAGAATCCCTCATA+TGG + chr4.4:29417844-29417863 None:intergenic 35.0%
AGCACAGGCTAATGAATATT+TGG - chr4.4:29415999-29416018 MS.gene56451:intron 35.0%
AGGTAGTAGTATACAAAGAG+GGG - chr4.4:29416426-29416445 MS.gene56451:intron 35.0%
ATAAAGCCACAATCTATCCA+GGG + chr4.4:29418659-29418678 None:intergenic 35.0%
ATACATTCCTTACCTTTGTC+AGG - chr4.4:29417470-29417489 MS.gene56451:intron 35.0%
ATTGATGGAGGAATATTCGA+GGG + chr4.4:29417254-29417273 None:intergenic 35.0%
CAAGTTTCGTTACATGATTG+AGG - chr4.4:29418079-29418098 MS.gene56451:intron 35.0%
CTAGGATTCATTAGCAGATT+GGG - chr4.4:29418617-29418636 MS.gene56451:intron 35.0%
CTTGAAACAAGTGATTCTTG+TGG + chr4.4:29417749-29417768 None:intergenic 35.0%
GAAACGTTGAAAGAAAAGGT+TGG - chr4.4:29416931-29416950 MS.gene56451:intron 35.0%
GAAATCAGAATCCCTCATAT+GGG + chr4.4:29417843-29417862 None:intergenic 35.0%
GCTCAATACTAGACATGTAA+TGG + chr4.4:29419497-29419516 None:intergenic 35.0%
GGTTGGAGATTTATAGGTTT+AGG + chr4.4:29417513-29417532 None:intergenic 35.0%
TACATTCAGTTGTTCCTTTC+AGG - chr4.4:29416967-29416986 MS.gene56451:intron 35.0%
TATTGATGGAGGAATATTCG+AGG + chr4.4:29417255-29417274 None:intergenic 35.0%
TCAATGTCCTGTTCTTAGAA+TGG - chr4.4:29418525-29418544 MS.gene56451:intron 35.0%
TCTCATGTGGAATATCTTTC+TGG - chr4.4:29416649-29416668 MS.gene56451:intron 35.0%
TCTGGACCAGTATTTATCAT+GGG + chr4.4:29416904-29416923 None:intergenic 35.0%
TCTTGCAAATGTAACGAGTA+AGG + chr4.4:29417549-29417568 None:intergenic 35.0%
TGAGATTACTGTGTTCTTTC+TGG + chr4.4:29416634-29416653 None:intergenic 35.0%
TGTAATTGAGGGATGTTAGT+TGG - chr4.4:29416454-29416473 MS.gene56451:intron 35.0%
TGTGCCTGCATTGTAATTAT+TGG - chr4.4:29419023-29419042 MS.gene56451:intron 35.0%
TTACTCGTTACATTTGCAAG+AGG - chr4.4:29417548-29417567 MS.gene56451:intron 35.0%
! AACAGTTTAAAACAGACGCA+AGG + chr4.4:29419078-29419097 None:intergenic 35.0%
! AAGGCCCTTTAAAAATTGGT+TGG + chr4.4:29417530-29417549 None:intergenic 35.0%
! AGGTTTAGGTTTCCACTAAT+GGG + chr4.4:29417499-29417518 None:intergenic 35.0%
! AGTACTGCTACTTAGAAACA+TGG - chr4.4:29415761-29415780 MS.gene56451:intron 35.0%
! AGTGTGGATGGATTTAGTAT+TGG - chr4.4:29415502-29415521 MS.gene56451:CDS 35.0%
! CATCATACCATTCTAAGAAC+AGG + chr4.4:29418535-29418554 None:intergenic 35.0%
! GAGTAAGGCCCTTTAAAAAT+TGG + chr4.4:29417534-29417553 None:intergenic 35.0%
! GTGTGGATGGATTTAGTATT+GGG - chr4.4:29415503-29415522 MS.gene56451:CDS 35.0%
! TAGGTTTAGGTTTCCACTAA+TGG + chr4.4:29417500-29417519 None:intergenic 35.0%
! TGGATTTAGTATTGGGAAGT+CGG - chr4.4:29415510-29415529 MS.gene56451:CDS 35.0%
! TGTCACAAGACTTCTGTTTT+AGG + chr4.4:29419345-29419364 None:intergenic 35.0%
! TTTAAACTGTTTAGGCACTG+GGG - chr4.4:29419087-29419106 MS.gene56451:intron 35.0%
!! AGCTTATTTTCATTGAGAGC+GGG - chr4.4:29418875-29418894 MS.gene56451:intron 35.0%
!! GAGCTTATTTTCATTGAGAG+CGG - chr4.4:29418874-29418893 MS.gene56451:intron 35.0%
!! GCGTCTGTTTTAAACTGTTT+AGG - chr4.4:29419079-29419098 MS.gene56451:intron 35.0%
!! GTTTTAAACTGTTTAGGCAC+TGG - chr4.4:29419085-29419104 MS.gene56451:intron 35.0%
!!! CTCATTGTCTTTTCAAGTGT+TGG - chr4.4:29418388-29418407 MS.gene56451:intron 35.0%
!!! GTTGGAGATTGGTTTTTAGA+AGG + chr4.4:29417014-29417033 None:intergenic 35.0%
!!! TGTTGCTTTGTTTTGAAGGT+GGG - chr4.4:29419735-29419754 MS.gene56451:CDS 35.0%
!!! TTCAGCTGCATTGTTTTGAT+GGG - chr4.4:29415893-29415912 MS.gene56451:intron 35.0%
!!! TTGTTGCTTTGTTTTGAAGG+TGG - chr4.4:29419734-29419753 MS.gene56451:CDS 35.0%
!!! TTTCAGCTGCATTGTTTTGA+TGG - chr4.4:29415892-29415911 MS.gene56451:intron 35.0%
!!! TTTGTGCTTGTTTTTGTGGT+GGG + chr4.4:29417879-29417898 None:intergenic 35.0%
AAAAGCTTGTGCCTGTATAC+TGG - chr4.4:29419538-29419557 MS.gene56451:intron 40.0%
AAAGGGAGAGAGATAGAGAT+AGG - chr4.4:29415349-29415368 MS.gene56451:CDS 40.0%
AAGAGAAGGGAGAGAAGATT+TGG + chr4.4:29417050-29417069 None:intergenic 40.0%
AAGCCCAAGAGTAATTCACA+GGG - chr4.4:29417766-29417785 MS.gene56451:intron 40.0%
AAGGGAGAGAGATAGAGATA+GGG - chr4.4:29415350-29415369 MS.gene56451:CDS 40.0%
AATGCAGGCACAAAGTCAAA+AGG + chr4.4:29419015-29419034 None:intergenic 40.0%
AGAGAAGGGAGAGAAGATTT+GGG + chr4.4:29417049-29417068 None:intergenic 40.0%
AGAGATTGCTGCATGACAAT+GGG + chr4.4:29417219-29417238 None:intergenic 40.0%
AGCAATTATGTTGGCCATGA+AGG + chr4.4:29417908-29417927 None:intergenic 40.0%
AGCTCTCCAATCGTGAAAAT+TGG - chr4.4:29419380-29419399 MS.gene56451:intron 40.0%
AGGAGAAGGGGAAAATTTCA+GGG + chr4.4:29417166-29417185 None:intergenic 40.0%
ATATGGATGGCTGACAAAGA+TGG + chr4.4:29417960-29417979 None:intergenic 40.0%
ATGCGAAGAAAACCGATAGA+CGG - chr4.4:29415658-29415677 MS.gene56451:intron 40.0%
ATGGCTGACAAAGATGGAAA+GGG + chr4.4:29417954-29417973 None:intergenic 40.0%
ATTATGTTGGCCATGAAGGT+TGG + chr4.4:29417904-29417923 None:intergenic 40.0%
ATTCAGAGCAGCACTAATAG+AGG + chr4.4:29417816-29417835 None:intergenic 40.0%
ATTCCACGTGATATTGATGG+AGG + chr4.4:29417266-29417285 None:intergenic 40.0%
ATTCCTCCATCAATATCACG+TGG - chr4.4:29417260-29417279 MS.gene56451:intron 40.0%
ATTCTTACTGCTTCGTCAGT+GGG + chr4.4:29419867-29419886 None:intergenic 40.0%
ATTGGAGAGCTCTTTACAGA+GGG + chr4.4:29419371-29419390 None:intergenic 40.0%
CACCACAAAAACAAGCACAA+AGG - chr4.4:29417878-29417897 MS.gene56451:intron 40.0%
CAGTTGTTCCTTTCAGGATT+TGG - chr4.4:29416973-29416992 MS.gene56451:intron 40.0%
CTAGGAAATGAAGTGTGAAC+AGG - chr4.4:29416721-29416740 MS.gene56451:intron 40.0%
CTCTGGACCAGTATTTATCA+TGG + chr4.4:29416905-29416924 None:intergenic 40.0%
CTTATCAGACTTACTGTCAC+TGG + chr4.4:29415703-29415722 None:intergenic 40.0%
CTTGGCTTCCACACTTAATT+TGG - chr4.4:29416568-29416587 MS.gene56451:intron 40.0%
GAAAAACAGTTGCTCATCCA+CGG + chr4.4:29418507-29418526 None:intergenic 40.0%
GAAACAAGTGATTCTTGTGG+AGG + chr4.4:29417746-29417765 None:intergenic 40.0%
GAATATTCGAGGGAAGGATA+AGG + chr4.4:29417244-29417263 None:intergenic 40.0%
GAATCCCTGTGAATTACTCT+TGG + chr4.4:29417773-29417792 None:intergenic 40.0%
GAGATTGAATATTTCCGGTG+AGG - chr4.4:29415392-29415411 MS.gene56451:CDS 40.0%
GATGAGGGATAACTGATGTA+CGG - chr4.4:29417428-29417447 MS.gene56451:intron 40.0%
GCTAGGATTCATTAGCAGAT+TGG - chr4.4:29418616-29418635 MS.gene56451:intron 40.0%
GGTAGTAGTATACAAAGAGG+GGG - chr4.4:29416427-29416446 MS.gene56451:intron 40.0%
GGTTAGAATTCCATCAGGTT+TGG + chr4.4:29417087-29417106 None:intergenic 40.0%
GTAACGAAACTTGTAAGGGA+AGG + chr4.4:29418072-29418091 None:intergenic 40.0%
GTAGTAGTATACAAAGAGGG+GGG - chr4.4:29416428-29416447 MS.gene56451:intron 40.0%
GTATCACTTCATGATGCTGA+CGG - chr4.4:29418822-29418841 MS.gene56451:intron 40.0%
GTCGTGATGTTTCCTATAAG+TGG + chr4.4:29418134-29418153 None:intergenic 40.0%
GTTTCTAAGTAGCAGTACTC+TGG + chr4.4:29415760-29415779 None:intergenic 40.0%
GTTTGTGTCTGTACCTCAAA+GGG - chr4.4:29417701-29417720 MS.gene56451:intron 40.0%
TAAAGAATCCACACTCACAC+CGG + chr4.4:29417385-29417404 None:intergenic 40.0%
TAGTAGTATACAAAGAGGGG+GGG - chr4.4:29416429-29416448 MS.gene56451:intron 40.0%
TCACCAAGTCAAACATCAGA+AGG + chr4.4:29416037-29416056 None:intergenic 40.0%
TCAGAAACACAGTGAAGGAA+TGG + chr4.4:29416245-29416264 None:intergenic 40.0%
TCCATTCTTCTCTTGTTCAG+AGG - chr4.4:29418016-29418035 MS.gene56451:intron 40.0%
TCCTCTGAACAAGAGAAGAA+TGG + chr4.4:29418020-29418039 None:intergenic 40.0%
TCTGAATTCTGCCCATATGA+GGG - chr4.4:29417829-29417848 MS.gene56451:intron 40.0%
TGAAACTGTTAGAGAAGCTG+TGG - chr4.4:29416364-29416383 MS.gene56451:intron 40.0%
TGCCTGTATACTGGAACTTT+AGG - chr4.4:29419547-29419566 MS.gene56451:intron 40.0%
TTCAGAGTGCAGTCAAGTTT+GGG - chr4.4:29418710-29418729 MS.gene56451:intron 40.0%
TTGGAAATCAGCAATGCCAT+TGG - chr4.4:29418407-29418426 MS.gene56451:intron 40.0%
TTGTTCAGAGGAGATTCAGA+CGG - chr4.4:29418028-29418047 MS.gene56451:intron 40.0%
! ACATTTGCAAGAGGCTTTGT+TGG - chr4.4:29417557-29417576 MS.gene56451:intron 40.0%
! ACCTTGATGGTCGATACTTT+GGG - chr4.4:29419934-29419953 MS.gene56451:CDS 40.0%
! GAATGTATTGACAGCAACTG+AGG + chr4.4:29417458-29417477 None:intergenic 40.0%
! GAGTTGGTTAGAATTCCATC+AGG + chr4.4:29417092-29417111 None:intergenic 40.0%
! GGTTTAGGTTTCCACTAATG+GGG + chr4.4:29417498-29417517 None:intergenic 40.0%
! GTTACACCCAGCAAAGTATT+TGG + chr4.4:29417630-29417649 None:intergenic 40.0%
! TGAAGTTAGCTTGAGGAGAA+GGG + chr4.4:29417179-29417198 None:intergenic 40.0%
! TTAGGTTTTTGTCAGGGAGA+GGG + chr4.4:29419327-29419346 None:intergenic 40.0%
!! ATCGGTTTTCTTCGCATCAA+CGG + chr4.4:29415655-29415674 None:intergenic 40.0%
!! ATGTTTGACTTGGTGATCAC+CGG - chr4.4:29416041-29416060 MS.gene56451:intron 40.0%
!! CATTTGCAAGAGGCTTTGTT+GGG - chr4.4:29417558-29417577 MS.gene56451:intron 40.0%
!! TTTAGGTTTTTGTCAGGGAG+AGG + chr4.4:29419328-29419347 None:intergenic 40.0%
!!! CTTTGTGCTTGTTTTTGTGG+TGG + chr4.4:29417880-29417899 None:intergenic 40.0%
!!! GTTGCTTTGTTTTGAAGGTG+GGG - chr4.4:29419736-29419755 MS.gene56451:CDS 40.0%
!!! GTTGGTCAGTTTGTTTTTGG+TGG - chr4.4:29416472-29416491 MS.gene56451:intron 40.0%
!!! GTTTTTTGATATGCTGTCCC+TGG - chr4.4:29418639-29418658 MS.gene56451:intron 40.0%
AAGAGAAGAATGGACAGCAG+AGG + chr4.4:29418010-29418029 None:intergenic 45.0%
AATCAGCAATGCCATTGGTC+TGG - chr4.4:29418412-29418431 MS.gene56451:intron 45.0%
AATGAGTTAGCTCCAATGCC+AGG - chr4.4:29420005-29420024 MS.gene56451:CDS 45.0%
ACTAAATCCATCCACACTCC+CGG + chr4.4:29415500-29415519 None:intergenic 45.0%
ACTCATGTTCCTCTTGGATG+AGG - chr4.4:29417412-29417431 MS.gene56451:intron 45.0%
AGAAGAAAGGAGGTCCAAGT+GGG - chr4.4:29416305-29416324 MS.gene56451:intron 45.0%
AGAAGGGGAAAATTTCAGGG+TGG + chr4.4:29417163-29417182 None:intergenic 45.0%
AGAATTCCATCAGGTTTGGC+AGG + chr4.4:29417083-29417102 None:intergenic 45.0%
AGAGATAGGGAGAGAGATCA+GGG - chr4.4:29415363-29415382 MS.gene56451:CDS 45.0%
AGAGGGAGAGAGAAGAGAAA+GGG - chr4.4:29415332-29415351 MS.gene56451:CDS 45.0%
AGATGATGAGCTGGAAGATG+AGG - chr4.4:29419770-29419789 MS.gene56451:CDS 45.0%
AGGATAGGCCACAAAGAGAA+GGG + chr4.4:29417063-29417082 None:intergenic 45.0%
ATATTTCCGGTGAGGAAGCA+TGG - chr4.4:29415400-29415419 MS.gene56451:CDS 45.0%
ATCCAAGAGGAACATGAGTC+TGG + chr4.4:29417411-29417430 None:intergenic 45.0%
ATGGAGGAATATTCGAGGGA+AGG + chr4.4:29417250-29417269 None:intergenic 45.0%
ATTCTCAGGGGAGATGCATA+TGG + chr4.4:29417977-29417996 None:intergenic 45.0%
CAAAGATGGGGTGGAAACAA+GGG - chr4.4:29415593-29415612 MS.gene56451:intron 45.0%
CAAGCCCAAGAGTAATTCAC+AGG - chr4.4:29417765-29417784 MS.gene56451:intron 45.0%
CTAAGTAGCAGTACTCTGGT+AGG + chr4.4:29415756-29415775 None:intergenic 45.0%
CTAGTCAGCATGGATAGAGT+TGG + chr4.4:29417108-29417127 None:intergenic 45.0%
CTCATGTTCCTCTTGGATGA+GGG - chr4.4:29417413-29417432 MS.gene56451:intron 45.0%
CTCTGAATTCTGCCCATATG+AGG - chr4.4:29417828-29417847 MS.gene56451:intron 45.0%
CTTCAGAGTGCAGTCAAGTT+TGG - chr4.4:29418709-29418728 MS.gene56451:intron 45.0%
CTTCTCCTCAAGCTAACTTC+AGG - chr4.4:29417178-29417197 MS.gene56451:intron 45.0%
CTTGTCCTCGTCGTAAAATG+TGG + chr4.4:29419976-29419995 None:intergenic 45.0%
GAGAAGGGAGAGAAGATTTG+GGG + chr4.4:29417048-29417067 None:intergenic 45.0%
GAGAGATTGCTGCATGACAA+TGG + chr4.4:29417220-29417239 None:intergenic 45.0%
GAGGAGAAGGGGAAAATTTC+AGG + chr4.4:29417167-29417186 None:intergenic 45.0%
GATGGCTGACAAAGATGGAA+AGG + chr4.4:29417955-29417974 None:intergenic 45.0%
GATTCTTACTGCTTCGTCAG+TGG + chr4.4:29419868-29419887 None:intergenic 45.0%
GATTGGAGAGCTCTTTACAG+AGG + chr4.4:29419372-29419391 None:intergenic 45.0%
GCTTCGTCAGTGGGAAAATT+TGG + chr4.4:29419858-29419877 None:intergenic 45.0%
GGATCAGAATGTGCCAAGTA+TGG - chr4.4:29419795-29419814 MS.gene56451:CDS 45.0%
GGTTTGTGTCTGTACCTCAA+AGG - chr4.4:29417700-29417719 MS.gene56451:intron 45.0%
GTAGTTGTAAATCGGGAGCT+AGG - chr4.4:29418599-29418618 MS.gene56451:intron 45.0%
TAGAAGAAAGGAGGTCCAAG+TGG - chr4.4:29416304-29416323 MS.gene56451:intron 45.0%
TAGAGATAGGGAGAGAGATC+AGG - chr4.4:29415362-29415381 MS.gene56451:CDS 45.0%
TCAGTTATCCCTCATCCAAG+AGG + chr4.4:29417424-29417443 None:intergenic 45.0%
TCCAAGAGGAACATGAGTCT+GGG + chr4.4:29417410-29417429 None:intergenic 45.0%
TCGGGTTACTGTTCCATACT+TGG + chr4.4:29419811-29419830 None:intergenic 45.0%
TCTTAGAAAGAGGATGGGGA+AGG - chr4.4:29419253-29419272 MS.gene56451:intron 45.0%
TCTTCTCTCCCTTCTCTTTG+TGG - chr4.4:29417052-29417071 MS.gene56451:intron 45.0%
TGAAAGGAAACTCAACTCCC+AGG + chr4.4:29418901-29418920 None:intergenic 45.0%
TGCGAAGAAAACCGATAGAC+GGG - chr4.4:29415659-29415678 MS.gene56451:intron 45.0%
TGCTACATACACCAGACCAA+TGG + chr4.4:29418426-29418445 None:intergenic 45.0%
TGGCCTTCTGATGTTTGACT+TGG - chr4.4:29416031-29416050 MS.gene56451:intron 45.0%
TTCACAGGGATTCTGCATCA+TGG - chr4.4:29417780-29417799 MS.gene56451:intron 45.0%
TTGGTCTGGTGTATGTAGCA+TGG - chr4.4:29418426-29418445 MS.gene56451:intron 45.0%
TTTGTCAGGTACCCCATTAG+TGG - chr4.4:29417484-29417503 MS.gene56451:intron 45.0%
! AAAGCGCTTGTTGACCTTGA+TGG - chr4.4:29419921-29419940 MS.gene56451:CDS 45.0%
! ACTAATGGGGTACCTGACAA+AGG + chr4.4:29417485-29417504 None:intergenic 45.0%
! ACTCTCCTGAAGTTAGCTTG+AGG + chr4.4:29417186-29417205 None:intergenic 45.0%
! AGAGGATGATGGCAAAGATG+GGG - chr4.4:29415581-29415600 MS.gene56451:intron 45.0%
! CAGAGGATGATGGCAAAGAT+GGG - chr4.4:29415580-29415599 MS.gene56451:intron 45.0%
! CCTTGATGGTCGATACTTTG+GGG - chr4.4:29419935-29419954 MS.gene56451:CDS 45.0%
! CTCACACCGGCTAGTTATTA+TGG + chr4.4:29417372-29417391 None:intergenic 45.0%
! CTGAAGTTAGCTTGAGGAGA+AGG + chr4.4:29417180-29417199 None:intergenic 45.0%
! CTTGATGGTCGATACTTTGG+GGG - chr4.4:29419936-29419955 MS.gene56451:CDS 45.0%
! GAAGTTAGCTTGAGGAGAAG+GGG + chr4.4:29417178-29417197 None:intergenic 45.0%
! GACCTTGATGGTCGATACTT+TGG - chr4.4:29419933-29419952 MS.gene56451:CDS 45.0%
! GGAGGAGTAAAAGAGTATGC+TGG + chr4.4:29417728-29417747 None:intergenic 45.0%
! TAGGTTTTTGTCAGGGAGAG+GGG + chr4.4:29419326-29419345 None:intergenic 45.0%
! TAGTATTGGGAAGTCGGAGA+CGG - chr4.4:29415516-29415535 MS.gene56451:CDS 45.0%
! TCAGAGGATGATGGCAAAGA+TGG - chr4.4:29415579-29415598 MS.gene56451:intron 45.0%
! TGGAAGCCAAGTTGAGCAAT+GGG + chr4.4:29416559-29416578 None:intergenic 45.0%
!! TTTCAGGGTGGAGTATTGTC+AGG + chr4.4:29417151-29417170 None:intergenic 45.0%
!!! GGCCTTTGTGCTTGTTTTTG+TGG + chr4.4:29417883-29417902 None:intergenic 45.0%
AAACAGTTGCTCATCCACGG+AGG + chr4.4:29418504-29418523 None:intergenic 50.0%
AACAGTTGCTCATCCACGGA+GGG + chr4.4:29418503-29418522 None:intergenic 50.0%
AAGAAAACCGATAGACGGGC+TGG - chr4.4:29415663-29415682 MS.gene56451:intron 50.0%
AATAACCCCAGCCCGTCTAT+CGG + chr4.4:29415673-29415692 None:intergenic 50.0%
ACAGCTCCCATTGCTCAACT+TGG - chr4.4:29416550-29416569 MS.gene56451:intron 50.0%
ACAGGGATTCTGCATCATGG+AGG - chr4.4:29417783-29417802 MS.gene56451:intron 50.0%
ACTGTTAGAGAAGCTGTGGC+CGG - chr4.4:29416368-29416387 MS.gene56451:intron 50.0%
AGAATGGACAGCAGAGGCAA+AGG + chr4.4:29418004-29418023 None:intergenic 50.0%
AGAGGGGGGGAATGTAATTG+AGG - chr4.4:29416442-29416461 MS.gene56451:intron 50.0%
AGAGTATGCTGGTCCCTTTG+AGG + chr4.4:29417717-29417736 None:intergenic 50.0%
AGCACAAAGGCCAACCTTCA+TGG - chr4.4:29417891-29417910 MS.gene56451:intron 50.0%
AGCTCATCATCTACCTCACC+AGG + chr4.4:29419762-29419781 None:intergenic 50.0%
AGGCAAAGGCCTCATTCTCA+GGG + chr4.4:29417990-29418009 None:intergenic 50.0%
ATAACTAGCCGGTGTGAGTG+TGG - chr4.4:29417374-29417393 MS.gene56451:intron 50.0%
ATGCATCTCCCCTGAGAATG+AGG - chr4.4:29417978-29417997 MS.gene56451:intron 50.0%
CAGGATAGGCCACAAAGAGA+AGG + chr4.4:29417064-29417083 None:intergenic 50.0%
CAGGGTCTCCAAATCCTGAA+AGG + chr4.4:29416984-29417003 None:intergenic 50.0%
CCAATGCCAGGAGAAATTCC+TGG - chr4.4:29420017-29420036 MS.gene56451:CDS 50.0%
CCAGGAATTTCTCCTGGCAT+TGG + chr4.4:29420020-29420039 None:intergenic 50.0%
CTAAATCCATCCACACTCCC+GGG + chr4.4:29415499-29415518 None:intergenic 50.0%
GACTAGCAAACCAGCTCGTT+GGG - chr4.4:29417122-29417141 MS.gene56451:intron 50.0%
GAGAGGGAGAGAGAAGAGAA+AGG - chr4.4:29415331-29415350 MS.gene56451:CDS 50.0%
GAGGGGGGGAATGTAATTGA+GGG - chr4.4:29416443-29416462 MS.gene56451:intron 50.0%
GATGAGCTGGAAGATGAGGT+AGG - chr4.4:29419774-29419793 MS.gene56451:CDS 50.0%
GCAAAGATGGGGTGGAAACA+AGG - chr4.4:29415592-29415611 MS.gene56451:intron 50.0%
GCTGCATGACAATGGGATGA+AGG + chr4.4:29417212-29417231 None:intergenic 50.0%
GTGAAGCCAGGAATTTCTCC+TGG + chr4.4:29420026-29420045 None:intergenic 50.0%
TCAGGGGAGATGCATATGGA+TGG + chr4.4:29417973-29417992 None:intergenic 50.0%
TCCATCAGGTTTGGCAGGAT+AGG + chr4.4:29417078-29417097 None:intergenic 50.0%
TCCCAGACTCATGTTCCTCT+TGG - chr4.4:29417406-29417425 MS.gene56451:intron 50.0%
TGACTAGCAAACCAGCTCGT+TGG - chr4.4:29417121-29417140 MS.gene56451:intron 50.0%
TGCTGTCCCTGGATAGATTG+TGG - chr4.4:29418650-29418669 MS.gene56451:intron 50.0%
TGGTGAGGTAGATGATGAGC+TGG - chr4.4:29419761-29419780 MS.gene56451:CDS 50.0%
! AGAAAACCGATAGACGGGCT+GGG - chr4.4:29415664-29415683 MS.gene56451:intron 50.0%
! AGGTTTTTGTCAGGGAGAGG+GGG + chr4.4:29419325-29419344 None:intergenic 50.0%
! ATTTTCATTGAGAGCGGGCC+TGG - chr4.4:29418880-29418899 MS.gene56451:intron 50.0%
! GTGGAAGCCAAGTTGAGCAA+TGG + chr4.4:29416560-29416579 None:intergenic 50.0%
! TGCTTGTTAACGACGCTGAG+AGG - chr4.4:29415831-29415850 MS.gene56451:intron 50.0%
! TGGGGTACCTGACAAAGGTA+AGG + chr4.4:29417480-29417499 None:intergenic 50.0%
! TTTTCATTGAGAGCGGGCCT+GGG - chr4.4:29418881-29418900 MS.gene56451:intron 50.0%
!! AAACTGTTTAGGCACTGGGG+TGG - chr4.4:29419090-29419109 MS.gene56451:intron 50.0%
!! AGCTGGTTTGCTAGTCAGCA+TGG + chr4.4:29417118-29417137 None:intergenic 50.0%
!! CCCCAAAGTATCGACCATCA+AGG + chr4.4:29419938-29419957 None:intergenic 50.0%
!!! TTTGTTTTGAAGGTGGGGCC+TGG - chr4.4:29419741-29419760 MS.gene56451:CDS 50.0%
AAGTCGGAGACGGTTGGGTT+GGG - chr4.4:29415526-29415545 MS.gene56451:CDS 55.0%
AGAGGGAGAAGAGAGGGAGA+GGG - chr4.4:29415315-29415334 MS.gene56451:CDS 55.0%
AGGAGGAGAGGGAGAAGAGA+GGG - chr4.4:29415309-29415328 MS.gene56451:CDS 55.0%
ATGGGGTGGAAACAAGGGCA+AGG - chr4.4:29415598-29415617 MS.gene56451:intron 55.0%
ATTGGGAAGTCGGAGACGGT+TGG - chr4.4:29415520-29415539 MS.gene56451:CDS 55.0%
CCTTCTCCATGCTTCCTCAC+CGG + chr4.4:29415409-29415428 None:intergenic 55.0%
GACTGCTGCTCAGAGGATGA+TGG - chr4.4:29415570-29415589 MS.gene56451:CDS 55.0%
GAGGCAAAGGCCTCATTCTC+AGG + chr4.4:29417991-29418010 None:intergenic 55.0%
GCCTATCCTGCCAAACCTGA+TGG - chr4.4:29417074-29417093 MS.gene56451:intron 55.0%
GGAAACAAGGGCAAGGGCTT+GGG - chr4.4:29415605-29415624 MS.gene56451:intron 55.0%
GGAAGGCTAACGAACACGTC+CGG + chr4.4:29416390-29416409 None:intergenic 55.0%
GGCAAAGGCCTCATTCTCAG+GGG + chr4.4:29417989-29418008 None:intergenic 55.0%
GGCTTGGGAAACAGGAGCAA+GGG - chr4.4:29415620-29415639 MS.gene56451:intron 55.0%
GGGATTCTGCATCATGGAGG+AGG - chr4.4:29417786-29417805 MS.gene56451:intron 55.0%
TGGAAACAAGGGCAAGGGCT+TGG - chr4.4:29415604-29415623 MS.gene56451:intron 55.0%
TGGGGTGGAAACAAGGGCAA+GGG - chr4.4:29415599-29415618 MS.gene56451:intron 55.0%
TTGGGAAGTCGGAGACGGTT+GGG - chr4.4:29415521-29415540 MS.gene56451:CDS 55.0%
! AAGCATGGAGAAGGCGTGTG+GGG - chr4.4:29415415-29415434 MS.gene56451:CDS 55.0%
! GAAGCATGGAGAAGGCGTGT+GGG - chr4.4:29415414-29415433 MS.gene56451:CDS 55.0%
! GCGTGCCACATTTTACGACG+AGG - chr4.4:29419968-29419987 MS.gene56451:CDS 55.0%
! GGATGATGGCAAAGATGGGG+TGG - chr4.4:29415584-29415603 MS.gene56451:intron 55.0%
! TTTTTGTCAGGGAGAGGGGG+TGG + chr4.4:29419322-29419341 None:intergenic 55.0%
!! GAAAACCGATAGACGGGCTG+GGG - chr4.4:29415665-29415684 MS.gene56451:intron 55.0%
!! GATCACTTTTCCTCCCTCCG+TGG - chr4.4:29418487-29418506 MS.gene56451:intron 55.0%
AATCCATCCACACTCCCGGG+AGG + chr4.4:29415496-29415515 None:intergenic 60.0%
AGGGCAAGGGCTTGGGAAAC+AGG - chr4.4:29415612-29415631 MS.gene56451:intron 60.0%
AGTTGCTCATCCACGGAGGG+AGG + chr4.4:29418500-29418519 None:intergenic 60.0%
CTAACAGAGGCCAGCCCACT+TGG + chr4.4:29416322-29416341 None:intergenic 60.0%
GAAAGGAGGTCCAAGTGGGC+TGG - chr4.4:29416309-29416328 MS.gene56451:intron 60.0%
GAAGTCGGAGACGGTTGGGT+TGG - chr4.4:29415525-29415544 MS.gene56451:CDS 60.0%
GAGAGGGAGAAGAGAGGGAG+AGG - chr4.4:29415314-29415333 MS.gene56451:CDS 60.0%
GAGGAGGAGAGGGAGAAGAG+AGG - chr4.4:29415308-29415327 MS.gene56451:CDS 60.0%
GGCAGATGACTGCTGCTCAG+AGG - chr4.4:29415563-29415582 MS.gene56451:CDS 60.0%
GGGCTTGGGAAACAGGAGCA+AGG - chr4.4:29415619-29415638 MS.gene56451:intron 60.0%
TGTCAGGACACCCAACGAGC+TGG + chr4.4:29417135-29417154 None:intergenic 60.0%
TTTGAAGGTGGGGCCTGGTG+AGG - chr4.4:29419746-29419765 MS.gene56451:CDS 60.0%
! AGCATGGAGAAGGCGTGTGG+GGG - chr4.4:29415416-29415435 MS.gene56451:CDS 60.0%
! CCGGTGAGGAAGCATGGAGA+AGG - chr4.4:29415406-29415425 MS.gene56451:CDS 60.0%
! GGAAGCATGGAGAAGGCGTG+TGG - chr4.4:29415413-29415432 MS.gene56451:CDS 60.0%
!! GAGACGGTTGGGTTGGGAGT+TGG - chr4.4:29415532-29415551 MS.gene56451:CDS 60.0%
!! GGTTGGGAGTTGGTGCTGGT+GGG - chr4.4:29415542-29415561 MS.gene56451:CDS 60.0%
!! GTTGGGTTGGGAGTTGGTGC+TGG - chr4.4:29415538-29415557 MS.gene56451:CDS 60.0%
GGGATGAGTGGAGGAGGTGG+TGG - chr4.4:29415436-29415455 MS.gene56451:CDS 65.0%
GTGTGGGGGATGAGTGGAGG+AGG - chr4.4:29415430-29415449 MS.gene56451:CDS 65.0%
TGGGGGATGAGTGGAGGAGG+TGG - chr4.4:29415433-29415452 MS.gene56451:CDS 65.0%
TTGTCAGGGAGAGGGGGTGG+AGG + chr4.4:29419319-29419338 None:intergenic 65.0%
! AGTGGAGGAGGTGGTGGCAG+TGG - chr4.4:29415442-29415461 MS.gene56451:CDS 65.0%
! GAAGGCGTGTGGGGGATGAG+TGG - chr4.4:29415424-29415443 MS.gene56451:CDS 65.0%
! GAGGTGGTGGCAGTGGTGGA+CGG - chr4.4:29415449-29415468 MS.gene56451:CDS 65.0%
!! AGGTGGTGGCAGTGGTGGAC+GGG - chr4.4:29415450-29415469 MS.gene56451:CDS 65.0%
!! GGGTTGGGAGTTGGTGCTGG+TGG - chr4.4:29415541-29415560 MS.gene56451:CDS 65.0%
GGCGTGTGGGGGATGAGTGG+AGG - chr4.4:29415427-29415446 MS.gene56451:CDS 70.0%
TCCACACTCCCGGGAGGCGA+TGG + chr4.4:29415490-29415509 None:intergenic 70.0%
! GGAGGAGGTGGTGGCAGTGG+TGG - chr4.4:29415445-29415464 MS.gene56451:CDS 70.0%
! TCGCCTCCCGGGAGTGTGGA+TGG - chr4.4:29415490-29415509 MS.gene56451:CDS 70.0%
!! GGTGGTGGCAGTGGTGGACG+GGG - chr4.4:29415451-29415470 MS.gene56451:CDS 70.0%
CCGAGGTCGCCATCGCCTCC+CGG - chr4.4:29415478-29415497 MS.gene56451:CDS 75.0%
CCGGGAGGCGATGGCGACCT+CGG + chr4.4:29415481-29415500 None:intergenic 75.0%
CGAGGTCGCCATCGCCTCCC+GGG - chr4.4:29415479-29415498 MS.gene56451:CDS 75.0%
GCCATCGCCTCCCGGGAGTG+TGG - chr4.4:29415486-29415505 MS.gene56451:CDS 75.0%
!! GTGGTGGACGGGGTGTGCCG+AGG - chr4.4:29415461-29415480 MS.gene56451:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 29415301 29420049 29415301 ID=MS.gene56451
chr4.4 mRNA 29415301 29420049 29415301 ID=MS.gene56451.t1;Parent=MS.gene56451
chr4.4 exon 29419899 29420049 29419899 ID=MS.gene56451.t1.exon1;Parent=MS.gene56451.t1
chr4.4 CDS 29419899 29420049 29419899 ID=cds.MS.gene56451.t1;Parent=MS.gene56451.t1
chr4.4 exon 29419715 29419867 29419715 ID=MS.gene56451.t1.exon2;Parent=MS.gene56451.t1
chr4.4 CDS 29419715 29419867 29419715 ID=cds.MS.gene56451.t1;Parent=MS.gene56451.t1
chr4.4 exon 29419568 29419673 29419568 ID=MS.gene56451.t1.exon3;Parent=MS.gene56451.t1
chr4.4 CDS 29419568 29419673 29419568 ID=cds.MS.gene56451.t1;Parent=MS.gene56451.t1
chr4.4 exon 29415301 29415597 29415301 ID=MS.gene56451.t1.exon4;Parent=MS.gene56451.t1
chr4.4 CDS 29415301 29415597 29415301 ID=cds.MS.gene56451.t1;Parent=MS.gene56451.t1
Gene Sequence

>MS.gene56451

GGAGGAGGAGGAGGAGAGGGAGAAGAGAGGGAGAGGGAGAGAGAAGAGAAAGGGAGAGAGATAGAGATAGGGAGAGAGATCAGGGAGATTCGAGATTGAATATTTCCGGTGAGGAAGCATGGAGAAGGCGTGTGGGGGATGAGTGGAGGAGGTGGTGGCAGTGGTGGACGGGGTGTGCCGAGGTCGCCATCGCCTCCCGGGAGTGTGGATGGATTTAGTATTGGGAAGTCGGAGACGGTTGGGTTGGGAGTTGGTGCTGGTGGGCAGATGACTGCTGCTCAGAGGATGATGGCAAAGATGGGGTGGAAACAAGGGCAAGGGCTTGGGAAACAGGAGCAAGGGATTACAACTCCGTTGATGCGAAGAAAACCGATAGACGGGCTGGGGTTATTGTTAATGCCAGTGACAGTAAGTCTGATAAGAAAGTTAAGAGTGTTAACATCAATGGTGTACCTACCAGAGTACTGCTACTTAGAAACATGGTATGCACATTTTTAATGTTAAATGCTTGTTTGGTTTCGGTGTTTATGTGCTTGTTAACGACGCTGAGAGGTTTCATGAACTTTATGACTCACATGATCATGTTTTATATTTCAGCTGCATTGTTTTGATGGGTGTTTTTAAGAATAGTACAGATTTTGTTGTTTGTTATGCAATATATTTTTGTTCTGTGTGCTGTTTAGTTTTAATTTGAAAATAGCACAGGCTAATGAATATTTGGCATATGATGTGGCCTTCTGATGTTTGACTTGGTGATCACCGGATGTAGTCATATCGATTATATATATATATTTGTCTTCTAACTTAATAAGCTAGCATCAACTTATATCATTAGCATATTAAAATGAACACATCACACTTTTTACTAGGATTTCTTTTTGCTAACCATTCTGTTTTATGAGTTAGAAATTGTGTCTTAGTAGTAGTTAGTGAATAATTGACCATTCCTTCACTGTGTTTCTGAATATACATATTAAATATCTGTTAACATTATATATTAGATTAGAAGAAAGGAGGTCCAAGTGGGCTGGCCTCTGTTAGTTAGACATTGTTTGTTAAAATTTGAAACTGTTAGAGAAGCTGTGGCCGGACGTGTTCGTTAGCCTTCCCTAACACAATAGTAATAGGTAGTAGTATACAAAGAGGGGGGGAATGTAATTGAGGGATGTTAGTTGGTCAGTTTGTTTTTGGTGGCAGAGACTAAGCTCTTGATCTTGATAAACGTTCTTAATCACACAGGGTTTAAGTCACAGCTCCCATTGCTCAACTTGGCTTCCACACTTAATTTGGAAGCTGTTGTTTGCTTTTAGTGTCTACGATATCAGATTTTCCAGAAAGAACACAGTAATCTCATGTGGAATATCTTTCTGGAGAAATTAGCGTGACTGTTATAAGATCAGTGATGTTGTATGAACAAATGCTAGGAAATGAAGTGTGAACAGGAGTAGAAAATAATTGTTGTAAATATGAGAATAGATAAAAAGACATAGAAGACAAGATATGATTAAGAATGAAAATATCTGAAAGACAAGATATGATTAAGAATGAAAATATCTGAAAGAAAGTTGTAGTAACAAATGTCAAGGATATAAGTAAATGTCCCATGATAAATACTGGTCCAGAGAATATAGAAACGTTGAAAGAAAAGGTTGGAGAAAAAAATGAGTACATTCAGTTGTTCCTTTCAGGATTTGGAGACCCTGAAATCTTCCTTCTAAAAACCAATCTCCAACAAAACATAAAACCCCAAATCTTCTCTCCCTTCTCTTTGTGGCCTATCCTGCCAAACCTGATGGAATTCTAACCAACTCTATCCATGCTGACTAGCAAACCAGCTCGTTGGGTGTCCTGACAATACTCCACCCTGAAATTTTCCCCTTCTCCTCAAGCTAACTTCAGGAGAGTACTCCTTCATCCCATTGTCATGCAGCAATCTCTCACCTTATCCTTCCCTCGAATATTCCTCCATCAATATCACGTGGAATTTTTTCATTCTTGCAAACACAGGCTTACAAGTACAAAGAATTCACACTAGCAATCTCTCACCTGAATCTCCATTGAATTCTTTCCATAATAACTAGCCGGTGTGAGTGTGGATTCTTTATTCCCAGACTCATGTTCCTCTTGGATGAGGGATAACTGATGTACGGAATTCCTCAGTTGCTGTCAATACATTCCTTACCTTTGTCAGGTACCCCATTAGTGGAAACCTAAACCTATAAATCTCCAACCAATTTTTAAAGGGCCTTACTCGTTACATTTGCAAGAGGCTTTGTTGGGTACCTTGTTCTTCTCACAAATATCTGGACATAGTCCGTAATTTCTACCAAATACTTTGCTGGGTGTAACTTCAACTCTACTCTAATATCATCTTTTAGACCTTTCAAGAAAATTTTGGTGGTTTGTGTCTGTACCTCAAAGGGACCAGCATACTCTTTTACTCCTCCACAAGAATCACTTGTTTCAAGCCCAAGAGTAATTCACAGGGATTCTGCATCATGGAGGAGGTAAACCTCTATTAGTGCTGCTCTGAATTCTGCCCATATGAGGGATTCTGATTTCTGAGAAAATAAATCCCACCACAAAAACAAGCACAAAGGCCAACCTTCATGGCCAACATAATTGCTTTGTAACATTTCATTGTCAGCTACCCTTTCCATCTTTGTCAGCCATCCATATGCATCTCCCCTGAGAATGAGGCCTTTGCCTCTGCTGTCCATTCTTCTCTTGTTCAGAGGAGATTCAGACGGTGCATATTGATTTTTTTTCCTTCCCTTACAAGTTTCGTTACATGATTGAGGATGTCATCTCAATAAATTTAAAGAATTGGCCACTTATAGGAAACATCACGACTATTGACATGGTCAGAAATTATAAAATTCGTATTTATATACTATATACACAGACACATAATTTTATGGTTTAGTTTAGAAGGAAGGGTGTGCTTGCAAGTAATACCATTTTCATAACAAACAAGCATGCATCTATGGTACATGTTCCATTATTTTTATTGGCATTGAAATTGGCAGTGATACAGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTGTCTTTTCAAGTGTTGGAAATCAGCAATGCCATTGGTCTGGTGTATGTAGCATGGTTAATTTTCTGATTATATGACTTGGATGTATCTTGGTTGATCACTTTTCCTCCCTCCGTGGATGAGCAACTGTTTTTCAATGTCCTGTTCTTAGAATGGTATGATGTTAATACAGTATGAGGGGATGATGTTTATAATTATTAATATGGTGTAGTTGTAAATCGGGAGCTAGGATTCATTAGCAGATTGGGTTTTTTGATATGCTGTCCCTGGATAGATTGTGGCTTTATTTCTTACTATGGAATTTTGGATTAGGATTACTTCAGAGTGCAGTCAAGTTTGGGTAATGCCTTTTAAGAATTACAGTTCTTTGAGTTGAATATCCATGGTATATTTTCTTTCTTGGGGGTGCTTGCTCTTTTCAAACTGATTTGTATCACTTCATGATGCTGACGGAGTCTATATTGTACTTACCAAAGCCAAATGAGCTTATTTTCATTGAGAGCGGGCCTGGGAGTTGAGTTTCCTTTCATAATATTTTGAAGGAGTTGAAATTTTTTCAGTTTCTTTTTTGTAGTTCCGAAATTCTTTTTCATTCTTTCGGTAATTTATGGGGATAAGTTCCTTTTGACTTTGTGCCTGCATTGTAATTATTGGTTGATAAATATTTGCTGAAACGCTTAATACCTTGCGTCTGTTTTAAACTGTTTAGGCACTGGGGTGGAACATAGATGCGTACACTGTTTTTTTCCTCATTTGCATATTATTAATGCTGAGGTTGATCACAATTTCCAAAGCAATAGATCAGATTTAATTGTTTATCTGAAGTTGCCTTTGTTTGACATTGATCAACTGAAGAAATTTTCTTAGAAAGAGGATGGGGAAGGAGCAGTCTTTCCTAAGAAAGAAAGAAAGAAATAATACAATCCTCCACCCCCTCTCCCTGACAAAAACCTAAAACAGAAGTCTTGTGACACAGCCCTCTGTAAAGAGCTCTCCAATCGTGAAAATTGGAATGTTCAATGATACGTTGATCTTTCTTTCTCTTCTAGTCAATTTTGACTTCTTGGTTTTTGAACTGAAGTTGATGCAATAGCTGTGATTTCCATTACATGTCTAGTATTGAGCAGAGATAGATCATATATCATAAAAAGCTTGTGCCTGTATACTGGAACTTTAGGTTTTTCTACTGAATTCCAGATGAACTTGATTTAGTACACATGTGCTCTGCGACTCTGCATGCTTTGAGACCTTATTGTTAATCTTTTGTCATTAAAATCTCAACAGTGATTGTATTAGTTCATCCTAAAATGATGTTTAATTTATTGTATTTGAACATGACTTATTGTTGCTTTGTTTTGAAGGTGGGGCCTGGTGAGGTAGATGATGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGAACAGTAACCCGAGTTCTGATATTTGAGATAACAGAGCCAAATTTTCCCACTGACGAAGCAGTAAGAATCTTTGTTCAGTTTGAGAGATCTGAAGAAACAACTAAAGCGCTTGTTGACCTTGATGGTCGATACTTTGGGGGTAGAACAGTGCGTGCCACATTTTACGACGAGGACAAGTTTAGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGCTTCACCTAG

Protein sequence

>MS.gene56451.t1

GGGGGEGEEREREREEKGREIEIGREIREIRDUIFPVRKHGEGVWGMSGGGRHRLPGVWMDLVLGSRRRLGWELVLVGRULLLRGUWQRWGGNKGKGLGNRNGLGLLLMPVTVSLIRKLRVLTSMVYLPEYCYLETWWGLVRUMMSWKMRUDQNVPSMEQUPEFUYLRUQSQIFPLTKQUESLFSLRDLKKQLKRLLTLMVDTLGVEQCVPHFTTRTSLARMSULQCQEKFLASP