Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64710.t1 | XP_003612082.1 | 96.1 | 129 | 5 | 0 | 1 | 129 | 1 | 129 | 1.10E-61 | 245.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64710.t1 | Q9FVX1 | 67.5 | 120 | 39 | 0 | 10 | 129 | 11 | 130 | 3.4e-38 | 159.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64710.t1 | G7KG98 | 96.1 | 129 | 5 | 0 | 1 | 129 | 1 | 129 | 8.2e-62 | 245.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene64710 | 0.814845 | 1.25E-51 | -1.69E-46 |
| MS.gene049159 | MS.gene64710 | 0.840428 | 8.75E-58 | -1.69E-46 |
| MS.gene049254 | MS.gene64710 | 0.832026 | 1.20E-55 | -1.69E-46 |
| MS.gene049283 | MS.gene64710 | 0.803172 | 3.96E-49 | -1.69E-46 |
| MS.gene049452 | MS.gene64710 | 0.809889 | 1.51E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene64710 | 0.841471 | 4.66E-58 | -1.69E-46 |
| MS.gene050559 | MS.gene64710 | 0.805391 | 1.37E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene64710 | 0.810886 | 9.22E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene64710 | 0.800491 | 1.41E-48 | -1.69E-46 |
| MS.gene050605 | MS.gene64710 | 0.800832 | 1.20E-48 | -1.69E-46 |
| MS.gene050654 | MS.gene64710 | 0.824663 | 7.15E-54 | -1.69E-46 |
| MS.gene050759 | MS.gene64710 | 0.819976 | 8.75E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene64710 | 0.803117 | 4.06E-49 | -1.69E-46 |
| MS.gene050962 | MS.gene64710 | 0.810002 | 1.43E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene64710 | 0.815907 | 7.27E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene64710 | 0.817303 | 3.54E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene64710 | 0.835339 | 1.78E-56 | -1.69E-46 |
| MS.gene051975 | MS.gene64710 | 0.810304 | 1.23E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene64710 | 0.806403 | 8.37E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene64710 | 0.807485 | 4.94E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene64710 | 0.80853 | 2.96E-50 | -1.69E-46 |
| MS.gene052775 | MS.gene64710 | 0.809958 | 1.46E-50 | -1.69E-46 |
| MS.gene052776 | MS.gene64710 | 0.801024 | 1.09E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene64710 | 0.803303 | 3.72E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene64710 | 0.813779 | 2.15E-51 | -1.69E-46 |
| MS.gene053931 | MS.gene64710 | 0.821023 | 5.03E-53 | -1.69E-46 |
| MS.gene054479 | MS.gene64710 | 0.822849 | 1.90E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene64710 | 0.815357 | 9.64E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene64710 | 0.817309 | 3.52E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene64710 | 0.802408 | 5.69E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene64710 | 0.812891 | 3.38E-51 | -1.69E-46 |
| MS.gene055222 | MS.gene64710 | 0.804542 | 2.06E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene64710 | 0.805064 | 1.60E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene64710 | 0.811149 | 8.09E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene64710 | 0.821089 | 4.86E-53 | -1.69E-46 |
| MS.gene056045 | MS.gene64710 | 0.808689 | 2.74E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene64710 | 0.817704 | 2.87E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene64710 | 0.814233 | 1.71E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene64710 | 0.805683 | 1.19E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene64710 | 0.841278 | 5.24E-58 | -1.69E-46 |
| MS.gene057034 | MS.gene64710 | 0.829434 | 5.16E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene64710 | 0.846177 | 2.56E-59 | -1.69E-46 |
| MS.gene057444 | MS.gene64710 | 0.802082 | 6.64E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene64710 | 0.80506 | 1.60E-49 | -1.69E-46 |
| MS.gene057855 | MS.gene64710 | 0.807899 | 4.03E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene64710 | 0.820879 | 5.43E-53 | -1.69E-46 |
| MS.gene058081 | MS.gene64710 | 0.805868 | 1.08E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene64710 | 0.809395 | 1.93E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene64710 | 0.823296 | 1.50E-53 | -1.69E-46 |
| MS.gene058783 | MS.gene64710 | 0.816635 | 4.99E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene64710 | 0.811912 | 5.52E-51 | -1.69E-46 |
| MS.gene05897 | MS.gene64710 | 0.813612 | 2.34E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene64710 | 0.829783 | 4.24E-55 | -1.69E-46 |
| MS.gene060011 | MS.gene64710 | 0.809911 | 1.50E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene64710 | 0.821127 | 4.76E-53 | -1.69E-46 |
| MS.gene06052 | MS.gene64710 | 0.800262 | 1.57E-48 | -1.69E-46 |
| MS.gene060802 | MS.gene64710 | 0.807911 | 4.01E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene64710 | 0.809344 | 1.98E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene64710 | 0.8247 | 7.00E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene64710 | 0.819662 | 1.03E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64710.t1 | MTR_5g021090 | 96.124 | 129 | 5 | 0 | 1 | 129 | 1 | 129 | 5.92e-91 | 259 |
| MS.gene64710.t1 | MTR_2g038560 | 59.223 | 103 | 42 | 0 | 24 | 126 | 19 | 121 | 9.88e-41 | 132 |
| MS.gene64710.t1 | MTR_2g038560 | 59.223 | 103 | 42 | 0 | 24 | 126 | 60 | 162 | 3.26e-40 | 132 |
| MS.gene64710.t1 | MTR_2g038560 | 59.223 | 103 | 42 | 0 | 24 | 126 | 63 | 165 | 3.67e-40 | 132 |
| MS.gene64710.t1 | MTR_7g035245 | 45.556 | 90 | 49 | 0 | 40 | 129 | 10 | 99 | 3.57e-24 | 89.7 |
| MS.gene64710.t1 | MTR_3g077570 | 43.182 | 88 | 50 | 0 | 42 | 129 | 27 | 114 | 2.79e-20 | 80.1 |
| MS.gene64710.t1 | MTR_1g069255 | 40.217 | 92 | 54 | 1 | 36 | 126 | 86 | 177 | 3.24e-19 | 79.3 |
| MS.gene64710.t1 | MTR_3g077560 | 42.353 | 85 | 49 | 0 | 42 | 126 | 30 | 114 | 5.35e-19 | 77.0 |
| MS.gene64710.t1 | MTR_7g108260 | 37.209 | 86 | 53 | 1 | 45 | 129 | 13 | 98 | 7.26e-12 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64710.t1 | AT1G77370 | 67.500 | 120 | 39 | 0 | 10 | 129 | 11 | 130 | 3.48e-54 | 166 |
| MS.gene64710.t1 | AT1G77370 | 55.479 | 146 | 39 | 1 | 10 | 129 | 11 | 156 | 2.76e-48 | 152 |
| MS.gene64710.t1 | AT5G20500 | 52.500 | 120 | 57 | 0 | 7 | 126 | 6 | 125 | 2.37e-41 | 134 |
| MS.gene64710.t1 | AT5G40370 | 44.828 | 87 | 48 | 0 | 40 | 126 | 10 | 96 | 5.44e-22 | 84.3 |
| MS.gene64710.t1 | AT5G40370 | 47.500 | 80 | 42 | 0 | 47 | 126 | 42 | 121 | 1.21e-19 | 79.0 |
| MS.gene64710.t1 | AT4G28730 | 43.478 | 92 | 51 | 1 | 36 | 126 | 73 | 164 | 1.25e-19 | 80.1 |
| MS.gene64710.t1 | AT2G20270 | 40.217 | 92 | 54 | 1 | 36 | 126 | 78 | 169 | 2.91e-18 | 76.6 |
| MS.gene64710.t1 | AT5G63030 | 42.683 | 82 | 47 | 0 | 45 | 126 | 31 | 112 | 9.52e-18 | 73.9 |
| MS.gene64710.t1 | AT4G28730 | 44.118 | 68 | 37 | 1 | 36 | 102 | 73 | 140 | 1.96e-12 | 60.5 |
Find 23 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACATTCAGGGTGTTCTTC+TGG | 0.230382 | 5.2:+12300293 | MS.gene64710:CDS |
| GGTTCCATTCTCAAGCAAAA+AGG | 0.276134 | 5.2:-12299452 | None:intergenic |
| AGATGATGGGTATCACATTC+AGG | 0.282138 | 5.2:+12300281 | MS.gene64710:intron |
| GTCCCACAAGTGTTTGTCTA+TGG | 0.290060 | 5.2:+12300336 | MS.gene64710:CDS |
| TACGTACGGGCAATAGGATT+TGG | 0.352701 | 5.2:-12299542 | None:intergenic |
| TATATATACGTACGGGCAAT+AGG | 0.386425 | 5.2:-12299548 | None:intergenic |
| GGTGTTCTTCTGGATTTGAT+TGG | 0.395517 | 5.2:+12300303 | MS.gene64710:CDS |
| GGAAACTGAATTTGAAGCTT+CGG | 0.429054 | 5.2:-12299473 | None:intergenic |
| TCTGTGCTTGTTTAGATGAT+GGG | 0.457786 | 5.2:+12300268 | MS.gene64710:intron |
| TCCCATAGACAAACACTTGT+GGG | 0.486540 | 5.2:-12300338 | None:intergenic |
| GATGATGGGTATCACATTCA+GGG | 0.487362 | 5.2:+12300282 | MS.gene64710:intron |
| TTTGTCTATGGGAAGCATAT+TGG | 0.501883 | 5.2:+12300348 | MS.gene64710:CDS |
| AAATCAAGCTCAACAACAAA+AGG | 0.509148 | 5.2:-12299694 | None:intergenic |
| GTCTATGGGAAGCATATTGG+TGG | 0.513655 | 5.2:+12300351 | MS.gene64710:CDS |
| GGAGAAGATGGTGATTCTGT+TGG | 0.515760 | 5.2:-12299521 | None:intergenic |
| GCAATAGGATTTGGAGAAGA+TGG | 0.516584 | 5.2:-12299533 | None:intergenic |
| TCCCACAAGTGTTTGTCTAT+GGG | 0.535106 | 5.2:+12300337 | MS.gene64710:CDS |
| AAGCATATTGGTGGATCAGA+TGG | 0.559694 | 5.2:+12300360 | MS.gene64710:CDS |
| GTTTCTGCAATTCACCACTC+TGG | 0.562376 | 5.2:-12301180 | None:intergenic |
| TTCCCATAGACAAACACTTG+TGG | 0.621034 | 5.2:-12300339 | None:intergenic |
| GAAGAATGAAGATGTTACAG+TGG | 0.663384 | 5.2:+12299392 | None:intergenic |
| GTTGTTGAGCTTGATTTGCG+AGG | 0.668245 | 5.2:+12299700 | MS.gene64710:CDS |
| CTCAGTGCTGCAGTCCAGAG+TGG | 0.673667 | 5.2:+12301166 | MS.gene64710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAACTGCTTTAA+TGG | + | chr5.2:12300083-12300102 | MS.gene64710:intron | 15.0% |
| !! | TATCTATATGTCATTATAAA+AGG | + | chr5.2:12301079-12301098 | MS.gene64710:intron | 15.0% |
| !!! | AAGGGAATATTTATTATTTT+CGG | - | chr5.2:12300906-12300925 | None:intergenic | 15.0% |
| !!! | TTTTTTTCCATATACTTTAA+AGG | + | chr5.2:12300997-12301016 | MS.gene64710:intron | 15.0% |
| !! | CTCTATATCCAAAAATATAA+GGG | + | chr5.2:12300820-12300839 | MS.gene64710:intron | 20.0% |
| !! | TAAACTATATGAAAATAACG+AGG | + | chr5.2:12300767-12300786 | MS.gene64710:intron | 20.0% |
| !! | TATGTCATTATAAAAGGTTA+AGG | + | chr5.2:12301085-12301104 | MS.gene64710:intron | 20.0% |
| !! | TCATATAGTTTAAGAACTAA+AGG | - | chr5.2:12300759-12300778 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCAAACA+AGG | - | chr5.2:12299769-12299788 | None:intergenic | 20.0% |
| !!! | CTTATATTTTTGGATATAGA+GGG | - | chr5.2:12300821-12300840 | None:intergenic | 20.0% |
| !!! | TATGTGTTTTGATATTTCTA+AGG | + | chr5.2:12299910-12299929 | MS.gene64710:intron | 20.0% |
| !!! | TATTTAGCCTTTAAAGTATA+TGG | - | chr5.2:12301007-12301026 | None:intergenic | 20.0% |
| !!! | TGATAGAAATTTTTTATGAG+AGG | + | chr5.2:12300872-12300891 | MS.gene64710:intron | 20.0% |
| ! | AAGAGAGTTATATATACGTA+CGG | - | chr5.2:12299559-12299578 | None:intergenic | 25.0% |
| ! | AATGATAACAGTTGTCTATT+TGG | - | chr5.2:12300216-12300235 | None:intergenic | 25.0% |
| ! | AGAAATAACCTATACATAAG+AGG | - | chr5.2:12300005-12300024 | None:intergenic | 25.0% |
| ! | ATTCAAATAGTATACTCAGT+CGG | - | chr5.2:12299968-12299987 | None:intergenic | 25.0% |
| ! | CCTCTATATCCAAAAATATA+AGG | + | chr5.2:12300819-12300838 | MS.gene64710:intron | 25.0% |
| ! | GAAATAACCTATACATAAGA+GGG | - | chr5.2:12300004-12300023 | None:intergenic | 25.0% |
| ! | GTTGTGATATTCATCAATTA+AGG | - | chr5.2:12299889-12299908 | None:intergenic | 25.0% |
| ! | GTTTAATTAATATGCTCTGT+CGG | + | chr5.2:12299822-12299841 | MS.gene64710:intron | 25.0% |
| ! | TAATGAAGGGATTAAATTGA+AGG | + | chr5.2:12301040-12301059 | MS.gene64710:intron | 25.0% |
| ! | TATATCCAAAAATATAAGGG+TGG | + | chr5.2:12300823-12300842 | MS.gene64710:intron | 25.0% |
| ! | TATGAAAATAACGAGGAATT+TGG | + | chr5.2:12300774-12300793 | MS.gene64710:intron | 25.0% |
| ! | TCAATTATTATGACGTGTTT+GGG | + | chr5.2:12299585-12299604 | MS.gene64710:intron | 25.0% |
| ! | TTCAATTATTATGACGTGTT+TGG | + | chr5.2:12299584-12299603 | MS.gene64710:intron | 25.0% |
| !! | ACAAATTTTCACATACTCAA+GGG | - | chr5.2:12300924-12300943 | None:intergenic | 25.0% |
| !! | ATACTTTAAAGGCTAAATAG+AGG | + | chr5.2:12301008-12301027 | MS.gene64710:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | - | chr5.2:12300485-12300504 | None:intergenic | 25.0% |
| !! | TTTTCATAAGTGTTTATGTC+AGG | + | chr5.2:12300168-12300187 | MS.gene64710:intron | 25.0% |
| !!! | CCTTATATTTTTGGATATAG+AGG | - | chr5.2:12300822-12300841 | None:intergenic | 25.0% |
| AAATCAAGCTCAACAACAAA+AGG | - | chr5.2:12299697-12299716 | None:intergenic | 30.0% | |
| AGAGAGTTATATATACGTAC+GGG | - | chr5.2:12299558-12299577 | None:intergenic | 30.0% | |
| ATGAGCAAACTTTGTAAGAA+TGG | - | chr5.2:12301132-12301151 | None:intergenic | 30.0% | |
| ATGGATAAAGAAACACAAAG+AGG | - | chr5.2:12301113-12301132 | None:intergenic | 30.0% | |
| CATTAGTACTTAAGATGCTA+GGG | - | chr5.2:12300956-12300975 | None:intergenic | 30.0% | |
| TAACAGTTGTCTATTTGGAT+TGG | - | chr5.2:12300211-12300230 | None:intergenic | 30.0% | |
| TCATTAGTACTTAAGATGCT+AGG | - | chr5.2:12300957-12300976 | None:intergenic | 30.0% | |
| TCTTAAGTACTAATGAGACA+AGG | + | chr5.2:12300961-12300980 | MS.gene64710:intron | 30.0% | |
| TGGATAAAGAAACACAAAGA+GGG | - | chr5.2:12301112-12301131 | None:intergenic | 30.0% | |
| TTTCATACTTAGTCCTTGTT+TGG | + | chr5.2:12300469-12300488 | MS.gene64710:intron | 30.0% | |
| ! | AATGTTTCTCTGATTTTCGT+AGG | + | chr5.2:12299626-12299645 | MS.gene64710:intron | 30.0% |
| ! | ACTTTCCACCCTTATATTTT+TGG | - | chr5.2:12300831-12300850 | None:intergenic | 30.0% |
| ! | AGAGGAGATAATGATAATGA+AGG | + | chr5.2:12301026-12301045 | MS.gene64710:intron | 30.0% |
| ! | GACAAATTTTCACATACTCA+AGG | - | chr5.2:12300925-12300944 | None:intergenic | 30.0% |
| ! | GAGGAGATAATGATAATGAA+GGG | + | chr5.2:12301027-12301046 | MS.gene64710:intron | 30.0% |
| !! | TCTTAGACTTTTGCTTTTCT+GGG | + | chr5.2:12300395-12300414 | MS.gene64710:intron | 30.0% |
| !! | TTCTTAGACTTTTGCTTTTC+TGG | + | chr5.2:12300394-12300413 | MS.gene64710:intron | 30.0% |
| CTCAAGCAAAAAGGGTAAAA+CGG | - | chr5.2:12299446-12299465 | None:intergenic | 35.0% | |
| GTTCCATTCTCAAGCAAAAA+GGG | - | chr5.2:12299454-12299473 | None:intergenic | 35.0% | |
| TAAGGAGACAACACAATCAT+CGG | - | chr5.2:12299871-12299890 | None:intergenic | 35.0% | |
| TATATATACGTACGGGCAAT+AGG | - | chr5.2:12299551-12299570 | None:intergenic | 35.0% | |
| TCTGTGCTTGTTTAGATGAT+GGG | + | chr5.2:12300268-12300287 | MS.gene64710:intron | 35.0% | |
| TTAAGATGCTAGGGATTAAC+AGG | - | chr5.2:12300947-12300966 | None:intergenic | 35.0% | |
| TTCTGTGCTTGTTTAGATGA+TGG | + | chr5.2:12300267-12300286 | MS.gene64710:intron | 35.0% | |
| ! | ATTGTTTTCGCGTAAGCTAA+AGG | + | chr5.2:12300039-12300058 | MS.gene64710:intron | 35.0% |
| ! | GGAAACTGAATTTGAAGCTT+CGG | - | chr5.2:12299476-12299495 | None:intergenic | 35.0% |
| ! | TTACCCTTTTTGCTTGAGAA+TGG | + | chr5.2:12299448-12299467 | MS.gene64710:CDS | 35.0% |
| ! | TTTGTCTATGGGAAGCATAT+TGG | + | chr5.2:12300348-12300367 | MS.gene64710:CDS | 35.0% |
| !! | GATTGCGTTTTGAACAAAAG+CGG | - | chr5.2:12299497-12299516 | None:intergenic | 35.0% |
| ACTGCTTTAATGGTCTGTCA+TGG | + | chr5.2:12300093-12300112 | MS.gene64710:intron | 40.0% | |
| CCTGATACCCTCTTATGTAT+AGG | + | chr5.2:12299994-12300013 | MS.gene64710:intron | 40.0% | |
| GCAATAGGATTTGGAGAAGA+TGG | - | chr5.2:12299536-12299555 | None:intergenic | 40.0% | |
| GGTGTTCTTCTGGATTTGAT+TGG | + | chr5.2:12300303-12300322 | MS.gene64710:CDS | 40.0% | |
| GGTTCCATTCTCAAGCAAAA+AGG | - | chr5.2:12299455-12299474 | None:intergenic | 40.0% | |
| GTGGAAAGTGAGAGAAGATA+GGG | + | chr5.2:12300842-12300861 | MS.gene64710:intron | 40.0% | |
| TCCCACAAGTGTTTGTCTAT+GGG | + | chr5.2:12300337-12300356 | MS.gene64710:CDS | 40.0% | |
| TCCCATAGACAAACACTTGT+GGG | - | chr5.2:12300341-12300360 | None:intergenic | 40.0% | |
| TTCCCATAGACAAACACTTG+TGG | - | chr5.2:12300342-12300361 | None:intergenic | 40.0% | |
| ! | AAGCATATTGGTGGATCAGA+TGG | + | chr5.2:12300360-12300379 | MS.gene64710:CDS | 40.0% |
| !! | AGATGATGGGTATCACATTC+AGG | + | chr5.2:12300281-12300300 | MS.gene64710:intron | 40.0% |
| !! | CCTATACATAAGAGGGTATC+AGG | - | chr5.2:12299997-12300016 | None:intergenic | 40.0% |
| !! | GATGATGGGTATCACATTCA+GGG | + | chr5.2:12300282-12300301 | MS.gene64710:intron | 40.0% |
| AGGGATGCATGTTTGAGAGA+GGG | - | chr5.2:12300802-12300821 | None:intergenic | 45.0% | |
| GGAGAAGATGGTGATTCTGT+TGG | - | chr5.2:12299524-12299543 | None:intergenic | 45.0% | |
| GGTGGAAAGTGAGAGAAGAT+AGG | + | chr5.2:12300841-12300860 | MS.gene64710:intron | 45.0% | |
| GTCCCACAAGTGTTTGTCTA+TGG | + | chr5.2:12300336-12300355 | MS.gene64710:CDS | 45.0% | |
| GTTTCTGCAATTCACCACTC+TGG | - | chr5.2:12301183-12301202 | None:intergenic | 45.0% | |
| TACGTACGGGCAATAGGATT+TGG | - | chr5.2:12299545-12299564 | None:intergenic | 45.0% | |
| ! | GTCTATGGGAAGCATATTGG+TGG | + | chr5.2:12300351-12300370 | MS.gene64710:CDS | 45.0% |
| ! | TCACATTCAGGGTGTTCTTC+TGG | + | chr5.2:12300293-12300312 | MS.gene64710:CDS | 45.0% |
| !! | GTTGTTGAGCTTGATTTGCG+AGG | + | chr5.2:12299700-12299719 | MS.gene64710:CDS | 45.0% |
| GAGGGATGCATGTTTGAGAG+AGG | - | chr5.2:12300803-12300822 | None:intergenic | 50.0% | |
| CTCAGTGCTGCAGTCCAGAG+TGG | + | chr5.2:12301166-12301185 | MS.gene64710:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 12299397 | 12301219 | 12299397 | ID=MS.gene64710 |
| chr5.2 | mRNA | 12299397 | 12301219 | 12299397 | ID=MS.gene64710.t1;Parent=MS.gene64710 |
| chr5.2 | exon | 12299397 | 12299557 | 12299397 | ID=MS.gene64710.t1.exon1;Parent=MS.gene64710.t1 |
| chr5.2 | CDS | 12299397 | 12299557 | 12299397 | ID=cds.MS.gene64710.t1;Parent=MS.gene64710.t1 |
| chr5.2 | exon | 12299648 | 12299721 | 12299648 | ID=MS.gene64710.t1.exon2;Parent=MS.gene64710.t1 |
| chr5.2 | CDS | 12299648 | 12299721 | 12299648 | ID=cds.MS.gene64710.t1;Parent=MS.gene64710.t1 |
| chr5.2 | exon | 12300283 | 12300381 | 12300283 | ID=MS.gene64710.t1.exon3;Parent=MS.gene64710.t1 |
| chr5.2 | CDS | 12300283 | 12300381 | 12300283 | ID=cds.MS.gene64710.t1;Parent=MS.gene64710.t1 |
| chr5.2 | exon | 12301164 | 12301219 | 12301164 | ID=MS.gene64710.t1.exon4;Parent=MS.gene64710.t1 |
| chr5.2 | CDS | 12301164 | 12301219 | 12301164 | ID=cds.MS.gene64710.t1;Parent=MS.gene64710.t1 |
| Gene Sequence |
| Protein sequence |
