Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60781.t1 | XP_013469537.1 | 89.8 | 423 | 43 | 0 | 1 | 423 | 19 | 441 | 3.30E-174 | 621.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60781.t1 | Q8VZ14 | 56.6 | 433 | 177 | 2 | 1 | 423 | 17 | 448 | 2.0e-124 | 447.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60781.t1 | A0A072VZT8 | 89.8 | 423 | 43 | 0 | 1 | 423 | 19 | 441 | 2.4e-174 | 621.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene60781 | -0.819532 | 1.11E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene60781 | -0.836971 | 6.84E-57 | -1.69E-46 |
| MS.gene049669 | MS.gene60781 | -0.830903 | 2.26E-55 | -1.69E-46 |
| MS.gene049825 | MS.gene60781 | -0.813492 | 2.49E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene60781 | -0.83167 | 1.46E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene60781 | -0.85678 | 2.55E-62 | -1.69E-46 |
| MS.gene050228 | MS.gene60781 | -0.86418 | 1.46E-64 | -1.69E-46 |
| MS.gene050303 | MS.gene60781 | -0.801201 | 1.01E-48 | -1.69E-46 |
| MS.gene050330 | MS.gene60781 | 0.802603 | 5.19E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene60781 | -0.816161 | 6.38E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene60781 | 0.868762 | 5.13E-66 | -1.69E-46 |
| MS.gene050642 | MS.gene60781 | -0.815639 | 8.34E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene60781 | -0.812238 | 4.69E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene60781 | -0.814949 | 1.19E-51 | -1.69E-46 |
| MS.gene050780 | MS.gene60781 | -0.830821 | 2.37E-55 | -1.69E-46 |
| MS.gene051247 | MS.gene60781 | -0.800039 | 1.74E-48 | -1.69E-46 |
| MS.gene051492 | MS.gene60781 | -0.804618 | 1.98E-49 | -1.69E-46 |
| MS.gene052048 | MS.gene60781 | 0.80003 | 1.75E-48 | -1.69E-46 |
| MS.gene052176 | MS.gene60781 | -0.860277 | 2.31E-63 | -1.69E-46 |
| MS.gene052302 | MS.gene60781 | -0.819525 | 1.11E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene60781 | 0.812139 | 4.93E-51 | -1.69E-46 |
| MS.gene052358 | MS.gene60781 | 0.842492 | 2.50E-58 | -1.69E-46 |
| MS.gene052376 | MS.gene60781 | -0.834937 | 2.24E-56 | -1.69E-46 |
| MS.gene052389 | MS.gene60781 | -0.80661 | 7.57E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene60781 | -0.802424 | 5.65E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene60781 | -0.828644 | 8.02E-55 | -1.69E-46 |
| MS.gene053054 | MS.gene60781 | 0.826802 | 2.22E-54 | -1.69E-46 |
| MS.gene053340 | MS.gene60781 | -0.831699 | 1.44E-55 | -1.69E-46 |
| MS.gene05410 | MS.gene60781 | -0.800327 | 1.52E-48 | -1.69E-46 |
| MS.gene05414 | MS.gene60781 | -0.808157 | 3.55E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene60781 | -0.806845 | 6.75E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene60781 | 0.823014 | 1.74E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene60781 | -0.809367 | 1.96E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene60781 | -0.811415 | 7.08E-51 | -1.69E-46 |
| MS.gene05468 | MS.gene60781 | -0.820646 | 6.15E-53 | -1.69E-46 |
| MS.gene054942 | MS.gene60781 | -0.836829 | 7.44E-57 | -1.69E-46 |
| MS.gene055603 | MS.gene60781 | -0.813163 | 2.94E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene60781 | -0.805821 | 1.11E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene60781 | 0.81886 | 1.57E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene60781 | -0.827193 | 1.79E-54 | -1.69E-46 |
| MS.gene056403 | MS.gene60781 | -0.82704 | 1.95E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene60781 | -0.825613 | 4.26E-54 | -1.69E-46 |
| MS.gene056552 | MS.gene60781 | -0.806298 | 8.80E-50 | -1.69E-46 |
| MS.gene05659 | MS.gene60781 | -0.811245 | 7.71E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene60781 | -0.805054 | 1.61E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene60781 | -0.831525 | 1.59E-55 | -1.69E-46 |
| MS.gene057967 | MS.gene60781 | -0.807058 | 6.08E-50 | -1.69E-46 |
| MS.gene058908 | MS.gene60781 | -0.805959 | 1.04E-49 | -1.69E-46 |
| MS.gene058911 | MS.gene60781 | -0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene60781 | -0.822649 | 2.12E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene60781 | -0.800899 | 1.16E-48 | -1.69E-46 |
| MS.gene060572 | MS.gene60781 | -0.827703 | 1.35E-54 | -1.69E-46 |
| MS.gene060879 | MS.gene60781 | -0.805717 | 1.17E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene60781 | 0.873661 | 1.24E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60781.t1 | MTR_1g096780 | 98.345 | 423 | 7 | 0 | 1 | 423 | 19 | 441 | 0.0 | 845 |
| MS.gene60781.t1 | MTR_8g073120 | 31.783 | 129 | 69 | 7 | 152 | 269 | 36 | 156 | 2.47e-12 | 66.2 |
| MS.gene60781.t1 | MTR_2g035800 | 30.233 | 129 | 78 | 5 | 143 | 265 | 28 | 150 | 2.63e-12 | 65.1 |
| MS.gene60781.t1 | MTR_1g047180 | 37.179 | 78 | 44 | 2 | 182 | 259 | 652 | 724 | 4.56e-12 | 68.6 |
| MS.gene60781.t1 | MTR_5g026260 | 33.750 | 80 | 51 | 1 | 195 | 274 | 483 | 560 | 6.77e-12 | 67.8 |
| MS.gene60781.t1 | MTR_3g067995 | 52.830 | 53 | 24 | 1 | 216 | 268 | 212 | 263 | 1.60e-11 | 65.1 |
| MS.gene60781.t1 | MTR_4g064550 | 56.000 | 50 | 21 | 1 | 210 | 259 | 208 | 256 | 1.80e-11 | 64.7 |
| MS.gene60781.t1 | MTR_3g099650 | 31.148 | 122 | 71 | 6 | 149 | 259 | 59 | 178 | 1.90e-11 | 65.9 |
| MS.gene60781.t1 | MTR_4g064560 | 56.000 | 50 | 21 | 1 | 210 | 259 | 202 | 250 | 3.90e-11 | 63.9 |
| MS.gene60781.t1 | MTR_7g116180 | 32.374 | 139 | 71 | 6 | 142 | 259 | 2 | 138 | 7.07e-11 | 61.2 |
| MS.gene60781.t1 | MTR_7g116220 | 31.111 | 135 | 64 | 5 | 153 | 259 | 8 | 141 | 7.84e-11 | 61.2 |
| MS.gene60781.t1 | MTR_6g007680 | 35.345 | 116 | 62 | 6 | 147 | 259 | 3 | 108 | 9.77e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60781.t1 | AT1G71980 | 66.513 | 433 | 134 | 3 | 1 | 423 | 17 | 448 | 0.0 | 526 |
| MS.gene60781.t1 | AT4G09560 | 51.474 | 441 | 181 | 11 | 2 | 421 | 18 | 446 | 1.82e-126 | 373 |
| MS.gene60781.t1 | AT1G35630 | 56.794 | 287 | 124 | 0 | 1 | 287 | 17 | 303 | 4.82e-117 | 344 |
| MS.gene60781.t1 | AT1G22670 | 47.917 | 432 | 182 | 11 | 3 | 422 | 22 | 422 | 2.87e-114 | 341 |
| MS.gene60781.t1 | AT1G35625 | 56.463 | 294 | 114 | 2 | 1 | 287 | 17 | 303 | 5.75e-114 | 337 |
| MS.gene60781.t1 | AT5G66160 | 44.361 | 266 | 138 | 5 | 1 | 264 | 22 | 279 | 2.71e-66 | 214 |
| MS.gene60781.t1 | AT5G66160 | 44.361 | 266 | 138 | 5 | 1 | 264 | 22 | 279 | 6.55e-66 | 213 |
| MS.gene60781.t1 | AT4G09120 | 29.545 | 220 | 139 | 7 | 144 | 356 | 47 | 257 | 9.37e-14 | 72.4 |
| MS.gene60781.t1 | AT5G07225 | 38.356 | 73 | 40 | 2 | 190 | 262 | 165 | 232 | 2.64e-12 | 66.6 |
| MS.gene60781.t1 | AT1G33480 | 32.432 | 148 | 86 | 7 | 190 | 326 | 75 | 219 | 1.16e-11 | 65.1 |
| MS.gene60781.t1 | AT3G18773 | 27.742 | 155 | 98 | 4 | 115 | 259 | 22 | 172 | 1.41e-11 | 64.3 |
| MS.gene60781.t1 | AT3G55530 | 54.000 | 50 | 22 | 1 | 216 | 265 | 210 | 258 | 1.42e-11 | 65.1 |
| MS.gene60781.t1 | AT1G20823 | 38.889 | 72 | 42 | 2 | 190 | 260 | 84 | 154 | 4.42e-11 | 62.4 |
| MS.gene60781.t1 | AT4G09100 | 37.662 | 77 | 44 | 3 | 186 | 259 | 52 | 127 | 5.29e-11 | 60.5 |
| MS.gene60781.t1 | AT3G10910 | 40.278 | 72 | 40 | 3 | 190 | 260 | 88 | 157 | 5.39e-11 | 61.6 |
Find 101 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTGCCTGTGTGGATTCT+TGG | 0.196122 | 1.2:+71884195 | MS.gene60781:CDS |
| TCATCTTCAGCAATACAAAT+TGG | 0.282025 | 1.2:+71884371 | MS.gene60781:CDS |
| CTTGCATCACGCTTGCAAAC+TGG | 0.302893 | 1.2:-71884242 | None:intergenic |
| TGTGTGAAGCTAGAGATCTT+TGG | 0.332608 | 1.2:-71884526 | None:intergenic |
| GATGATATTGAAGCTAATTT+CGG | 0.338035 | 1.2:+71881390 | MS.gene60781:CDS |
| CAGAGCTACGGCTGAAGCTT+AGG | 0.338278 | 1.2:-71884484 | None:intergenic |
| GCTCCATCGGTCAAAGGTTC+TGG | 0.338386 | 1.2:+71882172 | MS.gene60781:intron |
| TCTCATGTTCGTGAATTTCA+TGG | 0.340632 | 1.2:+71883243 | MS.gene60781:CDS |
| AAGAGGCTCTGCCAAGAATA+AGG | 0.342445 | 1.2:-71882206 | None:intergenic |
| TGCGTCTGCCAACTCCCTTC+CGG | 0.343050 | 1.2:+71884718 | MS.gene60781:CDS |
| TGGATTCTTGGCTTACTTCA+TGG | 0.348035 | 1.2:+71884207 | MS.gene60781:CDS |
| GCTGCTAAGGTTGTGTTGAT+TGG | 0.367855 | 1.2:+71881345 | MS.gene60781:CDS |
| GTATTTGTTTCAAAAGCTTC+GGG | 0.371506 | 1.2:+71883036 | MS.gene60781:CDS |
| GGGGTGTAGCTTTGAGGAAA+AGG | 0.371973 | 1.2:+71882306 | MS.gene60781:CDS |
| GGTATTTGTTTCAAAAGCTT+CGG | 0.372526 | 1.2:+71883035 | MS.gene60781:CDS |
| CTTAGAGAAGGCTGATTGTA+AGG | 0.389822 | 1.2:-71884440 | None:intergenic |
| GTTAGCTATGTCTGCAGTGC+TGG | 0.390348 | 1.2:+71883164 | MS.gene60781:CDS |
| CTCCAGCGCAATAATCTTCA+AGG | 0.399738 | 1.2:-71883356 | None:intergenic |
| CCACTTGTTTCTTCGTCCGC+AGG | 0.412166 | 1.2:+71883187 | MS.gene60781:CDS |
| GCACTGCAGACATAGCTAAC+AGG | 0.412818 | 1.2:-71883161 | None:intergenic |
| GAGTGGATGCTGCTGATGAC+TGG | 0.415213 | 1.2:-71884660 | None:intergenic |
| AGAATACGGAGCCTTATTCT+TGG | 0.417360 | 1.2:+71882195 | MS.gene60781:CDS |
| CTGCTAAGGTTGTGTTGATT+GGG | 0.421036 | 1.2:+71881346 | MS.gene60781:CDS |
| TTGCATCACGCTTGCAAACT+GGG | 0.424562 | 1.2:-71884241 | None:intergenic |
| GCGTGATGCAAGAACGGGTC+TGG | 0.427986 | 1.2:+71884253 | MS.gene60781:CDS |
| GCCGTAGCTCTGTGGATCTT+AGG | 0.428506 | 1.2:+71884495 | MS.gene60781:CDS |
| GTGTGCTATGGCGGCTGCTA+AGG | 0.439742 | 1.2:+71881332 | None:intergenic |
| GTGTGAAGCTAGAGATCTTT+GGG | 0.442142 | 1.2:-71884525 | None:intergenic |
| AAGAGGATGCCGCAGATGAC+GGG | 0.460435 | 1.2:-71884319 | None:intergenic |
| CTTACAATCAGCCTTCTCTA+AGG | 0.462445 | 1.2:+71884441 | MS.gene60781:CDS |
| TGCCTTGAAGATTATTGCGC+TGG | 0.467679 | 1.2:+71883354 | MS.gene60781:CDS |
| AGAGCTACGGCTGAAGCTTA+GGG | 0.468094 | 1.2:-71884483 | None:intergenic |
| AATTGAACAATTCAACATTC+CGG | 0.470205 | 1.2:-71884737 | None:intergenic |
| ACGCTTGCAAACTGGGCAAA+AGG | 0.471145 | 1.2:-71884234 | None:intergenic |
| AAACTTACTGAAGCATTGCT+TGG | 0.472660 | 1.2:-71884626 | None:intergenic |
| TGCAAGCGTGATGCAAGAAC+GGG | 0.474555 | 1.2:+71884248 | MS.gene60781:CDS |
| TTGAGGCTGACTCACTATAT+CGG | 0.477494 | 1.2:-71884682 | None:intergenic |
| GTCAAAGGTTCTGGAGAATA+CGG | 0.481854 | 1.2:+71882181 | MS.gene60781:CDS |
| ACTGAAGCATTGCTTGGACT+TGG | 0.496274 | 1.2:-71884620 | None:intergenic |
| CGAACATGAGAAGAAGTTTG+AGG | 0.503157 | 1.2:-71883231 | None:intergenic |
| GTAGCTTTGAGGAAAAGGTT+AGG | 0.503932 | 1.2:+71882311 | MS.gene60781:CDS |
| ACGGCTGAAGCTTAGGGAGG+GGG | 0.504414 | 1.2:-71884477 | None:intergenic |
| TCAACATTCCGGAAGGGAGT+TGG | 0.506625 | 1.2:-71884726 | None:intergenic |
| CCTCTAACCATCAAAACAAA+AGG | 0.508806 | 1.2:-71882283 | None:intergenic |
| GTTAGGATTGCACAAAGTGC+TGG | 0.514958 | 1.2:+71882328 | MS.gene60781:CDS |
| ATGAATTCACCGCGTTCCAT+CGG | 0.515963 | 1.2:+71884548 | MS.gene60781:CDS |
| AATGCTTCAGTAAGTTTCCT+CGG | 0.522483 | 1.2:+71884632 | MS.gene60781:CDS |
| AGGGAGTTGGCAGACGCAAA+TGG | 0.523123 | 1.2:-71884713 | None:intergenic |
| CAATGAAGATGGTGGCATCC+TGG | 0.526957 | 1.2:+71882375 | MS.gene60781:CDS |
| CCTCTTTCGTGTCTTCTATG+AGG | 0.529305 | 1.2:+71884336 | MS.gene60781:CDS |
| AAAGAGGATGCCGCAGATGA+CGG | 0.530793 | 1.2:-71884320 | None:intergenic |
| GGAAGACTTACTGTGACAGC+AGG | 0.533020 | 1.2:-71883397 | None:intergenic |
| TTGCAAGCGTGATGCAAGAA+CGG | 0.539276 | 1.2:+71884247 | MS.gene60781:CDS |
| TACGGCTGAAGCTTAGGGAG+GGG | 0.539291 | 1.2:-71884478 | None:intergenic |
| ATACACTGGTTTAACTAATG+TGG | 0.540905 | 1.2:+71883074 | MS.gene60781:CDS |
| TCCTAAGATCCACAGAGCTA+CGG | 0.545254 | 1.2:-71884496 | None:intergenic |
| AAACTCAGCATGGTCTATCA+TGG | 0.545970 | 1.2:+71883122 | MS.gene60781:CDS |
| ATTGCGCTGGAGAGAAACTC+AGG | 0.554269 | 1.2:+71883367 | MS.gene60781:CDS |
| TTAGAGAAGGCTGATTGTAA+GGG | 0.554606 | 1.2:-71884439 | None:intergenic |
| TCAGTGGCAGGAAATTCTGC+TGG | 0.554718 | 1.2:+71882997 | MS.gene60781:intron |
| ATTTCAGCTCCATCGGTCAA+AGG | 0.556014 | 1.2:+71882166 | MS.gene60781:intron |
| GTCATCAACCCCGTCATCTG+CGG | 0.562171 | 1.2:+71884310 | MS.gene60781:CDS |
| GAGTTAAGAGATGATAAAGA+TGG | 0.565530 | 1.2:-71884575 | None:intergenic |
| GAACAATTCAACATTCCGGA+AGG | 0.572328 | 1.2:-71884733 | None:intergenic |
| CACTGCAGACATAGCTAACA+GGG | 0.573295 | 1.2:-71883160 | None:intergenic |
| TCTCCAGAACCTTTGACCGA+TGG | 0.573751 | 1.2:-71882175 | None:intergenic |
| GCAATAATCTTCAAGGCAGA+TGG | 0.580122 | 1.2:-71883349 | None:intergenic |
| TGATAAAGATGGATAACCGA+TGG | 0.589393 | 1.2:-71884564 | None:intergenic |
| CCTCATAGAAGACACGAAAG+AGG | 0.590401 | 1.2:-71884336 | None:intergenic |
| ATTGTCTATGACAATGAAGA+TGG | 0.598093 | 1.2:+71882364 | MS.gene60781:CDS |
| AAGCTTCAGCCGTAGCTCTG+TGG | 0.606819 | 1.2:+71884487 | MS.gene60781:CDS |
| GGTTGATGACAGCAGAGGTG+TGG | 0.607896 | 1.2:-71884297 | None:intergenic |
| GGCATCGCATACGAAGAGAA+AGG | 0.608323 | 1.2:+71883208 | MS.gene60781:CDS |
| GTTTAACTAATGTGGAAACA+TGG | 0.611755 | 1.2:+71883082 | MS.gene60781:CDS |
| AACAATTCAACATTCCGGAA+GGG | 0.612915 | 1.2:-71884732 | None:intergenic |
| AAGGGGTACTTGCTAAAGAG+TGG | 0.614377 | 1.2:-71884421 | None:intergenic |
| AGAGGATGCCGCAGATGACG+GGG | 0.616002 | 1.2:-71884318 | None:intergenic |
| GCTACGGCTGAAGCTTAGGG+AGG | 0.617291 | 1.2:-71884480 | None:intergenic |
| AGAGTTTCATGCTGCCTGTG+TGG | 0.623183 | 1.2:+71884187 | MS.gene60781:intron |
| AGTTCTGTACATGCATCAAG+AGG | 0.627860 | 1.2:-71882223 | None:intergenic |
| CTACGGCTGAAGCTTAGGGA+GGG | 0.629238 | 1.2:-71884479 | None:intergenic |
| TGACGGTAGGACCTTAGAGA+AGG | 0.630058 | 1.2:-71884452 | None:intergenic |
| CTTGGACTTGGAATGTGTGA+AGG | 0.631090 | 1.2:-71884608 | None:intergenic |
| GAAATACTAAAGAAATACAC+TGG | 0.632691 | 1.2:+71883060 | MS.gene60781:CDS |
| TGCTGGTATAAGAATACATG+CGG | 0.638072 | 1.2:+71883014 | MS.gene60781:CDS |
| TAGAGAAGGCTGATTGTAAG+GGG | 0.638407 | 1.2:-71884438 | None:intergenic |
| GGTGTGGATTCTGAAGGTGG+TGG | 0.642431 | 1.2:-71884281 | None:intergenic |
| CTCTTCGTATGCGATGCCTG+CGG | 0.646212 | 1.2:-71883203 | None:intergenic |
| ATTGGTCATTACTTGCAACC+AGG | 0.654527 | 1.2:-71882393 | None:intergenic |
| GATGGATAACCGATGGAACG+CGG | 0.656285 | 1.2:-71884557 | None:intergenic |
| CGCAAATGGTGAGAAGCTTG+AGG | 0.656667 | 1.2:-71884699 | None:intergenic |
| AGAGGTGTGGATTCTGAAGG+TGG | 0.668803 | 1.2:-71884284 | None:intergenic |
| GAAGACTTACTGTGACAGCA+GGG | 0.683669 | 1.2:-71883396 | None:intergenic |
| GACGGGGTTGATGACAGCAG+AGG | 0.693540 | 1.2:-71884302 | None:intergenic |
| AGCAGAGGTGTGGATTCTGA+AGG | 0.694144 | 1.2:-71884287 | None:intergenic |
| CCTGCGGACGAAGAAACAAG+TGG | 0.703165 | 1.2:-71883187 | None:intergenic |
| GTCTATGACAATGAAGATGG+TGG | 0.704480 | 1.2:+71882367 | MS.gene60781:CDS |
| GCTGACTCACTATATCGGAG+TGG | 0.710724 | 1.2:-71884677 | None:intergenic |
| GCTGATGACTGGATGAACCG+AGG | 0.715695 | 1.2:-71884649 | None:intergenic |
| TTACGAGAAACAGATTGCGA+CGG | 0.739626 | 1.2:-71884398 | None:intergenic |
| AGTAAGCCAAGAATCCACAC+AGG | 0.748693 | 1.2:-71884201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATAATCAAATGATTT+TGG | - | chr1.2:71883811-71883830 | None:intergenic | 10.0% |
| !! | GATAAATTATAATTTCTGAT+TGG | + | chr1.2:71882961-71882980 | MS.gene60781:intron | 15.0% |
| !! | TTTAATCACAAAAATAAATC+CGG | - | chr1.2:71882000-71882019 | None:intergenic | 15.0% |
| !!! | TTGTTATGTCTTTTTTTTTA+TGG | - | chr1.2:71882643-71882662 | None:intergenic | 15.0% |
| !!! | TTTTTATCCTATATTGTATT+TGG | - | chr1.2:71882819-71882838 | None:intergenic | 15.0% |
| !! | AAATTATAATTTCTGATTGG+TGG | + | chr1.2:71882964-71882983 | MS.gene60781:intron | 20.0% |
| !! | AATACACTGAATTTGAAAAA+GGG | - | chr1.2:71883438-71883457 | None:intergenic | 20.0% |
| !! | ACTTATATTAGGTAACATTA+TGG | + | chr1.2:71881746-71881765 | MS.gene60781:intron | 20.0% |
| !! | CTTTCTTTATTAGATAGAAT+AGG | - | chr1.2:71881557-71881576 | None:intergenic | 20.0% |
| !! | GCAATAATGTAAAATCTATA+AGG | + | chr1.2:71882850-71882869 | MS.gene60781:intron | 20.0% |
| !! | TAGGATAAAAAATTGAAACT+TGG | + | chr1.2:71882828-71882847 | MS.gene60781:intron | 20.0% |
| !! | TGATAATCCAAATACAATAT+AGG | + | chr1.2:71882809-71882828 | MS.gene60781:intron | 20.0% |
| !! | TTCATTATTACAATATCTCT+TGG | + | chr1.2:71882717-71882736 | MS.gene60781:intron | 20.0% |
| !! | TTTGAAAAAGGGAAAAAAAT+TGG | - | chr1.2:71883427-71883446 | None:intergenic | 20.0% |
| !!! | AAATAATTTCTATTCTGAGA+CGG | + | chr1.2:71883712-71883731 | MS.gene60781:intron | 20.0% |
| !!! | ATTAAATTTGTGCTTTGTTT+GGG | + | chr1.2:71882014-71882033 | MS.gene60781:intron | 20.0% |
| !!! | TGAAATTATTTTACAGAAGT+TGG | + | chr1.2:71882686-71882705 | MS.gene60781:intron | 20.0% |
| !!! | TGAATAGGATTTTGATTTTA+TGG | + | chr1.2:71881470-71881489 | MS.gene60781:intron | 20.0% |
| !!! | TTCTAATTCAATTTTTTTCC+TGG | + | chr1.2:71884152-71884171 | MS.gene60781:intron | 20.0% |
| ! | AAAAAAGAAAGAGAGAGAAA+AGG | + | chr1.2:71881577-71881596 | MS.gene60781:intron | 25.0% |
| ! | AAAAGGGAAAAAAATTGGAA+TGG | - | chr1.2:71883422-71883441 | None:intergenic | 25.0% |
| ! | AAAGGGAAAAAAATTGGAAT+GGG | - | chr1.2:71883421-71883440 | None:intergenic | 25.0% |
| ! | AATTTATCAGAATATGACTC+AGG | - | chr1.2:71882949-71882968 | None:intergenic | 25.0% |
| ! | ACAAAGAAAAACAAGAAACT+AGG | - | chr1.2:71884008-71884027 | None:intergenic | 25.0% |
| ! | ATGTACTAGTAACTTCAAAA+CGG | - | chr1.2:71884098-71884117 | None:intergenic | 25.0% |
| ! | ATGTTGCTACATAAAACAAT+TGG | - | chr1.2:71882414-71882433 | None:intergenic | 25.0% |
| ! | CAATACACTGAATTTGAAAA+AGG | - | chr1.2:71883439-71883458 | None:intergenic | 25.0% |
| ! | CACAGTTCAAACAAATTAAA+TGG | - | chr1.2:71883888-71883907 | None:intergenic | 25.0% |
| ! | GAAATACTAAAGAAATACAC+TGG | + | chr1.2:71883060-71883079 | MS.gene60781:CDS | 25.0% |
| ! | GATGATATTGAAGCTAATTT+CGG | + | chr1.2:71881390-71881409 | MS.gene60781:CDS | 25.0% |
| ! | TACTGTGTGCAATTTATTAT+TGG | + | chr1.2:71883491-71883510 | MS.gene60781:intron | 25.0% |
| ! | TATAAATGCCAGTTATTATC+TGG | + | chr1.2:71883583-71883602 | MS.gene60781:intron | 25.0% |
| ! | TATAGTATTGCATTTGATTG+TGG | + | chr1.2:71882093-71882112 | MS.gene60781:intron | 25.0% |
| ! | TATATTCCGGAATTTATCTT+AGG | - | chr1.2:71881955-71881974 | None:intergenic | 25.0% |
| ! | TGTGCAATTTATTATTGGAT+TGG | + | chr1.2:71883496-71883515 | MS.gene60781:intron | 25.0% |
| ! | TTATTACAATATCTCTTGGA+AGG | + | chr1.2:71882721-71882740 | MS.gene60781:intron | 25.0% |
| ! | TTGGTTGTTGTACTTATATT+AGG | + | chr1.2:71881735-71881754 | MS.gene60781:intron | 25.0% |
| ! | TTTATGGAATTTGTGACTAT+TGG | + | chr1.2:71881486-71881505 | MS.gene60781:intron | 25.0% |
| ! | TTTCAAATTCAGTGTATTGT+TGG | + | chr1.2:71883440-71883459 | MS.gene60781:intron | 25.0% |
| !! | AAGTATATGCTTTAAGTCTA+TGG | - | chr1.2:71881926-71881945 | None:intergenic | 25.0% |
| !! | GATTAAATTTGTGCTTTGTT+TGG | + | chr1.2:71882013-71882032 | MS.gene60781:intron | 25.0% |
| !! | TCTAGAATATAACTATAGAG+AGG | - | chr1.2:71881860-71881879 | None:intergenic | 25.0% |
| !! | TCTCTTTTTGTTAACATGAA+TGG | + | chr1.2:71882137-71882156 | MS.gene60781:intron | 25.0% |
| !!! | CATTTAATTTGTTTGAACTG+TGG | + | chr1.2:71883886-71883905 | MS.gene60781:intron | 25.0% |
| !!! | TTAAATTTGTGCTTTGTTTG+GGG | + | chr1.2:71882015-71882034 | MS.gene60781:intron | 25.0% |
| !!! | TTTGATTTTTACTTCTGCTT+TGG | + | chr1.2:71883299-71883318 | MS.gene60781:CDS | 25.0% |
| AAAAAATGCTGACCAAAAAC+AGG | + | chr1.2:71883833-71883852 | MS.gene60781:intron | 30.0% | |
| AAAAGGATTTGAATTGATGC+TGG | + | chr1.2:71881594-71881613 | MS.gene60781:intron | 30.0% | |
| AAAGTTAACACCAATGTGTA+AGG | - | chr1.2:71883552-71883571 | None:intergenic | 30.0% | |
| AATATGTCAACAAACAGTTG+AGG | + | chr1.2:71881617-71881636 | MS.gene60781:intron | 30.0% | |
| AATTTGTGTTTCCTTTGTGA+TGG | + | chr1.2:71881879-71881898 | MS.gene60781:intron | 30.0% | |
| ACAATAAAACCAAAGAGACA+TGG | - | chr1.2:71883666-71883685 | None:intergenic | 30.0% | |
| ACTATTGGAAATTCTTACAC+TGG | + | chr1.2:71881501-71881520 | MS.gene60781:intron | 30.0% | |
| AGAAAAACAAGAAACTAGGA+AGG | - | chr1.2:71884004-71884023 | None:intergenic | 30.0% | |
| ATAAATCCGGAATTTCTCTT+AGG | - | chr1.2:71881987-71882006 | None:intergenic | 30.0% | |
| ATTGTCTATGACAATGAAGA+TGG | + | chr1.2:71882364-71882383 | MS.gene60781:CDS | 30.0% | |
| GAAATCAATCCAACAAGAAA+TGG | - | chr1.2:71882886-71882905 | None:intergenic | 30.0% | |
| GACTAAACTGATGATATACT+GGG | - | chr1.2:71883953-71883972 | None:intergenic | 30.0% | |
| GAGTTAAGAGATGATAAAGA+TGG | - | chr1.2:71884578-71884597 | None:intergenic | 30.0% | |
| GCAGAAGTAAAAATCAAACT+TGG | - | chr1.2:71883297-71883316 | None:intergenic | 30.0% | |
| GGTATTTGTTTCAAAAGCTT+CGG | + | chr1.2:71883035-71883054 | MS.gene60781:CDS | 30.0% | |
| GTATTTGTTTCAAAAGCTTC+GGG | + | chr1.2:71883036-71883055 | MS.gene60781:CDS | 30.0% | |
| GTTTAACTAATGTGGAAACA+TGG | + | chr1.2:71883082-71883101 | MS.gene60781:CDS | 30.0% | |
| TCATCTTCAGCAATACAAAT+TGG | + | chr1.2:71884371-71884390 | MS.gene60781:CDS | 30.0% | |
| TCATGTTAACAAAAAGAGAC+AGG | - | chr1.2:71882136-71882155 | None:intergenic | 30.0% | |
| TGTACTAGTAACTTCAAAAC+GGG | - | chr1.2:71884097-71884116 | None:intergenic | 30.0% | |
| ! | GCAAAAACGTTTCTAGATAA+TGG | - | chr1.2:71882567-71882586 | None:intergenic | 30.0% |
| ! | TGATTTCAGCTAGTTTGAAT+AGG | + | chr1.2:71881455-71881474 | MS.gene60781:intron | 30.0% |
| !! | ATACACTGGTTTAACTAATG+TGG | + | chr1.2:71883074-71883093 | MS.gene60781:CDS | 30.0% |
| !!! | CTTTTGTTTTGATGGTTAGA+GGG | + | chr1.2:71882284-71882303 | MS.gene60781:CDS | 30.0% |
| !!! | TAGTTCACCTTTTGTTTTGA+TGG | + | chr1.2:71882276-71882295 | MS.gene60781:CDS | 30.0% |
| !!! | TGGTGGTTTTTTAATTTCAG+TGG | + | chr1.2:71882981-71883000 | MS.gene60781:intron | 30.0% |
| !!! | TTGTTTTTTGCCTTCGAATT+TGG | + | chr1.2:71881419-71881438 | MS.gene60781:intron | 30.0% |
| !!! | TTTTGTTTTGATGGTTAGAG+GGG | + | chr1.2:71882285-71882304 | MS.gene60781:CDS | 30.0% |
| AAATGCTAATGTGAGTTGTC+TGG | + | chr1.2:71882495-71882514 | MS.gene60781:intron | 35.0% | |
| AACACAGAATCCAAATTCGA+AGG | - | chr1.2:71881432-71881451 | None:intergenic | 35.0% | |
| AATGCTTCAGTAAGTTTCCT+CGG | + | chr1.2:71884632-71884651 | MS.gene60781:CDS | 35.0% | |
| ATGAGAATGTCTTTGTCATG+AGG | + | chr1.2:71883609-71883628 | MS.gene60781:intron | 35.0% | |
| CAACAAGAAATGGTCATCAT+TGG | - | chr1.2:71882876-71882895 | None:intergenic | 35.0% | |
| CAATGATGACCATTTCTTGT+TGG | + | chr1.2:71882874-71882893 | MS.gene60781:intron | 35.0% | |
| CATATGAAAGCCTTACACAT+TGG | + | chr1.2:71883539-71883558 | MS.gene60781:intron | 35.0% | |
| CCTCTAACCATCAAAACAAA+AGG | - | chr1.2:71882286-71882305 | None:intergenic | 35.0% | |
| CTCATTTGCCAGATAATAAC+TGG | - | chr1.2:71883594-71883613 | None:intergenic | 35.0% | |
| CTCTCGTATTGTTAAAGACA+AGG | - | chr1.2:71883923-71883942 | None:intergenic | 35.0% | |
| CTCTTGGAAGGAAAATATCA+GGG | + | chr1.2:71882733-71882752 | MS.gene60781:intron | 35.0% | |
| GAAACAACATATCAATAGCC+AGG | - | chr1.2:71884052-71884071 | None:intergenic | 35.0% | |
| GCCATTCCTAAGATAAATTC+CGG | + | chr1.2:71881946-71881965 | MS.gene60781:intron | 35.0% | |
| GCTTTCATATGTCTCAACAA+AGG | - | chr1.2:71883530-71883549 | None:intergenic | 35.0% | |
| GGACTAAACTGATGATATAC+TGG | - | chr1.2:71883954-71883973 | None:intergenic | 35.0% | |
| GTGCATATTGAACAACATTC+TGG | + | chr1.2:71882773-71882792 | MS.gene60781:intron | 35.0% | |
| TAGGAATGGCAAGTATATTC+CGG | - | chr1.2:71881968-71881987 | None:intergenic | 35.0% | |
| TCCGGAATTTATCTTAGGAA+TGG | - | chr1.2:71881950-71881969 | None:intergenic | 35.0% | |
| TCTCATGTTCGTGAATTTCA+TGG | + | chr1.2:71883243-71883262 | MS.gene60781:CDS | 35.0% | |
| TCTCTTGGAAGGAAAATATC+AGG | + | chr1.2:71882732-71882751 | MS.gene60781:intron | 35.0% | |
| TGATAAAGATGGATAACCGA+TGG | - | chr1.2:71884567-71884586 | None:intergenic | 35.0% | |
| TGCTGGTATAAGAATACATG+CGG | + | chr1.2:71883014-71883033 | MS.gene60781:CDS | 35.0% | |
| TTAGAGAAGGCTGATTGTAA+GGG | - | chr1.2:71884442-71884461 | None:intergenic | 35.0% | |
| TTCATCAGGGATAAAGGTAA+TGG | - | chr1.2:71883975-71883994 | None:intergenic | 35.0% | |
| ! | CATGCTGAGTTTTCAAAAGT+TGG | - | chr1.2:71883114-71883133 | None:intergenic | 35.0% |
| !! | AAACTTACTGAAGCATTGCT+TGG | - | chr1.2:71884629-71884648 | None:intergenic | 35.0% |
| !! | AAAGTTTTATCCCGGTAAGT+GGG | - | chr1.2:71881717-71881736 | None:intergenic | 35.0% |
| !! | CAACAACCAAAGTTTTATCC+CGG | - | chr1.2:71881725-71881744 | None:intergenic | 35.0% |
| !! | CAACTTTTGAAAACTCAGCA+TGG | + | chr1.2:71883112-71883131 | MS.gene60781:CDS | 35.0% |
| !! | TCTTACACTGGTAGTGTTTT+TGG | + | chr1.2:71881513-71881532 | MS.gene60781:intron | 35.0% |
| !!! | CCTTTTGTTTTGATGGTTAG+AGG | + | chr1.2:71882283-71882302 | MS.gene60781:CDS | 35.0% |
| !!! | GGTTTTTTAATTTCAGTGGC+AGG | + | chr1.2:71882985-71883004 | MS.gene60781:intron | 35.0% |
| !!! | TTTGTTTTGATGGTTAGAGG+GGG | + | chr1.2:71882286-71882305 | MS.gene60781:CDS | 35.0% |
| AAACTCAGCATGGTCTATCA+TGG | + | chr1.2:71883122-71883141 | MS.gene60781:CDS | 40.0% | |
| AAATGGAACACGAGTGTACT+AGG | - | chr1.2:71883871-71883890 | None:intergenic | 40.0% | |
| AACAACATTCTGGACAAGCT+TGG | + | chr1.2:71882783-71882802 | MS.gene60781:intron | 40.0% | |
| AGTTCTGTACATGCATCAAG+AGG | - | chr1.2:71882226-71882245 | None:intergenic | 40.0% | |
| ATTGGTCATTACTTGCAACC+AGG | - | chr1.2:71882396-71882415 | None:intergenic | 40.0% | |
| CACTTACCGGGATAAAACTT+TGG | + | chr1.2:71881716-71881735 | MS.gene60781:intron | 40.0% | |
| CCTCATTTCATCAGGGATAA+AGG | - | chr1.2:71883981-71884000 | None:intergenic | 40.0% | |
| CCTTTATCCCTGATGAAATG+AGG | + | chr1.2:71883978-71883997 | MS.gene60781:intron | 40.0% | |
| CGAACATGAGAAGAAGTTTG+AGG | - | chr1.2:71883234-71883253 | None:intergenic | 40.0% | |
| CTTACAATCAGCCTTCTCTA+AGG | + | chr1.2:71884441-71884460 | MS.gene60781:CDS | 40.0% | |
| CTTAGAGAAGGCTGATTGTA+AGG | - | chr1.2:71884443-71884462 | None:intergenic | 40.0% | |
| GCAATAATCTTCAAGGCAGA+TGG | - | chr1.2:71883352-71883371 | None:intergenic | 40.0% | |
| GCCATTCCTAAGAGAAATTC+CGG | + | chr1.2:71881978-71881997 | MS.gene60781:intron | 40.0% | |
| GTCTATGACAATGAAGATGG+TGG | + | chr1.2:71882367-71882386 | MS.gene60781:CDS | 40.0% | |
| GTGTGAAGCTAGAGATCTTT+GGG | - | chr1.2:71884528-71884547 | None:intergenic | 40.0% | |
| TAAAACCAAAGAGACATGGC+CGG | - | chr1.2:71883662-71883681 | None:intergenic | 40.0% | |
| TACTTACCGGGATAAGACTT+TGG | + | chr1.2:71881795-71881814 | MS.gene60781:intron | 40.0% | |
| TAGAGAAGGCTGATTGTAAG+GGG | - | chr1.2:71884441-71884460 | None:intergenic | 40.0% | |
| TCCGGAATTTCTCTTAGGAA+TGG | - | chr1.2:71881982-71882001 | None:intergenic | 40.0% | |
| TGGATTCTTGGCTTACTTCA+TGG | + | chr1.2:71884207-71884226 | MS.gene60781:CDS | 40.0% | |
| TGTGTGAAGCTAGAGATCTT+TGG | - | chr1.2:71884529-71884548 | None:intergenic | 40.0% | |
| TGTTTCCTTTGTGATGGTTG+TGG | + | chr1.2:71881885-71881904 | MS.gene60781:intron | 40.0% | |
| TTACGAGAAACAGATTGCGA+CGG | - | chr1.2:71884401-71884420 | None:intergenic | 40.0% | |
| ! | AAAGTCTTATCCCGGTAAGT+AGG | - | chr1.2:71881796-71881815 | None:intergenic | 40.0% |
| ! | AAGTCTTATCCCGGTAAGTA+GGG | - | chr1.2:71881795-71881814 | None:intergenic | 40.0% |
| ! | ACCAAAAACAGGTTTGCTTG+AGG | + | chr1.2:71883844-71883863 | MS.gene60781:intron | 40.0% |
| ! | CAACAACCAAAGTCTTATCC+CGG | - | chr1.2:71881804-71881823 | None:intergenic | 40.0% |
| ! | CGATTTTACTATACGCTTCC+TGG | + | chr1.2:71884031-71884050 | MS.gene60781:intron | 40.0% |
| ! | TCCTCAAGCAAACCTGTTTT+TGG | - | chr1.2:71883848-71883867 | None:intergenic | 40.0% |
| ! | TTGAGGCTGACTCACTATAT+CGG | - | chr1.2:71884685-71884704 | None:intergenic | 40.0% |
| !! | AAGTTTTATCCCGGTAAGTG+GGG | - | chr1.2:71881716-71881735 | None:intergenic | 40.0% |
| !! | AGAATACGGAGCCTTATTCT+TGG | + | chr1.2:71882195-71882214 | MS.gene60781:CDS | 40.0% |
| !! | CAAAGTTTTATCCCGGTAAG+TGG | - | chr1.2:71881718-71881737 | None:intergenic | 40.0% |
| !! | CTGCTAAGGTTGTGTTGATT+GGG | + | chr1.2:71881346-71881365 | MS.gene60781:CDS | 40.0% |
| !! | GTAGCTTTGAGGAAAAGGTT+AGG | + | chr1.2:71882311-71882330 | MS.gene60781:CDS | 40.0% |
| !! | GTCAAAGGTTCTGGAGAATA+CGG | + | chr1.2:71882181-71882200 | MS.gene60781:CDS | 40.0% |
| !! | TGCTTTGTTTGGGGAAAAGA+TGG | + | chr1.2:71882024-71882043 | MS.gene60781:intron | 40.0% |
| !!! | GCTTTTGATTTCAGCTCCAT+CGG | + | chr1.2:71882159-71882178 | MS.gene60781:intron | 40.0% |
| !!! | TTGTTTTGATGGTTAGAGGG+GGG | + | chr1.2:71882287-71882306 | MS.gene60781:CDS | 40.0% |
| AACTCTGTCAATAAGTCGCC+AGG | - | chr1.2:71884173-71884192 | None:intergenic | 45.0% | |
| AAGAGGCTCTGCCAAGAATA+AGG | - | chr1.2:71882209-71882228 | None:intergenic | 45.0% | |
| AGGAAGGCCTCATTTCATCA+GGG | - | chr1.2:71883988-71884007 | None:intergenic | 45.0% | |
| AGTAAGCCAAGAATCCACAC+AGG | - | chr1.2:71884204-71884223 | None:intergenic | 45.0% | |
| ATGAATTCACCGCGTTCCAT+CGG | + | chr1.2:71884548-71884567 | MS.gene60781:CDS | 45.0% | |
| ATTTCAGCTCCATCGGTCAA+AGG | + | chr1.2:71882166-71882185 | MS.gene60781:intron | 45.0% | |
| CACTGCAGACATAGCTAACA+GGG | - | chr1.2:71883163-71883182 | None:intergenic | 45.0% | |
| CCTCATAGAAGACACGAAAG+AGG | - | chr1.2:71884339-71884358 | None:intergenic | 45.0% | |
| CCTCTTTCGTGTCTTCTATG+AGG | + | chr1.2:71884336-71884355 | MS.gene60781:CDS | 45.0% | |
| CTCCAGCGCAATAATCTTCA+AGG | - | chr1.2:71883359-71883378 | None:intergenic | 45.0% | |
| CTTGGACTTGGAATGTGTGA+AGG | - | chr1.2:71884611-71884630 | None:intergenic | 45.0% | |
| CTTTGTCATGAGGCAGGTTA+TGG | + | chr1.2:71883619-71883638 | MS.gene60781:intron | 45.0% | |
| GAAGACTTACTGTGACAGCA+GGG | - | chr1.2:71883399-71883418 | None:intergenic | 45.0% | |
| GAATGTCTTTGTCATGAGGC+AGG | + | chr1.2:71883613-71883632 | MS.gene60781:intron | 45.0% | |
| GAGTTGTCTGGTACACTAAC+TGG | + | chr1.2:71882507-71882526 | MS.gene60781:intron | 45.0% | |
| GTTAGGATTGCACAAAGTGC+TGG | + | chr1.2:71882328-71882347 | MS.gene60781:CDS | 45.0% | |
| TAGGAAGGCCTCATTTCATC+AGG | - | chr1.2:71883989-71884008 | None:intergenic | 45.0% | |
| TCCTAAGATCCACAGAGCTA+CGG | - | chr1.2:71884499-71884518 | None:intergenic | 45.0% | |
| TCTGGTACACTAACTGGTTG+TGG | + | chr1.2:71882513-71882532 | MS.gene60781:intron | 45.0% | |
| TGCCTTGAAGATTATTGCGC+TGG | + | chr1.2:71883354-71883373 | MS.gene60781:CDS | 45.0% | |
| TTCCTTTGTGATGGTTGTGG+TGG | + | chr1.2:71881888-71881907 | MS.gene60781:intron | 45.0% | |
| TTGCAAGCGTGATGCAAGAA+CGG | + | chr1.2:71884247-71884266 | MS.gene60781:CDS | 45.0% | |
| TTGCATCACGCTTGCAAACT+GGG | - | chr1.2:71884244-71884263 | None:intergenic | 45.0% | |
| ! | GCTGCTAAGGTTGTGTTGAT+TGG | + | chr1.2:71881345-71881364 | MS.gene60781:CDS | 45.0% |
| !! | AAGGGGTACTTGCTAAAGAG+TGG | - | chr1.2:71884424-71884443 | None:intergenic | 45.0% |
| !! | ACTGAAGCATTGCTTGGACT+TGG | - | chr1.2:71884623-71884642 | None:intergenic | 45.0% |
| !! | CAGGGTTCTAGCTTAGTATG+TGG | + | chr1.2:71882751-71882770 | MS.gene60781:intron | 45.0% |
| !! | CAGGTTATGGCTATTTTCCC+AGG | + | chr1.2:71883632-71883651 | MS.gene60781:intron | 45.0% |
| !! | GGCTATTTTCCCAGGATTTC+CGG | + | chr1.2:71883640-71883659 | MS.gene60781:intron | 45.0% |
| !!! | TGGTAGTGTTTTTGGCACAC+TGG | + | chr1.2:71881521-71881540 | MS.gene60781:intron | 45.0% |
| !! | AATTATTTAAAAAAAATTCA+TGG | - | chr1.2:71883700-71883719 | None:intergenic | 5.0% |
| AAAGAGGATGCCGCAGATGA+CGG | - | chr1.2:71884323-71884342 | None:intergenic | 50.0% | |
| ACGCTTGCAAACTGGGCAAA+AGG | - | chr1.2:71884237-71884256 | None:intergenic | 50.0% | |
| AGAGCTACGGCTGAAGCTTA+GGG | - | chr1.2:71884486-71884505 | None:intergenic | 50.0% | |
| AGAGTTTCATGCTGCCTGTG+TGG | + | chr1.2:71884187-71884206 | MS.gene60781:intron | 50.0% | |
| ATGCTGCCTGTGTGGATTCT+TGG | + | chr1.2:71884195-71884214 | MS.gene60781:CDS | 50.0% | |
| ATGTAGCCGACCCTACTTAC+CGG | + | chr1.2:71881782-71881801 | MS.gene60781:intron | 50.0% | |
| ATTGCGCTGGAGAGAAACTC+AGG | + | chr1.2:71883367-71883386 | MS.gene60781:CDS | 50.0% | |
| CAGTTGAGGCATGCAAAGCA+TGG | + | chr1.2:71881631-71881650 | MS.gene60781:intron | 50.0% | |
| CGCAAATGGTGAGAAGCTTG+AGG | - | chr1.2:71884702-71884721 | None:intergenic | 50.0% | |
| CTTATCCCGGTAAGTAGGGT+CGG | - | chr1.2:71881791-71881810 | None:intergenic | 50.0% | |
| CTTGCATCACGCTTGCAAAC+TGG | - | chr1.2:71884245-71884264 | None:intergenic | 50.0% | |
| GATGGATAACCGATGGAACG+CGG | - | chr1.2:71884560-71884579 | None:intergenic | 50.0% | |
| GATTTCCGGCCATGTCTCTT+TGG | + | chr1.2:71883654-71883673 | MS.gene60781:intron | 50.0% | |
| GCACTGCAGACATAGCTAAC+AGG | - | chr1.2:71883164-71883183 | None:intergenic | 50.0% | |
| GGAAGACTTACTGTGACAGC+AGG | - | chr1.2:71883400-71883419 | None:intergenic | 50.0% | |
| GGCATCGCATACGAAGAGAA+AGG | + | chr1.2:71883208-71883227 | MS.gene60781:CDS | 50.0% | |
| GTTAGCTATGTCTGCAGTGC+TGG | + | chr1.2:71883164-71883183 | MS.gene60781:CDS | 50.0% | |
| TCAACATTCCGGAAGGGAGT+TGG | - | chr1.2:71884729-71884748 | None:intergenic | 50.0% | |
| TCAGTGGCAGGAAATTCTGC+TGG | + | chr1.2:71882997-71883016 | MS.gene60781:intron | 50.0% | |
| TCTCCAGAACCTTTGACCGA+TGG | - | chr1.2:71882178-71882197 | None:intergenic | 50.0% | |
| TGACGGTAGGACCTTAGAGA+AGG | - | chr1.2:71884455-71884474 | None:intergenic | 50.0% | |
| TGCAAGCGTGATGCAAGAAC+GGG | + | chr1.2:71884248-71884267 | MS.gene60781:CDS | 50.0% | |
| TTTATCCCGGTAAGTGGGGT+CGG | - | chr1.2:71881712-71881731 | None:intergenic | 50.0% | |
| ! | AGAGGTGTGGATTCTGAAGG+TGG | - | chr1.2:71884287-71884306 | None:intergenic | 50.0% |
| ! | AGCAGAGGTGTGGATTCTGA+AGG | - | chr1.2:71884290-71884309 | None:intergenic | 50.0% |
| ! | CAATGAAGATGGTGGCATCC+TGG | + | chr1.2:71882375-71882394 | MS.gene60781:CDS | 50.0% |
| ! | GCTGACTCACTATATCGGAG+TGG | - | chr1.2:71884680-71884699 | None:intergenic | 50.0% |
| !! | GGGGTGTAGCTTTGAGGAAA+AGG | + | chr1.2:71882306-71882325 | MS.gene60781:CDS | 50.0% |
| AAGAGGATGCCGCAGATGAC+GGG | - | chr1.2:71884322-71884341 | None:intergenic | 55.0% | |
| AGAGACATGGCCGGAAATCC+TGG | - | chr1.2:71883653-71883672 | None:intergenic | 55.0% | |
| AGCTTAGGGAGGGGGATTGA+CGG | - | chr1.2:71884472-71884491 | None:intergenic | 55.0% | |
| AGGGAGTTGGCAGACGCAAA+TGG | - | chr1.2:71884716-71884735 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAC+CGG | + | chr1.2:71881703-71881722 | MS.gene60781:intron | 55.0% | |
| CAGAGCTACGGCTGAAGCTT+AGG | - | chr1.2:71884487-71884506 | None:intergenic | 55.0% | |
| CCTGCGGACGAAGAAACAAG+TGG | - | chr1.2:71883190-71883209 | None:intergenic | 55.0% | |
| CGCCACCACAACCATCACAA+AGG | - | chr1.2:71881893-71881912 | None:intergenic | 55.0% | |
| CTACGGCTGAAGCTTAGGGA+GGG | - | chr1.2:71884482-71884501 | None:intergenic | 55.0% | |
| CTCTTCGTATGCGATGCCTG+CGG | - | chr1.2:71883206-71883225 | None:intergenic | 55.0% | |
| GAGACATGGCCGGAAATCCT+GGG | - | chr1.2:71883652-71883671 | None:intergenic | 55.0% | |
| GAGTGGATGCTGCTGATGAC+TGG | - | chr1.2:71884663-71884682 | None:intergenic | 55.0% | |
| GCTCCATCGGTCAAAGGTTC+TGG | + | chr1.2:71882172-71882191 | MS.gene60781:intron | 55.0% | |
| GCTGATGACTGGATGAACCG+AGG | - | chr1.2:71884652-71884671 | None:intergenic | 55.0% | |
| GGTAAGTAGGGTCGGCTACA+TGG | - | chr1.2:71881783-71881802 | None:intergenic | 55.0% | |
| GTCATCAACCCCGTCATCTG+CGG | + | chr1.2:71884310-71884329 | MS.gene60781:CDS | 55.0% | |
| TACGGCTGAAGCTTAGGGAG+GGG | - | chr1.2:71884481-71884500 | None:intergenic | 55.0% | |
| TGTAGCCGACCCTACTTACC+GGG | + | chr1.2:71881783-71881802 | MS.gene60781:intron | 55.0% | |
| ! | AAGCTTCAGCCGTAGCTCTG+TGG | + | chr1.2:71884487-71884506 | MS.gene60781:CDS | 55.0% |
| ! | CCACTTGTTTCTTCGTCCGC+AGG | + | chr1.2:71883187-71883206 | MS.gene60781:CDS | 55.0% |
| ! | GCCGTAGCTCTGTGGATCTT+AGG | + | chr1.2:71884495-71884514 | MS.gene60781:CDS | 55.0% |
| ! | GGTGTGGATTCTGAAGGTGG+TGG | - | chr1.2:71884284-71884303 | None:intergenic | 55.0% |
| ! | TAGAGGGGGGTGTAGCTTTG+AGG | + | chr1.2:71882300-71882319 | MS.gene60781:CDS | 55.0% |
| !! | GGTTGATGACAGCAGAGGTG+TGG | - | chr1.2:71884300-71884319 | None:intergenic | 55.0% |
| ACGGCTGAAGCTTAGGGAGG+GGG | - | chr1.2:71884480-71884499 | None:intergenic | 60.0% | |
| AGAGGATGCCGCAGATGACG+GGG | - | chr1.2:71884321-71884340 | None:intergenic | 60.0% | |
| GCGTGATGCAAGAACGGGTC+TGG | + | chr1.2:71884253-71884272 | MS.gene60781:CDS | 60.0% | |
| GCTACGGCTGAAGCTTAGGG+AGG | - | chr1.2:71884483-71884502 | None:intergenic | 60.0% | |
| GGTAAGTGGGGTCGGCTACA+TGG | - | chr1.2:71881704-71881723 | None:intergenic | 60.0% | |
| TAGGGAGGGGGATTGACGGT+AGG | - | chr1.2:71884468-71884487 | None:intergenic | 60.0% | |
| TGCGTCTGCCAACTCCCTTC+CGG | + | chr1.2:71884718-71884737 | MS.gene60781:CDS | 60.0% | |
| TGTAGCCGACCCCACTTACC+GGG | + | chr1.2:71881704-71881723 | MS.gene60781:intron | 60.0% | |
| !! | GACGGGGTTGATGACAGCAG+AGG | - | chr1.2:71884305-71884324 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 71881339 | 71884748 | 71881339 | ID=MS.gene60781 |
| chr1.2 | mRNA | 71881339 | 71884748 | 71881339 | ID=MS.gene60781.t1;Parent=MS.gene60781 |
| chr1.2 | exon | 71881339 | 71881411 | 71881339 | ID=MS.gene60781.t1.exon1;Parent=MS.gene60781.t1 |
| chr1.2 | CDS | 71881339 | 71881411 | 71881339 | ID=cds.MS.gene60781.t1;Parent=MS.gene60781.t1 |
| chr1.2 | exon | 71882173 | 71882403 | 71882173 | ID=MS.gene60781.t1.exon2;Parent=MS.gene60781.t1 |
| chr1.2 | CDS | 71882173 | 71882403 | 71882173 | ID=cds.MS.gene60781.t1;Parent=MS.gene60781.t1 |
| chr1.2 | exon | 71883001 | 71883408 | 71883001 | ID=MS.gene60781.t1.exon3;Parent=MS.gene60781.t1 |
| chr1.2 | CDS | 71883001 | 71883408 | 71883001 | ID=cds.MS.gene60781.t1;Parent=MS.gene60781.t1 |
| chr1.2 | exon | 71884189 | 71884748 | 71884189 | ID=MS.gene60781.t1.exon4;Parent=MS.gene60781.t1 |
| chr1.2 | CDS | 71884189 | 71884748 | 71884189 | ID=cds.MS.gene60781.t1;Parent=MS.gene60781.t1 |
| Gene Sequence |
| Protein sequence |
