Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57388.t1 | RHN43114.1 | 95 | 502 | 25 | 0 | 1 | 502 | 1 | 502 | 2.90E-262 | 914.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57388.t1 | Q1IFU9 | 40.4 | 156 | 92 | 1 | 343 | 498 | 10 | 164 | 4.4e-25 | 117.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57388.t1 | A0A396GUF7 | 95.0 | 502 | 25 | 0 | 1 | 502 | 1 | 502 | 2.1e-262 | 914.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene57388 | 0.816328 | 5.85E-52 | -1.69E-46 |
| MS.gene049190 | MS.gene57388 | 0.831698 | 1.44E-55 | -1.69E-46 |
| MS.gene049341 | MS.gene57388 | 0.843924 | 1.04E-58 | -1.69E-46 |
| MS.gene049824 | MS.gene57388 | 0.820959 | 5.21E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene57388 | 0.828347 | 9.46E-55 | -1.69E-46 |
| MS.gene049887 | MS.gene57388 | 0.8357 | 1.44E-56 | -1.69E-46 |
| MS.gene049979 | MS.gene57388 | 0.818415 | 1.98E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene57388 | 0.820328 | 7.27E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene57388 | 0.818714 | 1.70E-52 | -1.69E-46 |
| MS.gene050815 | MS.gene57388 | 0.808907 | 2.46E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene57388 | 0.81449 | 1.50E-51 | -1.69E-46 |
| MS.gene050959 | MS.gene57388 | 0.827159 | 1.82E-54 | -1.69E-46 |
| MS.gene051102 | MS.gene57388 | 0.822999 | 1.75E-53 | -1.69E-46 |
| MS.gene051328 | MS.gene57388 | 0.810359 | 1.20E-50 | -1.69E-46 |
| MS.gene051388 | MS.gene57388 | 0.81616 | 6.38E-52 | -1.69E-46 |
| MS.gene05157 | MS.gene57388 | 0.829361 | 5.37E-55 | -1.69E-46 |
| MS.gene051700 | MS.gene57388 | 0.806864 | 6.69E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene57388 | 0.813466 | 2.52E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene57388 | 0.811013 | 8.65E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene57388 | 0.807145 | 5.83E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene57388 | 0.815988 | 6.97E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene57388 | 0.832574 | 8.74E-56 | -1.69E-46 |
| MS.gene052323 | MS.gene57388 | 0.812469 | 4.17E-51 | -1.69E-46 |
| MS.gene052335 | MS.gene57388 | 0.811811 | 5.81E-51 | -1.69E-46 |
| MS.gene052397 | MS.gene57388 | 0.83369 | 4.61E-56 | -1.69E-46 |
| MS.gene052516 | MS.gene57388 | 0.828056 | 1.11E-54 | -1.69E-46 |
| MS.gene052611 | MS.gene57388 | 0.819962 | 8.81E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene57388 | 0.841654 | 4.17E-58 | -1.69E-46 |
| MS.gene052732 | MS.gene57388 | 0.823762 | 1.16E-53 | -1.69E-46 |
| MS.gene052856 | MS.gene57388 | 0.813148 | 2.96E-51 | -1.69E-46 |
| MS.gene052860 | MS.gene57388 | 0.8 | 1.77E-48 | -1.69E-46 |
| MS.gene052863 | MS.gene57388 | 0.809696 | 1.67E-50 | -1.69E-46 |
| MS.gene052879 | MS.gene57388 | 0.807152 | 5.81E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene57388 | 0.851131 | 1.08E-60 | -1.69E-46 |
| MS.gene053144 | MS.gene57388 | 0.853458 | 2.36E-61 | -1.69E-46 |
| MS.gene053174 | MS.gene57388 | 0.843981 | 1.00E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene57388 | 0.811848 | 5.70E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene57388 | 0.810029 | 1.41E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene57388 | 0.813686 | 2.26E-51 | -1.69E-46 |
| MS.gene054250 | MS.gene57388 | 0.805049 | 1.61E-49 | -1.69E-46 |
| MS.gene054550 | MS.gene57388 | 0.833701 | 4.58E-56 | -1.69E-46 |
| MS.gene054584 | MS.gene57388 | 0.864631 | 1.06E-64 | -1.69E-46 |
| MS.gene05462 | MS.gene57388 | 0.842116 | 3.15E-58 | -1.69E-46 |
| MS.gene05478 | MS.gene57388 | 0.817425 | 3.32E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene57388 | 0.842555 | 2.41E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene57388 | 0.841525 | 4.51E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene57388 | 0.847022 | 1.50E-59 | -1.69E-46 |
| MS.gene055469 | MS.gene57388 | 0.825478 | 4.59E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene57388 | 0.860164 | 2.50E-63 | -1.69E-46 |
| MS.gene055537 | MS.gene57388 | 0.810925 | 9.04E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene57388 | -0.850599 | 1.53E-60 | -1.69E-46 |
| MS.gene055890 | MS.gene57388 | 0.822109 | 2.82E-53 | -1.69E-46 |
| MS.gene055891 | MS.gene57388 | 0.83148 | 1.63E-55 | -1.69E-46 |
| MS.gene056043 | MS.gene57388 | -0.849952 | 2.32E-60 | -1.69E-46 |
| MS.gene056308 | MS.gene57388 | 0.801391 | 9.21E-49 | -1.69E-46 |
| MS.gene056368 | MS.gene57388 | 0.801225 | 9.95E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene57388 | 0.836359 | 9.80E-57 | -1.69E-46 |
| MS.gene056507 | MS.gene57388 | 0.811244 | 7.71E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene57388 | 0.82984 | 4.11E-55 | -1.69E-46 |
| MS.gene056584 | MS.gene57388 | 0.830489 | 2.85E-55 | -1.69E-46 |
| MS.gene056760 | MS.gene57388 | 0.819344 | 1.22E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene57388 | 0.819845 | 9.38E-53 | -1.69E-46 |
| MS.gene057314 | MS.gene57388 | 0.808955 | 2.40E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene57388 | 0.8157 | 8.08E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene57388 | 0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene57388 | 0.831082 | 2.04E-55 | -1.69E-46 |
| MS.gene058668 | MS.gene57388 | 0.810202 | 1.30E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene57388 | 0.810772 | 9.76E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene57388 | 0.808631 | 2.82E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene57388 | 0.831377 | 1.73E-55 | -1.69E-46 |
| MS.gene058982 | MS.gene57388 | 0.825803 | 3.84E-54 | -1.69E-46 |
| MS.gene059154 | MS.gene57388 | 0.801796 | 7.60E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene57388 | 0.810768 | 9.78E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene57388 | 0.816721 | 4.78E-52 | -1.69E-46 |
| MS.gene05978 | MS.gene57388 | 0.825584 | 4.33E-54 | -1.69E-46 |
| MS.gene059937 | MS.gene57388 | 0.830455 | 2.91E-55 | -1.69E-46 |
| MS.gene06001 | MS.gene57388 | 0.811545 | 6.63E-51 | -1.69E-46 |
| MS.gene060194 | MS.gene57388 | 0.821339 | 4.25E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene57388 | 0.851691 | 7.53E-61 | -1.69E-46 |
| MS.gene060619 | MS.gene57388 | 0.813523 | 2.45E-51 | -1.69E-46 |
| MS.gene060637 | MS.gene57388 | 0.809167 | 2.16E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57388.t1 | MTR_8g093680 | 96.813 | 502 | 16 | 0 | 1 | 502 | 1 | 502 | 0.0 | 1008 |
| MS.gene57388.t1 | MTR_8g093680 | 94.853 | 408 | 21 | 0 | 1 | 408 | 1 | 408 | 0.0 | 723 |
| MS.gene57388.t1 | MTR_4g088615 | 32.026 | 153 | 104 | 0 | 341 | 493 | 143 | 295 | 1.06e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57388.t1 | AT1G64880 | 60.714 | 504 | 172 | 9 | 12 | 502 | 25 | 515 | 0.0 | 565 |
| MS.gene57388.t1 | AT2G33800 | 32.075 | 159 | 108 | 0 | 335 | 493 | 137 | 295 | 6.67e-18 | 84.7 |
Find 117 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGAGCATCTGGAGCTTT+AGG | 0.197064 | 4.2:-9085070 | None:intergenic |
| GAGAGAAGAATGAGAGATTA+AGG | 0.199671 | 4.2:+9083059 | MS.gene57388:CDS |
| TTCTGCAGCATAAGCTTAAT+AGG | 0.213549 | 4.2:+9083473 | MS.gene57388:CDS |
| CGGACTGAGTATAGGGTTAT+TGG | 0.254625 | 4.2:+9083400 | MS.gene57388:CDS |
| CCGTAATTGGCAGGGTTATC+AGG | 0.268269 | 4.2:-9083532 | None:intergenic |
| AAGAAGTTCCATCACTATTC+TGG | 0.272614 | 4.2:-9083011 | None:intergenic |
| TGAGAGCATCTGGAGCTTTA+GGG | 0.292106 | 4.2:-9085069 | None:intergenic |
| ATCTGGAGCTTTAGGGCCTT+TGG | 0.294046 | 4.2:-9085062 | None:intergenic |
| CGCTTGACGATGCTTATAAA+TGG | 0.295636 | 4.2:+9083335 | MS.gene57388:CDS |
| AACTTCTCTTGGACATCCTT+TGG | 0.327728 | 4.2:-9086611 | None:intergenic |
| TTGTTCCAAGGTATCCATAT+TGG | 0.331911 | 4.2:-9083581 | None:intergenic |
| CTTGTCAATAACATCAAGTT+TGG | 0.343906 | 4.2:-9083713 | None:intergenic |
| GCTGAACTTGAGTATACATT+TGG | 0.357489 | 4.2:+9083754 | MS.gene57388:CDS |
| TCTGCAGCATAAGCTTAATA+GGG | 0.363272 | 4.2:+9083474 | MS.gene57388:CDS |
| TGGCCTGCTTCCACTGCAAC+TGG | 0.368005 | 4.2:+9086279 | MS.gene57388:CDS |
| TGTTCCAAGGTATCCATATT+GGG | 0.371200 | 4.2:-9083580 | None:intergenic |
| AGCTCCAGATGCTCTCAATA+AGG | 0.374070 | 4.2:+9085075 | MS.gene57388:CDS |
| TAAGCTTCGGACTGAGTATA+GGG | 0.382822 | 4.2:+9083393 | MS.gene57388:CDS |
| AGCTAAATGTAGTACGGTTT+GGG | 0.388721 | 4.2:-9086322 | None:intergenic |
| AATAGTGATGGAACTTCTTA+AGG | 0.389577 | 4.2:+9083015 | MS.gene57388:CDS |
| ATGATTTCGAAAGGAAGTTC+AGG | 0.391603 | 4.2:+9083272 | MS.gene57388:CDS |
| CAGCTAAATGTAGTACGGTT+TGG | 0.394109 | 4.2:-9086323 | None:intergenic |
| ACTCCATAAGATCACCTTTA+GGG | 0.395270 | 4.2:+9082918 | MS.gene57388:CDS |
| TTAAGCTTCGGACTGAGTAT+AGG | 0.395446 | 4.2:+9083392 | MS.gene57388:CDS |
| ATACCCTAAAGGTGATCTTA+TGG | 0.406034 | 4.2:-9082921 | None:intergenic |
| GCTTAATAGGGCTTTGAGAT+TGG | 0.406578 | 4.2:+9083486 | MS.gene57388:CDS |
| CCTGATAACCCTGCCAATTA+CGG | 0.407731 | 4.2:+9083532 | MS.gene57388:CDS |
| TTGTTGAATGAGACCGTAAT+TGG | 0.411415 | 4.2:-9083545 | None:intergenic |
| CAGTGATGATGAGGAAGATC+TGG | 0.420747 | 4.2:+9083228 | MS.gene57388:CDS |
| AGAGAAGAATGAGAGATTAA+GGG | 0.425455 | 4.2:+9083060 | MS.gene57388:CDS |
| GGTACCTTATTGAGAGCATC+TGG | 0.431173 | 4.2:-9085079 | None:intergenic |
| CGAGGATGGTTATGATTACA+TGG | 0.431612 | 4.2:+9083117 | MS.gene57388:CDS |
| ATGGATACCTTGGAACAATC+TGG | 0.434043 | 4.2:+9083586 | MS.gene57388:CDS |
| CAGTTCGGCCAAACTTCTCT+TGG | 0.436228 | 4.2:-9086622 | None:intergenic |
| AACTCCATAAGATCACCTTT+AGG | 0.436596 | 4.2:+9082917 | MS.gene57388:CDS |
| AAGGATGTCCAAGAGAAGTT+TGG | 0.439397 | 4.2:+9086614 | MS.gene57388:CDS |
| GGAACAATCTGGATTTGAAA+AGG | 0.439501 | 4.2:+9083597 | MS.gene57388:CDS |
| CCTTTGTGACTTTACAAGTT+CGG | 0.442059 | 4.2:-9084883 | None:intergenic |
| GCATCTTCATCTCCTTGAGC+AGG | 0.449364 | 4.2:-9083628 | None:intergenic |
| GAGACTCTTGCCATGAAAAC+GGG | 0.453113 | 4.2:-9082969 | None:intergenic |
| TAAAGTGGTTACTGAGCAAA+AGG | 0.454004 | 4.2:+9083441 | MS.gene57388:CDS |
| TTAGCATGTGGCAACTATAA+TGG | 0.455598 | 4.2:+9085019 | MS.gene57388:CDS |
| TGAATGGGTTATATTCAGTA+TGG | 0.456241 | 4.2:+9082839 | None:intergenic |
| GCTTGAAAAGGAGAAGCTTA+AGG | 0.457065 | 4.2:+9083162 | MS.gene57388:CDS |
| AGAGACTCTTGCCATGAAAA+CGG | 0.460723 | 4.2:-9082970 | None:intergenic |
| GGCAACTATAATGGTGTTGT+TGG | 0.461710 | 4.2:+9085028 | MS.gene57388:CDS |
| ATCATAACCATCCTCGGTCT+CGG | 0.463201 | 4.2:-9083110 | None:intergenic |
| ACAGCCTTAACTGTATTATG+AGG | 0.478809 | 4.2:-9086469 | None:intergenic |
| AAATCCTCATAATACAGTTA+AGG | 0.482904 | 4.2:+9086465 | MS.gene57388:CDS |
| CAAGTGCAACCAATGTGTTT+CGG | 0.483721 | 4.2:+9082894 | MS.gene57388:CDS |
| TGAATGAGACCGTAATTGGC+AGG | 0.484698 | 4.2:-9083541 | None:intergenic |
| ATCGTCAAGCGTATCCGCTT+CGG | 0.484924 | 4.2:-9083323 | None:intergenic |
| TTAAGGAGGTGGAGAAGGAT+AGG | 0.486790 | 4.2:+9083032 | MS.gene57388:CDS |
| ACTGCAACTGGCATGAAGGC+CGG | 0.491223 | 4.2:+9086291 | MS.gene57388:CDS |
| ATGCCAGTTGCAGTGGAAGC+AGG | 0.491431 | 4.2:-9086282 | None:intergenic |
| TCTTATCGAGAAGCTTGAAA+AGG | 0.493738 | 4.2:+9083150 | MS.gene57388:CDS |
| AAGAATGAGAGATTAAGGGC+TGG | 0.507014 | 4.2:+9083064 | MS.gene57388:CDS |
| TAATTCGATAGGTGTATCTC+TGG | 0.507614 | 4.2:+9086259 | MS.gene57388:intron |
| TACGGTTTGGGCTATTCTGC+CGG | 0.507818 | 4.2:-9086310 | None:intergenic |
| TGAGTATACATTTGGAAGGA+AGG | 0.514885 | 4.2:+9083762 | MS.gene57388:CDS |
| GGCCTTCATGCCAGTTGCAG+TGG | 0.518184 | 4.2:-9086289 | None:intergenic |
| CAAACCGTACTACATTTAGC+TGG | 0.527729 | 4.2:+9086324 | MS.gene57388:CDS |
| AGATCACCTTTAGGGTATGC+AGG | 0.535655 | 4.2:+9082926 | MS.gene57388:CDS |
| AATACTTCTCGACCACAGTT+CGG | 0.537088 | 4.2:-9086637 | None:intergenic |
| CTCGGTCTCGGCATCAATGT+CGG | 0.538282 | 4.2:-9083098 | None:intergenic |
| TTTGAGATTGGTGCAGTGGA+AGG | 0.538637 | 4.2:+9083498 | MS.gene57388:CDS |
| GATGGAACTTCTTAAGGAGG+TGG | 0.540444 | 4.2:+9083021 | MS.gene57388:CDS |
| ACTTCTTAAGGAGGTGGAGA+AGG | 0.540719 | 4.2:+9083027 | MS.gene57388:CDS |
| GGGGCCCAATATGGATACCT+TGG | 0.542164 | 4.2:+9083576 | MS.gene57388:CDS |
| TTCTGATGCCAGAATAGTGA+TGG | 0.552389 | 4.2:+9083003 | MS.gene57388:CDS |
| GAAACCAGCTAAATGTAGTA+CGG | 0.552698 | 4.2:-9086328 | None:intergenic |
| ACTCATGAATCGTCTTAAAG+TGG | 0.555879 | 4.2:+9083426 | MS.gene57388:CDS |
| CATGTAATCATAACCATCCT+CGG | 0.563559 | 4.2:-9083116 | None:intergenic |
| GGGCTTTGAGATTGGTGCAG+TGG | 0.565478 | 4.2:+9083494 | MS.gene57388:CDS |
| TTCCACTGCAACTGGCATGA+AGG | 0.566604 | 4.2:+9086287 | MS.gene57388:CDS |
| TCGAGAAGTATTTGTTGTGA+TGG | 0.567736 | 4.2:+9086648 | MS.gene57388:CDS |
| TCTGGATGCTAATCAGAAGA+AGG | 0.568563 | 4.2:+9083246 | MS.gene57388:CDS |
| TACATTTGGAAGGAAGGGTA+AGG | 0.569640 | 4.2:+9083768 | MS.gene57388:CDS |
| GAAACTACCTTTCGGAAAAG+TGG | 0.574004 | 4.2:-9083856 | None:intergenic |
| CCATGAAAACGGGAACATGA+AGG | 0.574072 | 4.2:-9082959 | None:intergenic |
| GGAGAAGCTTAAGGAGACCT+CGG | 0.574929 | 4.2:+9083171 | MS.gene57388:CDS |
| TTTCAAGAATGTCAAGTCAA+AGG | 0.575887 | 4.2:+9086347 | MS.gene57388:CDS |
| ATTGATGCCGAGACCGAGGA+TGG | 0.579776 | 4.2:+9083103 | MS.gene57388:CDS |
| GTAGTGCCTGCATACCCTAA+AGG | 0.580908 | 4.2:-9082932 | None:intergenic |
| AAGGAAGGGTAAGGCTCTAG+AGG | 0.583467 | 4.2:+9083777 | MS.gene57388:CDS |
| AGAAGGTTGATGATTTCGAA+AGG | 0.585774 | 4.2:+9083263 | MS.gene57388:CDS |
| TTCAAATCCAGATTGTTCCA+AGG | 0.587564 | 4.2:-9083593 | None:intergenic |
| GAGTATACATTTGGAAGGAA+GGG | 0.590258 | 4.2:+9083763 | MS.gene57388:CDS |
| TATGGAGTTCCGAAACACAT+TGG | 0.593450 | 4.2:-9082903 | None:intergenic |
| AACTTGAGTATACATTTGGA+AGG | 0.597121 | 4.2:+9083758 | MS.gene57388:CDS |
| GTTCCAGATTGAAACGCCAA+AGG | 0.599069 | 4.2:+9086595 | MS.gene57388:intron |
| TCATCACTGTCAGAATCAGT+CGG | 0.599404 | 4.2:-9083214 | None:intergenic |
| TGTTATTGACAAGAGACTTG+AGG | 0.599515 | 4.2:+9083723 | MS.gene57388:CDS |
| TCTCATTCAACAAGAACAAG+GGG | 0.605592 | 4.2:+9083555 | MS.gene57388:CDS |
| GAATGAGACCGTAATTGGCA+GGG | 0.605751 | 4.2:-9083540 | None:intergenic |
| GATTCAGAATTTCACCGAAG+CGG | 0.607335 | 4.2:+9083309 | MS.gene57388:CDS |
| GTCTCATTCAACAAGAACAA+GGG | 0.608108 | 4.2:+9083554 | MS.gene57388:CDS |
| AAGGAGGATAAACCTGCTCA+AGG | 0.610936 | 4.2:+9083616 | MS.gene57388:CDS |
| TGGTTACTGAGCAAAAGGAT+AGG | 0.618062 | 4.2:+9083446 | MS.gene57388:CDS |
| TATATTCAGTATGGTAGACA+CGG | 0.630793 | 4.2:+9082848 | MS.gene57388:CDS |
| ACAATCTGGATTTGAAAAGG+AGG | 0.632065 | 4.2:+9083600 | MS.gene57388:CDS |
| GGTCTCATTCAACAAGAACA+AGG | 0.634169 | 4.2:+9083553 | MS.gene57388:CDS |
| CGACATTGATGCCGAGACCG+AGG | 0.635504 | 4.2:+9083099 | MS.gene57388:CDS |
| AGTGATGGAACTTCTTAAGG+AGG | 0.643210 | 4.2:+9083018 | MS.gene57388:CDS |
| AGAGAAGTTTGGCCGAACTG+TGG | 0.645250 | 4.2:+9086625 | MS.gene57388:CDS |
| ATTTCGAAAGGAAGTTCAGG+AGG | 0.648062 | 4.2:+9083275 | MS.gene57388:CDS |
| TGCTGCTGACAACGACGATG+AGG | 0.653652 | 4.2:+9083648 | MS.gene57388:CDS |
| AGAGATCAAAGATCTTGCAG+AGG | 0.657591 | 4.2:+9083801 | MS.gene57388:CDS |
| CCGAACTTGTAAAGTCACAA+AGG | 0.657693 | 4.2:+9084883 | MS.gene57388:CDS |
| TATACTGCTATGTTAGCATG+TGG | 0.662521 | 4.2:+9085007 | MS.gene57388:CDS |
| TGATTCTGACAGTGATGATG+AGG | 0.665645 | 4.2:+9083219 | MS.gene57388:CDS |
| GCATTATGTAGAGCGACACG+AGG | 0.669562 | 4.2:+9086002 | MS.gene57388:CDS |
| TTCGTATCGATTCAACTCCG+AGG | 0.679730 | 4.2:-9083188 | None:intergenic |
| TGTCTTCAAAGCGCTTAATG+CGG | 0.682894 | 4.2:+9086489 | MS.gene57388:CDS |
| CTCATTCAACAAGAACAAGG+GGG | 0.688652 | 4.2:+9083556 | MS.gene57388:CDS |
| TCATTCAACAAGAACAAGGG+GGG | 0.694924 | 4.2:+9083557 | MS.gene57388:CDS |
| GAGGATGGTTATGATTACAT+GGG | 0.717963 | 4.2:+9083118 | MS.gene57388:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATCATATTGAAATAA+TGG | + | chr4.2:9085934-9085953 | MS.gene57388:intron | 10.0% |
| !! | AATAATAAAAAGATGAAAAG+TGG | - | chr4.2:9085614-9085633 | None:intergenic | 15.0% |
| !! | GTAAAAATTTATTGAAATAC+TGG | - | chr4.2:9086545-9086564 | None:intergenic | 15.0% |
| !!! | TTCATTTTAAATGAATTGAA+GGG | + | chr4.2:9084073-9084092 | MS.gene57388:intron | 15.0% |
| !!! | TTTTTTTTTTTTGTCTTCAT+AGG | + | chr4.2:9086429-9086448 | MS.gene57388:intron | 15.0% |
| !! | AAAAACATAAAAATGGTAAG+TGG | - | chr4.2:9084789-9084808 | None:intergenic | 20.0% |
| !! | AAAACATAAAAATGGTAAGT+GGG | - | chr4.2:9084788-9084807 | None:intergenic | 20.0% |
| !! | AAAGAAACTATGATATAAAC+GGG | - | chr4.2:9086111-9086130 | None:intergenic | 20.0% |
| !! | AGAAAAAGACAACATATTAT+TGG | + | chr4.2:9083690-9083709 | MS.gene57388:CDS | 20.0% |
| !! | ATAAAGCAAAAACAAGAATA+TGG | - | chr4.2:9084759-9084778 | None:intergenic | 20.0% |
| !! | ATTATAAGTGAAAAAAAGGA+AGG | + | chr4.2:9084469-9084488 | MS.gene57388:intron | 20.0% |
| !! | GAAAGAAACTATGATATAAA+CGG | - | chr4.2:9086112-9086131 | None:intergenic | 20.0% |
| !! | TAAAGCAAAAACAAGAATAT+GGG | - | chr4.2:9084758-9084777 | None:intergenic | 20.0% |
| !! | TGGTTTATTTGAATATAATC+AGG | + | chr4.2:9085954-9085973 | MS.gene57388:intron | 20.0% |
| !! | TTATAAGTGAAAAAAAGGAA+GGG | + | chr4.2:9084470-9084489 | MS.gene57388:intron | 20.0% |
| !!! | AAAAAGAAGAAATTTTCCAA+AGG | - | chr4.2:9084631-9084650 | None:intergenic | 20.0% |
| !!! | ACAAATAAAAGCATTTTTGT+AGG | + | chr4.2:9084663-9084682 | MS.gene57388:intron | 20.0% |
| !!! | ATACACCAAATTTAAAACAT+TGG | - | chr4.2:9085786-9085805 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTCACTTATAATT+GGG | - | chr4.2:9084468-9084487 | None:intergenic | 20.0% |
| !!! | GTTCATTTTAAATGAATTGA+AGG | + | chr4.2:9084072-9084091 | MS.gene57388:intron | 20.0% |
| !!! | TCCTTTTTTTCACTTATAAT+TGG | - | chr4.2:9084469-9084488 | None:intergenic | 20.0% |
| !!! | TTTATATCAAGTTTCAAGTA+AGG | + | chr4.2:9083961-9083980 | MS.gene57388:intron | 20.0% |
| !!! | TTTGACCAATGTTTTAAATT+TGG | + | chr4.2:9085778-9085797 | MS.gene57388:intron | 20.0% |
| !!! | TTTGCTGAAACTTTATATTT+TGG | - | chr4.2:9085839-9085858 | None:intergenic | 20.0% |
| !!! | TTTTGGTTAAATAATCGTTT+TGG | + | chr4.2:9084812-9084831 | MS.gene57388:intron | 20.0% |
| ! | AAATAGATCCATATCTCTTA+TGG | - | chr4.2:9085218-9085237 | None:intergenic | 25.0% |
| ! | AAATCCTCATAATACAGTTA+AGG | + | chr4.2:9086465-9086484 | MS.gene57388:CDS | 25.0% |
| ! | AACAAACTTAATACTTCCTT+TGG | + | chr4.2:9084502-9084521 | MS.gene57388:intron | 25.0% |
| ! | AACATCTTATAAAAAGACCA+AGG | + | chr4.2:9086050-9086069 | MS.gene57388:CDS | 25.0% |
| ! | AACTAAAAAGTTGTATTGGA+GGG | - | chr4.2:9084325-9084344 | None:intergenic | 25.0% |
| ! | AAGACTTAATAAGATATTGC+TGG | - | chr4.2:9085103-9085122 | None:intergenic | 25.0% |
| ! | AATATAAAACCCTCTTCATT+TGG | - | chr4.2:9084351-9084370 | None:intergenic | 25.0% |
| ! | AATATCAGCTAAAATGTCAT+AGG | - | chr4.2:9086567-9086586 | None:intergenic | 25.0% |
| ! | ATATAAAACCCTCTTCATTT+GGG | - | chr4.2:9084350-9084369 | None:intergenic | 25.0% |
| ! | ATGTGATGATAGATTGATAT+AGG | + | chr4.2:9085339-9085358 | MS.gene57388:intron | 25.0% |
| ! | ATTGCATAATAGAAAACATC+TGG | + | chr4.2:9085446-9085465 | MS.gene57388:intron | 25.0% |
| ! | CAATTTATAATAATCAGCCA+AGG | - | chr4.2:9085577-9085596 | None:intergenic | 25.0% |
| ! | CCCAATTATAAGTGAAAAAA+AGG | + | chr4.2:9084465-9084484 | MS.gene57388:intron | 25.0% |
| ! | GCAAAAAATTGATAAGTTTG+AGG | + | chr4.2:9083360-9083379 | MS.gene57388:CDS | 25.0% |
| ! | TCAAAATCAGATTTCATACT+TGG | - | chr4.2:9085763-9085782 | None:intergenic | 25.0% |
| ! | TCAATCTATCATCACATAAT+TGG | - | chr4.2:9085336-9085355 | None:intergenic | 25.0% |
| ! | TCAGAAAAACATGAATCAAT+AGG | - | chr4.2:9085275-9085294 | None:intergenic | 25.0% |
| ! | TGATAGATTGATATAGGTTA+TGG | + | chr4.2:9085345-9085364 | MS.gene57388:intron | 25.0% |
| ! | TTTACAAACAAGTATAGACA+CGG | - | chr4.2:9084731-9084750 | None:intergenic | 25.0% |
| !! | ATTTTAAATGAATTGAAGGG+TGG | + | chr4.2:9084076-9084095 | MS.gene57388:intron | 25.0% |
| !! | GATGAAAAGTGGAAATTTTT+AGG | - | chr4.2:9085603-9085622 | None:intergenic | 25.0% |
| !! | TGAGATATTTGGTTCATAAT+TGG | + | chr4.2:9085376-9085395 | MS.gene57388:intron | 25.0% |
| !!! | ACTAAATCAGTTATTTTCCT+TGG | + | chr4.2:9085557-9085576 | MS.gene57388:intron | 25.0% |
| !!! | GAATTTTAATGTTCCATATG+TGG | + | chr4.2:9084689-9084708 | MS.gene57388:intron | 25.0% |
| !!! | TGTTTTTCTGAGATTTGTAT+TGG | + | chr4.2:9085284-9085303 | MS.gene57388:intron | 25.0% |
| AACTTGAGTATACATTTGGA+AGG | + | chr4.2:9083758-9083777 | MS.gene57388:CDS | 30.0% | |
| AAGAAAATATGAGAGCAAGT+GGG | - | chr4.2:9084943-9084962 | None:intergenic | 30.0% | |
| AATTTGAATACCTTGTCCTT+TGG | + | chr4.2:9084612-9084631 | MS.gene57388:intron | 30.0% | |
| ACTAAAAAGTTGTATTGGAG+GGG | - | chr4.2:9084324-9084343 | None:intergenic | 30.0% | |
| AGAGAAGAATGAGAGATTAA+GGG | + | chr4.2:9083060-9083079 | MS.gene57388:CDS | 30.0% | |
| CAATCTGCATTTAGCAAATA+GGG | + | chr4.2:9084013-9084032 | MS.gene57388:intron | 30.0% | |
| CTTGTCAATAACATCAAGTT+TGG | - | chr4.2:9083716-9083735 | None:intergenic | 30.0% | |
| GAAATGTAAATAAAACCTGC+TGG | - | chr4.2:9085687-9085706 | None:intergenic | 30.0% | |
| GAACTAAAAAGTTGTATTGG+AGG | - | chr4.2:9084326-9084345 | None:intergenic | 30.0% | |
| GTTAATAAGCTTGCAACTAT+TGG | - | chr4.2:9085253-9085272 | None:intergenic | 30.0% | |
| GTTTCAATTCTCATGATCTA+GGG | + | chr4.2:9084968-9084987 | MS.gene57388:intron | 30.0% | |
| TAAGAAAATATGAGAGCAAG+TGG | - | chr4.2:9084944-9084963 | None:intergenic | 30.0% | |
| TATAAAACCCTCTTCATTTG+GGG | - | chr4.2:9084349-9084368 | None:intergenic | 30.0% | |
| TATATTCAGTATGGTAGACA+CGG | + | chr4.2:9082848-9082867 | MS.gene57388:CDS | 30.0% | |
| TGGAAGAAATAGAGTACATT+GGG | - | chr4.2:9084408-9084427 | None:intergenic | 30.0% | |
| TGTCATCTGTATAATTCGAT+AGG | + | chr4.2:9086248-9086267 | MS.gene57388:intron | 30.0% | |
| TGTTTCAATTCTCATGATCT+AGG | + | chr4.2:9084967-9084986 | MS.gene57388:intron | 30.0% | |
| TTACAAACAAGTATAGACAC+GGG | - | chr4.2:9084730-9084749 | None:intergenic | 30.0% | |
| TTTCAAGAATGTCAAGTCAA+AGG | + | chr4.2:9086347-9086366 | MS.gene57388:CDS | 30.0% | |
| ! | AACCAGTAGCCTTTTATAAT+TGG | - | chr4.2:9084530-9084549 | None:intergenic | 30.0% |
| ! | AAGAAATTTTCCAAAGGACA+AGG | - | chr4.2:9084625-9084644 | None:intergenic | 30.0% |
| ! | AATAGTGATGGAACTTCTTA+AGG | + | chr4.2:9083015-9083034 | MS.gene57388:CDS | 30.0% |
| ! | ACCAGTAGCCTTTTATAATT+GGG | - | chr4.2:9084529-9084548 | None:intergenic | 30.0% |
| ! | ACTTGCCTAATTTTCTGATT+CGG | + | chr4.2:9083881-9083900 | MS.gene57388:intron | 30.0% |
| ! | ACTTGCTCTCATATTTTCTT+AGG | + | chr4.2:9084943-9084962 | MS.gene57388:intron | 30.0% |
| ! | ATTTGTATTGGCAGCTATAT+TGG | + | chr4.2:9085296-9085315 | MS.gene57388:intron | 30.0% |
| ! | TCAATTTTACATCAAAACCC+TGG | - | chr4.2:9084853-9084872 | None:intergenic | 30.0% |
| ! | TGAAAAAAAGGAAGGGTTTT+GGG | + | chr4.2:9084477-9084496 | MS.gene57388:intron | 30.0% |
| ! | TGGTGTATTCTTGAGAATTT+TGG | + | chr4.2:9085798-9085817 | MS.gene57388:intron | 30.0% |
| ! | TGGTTAGTCATTGAGATATT+TGG | + | chr4.2:9085365-9085384 | MS.gene57388:intron | 30.0% |
| ! | TTTGTATTGGCAGCTATATT+GGG | + | chr4.2:9085297-9085316 | MS.gene57388:intron | 30.0% |
| ! | TTTTTGTCTTCATAGGTTGT+TGG | + | chr4.2:9086436-9086455 | MS.gene57388:intron | 30.0% |
| !!! | ATCGTTTTGGTTGTTGTATA+TGG | + | chr4.2:9084825-9084844 | MS.gene57388:intron | 30.0% |
| !!! | CTTTTTCAGAATGAATTGAC+AGG | + | chr4.2:9085725-9085744 | MS.gene57388:intron | 30.0% |
| !!! | TTTTAACTTGCTAAAACTCG+AGG | - | chr4.2:9084047-9084066 | None:intergenic | 30.0% |
| AACTCCATAAGATCACCTTT+AGG | + | chr4.2:9082917-9082936 | MS.gene57388:CDS | 35.0% | |
| AAGAAATAGAGTACATTGGG+AGG | - | chr4.2:9084405-9084424 | None:intergenic | 35.0% | |
| AAGAAGTTCCATCACTATTC+TGG | - | chr4.2:9083014-9083033 | None:intergenic | 35.0% | |
| ACAATCTGGATTTGAAAAGG+AGG | + | chr4.2:9083600-9083619 | MS.gene57388:CDS | 35.0% | |
| ACAGCCTTAACTGTATTATG+AGG | - | chr4.2:9086472-9086491 | None:intergenic | 35.0% | |
| ACTCATGAATCGTCTTAAAG+TGG | + | chr4.2:9083426-9083445 | MS.gene57388:CDS | 35.0% | |
| ACTCCATAAGATCACCTTTA+GGG | + | chr4.2:9082918-9082937 | MS.gene57388:CDS | 35.0% | |
| AGAAATAGAGTACATTGGGA+GGG | - | chr4.2:9084404-9084423 | None:intergenic | 35.0% | |
| AGAGCAAACACTAAAATTGC+AGG | - | chr4.2:9086405-9086424 | None:intergenic | 35.0% | |
| AGATCCATATCTCTTATGGT+GGG | - | chr4.2:9085214-9085233 | None:intergenic | 35.0% | |
| AGCTAAATGTAGTACGGTTT+GGG | - | chr4.2:9086325-9086344 | None:intergenic | 35.0% | |
| ATAAAACCCTCTTCATTTGG+GGG | - | chr4.2:9084348-9084367 | None:intergenic | 35.0% | |
| ATACCCTAAAGGTGATCTTA+TGG | - | chr4.2:9082924-9082943 | None:intergenic | 35.0% | |
| ATGACAAGCATAAGACATAC+AGG | - | chr4.2:9086218-9086237 | None:intergenic | 35.0% | |
| ATGATTTCGAAAGGAAGTTC+AGG | + | chr4.2:9083272-9083291 | MS.gene57388:CDS | 35.0% | |
| CAACACCGAATCAGAAAATT+AGG | - | chr4.2:9083889-9083908 | None:intergenic | 35.0% | |
| CAATGCATAAGACATGGATA+AGG | - | chr4.2:9085494-9085513 | None:intergenic | 35.0% | |
| CACTTATAATTGGGACCAAA+GGG | - | chr4.2:9084459-9084478 | None:intergenic | 35.0% | |
| CATGTAATCATAACCATCCT+CGG | - | chr4.2:9083119-9083138 | None:intergenic | 35.0% | |
| CCTTTGGTCCCAATTATAAA+AGG | + | chr4.2:9084518-9084537 | MS.gene57388:intron | 35.0% | |
| CCTTTGTGACTTTACAAGTT+CGG | - | chr4.2:9084886-9084905 | None:intergenic | 35.0% | |
| CTAAAAAGTTGTATTGGAGG+GGG | - | chr4.2:9084323-9084342 | None:intergenic | 35.0% | |
| GAAACCAGCTAAATGTAGTA+CGG | - | chr4.2:9086331-9086350 | None:intergenic | 35.0% | |
| GAGAGAAGAATGAGAGATTA+AGG | + | chr4.2:9083059-9083078 | MS.gene57388:CDS | 35.0% | |
| GAGGATGGTTATGATTACAT+GGG | + | chr4.2:9083118-9083137 | MS.gene57388:CDS | 35.0% | |
| GAGTATACATTTGGAAGGAA+GGG | + | chr4.2:9083763-9083782 | MS.gene57388:CDS | 35.0% | |
| GCAATCTGCATTTAGCAAAT+AGG | + | chr4.2:9084012-9084031 | MS.gene57388:intron | 35.0% | |
| GCATTAAACATGATGCACAT+GGG | - | chr4.2:9085888-9085907 | None:intergenic | 35.0% | |
| GCTGAACTTGAGTATACATT+TGG | + | chr4.2:9083754-9083773 | MS.gene57388:CDS | 35.0% | |
| GGAACAATCTGGATTTGAAA+AGG | + | chr4.2:9083597-9083616 | MS.gene57388:CDS | 35.0% | |
| GGGGAACTAAAAAGTTGTAT+TGG | - | chr4.2:9084329-9084348 | None:intergenic | 35.0% | |
| GTCTCATTCAACAAGAACAA+GGG | + | chr4.2:9083554-9083573 | MS.gene57388:CDS | 35.0% | |
| GTGGAAGAAATAGAGTACAT+TGG | - | chr4.2:9084409-9084428 | None:intergenic | 35.0% | |
| TAAAAAGTTGTATTGGAGGG+GGG | - | chr4.2:9084322-9084341 | None:intergenic | 35.0% | |
| TAAAGTGGTTACTGAGCAAA+AGG | + | chr4.2:9083441-9083460 | MS.gene57388:CDS | 35.0% | |
| TAATTCGATAGGTGTATCTC+TGG | + | chr4.2:9086259-9086278 | MS.gene57388:intron | 35.0% | |
| TACTCTTACTTTCTCACCTT+AGG | + | chr4.2:9084102-9084121 | MS.gene57388:intron | 35.0% | |
| TAGATCCATATCTCTTATGG+TGG | - | chr4.2:9085215-9085234 | None:intergenic | 35.0% | |
| TATACTGCTATGTTAGCATG+TGG | + | chr4.2:9085007-9085026 | MS.gene57388:CDS | 35.0% | |
| TCACTTATAATTGGGACCAA+AGG | - | chr4.2:9084460-9084479 | None:intergenic | 35.0% | |
| TCCCAATTATAAAAGGCTAC+TGG | + | chr4.2:9084525-9084544 | MS.gene57388:intron | 35.0% | |
| TCTCAAATGAGTAATGAACG+AGG | + | chr4.2:9086173-9086192 | MS.gene57388:intron | 35.0% | |
| TCTCATTCAACAAGAACAAG+GGG | + | chr4.2:9083555-9083574 | MS.gene57388:CDS | 35.0% | |
| TCTGCAGCATAAGCTTAATA+GGG | + | chr4.2:9083474-9083493 | MS.gene57388:CDS | 35.0% | |
| TCTTATCGAGAAGCTTGAAA+AGG | + | chr4.2:9083150-9083169 | MS.gene57388:CDS | 35.0% | |
| TCTTCAAGTCATGCTTAAGT+TGG | + | chr4.2:9085123-9085142 | MS.gene57388:intron | 35.0% | |
| TGACCAAAAAAAGCTGAAGA+TGG | + | chr4.2:9086378-9086397 | MS.gene57388:intron | 35.0% | |
| TGAGTATACATTTGGAAGGA+AGG | + | chr4.2:9083762-9083781 | MS.gene57388:CDS | 35.0% | |
| TGATATAAACGGGCAATTAC+TGG | - | chr4.2:9086101-9086120 | None:intergenic | 35.0% | |
| TGCATTAAACATGATGCACA+TGG | - | chr4.2:9085889-9085908 | None:intergenic | 35.0% | |
| TGTTATTGACAAGAGACTTG+AGG | + | chr4.2:9083723-9083742 | MS.gene57388:CDS | 35.0% | |
| TTAGCATGTGGCAACTATAA+TGG | + | chr4.2:9085019-9085038 | MS.gene57388:CDS | 35.0% | |
| TTCAAATCCAGATTGTTCCA+AGG | - | chr4.2:9083596-9083615 | None:intergenic | 35.0% | |
| TTCATAACTCGAGTTACAGA+AGG | + | chr4.2:9085632-9085651 | MS.gene57388:intron | 35.0% | |
| TTCTATCTATTCTAACCAGC+AGG | + | chr4.2:9085669-9085688 | MS.gene57388:intron | 35.0% | |
| TTCTGCAGCATAAGCTTAAT+AGG | + | chr4.2:9083473-9083492 | MS.gene57388:CDS | 35.0% | |
| TTGTTGAATGAGACCGTAAT+TGG | - | chr4.2:9083548-9083567 | None:intergenic | 35.0% | |
| ! | AGGACAAGCATTTTAAGCTT+CGG | + | chr4.2:9083380-9083399 | MS.gene57388:CDS | 35.0% |
| ! | CAATAAAAGTGCACCACATA+TGG | - | chr4.2:9084705-9084724 | None:intergenic | 35.0% |
| ! | CCTTTTATAATTGGGACCAA+AGG | - | chr4.2:9084521-9084540 | None:intergenic | 35.0% |
| ! | GAAAAAAAGGAAGGGTTTTG+GGG | + | chr4.2:9084478-9084497 | MS.gene57388:intron | 35.0% |
| ! | GGATACAGATTTTACTACCT+TGG | - | chr4.2:9086070-9086089 | None:intergenic | 35.0% |
| ! | GTGAAAAAAAGGAAGGGTTT+TGG | + | chr4.2:9084476-9084495 | MS.gene57388:intron | 35.0% |
| ! | GTTACAGAAGGTGTATTAAC+TGG | + | chr4.2:9085644-9085663 | MS.gene57388:intron | 35.0% |
| ! | TGTTCCAAGGTATCCATATT+GGG | - | chr4.2:9083583-9083602 | None:intergenic | 35.0% |
| ! | TTGTTCCAAGGTATCCATAT+TGG | - | chr4.2:9083584-9083603 | None:intergenic | 35.0% |
| ! | TTTGGTTCATAATTGGTGTG+AGG | + | chr4.2:9085383-9085402 | MS.gene57388:intron | 35.0% |
| !! | AAAAAAAGGAAGGGTTTTGG+GGG | + | chr4.2:9084479-9084498 | MS.gene57388:intron | 35.0% |
| !! | AGAAGGTTGATGATTTCGAA+AGG | + | chr4.2:9083263-9083282 | MS.gene57388:CDS | 35.0% |
| AAAAAGTTGTATTGGAGGGG+GGG | - | chr4.2:9084321-9084340 | None:intergenic | 40.0% | |
| AAACTCCCAAACAAAGCCTA+AGG | - | chr4.2:9084121-9084140 | None:intergenic | 40.0% | |
| AACTTCTCTTGGACATCCTT+TGG | - | chr4.2:9086614-9086633 | None:intergenic | 40.0% | |
| AAGAATGAGAGATTAAGGGC+TGG | + | chr4.2:9083064-9083083 | MS.gene57388:CDS | 40.0% | |
| AAGACATACAGGATAAACGC+AGG | - | chr4.2:9086207-9086226 | None:intergenic | 40.0% | |
| AAGGATGTCCAAGAGAAGTT+TGG | + | chr4.2:9086614-9086633 | MS.gene57388:CDS | 40.0% | |
| AATACTTCTCGACCACAGTT+CGG | - | chr4.2:9086640-9086659 | None:intergenic | 40.0% | |
| AGAGACTCTTGCCATGAAAA+CGG | - | chr4.2:9082973-9082992 | None:intergenic | 40.0% | |
| AGAGATCAAAGATCTTGCAG+AGG | + | chr4.2:9083801-9083820 | MS.gene57388:CDS | 40.0% | |
| ATGGATACCTTGGAACAATC+TGG | + | chr4.2:9083586-9083605 | MS.gene57388:CDS | 40.0% | |
| ATTTCGAAAGGAAGTTCAGG+AGG | + | chr4.2:9083275-9083294 | MS.gene57388:CDS | 40.0% | |
| CAAACCGTACTACATTTAGC+TGG | + | chr4.2:9086324-9086343 | MS.gene57388:CDS | 40.0% | |
| CAAGTGCAACCAATGTGTTT+CGG | + | chr4.2:9082894-9082913 | MS.gene57388:CDS | 40.0% | |
| CAGCTAAATGTAGTACGGTT+TGG | - | chr4.2:9086326-9086345 | None:intergenic | 40.0% | |
| CCGAACTTGTAAAGTCACAA+AGG | + | chr4.2:9084883-9084902 | MS.gene57388:CDS | 40.0% | |
| CGAGGATGGTTATGATTACA+TGG | + | chr4.2:9083117-9083136 | MS.gene57388:CDS | 40.0% | |
| CGCTTGACGATGCTTATAAA+TGG | + | chr4.2:9083335-9083354 | MS.gene57388:CDS | 40.0% | |
| CTCATTCAACAAGAACAAGG+GGG | + | chr4.2:9083556-9083575 | MS.gene57388:CDS | 40.0% | |
| GAAACTACCTTTCGGAAAAG+TGG | - | chr4.2:9083859-9083878 | None:intergenic | 40.0% | |
| GAAATAGAGTACATTGGGAG+GGG | - | chr4.2:9084403-9084422 | None:intergenic | 40.0% | |
| GATTCAGAATTTCACCGAAG+CGG | + | chr4.2:9083309-9083328 | MS.gene57388:CDS | 40.0% | |
| GCAAGTGGGAAAAACATAGA+TGG | - | chr4.2:9084929-9084948 | None:intergenic | 40.0% | |
| GCAAGTGTGAAACTACCTTT+CGG | - | chr4.2:9083867-9083886 | None:intergenic | 40.0% | |
| GCTTGAAAAGGAGAAGCTTA+AGG | + | chr4.2:9083162-9083181 | MS.gene57388:CDS | 40.0% | |
| GGTCTCATTCAACAAGAACA+AGG | + | chr4.2:9083553-9083572 | MS.gene57388:CDS | 40.0% | |
| GGTTGTTGTATATGGTTCCA+GGG | + | chr4.2:9084833-9084852 | MS.gene57388:intron | 40.0% | |
| GTGGGAAAAACATAGATGGA+AGG | - | chr4.2:9084925-9084944 | None:intergenic | 40.0% | |
| TAAGCTTCGGACTGAGTATA+GGG | + | chr4.2:9083393-9083412 | MS.gene57388:CDS | 40.0% | |
| TACATTTGGAAGGAAGGGTA+AGG | + | chr4.2:9083768-9083787 | MS.gene57388:CDS | 40.0% | |
| TATAATTGGGACCAAAGGGA+GGG | - | chr4.2:9084455-9084474 | None:intergenic | 40.0% | |
| TATGGAGTTCCGAAACACAT+TGG | - | chr4.2:9082906-9082925 | None:intergenic | 40.0% | |
| TCAATTCTCATGATCTAGGG+AGG | + | chr4.2:9084971-9084990 | MS.gene57388:intron | 40.0% | |
| TCATAATTGGTGTGAGGATC+TGG | + | chr4.2:9085389-9085408 | MS.gene57388:intron | 40.0% | |
| TCATCACTGTCAGAATCAGT+CGG | - | chr4.2:9083217-9083236 | None:intergenic | 40.0% | |
| TCATTCAACAAGAACAAGGG+GGG | + | chr4.2:9083557-9083576 | MS.gene57388:CDS | 40.0% | |
| TCTGGATGCTAATCAGAAGA+AGG | + | chr4.2:9083246-9083265 | MS.gene57388:CDS | 40.0% | |
| TGGTTACTGAGCAAAAGGAT+AGG | + | chr4.2:9083446-9083465 | MS.gene57388:CDS | 40.0% | |
| TGGTTGTTGTATATGGTTCC+AGG | + | chr4.2:9084832-9084851 | MS.gene57388:intron | 40.0% | |
| TTAAGCTTCGGACTGAGTAT+AGG | + | chr4.2:9083392-9083411 | MS.gene57388:CDS | 40.0% | |
| TTAGTTCCCCCAAATGAAGA+GGG | + | chr4.2:9084339-9084358 | MS.gene57388:intron | 40.0% | |
| TTATAATTGGGACCAAAGGG+AGG | - | chr4.2:9084456-9084475 | None:intergenic | 40.0% | |
| TTCTGATGCCAGAATAGTGA+TGG | + | chr4.2:9083003-9083022 | MS.gene57388:CDS | 40.0% | |
| ! | AGTATGGTAGACACGGTTTT+CGG | + | chr4.2:9082855-9082874 | MS.gene57388:CDS | 40.0% |
| ! | AGTGATGGAACTTCTTAAGG+AGG | + | chr4.2:9083018-9083037 | MS.gene57388:CDS | 40.0% |
| ! | CTATATTGGGCACTGTTCTT+TGG | + | chr4.2:9085310-9085329 | MS.gene57388:intron | 40.0% |
| ! | TGATTCTGACAGTGATGATG+AGG | + | chr4.2:9083219-9083238 | MS.gene57388:CDS | 40.0% |
| ! | TGTCTTCAAAGCGCTTAATG+CGG | + | chr4.2:9086489-9086508 | MS.gene57388:CDS | 40.0% |
| ! | TTTAGTTCCCCCAAATGAAG+AGG | + | chr4.2:9084338-9084357 | MS.gene57388:intron | 40.0% |
| ! | TTTTTCCAAAACCCTCCCTT+TGG | + | chr4.2:9084441-9084460 | MS.gene57388:intron | 40.0% |
| !! | AAGAAGACCACTTTTCCGAA+AGG | + | chr4.2:9083849-9083868 | MS.gene57388:CDS | 40.0% |
| !! | GCTTAATAGGGCTTTGAGAT+TGG | + | chr4.2:9083486-9083505 | MS.gene57388:CDS | 40.0% |
| !! | GGCAACTATAATGGTGTTGT+TGG | + | chr4.2:9085028-9085047 | MS.gene57388:CDS | 40.0% |
| !! | TCTCACCTTAGGCTTTGTTT+GGG | + | chr4.2:9084113-9084132 | MS.gene57388:intron | 40.0% |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | + | chr4.2:9084120-9084139 | MS.gene57388:intron | 40.0% |
| !! | TTCTCACCTTAGGCTTTGTT+TGG | + | chr4.2:9084112-9084131 | MS.gene57388:intron | 40.0% |
| !!! | AAGGGAGGGTTTTGGAAAAA+AGG | - | chr4.2:9084441-9084460 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTGGAAAAAAGGA+AGG | - | chr4.2:9084437-9084456 | None:intergenic | 40.0% |
| !!! | GGACCATCTTCAGCTTTTTT+TGG | - | chr4.2:9086384-9086403 | None:intergenic | 40.0% |
| !!! | GTTGGTTTTGCAAAAGCCAA+AGG | + | chr4.2:9085046-9085065 | MS.gene57388:CDS | 40.0% |
| AAGGAGGATAAACCTGCTCA+AGG | + | chr4.2:9083616-9083635 | MS.gene57388:CDS | 45.0% | |
| ACCACCCACCATAAGAGATA+TGG | + | chr4.2:9085207-9085226 | MS.gene57388:intron | 45.0% | |
| ACTTCTTAAGGAGGTGGAGA+AGG | + | chr4.2:9083027-9083046 | MS.gene57388:CDS | 45.0% | |
| AGCTCCAGATGCTCTCAATA+AGG | + | chr4.2:9085075-9085094 | MS.gene57388:CDS | 45.0% | |
| ATCATAACCATCCTCGGTCT+CGG | - | chr4.2:9083113-9083132 | None:intergenic | 45.0% | |
| CAATTCCAGTGAGAGAACAG+GGG | - | chr4.2:9085430-9085449 | None:intergenic | 45.0% | |
| CATCCTTTGGCGTTTCAATC+TGG | - | chr4.2:9086601-9086620 | None:intergenic | 45.0% | |
| CCATGAAAACGGGAACATGA+AGG | - | chr4.2:9082962-9082981 | None:intergenic | 45.0% | |
| CCTGATAACCCTGCCAATTA+CGG | + | chr4.2:9083532-9083551 | MS.gene57388:CDS | 45.0% | |
| CGGACTGAGTATAGGGTTAT+TGG | + | chr4.2:9083400-9083419 | MS.gene57388:CDS | 45.0% | |
| GAATGAGACCGTAATTGGCA+GGG | - | chr4.2:9083543-9083562 | None:intergenic | 45.0% | |
| GAGACTCTTGCCATGAAAAC+GGG | - | chr4.2:9082972-9082991 | None:intergenic | 45.0% | |
| GATGGAACTTCTTAAGGAGG+TGG | + | chr4.2:9083021-9083040 | MS.gene57388:CDS | 45.0% | |
| GCAATTCCAGTGAGAGAACA+GGG | - | chr4.2:9085431-9085450 | None:intergenic | 45.0% | |
| GGAAAAAAGGAAGGAGCAAG+TGG | - | chr4.2:9084428-9084447 | None:intergenic | 45.0% | |
| GGGCAATTACTGGTAGAAGA+AGG | - | chr4.2:9086091-9086110 | None:intergenic | 45.0% | |
| GTTCCAGATTGAAACGCCAA+AGG | + | chr4.2:9086595-9086614 | MS.gene57388:intron | 45.0% | |
| TGAATGAGACCGTAATTGGC+AGG | - | chr4.2:9083544-9083563 | None:intergenic | 45.0% | |
| TGCAATTCCAGTGAGAGAAC+AGG | - | chr4.2:9085432-9085451 | None:intergenic | 45.0% | |
| TGCGTGCAATGCATAAGACA+TGG | - | chr4.2:9085500-9085519 | None:intergenic | 45.0% | |
| TTAAGGAGGTGGAGAAGGAT+AGG | + | chr4.2:9083032-9083051 | MS.gene57388:CDS | 45.0% | |
| TTGGGGGTGGGAAAAATAGA+GGG | + | chr4.2:9084164-9084183 | MS.gene57388:intron | 45.0% | |
| TTTGGGGGTGGGAAAAATAG+AGG | + | chr4.2:9084163-9084182 | MS.gene57388:intron | 45.0% | |
| ! | CAGTGATGATGAGGAAGATC+TGG | + | chr4.2:9083228-9083247 | MS.gene57388:CDS | 45.0% |
| ! | CCTTCATGTTCCCGTTTTCA+TGG | + | chr4.2:9082959-9082978 | MS.gene57388:CDS | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr4.2:9084125-9084144 | MS.gene57388:intron | 45.0% |
| ! | TCCATATCTCTTATGGTGGG+TGG | - | chr4.2:9085211-9085230 | None:intergenic | 45.0% |
| ! | TTTGAGATTGGTGCAGTGGA+AGG | + | chr4.2:9083498-9083517 | MS.gene57388:CDS | 45.0% |
| !! | AGATCACCTTTAGGGTATGC+AGG | + | chr4.2:9082926-9082945 | MS.gene57388:CDS | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr4.2:9084124-9084143 | MS.gene57388:intron | 45.0% |
| !! | GGTACCTTATTGAGAGCATC+TGG | - | chr4.2:9085082-9085101 | None:intergenic | 45.0% |
| !! | TGAGAGCATCTGGAGCTTTA+GGG | - | chr4.2:9085072-9085091 | None:intergenic | 45.0% |
| !! | TTCGTATCGATTCAACTCCG+AGG | - | chr4.2:9083191-9083210 | None:intergenic | 45.0% |
| !! | TTGAGAGCATCTGGAGCTTT+AGG | - | chr4.2:9085073-9085092 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAACATAAAAA+TGG | - | chr4.2:9084796-9084815 | None:intergenic | 5.0% |
| !!! | ATTTTTATGTTTTTTTTTTT+TGG | + | chr4.2:9084795-9084814 | MS.gene57388:intron | 5.0% |
| AGAGAAGTTTGGCCGAACTG+TGG | + | chr4.2:9086625-9086644 | MS.gene57388:CDS | 50.0% | |
| ATAGAGTACATTGGGAGGGG+AGG | - | chr4.2:9084400-9084419 | None:intergenic | 50.0% | |
| ATCGTCAAGCGTATCCGCTT+CGG | - | chr4.2:9083326-9083345 | None:intergenic | 50.0% | |
| CAGTTCGGCCAAACTTCTCT+TGG | - | chr4.2:9086625-9086644 | None:intergenic | 50.0% | |
| CCGTAATTGGCAGGGTTATC+AGG | - | chr4.2:9083535-9083554 | None:intergenic | 50.0% | |
| GCATCTTCATCTCCTTGAGC+AGG | - | chr4.2:9083631-9083650 | None:intergenic | 50.0% | |
| GCATTATGTAGAGCGACACG+AGG | + | chr4.2:9086002-9086021 | MS.gene57388:CDS | 50.0% | |
| GGAGAAGCTTAAGGAGACCT+CGG | + | chr4.2:9083171-9083190 | MS.gene57388:CDS | 50.0% | |
| GTAGTGCCTGCATACCCTAA+AGG | - | chr4.2:9082935-9082954 | None:intergenic | 50.0% | |
| TAGAGTACATTGGGAGGGGA+GGG | - | chr4.2:9084399-9084418 | None:intergenic | 50.0% | |
| TTCCACTGCAACTGGCATGA+AGG | + | chr4.2:9086287-9086306 | MS.gene57388:CDS | 50.0% | |
| ! | AAGGAAGGGTAAGGCTCTAG+AGG | + | chr4.2:9083777-9083796 | MS.gene57388:CDS | 50.0% |
| ! | TACGGTTTGGGCTATTCTGC+CGG | - | chr4.2:9086313-9086332 | None:intergenic | 50.0% |
| !! | ATCTGGAGCTTTAGGGCCTT+TGG | - | chr4.2:9085065-9085084 | None:intergenic | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr4.2:9084123-9084142 | MS.gene57388:intron | 50.0% |
| ACTGCAACTGGCATGAAGGC+CGG | + | chr4.2:9086291-9086310 | MS.gene57388:CDS | 55.0% | |
| AGAACAAGGGGGGCCCAATA+TGG | + | chr4.2:9083567-9083586 | MS.gene57388:CDS | 55.0% | |
| ATGCCAGTTGCAGTGGAAGC+AGG | - | chr4.2:9086285-9086304 | None:intergenic | 55.0% | |
| ATTGATGCCGAGACCGAGGA+TGG | + | chr4.2:9083103-9083122 | MS.gene57388:CDS | 55.0% | |
| CTCGGTCTCGGCATCAATGT+CGG | - | chr4.2:9083101-9083120 | None:intergenic | 55.0% | |
| GGGGCCCAATATGGATACCT+TGG | + | chr4.2:9083576-9083595 | MS.gene57388:CDS | 55.0% | |
| GTATTGGAGGGGGGGTTGAA+GGG | - | chr4.2:9084313-9084332 | None:intergenic | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr4.2:9084129-9084148 | MS.gene57388:intron | 55.0% | |
| TGCTGCTGACAACGACGATG+AGG | + | chr4.2:9083648-9083667 | MS.gene57388:CDS | 55.0% | |
| TGTATTGGAGGGGGGGTTGA+AGG | - | chr4.2:9084314-9084333 | None:intergenic | 55.0% | |
| TGTGACCCCTGTTCTCTCAC+TGG | + | chr4.2:9085422-9085441 | MS.gene57388:intron | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr4.2:9084128-9084147 | MS.gene57388:intron | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | + | chr4.2:9084130-9084149 | MS.gene57388:intron | 55.0% | |
| ! | TGGGACCAAAGGGAGGGTTT+TGG | - | chr4.2:9084449-9084468 | None:intergenic | 55.0% |
| ! | TTGGTGTGAGGATCTGGAGC+TGG | + | chr4.2:9085395-9085414 | MS.gene57388:intron | 55.0% |
| !! | GGGCTTTGAGATTGGTGCAG+TGG | + | chr4.2:9083494-9083513 | MS.gene57388:CDS | 55.0% |
| ACATTGGGAGGGGAGGGCTT+TGG | - | chr4.2:9084393-9084412 | None:intergenic | 60.0% | |
| ATTGGGAGGGGAGGGCTTTG+GGG | - | chr4.2:9084391-9084410 | None:intergenic | 60.0% | |
| CATTGGGAGGGGAGGGCTTT+GGG | - | chr4.2:9084392-9084411 | None:intergenic | 60.0% | |
| CGACATTGATGCCGAGACCG+AGG | + | chr4.2:9083099-9083118 | MS.gene57388:CDS | 60.0% | |
| GAGGGGAAGGAAGGGCTTTG+GGG | + | chr4.2:9084147-9084166 | MS.gene57388:intron | 60.0% | |
| GGAGGGGAAGGAAGGGCTTT+GGG | + | chr4.2:9084146-9084165 | MS.gene57388:intron | 60.0% | |
| GGCCTTCATGCCAGTTGCAG+TGG | - | chr4.2:9086292-9086311 | None:intergenic | 60.0% | |
| TGGCCTGCTTCCACTGCAAC+TGG | + | chr4.2:9086279-9086298 | MS.gene57388:CDS | 60.0% | |
| TTGGAGGGGAGGGGAAGGAA+GGG | + | chr4.2:9084139-9084158 | MS.gene57388:intron | 60.0% | |
| TTTGGAGGGGAGGGGAAGGA+AGG | + | chr4.2:9084138-9084157 | MS.gene57388:intron | 60.0% | |
| ! | AGGGGAAGGAAGGGCTTTGG+GGG | + | chr4.2:9084148-9084167 | MS.gene57388:intron | 60.0% |
| !! | GAAGGAAGGGCTTTGGGGGT+GGG | + | chr4.2:9084152-9084171 | MS.gene57388:intron | 60.0% |
| GGAGTTTGGAGGGGAGGGGA+AGG | + | chr4.2:9084134-9084153 | MS.gene57388:intron | 65.0% | |
| GGGAGGGGAAGGAAGGGCTT+TGG | + | chr4.2:9084145-9084164 | MS.gene57388:intron | 65.0% | |
| ! | TTGGGAGGGGAGGGCTTTGG+GGG | - | chr4.2:9084390-9084409 | None:intergenic | 65.0% |
| !! | GGAAGGAAGGGCTTTGGGGG+TGG | + | chr4.2:9084151-9084170 | MS.gene57388:intron | 65.0% |
| !! | TGGGAGGGGAGGGCTTTGGG+GGG | - | chr4.2:9084389-9084408 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 9082842 | 9086667 | 9082842 | ID=MS.gene57388 |
| chr4.2 | mRNA | 9082842 | 9086667 | 9082842 | ID=MS.gene57388.t1;Parent=MS.gene57388 |
| chr4.2 | exon | 9082842 | 9083870 | 9082842 | ID=MS.gene57388.t1.exon1;Parent=MS.gene57388.t1 |
| chr4.2 | CDS | 9082842 | 9083870 | 9082842 | ID=cds.MS.gene57388.t1;Parent=MS.gene57388.t1 |
| chr4.2 | exon | 9084854 | 9084904 | 9084854 | ID=MS.gene57388.t1.exon2;Parent=MS.gene57388.t1 |
| chr4.2 | CDS | 9084854 | 9084904 | 9084854 | ID=cds.MS.gene57388.t1;Parent=MS.gene57388.t1 |
| chr4.2 | exon | 9084989 | 9085096 | 9084989 | ID=MS.gene57388.t1.exon3;Parent=MS.gene57388.t1 |
| chr4.2 | CDS | 9084989 | 9085096 | 9084989 | ID=cds.MS.gene57388.t1;Parent=MS.gene57388.t1 |
| chr4.2 | exon | 9085976 | 9086071 | 9085976 | ID=MS.gene57388.t1.exon4;Parent=MS.gene57388.t1 |
| chr4.2 | CDS | 9085976 | 9086071 | 9085976 | ID=cds.MS.gene57388.t1;Parent=MS.gene57388.t1 |
| chr4.2 | exon | 9086270 | 9086368 | 9086270 | ID=MS.gene57388.t1.exon5;Parent=MS.gene57388.t1 |
| chr4.2 | CDS | 9086270 | 9086368 | 9086270 | ID=cds.MS.gene57388.t1;Parent=MS.gene57388.t1 |
| chr4.2 | exon | 9086451 | 9086510 | 9086451 | ID=MS.gene57388.t1.exon6;Parent=MS.gene57388.t1 |
| chr4.2 | CDS | 9086451 | 9086510 | 9086451 | ID=cds.MS.gene57388.t1;Parent=MS.gene57388.t1 |
| chr4.2 | exon | 9086602 | 9086667 | 9086602 | ID=MS.gene57388.t1.exon7;Parent=MS.gene57388.t1 |
| chr4.2 | CDS | 9086602 | 9086667 | 9086602 | ID=cds.MS.gene57388.t1;Parent=MS.gene57388.t1 |
| Gene Sequence |
| Protein sequence |
