Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68712.t1 | XP_013464044.1 | 92 | 399 | 8 | 1 | 1 | 375 | 50 | 448 | 2.30E-195 | 691.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68712.t1 | Q9SL56 | 68.3 | 401 | 98 | 3 | 1 | 375 | 48 | 445 | 4.4e-147 | 522.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68712.t1 | A0A072V7P9 | 92.0 | 399 | 8 | 1 | 1 | 375 | 50 | 448 | 1.6e-195 | 691.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene68712 | 0.834409 | 3.05E-56 | -1.69E-46 |
| MS.gene04919 | MS.gene68712 | 0.827907 | 1.21E-54 | -1.69E-46 |
| MS.gene04920 | MS.gene68712 | 0.855675 | 5.38E-62 | -1.69E-46 |
| MS.gene049254 | MS.gene68712 | 0.815391 | 9.47E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene68712 | 0.868848 | 4.81E-66 | -1.69E-46 |
| MS.gene049499 | MS.gene68712 | 0.843208 | 1.61E-58 | -1.69E-46 |
| MS.gene049983 | MS.gene68712 | 0.834421 | 3.03E-56 | -1.69E-46 |
| MS.gene050414 | MS.gene68712 | 0.831776 | 1.38E-55 | -1.69E-46 |
| MS.gene050945 | MS.gene68712 | 0.815798 | 7.69E-52 | -1.69E-46 |
| MS.gene051332 | MS.gene68712 | 0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene68712 | 0.804632 | 1.97E-49 | -1.69E-46 |
| MS.gene051597 | MS.gene68712 | 0.818645 | 1.76E-52 | -1.69E-46 |
| MS.gene051637 | MS.gene68712 | 0.808994 | 2.36E-50 | -1.69E-46 |
| MS.gene051699 | MS.gene68712 | 0.815196 | 1.05E-51 | -1.69E-46 |
| MS.gene052016 | MS.gene68712 | 0.812764 | 3.60E-51 | -1.69E-46 |
| MS.gene052037 | MS.gene68712 | 0.80128 | 9.70E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene68712 | 0.815873 | 7.40E-52 | -1.69E-46 |
| MS.gene052534 | MS.gene68712 | 0.817777 | 2.77E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene68712 | 0.804863 | 1.76E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene68712 | 0.825971 | 3.50E-54 | -1.69E-46 |
| MS.gene053272 | MS.gene68712 | -0.838593 | 2.62E-57 | -1.69E-46 |
| MS.gene053963 | MS.gene68712 | 0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene68712 | 0.820679 | 6.04E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene68712 | 0.806657 | 7.40E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene68712 | 0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene68712 | 0.809867 | 1.53E-50 | -1.69E-46 |
| MS.gene054957 | MS.gene68712 | 0.837807 | 4.18E-57 | -1.69E-46 |
| MS.gene055513 | MS.gene68712 | 0.80043 | 1.45E-48 | -1.69E-46 |
| MS.gene056272 | MS.gene68712 | 0.811229 | 7.77E-51 | -1.69E-46 |
| MS.gene056776 | MS.gene68712 | 0.826869 | 2.14E-54 | -1.69E-46 |
| MS.gene056973 | MS.gene68712 | 0.810924 | 9.05E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene68712 | 0.828671 | 7.90E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene68712 | 0.832594 | 8.65E-56 | -1.69E-46 |
| MS.gene057890 | MS.gene68712 | -0.803266 | 3.78E-49 | -1.69E-46 |
| MS.gene057893 | MS.gene68712 | -0.809381 | 1.95E-50 | -1.69E-46 |
| MS.gene058159 | MS.gene68712 | 0.844109 | 9.27E-59 | -1.69E-46 |
| MS.gene058279 | MS.gene68712 | 0.850008 | 2.24E-60 | -1.69E-46 |
| MS.gene058330 | MS.gene68712 | 0.816853 | 4.46E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene68712 | 0.822164 | 2.74E-53 | -1.69E-46 |
| MS.gene058783 | MS.gene68712 | 0.818791 | 1.63E-52 | -1.69E-46 |
| MS.gene059146 | MS.gene68712 | 0.810765 | 9.80E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene68712 | 0.81129 | 7.54E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene68712 | -0.851925 | 6.46E-61 | -1.69E-46 |
| MS.gene059901 | MS.gene68712 | -0.817176 | 3.78E-52 | -1.69E-46 |
| MS.gene059935 | MS.gene68712 | 0.801325 | 9.50E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene68712 | 0.802965 | 4.37E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene68712 | 0.818101 | 2.34E-52 | -1.69E-46 |
| MS.gene060522 | MS.gene68712 | 0.808603 | 2.86E-50 | -1.69E-46 |
| MS.gene060527 | MS.gene68712 | 0.814034 | 1.89E-51 | -1.69E-46 |
| MS.gene060777 | MS.gene68712 | 0.806672 | 7.34E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene68712 | 0.8194 | 1.19E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene68712 | 0.832458 | 9.35E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene68712 | 0.842574 | 2.38E-58 | -1.69E-46 |
| MS.gene061100 | MS.gene68712 | 0.840503 | 8.36E-58 | -1.69E-46 |
| MS.gene061160 | MS.gene68712 | 0.839245 | 1.78E-57 | -1.69E-46 |
| MS.gene061188 | MS.gene68712 | 0.813453 | 2.54E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 113 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTCCATTGGCATGTATT+TGG | 0.217319 | 2.4:-37475677 | MS.gene68712:CDS |
| ATCACCTTGATGTTTCTTTC+TGG | 0.224719 | 2.4:-37474663 | MS.gene68712:CDS |
| TTGAGGTTGTTTCTTGTGTT+TGG | 0.258719 | 2.4:-37475628 | MS.gene68712:CDS |
| CCTTGTGTTGTTGCAGTTGT+TGG | 0.271567 | 2.4:-37475484 | MS.gene68712:CDS |
| CAGTTGTTGGGAATTGGCTT+GGG | 0.271735 | 2.4:-37475471 | MS.gene68712:CDS |
| TAGTATTGTTAAAAGTGTTC+TGG | 0.280648 | 2.4:-37475806 | MS.gene68712:CDS |
| TTTGATATTGGAGGAGTTCT+AGG | 0.290006 | 2.4:-37474816 | MS.gene68712:CDS |
| CTCATTTCAATTTCCATTCC+AGG | 0.291532 | 2.4:+37475247 | None:intergenic |
| ATCAAAGAGGGGATTGATAA+TGG | 0.292694 | 2.4:-37475446 | MS.gene68712:CDS |
| AGTTATTGCTTCGGGTGTTT+TGG | 0.295231 | 2.4:-37475380 | MS.gene68712:CDS |
| TCAAATTCTTCGTCTGCTAT+TGG | 0.299829 | 2.4:-37475145 | MS.gene68712:CDS |
| CTTTCAACAATATTTGATAT+TGG | 0.314253 | 2.4:-37474828 | MS.gene68712:CDS |
| TGTGGAGTGTTTCAGTCAAT+TGG | 0.315612 | 2.4:-37475511 | MS.gene68712:CDS |
| GTTCCCCGGGTTCCATTAAA+AGG | 0.330180 | 2.4:+37475739 | None:intergenic |
| TGAGGTTGTTTCTTGTGTTT+GGG | 0.335721 | 2.4:-37475627 | MS.gene68712:CDS |
| TGGTTTGATGTTCATGTGTT+GGG | 0.336491 | 2.4:-37475559 | MS.gene68712:CDS |
| GTGTTGGTTGCAGCGGTTGC+TGG | 0.336822 | 2.4:-37474882 | MS.gene68712:intron |
| CATTGGTTCAGTTATTGCTT+CGG | 0.342494 | 2.4:-37475389 | MS.gene68712:CDS |
| GCTTTAGTGGTGGGAATTCT+CGG | 0.342732 | 2.4:-37474575 | MS.gene68712:CDS |
| AACCAATTCAACCCTTGATT+CGG | 0.343395 | 2.4:-37475770 | MS.gene68712:CDS |
| GGTTCTGTTGGAGCTGCTCT+TGG | 0.349690 | 2.4:-37474516 | MS.gene68712:CDS |
| GGGGATTGATAATGGGGATA+TGG | 0.364452 | 2.4:-37475438 | MS.gene68712:CDS |
| ACCAATTCAACCCTTGATTC+GGG | 0.365317 | 2.4:-37475769 | MS.gene68712:CDS |
| TCAAAGAGGGGATTGATAAT+GGG | 0.369497 | 2.4:-37475445 | MS.gene68712:CDS |
| GGTTGGTCGTTTGTGGTGCC+TGG | 0.375096 | 2.4:-37475346 | MS.gene68712:CDS |
| ACCCGAATCAAGGGTTGAAT+TGG | 0.376330 | 2.4:+37475768 | None:intergenic |
| TTGTGAATCCCGTGGATATA+GGG | 0.382740 | 2.4:-37475279 | MS.gene68712:CDS |
| CTCGGTACGCAGGGCTTTAG+TGG | 0.382958 | 2.4:-37474588 | MS.gene68712:CDS |
| GCAGTTGTTGGGAATTGGCT+TGG | 0.384000 | 2.4:-37475472 | MS.gene68712:CDS |
| GTTTCTTGTGTTTGGGATGG+TGG | 0.396297 | 2.4:-37475620 | MS.gene68712:CDS |
| GCCAAGCCGGTGAGTTCCCC+GGG | 0.400238 | 2.4:+37475726 | None:intergenic |
| TTGTTGCAGTTGTTGGGAAT+TGG | 0.403901 | 2.4:-37475477 | MS.gene68712:CDS |
| ATGAAAATGATCAAAATTCC+AGG | 0.406929 | 2.4:+37475328 | None:intergenic |
| TCCATTGGCATGTATTTGGC+TGG | 0.414022 | 2.4:-37475673 | MS.gene68712:CDS |
| TGGCTGGTCATGTTGGTGAT+AGG | 0.414837 | 2.4:-37475657 | MS.gene68712:CDS |
| GTTGTGAATCCCGTGGATAT+AGG | 0.415165 | 2.4:-37475280 | MS.gene68712:CDS |
| AGTATTGTTAAAAGTGTTCT+GGG | 0.416808 | 2.4:-37475805 | MS.gene68712:CDS |
| CTTGTGTTGTTGCAGTTGTT+GGG | 0.419466 | 2.4:-37475483 | MS.gene68712:CDS |
| GAATTTGAAATCGAACTATC+AGG | 0.420709 | 2.4:+37475160 | None:intergenic |
| ACCTCGGTTGGGAATATCAT+TGG | 0.423859 | 2.4:-37475406 | MS.gene68712:CDS |
| ATTGGTTCAGTTATTGCTTC+GGG | 0.436836 | 2.4:-37475388 | MS.gene68712:CDS |
| CTGGTTTGATGTTCATGTGT+TGG | 0.438300 | 2.4:-37475560 | MS.gene68712:CDS |
| CGCCAAGCCGGTGAGTTCCC+CGG | 0.439386 | 2.4:+37475725 | None:intergenic |
| TGGATGGGGTTGGTCGTTTG+TGG | 0.439831 | 2.4:-37475353 | MS.gene68712:CDS |
| ACTGTTACTGCAATCATTGA+TGG | 0.445070 | 2.4:-37474543 | MS.gene68712:CDS |
| TTTCTTACTTCTTACTCCAT+TGG | 0.445900 | 2.4:-37475688 | MS.gene68712:CDS |
| AATCTATCTCACAAAACTGC+TGG | 0.446010 | 2.4:-37474855 | MS.gene68712:CDS |
| GTGGAGTGTTTCAGTCAATT+GGG | 0.451035 | 2.4:-37475510 | MS.gene68712:CDS |
| GTCGGTGTTCAGATTGTTTG+TGG | 0.462172 | 2.4:-37475529 | MS.gene68712:CDS |
| GATATAGGGTTTGCGAGTCC+TGG | 0.467048 | 2.4:-37475265 | MS.gene68712:CDS |
| TGGAATTCGCATACCTCGGT+TGG | 0.474948 | 2.4:-37475418 | MS.gene68712:CDS |
| GGCTGCCGATCTCGGTACGC+AGG | 0.479417 | 2.4:-37474598 | MS.gene68712:CDS |
| CTTTAGTGGTGGGAATTCTC+GGG | 0.483451 | 2.4:-37474574 | MS.gene68712:CDS |
| ATTGGCTTGGGGAATCAAAG+AGG | 0.486300 | 2.4:-37475459 | MS.gene68712:CDS |
| ACTGCTGTGGCTGCCGATCT+CGG | 0.489455 | 2.4:-37474606 | MS.gene68712:CDS |
| TGGTGGGAATTCTCGGGCAC+TGG | 0.495438 | 2.4:-37474568 | MS.gene68712:CDS |
| AAGGCGGCCAACCCGAATCA+AGG | 0.499130 | 2.4:+37475758 | None:intergenic |
| TTTCTTGTGTTTGGGATGGT+GGG | 0.499647 | 2.4:-37475619 | MS.gene68712:CDS |
| ACCCGGGGAACTCACCGGCT+TGG | 0.506049 | 2.4:-37475727 | MS.gene68712:CDS |
| AATCATATCAGAAATGAAAC+CGG | 0.508019 | 2.4:+37474782 | None:intergenic |
| TCAACAATATTTGATATTGG+AGG | 0.508821 | 2.4:-37474825 | MS.gene68712:CDS |
| GGTACGCAGGGCTTTAGTGG+TGG | 0.512487 | 2.4:-37474585 | MS.gene68712:CDS |
| ACTGCAATCATTGATGGTAC+TGG | 0.512877 | 2.4:-37474537 | MS.gene68712:CDS |
| AAAGCCCTGCGTACCGAGAT+CGG | 0.516139 | 2.4:+37474593 | None:intergenic |
| GTTGTTTCTTGTGTTTGGGA+TGG | 0.516674 | 2.4:-37475623 | MS.gene68712:CDS |
| GCACGATACAAAAGCAGAGC+TGG | 0.518122 | 2.4:+37474714 | None:intergenic |
| GAATCAAGGGTTGAATTGGT+TGG | 0.521050 | 2.4:+37475772 | None:intergenic |
| ATTGAAATGAGTGTTGAAAC+GGG | 0.522480 | 2.4:-37475235 | MS.gene68712:CDS |
| GTGTTTGGGATGGTGGGCAG+CGG | 0.524244 | 2.4:-37475613 | MS.gene68712:CDS |
| GAAACATAACCTGCTAAAAG+TGG | 0.525372 | 2.4:+37474492 | None:intergenic |
| GTTGAATTGGTTGGAACTGT+GGG | 0.528850 | 2.4:+37475781 | None:intergenic |
| GGAATTCGCATACCTCGGTT+GGG | 0.531280 | 2.4:-37475417 | MS.gene68712:CDS |
| GAATCGATAGAAACAAGAAC+AGG | 0.531762 | 2.4:+37474736 | None:intergenic |
| CAAAGAGGGGATTGATAATG+GGG | 0.532878 | 2.4:-37475444 | MS.gene68712:CDS |
| GTACGCAGGGCTTTAGTGGT+GGG | 0.535609 | 2.4:-37474584 | MS.gene68712:CDS |
| TTAGAGGCGTGGAAAATACC+TGG | 0.539044 | 2.4:-37475118 | MS.gene68712:CDS |
| ATCTATCTCACAAAACTGCT+GGG | 0.540237 | 2.4:-37474854 | MS.gene68712:CDS |
| ATTCAACCCTTGATTCGGGT+TGG | 0.543048 | 2.4:-37475765 | MS.gene68712:CDS |
| AGTTGTTGGGAATTGGCTTG+GGG | 0.544754 | 2.4:-37475470 | MS.gene68712:CDS |
| GCTGCCGATCTCGGTACGCA+GGG | 0.553404 | 2.4:-37474597 | MS.gene68712:CDS |
| ATGGAACCCGGGGAACTCAC+CGG | 0.555786 | 2.4:-37475732 | MS.gene68712:CDS |
| AAAGCAAACGGAGCGACTCC+AGG | 0.556148 | 2.4:+37475100 | None:intergenic |
| GGTTGAATTGGTTGGAACTG+TGG | 0.556170 | 2.4:+37475780 | None:intergenic |
| AGGGTTTGCGAGTCCTGGAA+TGG | 0.556603 | 2.4:-37475260 | MS.gene68712:CDS |
| AATTGAAATGAGTGTTGAAA+CGG | 0.556957 | 2.4:-37475236 | MS.gene68712:CDS |
| GCAGTTGTAATTAGCGAGTA+CGG | 0.564151 | 2.4:+37474624 | None:intergenic |
| ATTGATGGTACTGGTTCTGT+TGG | 0.568619 | 2.4:-37474528 | MS.gene68712:CDS |
| GGGAACTCACCGGCTTGGCG+AGG | 0.571530 | 2.4:-37475722 | MS.gene68712:CDS |
| CGAGATCAACCTCGCCAAGC+CGG | 0.572872 | 2.4:+37475713 | None:intergenic |
| GGTTTGATGTTCATGTGTTG+GGG | 0.575219 | 2.4:-37475558 | MS.gene68712:CDS |
| TTGGCTTGGGGAATCAAAGA+GGG | 0.575740 | 2.4:-37475458 | MS.gene68712:CDS |
| ATGTATTTGGCTGGTCATGT+TGG | 0.577593 | 2.4:-37475664 | MS.gene68712:CDS |
| CCAACAACTGCAACAACACA+AGG | 0.578535 | 2.4:+37475484 | None:intergenic |
| AAATCCAGAAAGAAACATCA+AGG | 0.579928 | 2.4:+37474659 | None:intergenic |
| GTTCTAGGCGGAATCACCGC+CGG | 0.584479 | 2.4:-37474801 | MS.gene68712:CDS |
| TGTTGAAACGGGCGGTGCAG+AGG | 0.585857 | 2.4:-37475224 | MS.gene68712:CDS |
| CTCGCAAACCCTATATCCAC+GGG | 0.599278 | 2.4:+37475271 | None:intergenic |
| TCTGCAGAAAGTCGAATCAG+AGG | 0.600067 | 2.4:-37475200 | MS.gene68712:CDS |
| AGGCGGCCAACCCGAATCAA+GGG | 0.601656 | 2.4:+37475759 | None:intergenic |
| ACTCGCAAACCCTATATCCA+CGG | 0.607916 | 2.4:+37475270 | None:intergenic |
| ACCAGCCAAATACATGCCAA+TGG | 0.609265 | 2.4:+37475672 | None:intergenic |
| CTCGCTAATTACAACTGCTG+TGG | 0.611850 | 2.4:-37474619 | MS.gene68712:CDS |
| TTGGTGATAGGATTGATTTG+AGG | 0.616292 | 2.4:-37475645 | MS.gene68712:CDS |
| CCCTTCTACATAAGGCACAC+AGG | 0.627165 | 2.4:-37475029 | MS.gene68712:intron |
| GATATGGAATTCGCATACCT+CGG | 0.635544 | 2.4:-37475422 | MS.gene68712:CDS |
| CCCCGGGTTCCATTAAAAGG+CGG | 0.642431 | 2.4:+37475742 | None:intergenic |
| GAGTGTTTCAGTCAATTGGG+TGG | 0.653771 | 2.4:-37475507 | MS.gene68712:CDS |
| GTTTCTTGTTGTGAATCCCG+TGG | 0.657187 | 2.4:-37475287 | MS.gene68712:CDS |
| TGGCTTGGGGAATCAAAGAG+GGG | 0.677167 | 2.4:-37475457 | MS.gene68712:CDS |
| ACCAATGATATTCCCAACCG+AGG | 0.679777 | 2.4:+37475405 | None:intergenic |
| CATATCAGAAATGAAACCGG+CGG | 0.690344 | 2.4:+37474785 | None:intergenic |
| GATATTGGAGGAGTTCTAGG+CGG | 0.700532 | 2.4:-37474813 | MS.gene68712:CDS |
| GAAATGAGTGTTGAAACGGG+CGG | 0.861509 | 2.4:-37475232 | MS.gene68712:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTAAACTAAATAAGATA+TGG | + | chr2.4:37475372-37475391 | None:intergenic | 15.0% |
| !! | CTTTCAACAATATTTGATAT+TGG | - | chr2.4:37475489-37475508 | MS.gene68712:CDS | 20.0% |
| !!! | AATTTTGATCATTTTCATTG+GGG | - | chr2.4:37474994-37475013 | MS.gene68712:intron | 20.0% |
| !!! | GAATTTTGATCATTTTCATT+GGG | - | chr2.4:37474993-37475012 | MS.gene68712:intron | 20.0% |
| !!! | GTTTTTTTACGATACTTTTT+GGG | - | chr2.4:37474726-37474745 | MS.gene68712:CDS | 20.0% |
| !!! | TTGAATTTGTTATTTTGTGT+TGG | - | chr2.4:37475419-37475438 | MS.gene68712:CDS | 20.0% |
| ! | AATCATATCAGAAATGAAAC+CGG | + | chr2.4:37475538-37475557 | None:intergenic | 25.0% |
| ! | ATGAAAATGATCAAAATTCC+AGG | + | chr2.4:37474992-37475011 | None:intergenic | 25.0% |
| ! | TCAACAATATTTGATATTGG+AGG | - | chr2.4:37475492-37475511 | MS.gene68712:CDS | 25.0% |
| !! | AGAACACTTTTAACAATACT+AGG | + | chr2.4:37474512-37474531 | None:intergenic | 25.0% |
| !!! | AATTGAAATGAGTGTTGAAA+CGG | - | chr2.4:37475081-37475100 | MS.gene68712:intron | 25.0% |
| !!! | AGTATTGTTAAAAGTGTTCT+GGG | - | chr2.4:37474512-37474531 | MS.gene68712:CDS | 25.0% |
| !!! | GGAATTTTGATCATTTTCAT+TGG | - | chr2.4:37474992-37475011 | MS.gene68712:intron | 25.0% |
| !!! | GGTTTTTTTACGATACTTTT+TGG | - | chr2.4:37474725-37474744 | MS.gene68712:CDS | 25.0% |
| !!! | TAGTATTGTTAAAAGTGTTC+TGG | - | chr2.4:37474511-37474530 | MS.gene68712:CDS | 25.0% |
| AAATCCAGAAAGAAACATCA+AGG | + | chr2.4:37475661-37475680 | None:intergenic | 30.0% | |
| GAAAAGAGACAAAAAGCAAA+CGG | + | chr2.4:37475232-37475251 | None:intergenic | 30.0% | |
| TTGCTTACACTTTCTTGTAT+TGG | - | chr2.4:37475262-37475281 | MS.gene68712:CDS | 30.0% | |
| TTTCTTACTTCTTACTCCAT+TGG | - | chr2.4:37474629-37474648 | MS.gene68712:CDS | 30.0% | |
| ! | ACACTTTTAACAATACTAGG+AGG | + | chr2.4:37474509-37474528 | None:intergenic | 30.0% |
| ! | GAATTTGAAATCGAACTATC+AGG | + | chr2.4:37475160-37475179 | None:intergenic | 30.0% |
| ! | GATGTTTCTTTCTGGATTTT+TGG | - | chr2.4:37475662-37475681 | MS.gene68712:CDS | 30.0% |
| !! | ATTGAAATGAGTGTTGAAAC+GGG | - | chr2.4:37475082-37475101 | MS.gene68712:intron | 30.0% |
| !!! | TTTACGATACTTTTTGGGTT+AGG | - | chr2.4:37474731-37474750 | MS.gene68712:CDS | 30.0% |
| AACCAATTCAACCCTTGATT+CGG | - | chr2.4:37474547-37474566 | MS.gene68712:CDS | 35.0% | |
| AATCTATCTCACAAAACTGC+TGG | - | chr2.4:37475462-37475481 | MS.gene68712:CDS | 35.0% | |
| ACTGTTACTGCAATCATTGA+TGG | - | chr2.4:37475774-37475793 | MS.gene68712:CDS | 35.0% | |
| ATCAAAGAGGGGATTGATAA+TGG | - | chr2.4:37474871-37474890 | MS.gene68712:CDS | 35.0% | |
| ATCACCTTGATGTTTCTTTC+TGG | - | chr2.4:37475654-37475673 | MS.gene68712:CDS | 35.0% | |
| ATCTATCTCACAAAACTGCT+GGG | - | chr2.4:37475463-37475482 | MS.gene68712:CDS | 35.0% | |
| ATTGGTTACCCTTCTACATA+AGG | - | chr2.4:37475280-37475299 | MS.gene68712:CDS | 35.0% | |
| CTCATTTCAATTTCCATTCC+AGG | + | chr2.4:37475073-37475092 | None:intergenic | 35.0% | |
| GAATCGATAGAAACAAGAAC+AGG | + | chr2.4:37475584-37475603 | None:intergenic | 35.0% | |
| TCAAATTCTTCGTCTGCTAT+TGG | - | chr2.4:37475172-37475191 | MS.gene68712:CDS | 35.0% | |
| TGGTTTGATGTTCATGTGTT+GGG | - | chr2.4:37474758-37474777 | MS.gene68712:CDS | 35.0% | |
| TTACTCCATTGGCATGTATT+TGG | - | chr2.4:37474640-37474659 | MS.gene68712:CDS | 35.0% | |
| TTTGATATTGGAGGAGTTCT+AGG | - | chr2.4:37475501-37475520 | MS.gene68712:CDS | 35.0% | |
| ! | ATTGGTTCAGTTATTGCTTC+GGG | - | chr2.4:37474929-37474948 | MS.gene68712:intron | 35.0% |
| ! | GATCATTTTCATTGGGGTTT+TGG | - | chr2.4:37475000-37475019 | MS.gene68712:intron | 35.0% |
| ! | TCAAAGAGGGGATTGATAAT+GGG | - | chr2.4:37474872-37474891 | MS.gene68712:CDS | 35.0% |
| !! | CATTGGTTCAGTTATTGCTT+CGG | - | chr2.4:37474928-37474947 | MS.gene68712:intron | 35.0% |
| !! | GTCTGCTATTGGATTTTTAG+AGG | - | chr2.4:37475183-37475202 | MS.gene68712:CDS | 35.0% |
| !! | TGAGGTTGTTTCTTGTGTTT+GGG | - | chr2.4:37474690-37474709 | MS.gene68712:CDS | 35.0% |
| !! | TTGAGGTTGTTTCTTGTGTT+TGG | - | chr2.4:37474689-37474708 | MS.gene68712:CDS | 35.0% |
| !! | TTGGTGATAGGATTGATTTG+AGG | - | chr2.4:37474672-37474691 | MS.gene68712:CDS | 35.0% |
| !!! | CTTTCTGGATTTTTGGTGAA+TGG | - | chr2.4:37475669-37475688 | MS.gene68712:CDS | 35.0% |
| !!! | TACTTTTTGGGTTAGGATAC+TGG | - | chr2.4:37474738-37474757 | MS.gene68712:CDS | 35.0% |
| !!! | TTATTTTGTGTTGGTTGCAG+CGG | - | chr2.4:37475428-37475447 | MS.gene68712:CDS | 35.0% |
| ACCAATTCAACCCTTGATTC+GGG | - | chr2.4:37474548-37474567 | MS.gene68712:CDS | 40.0% | |
| CATATCAGAAATGAAACCGG+CGG | + | chr2.4:37475535-37475554 | None:intergenic | 40.0% | |
| GAATCAAGGGTTGAATTGGT+TGG | + | chr2.4:37474548-37474567 | None:intergenic | 40.0% | |
| GATATGGAATTCGCATACCT+CGG | - | chr2.4:37474895-37474914 | MS.gene68712:intron | 40.0% | |
| GCAGTTGTAATTAGCGAGTA+CGG | + | chr2.4:37475696-37475715 | None:intergenic | 40.0% | |
| GGTTTGATGTTCATGTGTTG+GGG | - | chr2.4:37474759-37474778 | MS.gene68712:CDS | 40.0% | |
| GTTGAATTGGTTGGAACTGT+GGG | + | chr2.4:37474539-37474558 | None:intergenic | 40.0% | |
| TTGTGAATCCCGTGGATATA+GGG | - | chr2.4:37475038-37475057 | MS.gene68712:intron | 40.0% | |
| TTGTTGCAGTTGTTGGGAAT+TGG | - | chr2.4:37474840-37474859 | MS.gene68712:CDS | 40.0% | |
| ! | ACTGCAATCATTGATGGTAC+TGG | - | chr2.4:37475780-37475799 | MS.gene68712:CDS | 40.0% |
| ! | AGTTATTGCTTCGGGTGTTT+TGG | - | chr2.4:37474937-37474956 | MS.gene68712:intron | 40.0% |
| ! | ATGTATTTGGCTGGTCATGT+TGG | - | chr2.4:37474653-37474672 | MS.gene68712:CDS | 40.0% |
| ! | CTGGTTTGATGTTCATGTGT+TGG | - | chr2.4:37474757-37474776 | MS.gene68712:CDS | 40.0% |
| ! | CTTGTGTTGTTGCAGTTGTT+GGG | - | chr2.4:37474834-37474853 | MS.gene68712:CDS | 40.0% |
| ! | GTGGAGTGTTTCAGTCAATT+GGG | - | chr2.4:37474807-37474826 | MS.gene68712:CDS | 40.0% |
| ! | TGCTTTTGTATCGTGCTTTC+GGG | - | chr2.4:37475610-37475629 | MS.gene68712:CDS | 40.0% |
| ! | TGTGGAGTGTTTCAGTCAAT+TGG | - | chr2.4:37474806-37474825 | MS.gene68712:CDS | 40.0% |
| ! | TTTCTTGTGTTTGGGATGGT+GGG | - | chr2.4:37474698-37474717 | MS.gene68712:CDS | 40.0% |
| !! | ATTGATGGTACTGGTTCTGT+TGG | - | chr2.4:37475789-37475808 | MS.gene68712:CDS | 40.0% |
| !! | CAAAGAGGGGATTGATAATG+GGG | - | chr2.4:37474873-37474892 | MS.gene68712:intron | 40.0% |
| !! | CTATTGGATTTTTAGAGGCG+TGG | - | chr2.4:37475188-37475207 | MS.gene68712:CDS | 40.0% |
| !! | CTGCTTTTGTATCGTGCTTT+CGG | - | chr2.4:37475609-37475628 | MS.gene68712:CDS | 40.0% |
| !! | GTTGTTTCTTGTGTTTGGGA+TGG | - | chr2.4:37474694-37474713 | MS.gene68712:CDS | 40.0% |
| !!! | CATGTGTTGGGGTTTTTTGT+CGG | - | chr2.4:37474770-37474789 | MS.gene68712:CDS | 40.0% |
| !!! | GGGTGTTTTGGAATTTGGAT+GGG | - | chr2.4:37474949-37474968 | MS.gene68712:intron | 40.0% |
| !!! | GGTGTTTTGGAATTTGGATG+GGG | - | chr2.4:37474950-37474969 | MS.gene68712:intron | 40.0% |
| !!! | TTTTGGAATTTGGATGGGGT+TGG | - | chr2.4:37474954-37474973 | MS.gene68712:intron | 40.0% |
| ACCAATGATATTCCCAACCG+AGG | + | chr2.4:37474915-37474934 | None:intergenic | 45.0% | |
| ACCAGCCAAATACATGCCAA+TGG | + | chr2.4:37474648-37474667 | None:intergenic | 45.0% | |
| ACCCGAATCAAGGGTTGAAT+TGG | + | chr2.4:37474552-37474571 | None:intergenic | 45.0% | |
| ACCTCGGTTGGGAATATCAT+TGG | - | chr2.4:37474911-37474930 | MS.gene68712:intron | 45.0% | |
| ACCTGTGTGCCTTATGTAGA+AGG | + | chr2.4:37475292-37475311 | None:intergenic | 45.0% | |
| ACTCGCAAACCCTATATCCA+CGG | + | chr2.4:37475050-37475069 | None:intergenic | 45.0% | |
| CCAACAACTGCAACAACACA+AGG | + | chr2.4:37474836-37474855 | None:intergenic | 45.0% | |
| CCTGTGTGCCTTATGTAGAA+GGG | + | chr2.4:37475291-37475310 | None:intergenic | 45.0% | |
| CTCGCTAATTACAACTGCTG+TGG | - | chr2.4:37475698-37475717 | MS.gene68712:CDS | 45.0% | |
| GAGTGTTTCAGTCAATTGGG+TGG | - | chr2.4:37474810-37474829 | MS.gene68712:CDS | 45.0% | |
| GGTTGAATTGGTTGGAACTG+TGG | + | chr2.4:37474540-37474559 | None:intergenic | 45.0% | |
| GTTGTGAATCCCGTGGATAT+AGG | - | chr2.4:37475037-37475056 | MS.gene68712:intron | 45.0% | |
| TCCATTGGCATGTATTTGGC+TGG | - | chr2.4:37474644-37474663 | MS.gene68712:CDS | 45.0% | |
| TCTGCAGAAAGTCGAATCAG+AGG | - | chr2.4:37475117-37475136 | MS.gene68712:CDS | 45.0% | |
| ! | CAGTTGTTGGGAATTGGCTT+GGG | - | chr2.4:37474846-37474865 | MS.gene68712:CDS | 45.0% |
| ! | CCTTGTGTTGTTGCAGTTGT+TGG | - | chr2.4:37474833-37474852 | MS.gene68712:CDS | 45.0% |
| ! | CTTTAGTGGTGGGAATTCTC+GGG | - | chr2.4:37475743-37475762 | MS.gene68712:CDS | 45.0% |
| ! | GCTTTAGTGGTGGGAATTCT+CGG | - | chr2.4:37475742-37475761 | MS.gene68712:CDS | 45.0% |
| ! | GTCGGTGTTCAGATTGTTTG+TGG | - | chr2.4:37474788-37474807 | MS.gene68712:CDS | 45.0% |
| ! | GTTTCTTGTGTTTGGGATGG+TGG | - | chr2.4:37474697-37474716 | MS.gene68712:CDS | 45.0% |
| ! | GTTTCTTGTTGTGAATCCCG+TGG | - | chr2.4:37475030-37475049 | MS.gene68712:intron | 45.0% |
| ! | TTAGAGGCGTGGAAAATACC+TGG | - | chr2.4:37475199-37475218 | MS.gene68712:CDS | 45.0% |
| !! | AGTTGTTGGGAATTGGCTTG+GGG | - | chr2.4:37474847-37474866 | MS.gene68712:CDS | 45.0% |
| !! | ATTCAACCCTTGATTCGGGT+TGG | - | chr2.4:37474552-37474571 | MS.gene68712:CDS | 45.0% |
| !! | ATTGGCTTGGGGAATCAAAG+AGG | - | chr2.4:37474858-37474877 | MS.gene68712:CDS | 45.0% |
| !! | GAAATGAGTGTTGAAACGGG+CGG | - | chr2.4:37475085-37475104 | MS.gene68712:intron | 45.0% |
| !! | GATATTGGAGGAGTTCTAGG+CGG | - | chr2.4:37475504-37475523 | MS.gene68712:CDS | 45.0% |
| !! | GGGGATTGATAATGGGGATA+TGG | - | chr2.4:37474879-37474898 | MS.gene68712:intron | 45.0% |
| !! | TTGGCTTGGGGAATCAAAGA+GGG | - | chr2.4:37474859-37474878 | MS.gene68712:CDS | 45.0% |
| !!! | CGGGTGTTTTGGAATTTGGA+TGG | - | chr2.4:37474948-37474967 | MS.gene68712:intron | 45.0% |
| !!! | GCTTCGGGTGTTTTGGAATT+TGG | - | chr2.4:37474944-37474963 | MS.gene68712:intron | 45.0% |
| CCCTTCTACATAAGGCACAC+AGG | - | chr2.4:37475288-37475307 | MS.gene68712:CDS | 50.0% | |
| CTCGCAAACCCTATATCCAC+GGG | + | chr2.4:37475049-37475068 | None:intergenic | 50.0% | |
| GATATAGGGTTTGCGAGTCC+TGG | - | chr2.4:37475052-37475071 | MS.gene68712:intron | 50.0% | |
| GCACGATACAAAAGCAGAGC+TGG | + | chr2.4:37475606-37475625 | None:intergenic | 50.0% | |
| GCAGTTGTTGGGAATTGGCT+TGG | - | chr2.4:37474845-37474864 | MS.gene68712:CDS | 50.0% | |
| GGAATTCGCATACCTCGGTT+GGG | - | chr2.4:37474900-37474919 | MS.gene68712:intron | 50.0% | |
| GTTCCCCGGGTTCCATTAAA+AGG | + | chr2.4:37474581-37474600 | None:intergenic | 50.0% | |
| TGGAATTCGCATACCTCGGT+TGG | - | chr2.4:37474899-37474918 | MS.gene68712:intron | 50.0% | |
| ! | TGGCTTGGGGAATCAAAGAG+GGG | - | chr2.4:37474860-37474879 | MS.gene68712:CDS | 50.0% |
| !! | GCTCTTGGACCACTTTTAGC+AGG | - | chr2.4:37475816-37475835 | MS.gene68712:CDS | 50.0% |
| !! | TGGCTGGTCATGTTGGTGAT+AGG | - | chr2.4:37474660-37474679 | MS.gene68712:CDS | 50.0% |
| AAAGCAAACGGAGCGACTCC+AGG | + | chr2.4:37475220-37475239 | None:intergenic | 55.0% | |
| AAAGCCCTGCGTACCGAGAT+CGG | + | chr2.4:37475727-37475746 | None:intergenic | 55.0% | |
| AGGGTTTGCGAGTCCTGGAA+TGG | - | chr2.4:37475057-37475076 | MS.gene68712:intron | 55.0% | |
| CCCCGGGTTCCATTAAAAGG+CGG | + | chr2.4:37474578-37474597 | None:intergenic | 55.0% | |
| GGTTCTGTTGGAGCTGCTCT+TGG | - | chr2.4:37475801-37475820 | MS.gene68712:CDS | 55.0% | |
| ! | CCGCCTTTTAATGGAACCCG+GGG | - | chr2.4:37474575-37474594 | MS.gene68712:CDS | 55.0% |
| ! | GCCGCCTTTTAATGGAACCC+GGG | - | chr2.4:37474574-37474593 | MS.gene68712:CDS | 55.0% |
| ! | GGCCGCCTTTTAATGGAACC+CGG | - | chr2.4:37474573-37474592 | MS.gene68712:CDS | 55.0% |
| ! | GTACGCAGGGCTTTAGTGGT+GGG | - | chr2.4:37475733-37475752 | MS.gene68712:CDS | 55.0% |
| !! | TGGATGGGGTTGGTCGTTTG+TGG | - | chr2.4:37474964-37474983 | MS.gene68712:intron | 55.0% |
| !!! | TCGGGTTGGCCGCCTTTTAA+TGG | - | chr2.4:37474566-37474585 | MS.gene68712:CDS | 55.0% |
| AAGGCGGCCAACCCGAATCA+AGG | + | chr2.4:37474562-37474581 | None:intergenic | 60.0% | |
| ACTGCTGTGGCTGCCGATCT+CGG | - | chr2.4:37475711-37475730 | MS.gene68712:CDS | 60.0% | |
| AGGCGGCCAACCCGAATCAA+GGG | + | chr2.4:37474561-37474580 | None:intergenic | 60.0% | |
| ATGGAACCCGGGGAACTCAC+CGG | - | chr2.4:37474585-37474604 | MS.gene68712:CDS | 60.0% | |
| CGAGATCAACCTCGCCAAGC+CGG | + | chr2.4:37474607-37474626 | None:intergenic | 60.0% | |
| TGGTGGGAATTCTCGGGCAC+TGG | - | chr2.4:37475749-37475768 | MS.gene68712:CDS | 60.0% | |
| TGTTGAAACGGGCGGTGCAG+AGG | - | chr2.4:37475093-37475112 | MS.gene68712:intron | 60.0% | |
| ! | CTCGGTACGCAGGGCTTTAG+TGG | - | chr2.4:37475729-37475748 | MS.gene68712:CDS | 60.0% |
| ! | GGTACGCAGGGCTTTAGTGG+TGG | - | chr2.4:37475732-37475751 | MS.gene68712:CDS | 60.0% |
| ! | GGTTGGTCGTTTGTGGTGCC+TGG | - | chr2.4:37474971-37474990 | MS.gene68712:intron | 60.0% |
| ! | GTTCTAGGCGGAATCACCGC+CGG | - | chr2.4:37475516-37475535 | MS.gene68712:CDS | 60.0% |
| !! | GTGTTGGTTGCAGCGGTTGC+TGG | - | chr2.4:37475435-37475454 | MS.gene68712:CDS | 60.0% |
| !! | GTGTTTGGGATGGTGGGCAG+CGG | - | chr2.4:37474704-37474723 | MS.gene68712:CDS | 60.0% |
| GCTGCCGATCTCGGTACGCA+GGG | - | chr2.4:37475720-37475739 | MS.gene68712:CDS | 65.0% | |
| CGCCAAGCCGGTGAGTTCCC+CGG | + | chr2.4:37474595-37474614 | None:intergenic | 70.0% | |
| GCCAAGCCGGTGAGTTCCCC+GGG | + | chr2.4:37474594-37474613 | None:intergenic | 70.0% | |
| GGCTGCCGATCTCGGTACGC+AGG | - | chr2.4:37475719-37475738 | MS.gene68712:CDS | 70.0% | |
| ! | ACCCGGGGAACTCACCGGCT+TGG | - | chr2.4:37474590-37474609 | MS.gene68712:CDS | 70.0% |
| !! | GGGAACTCACCGGCTTGGCG+AGG | - | chr2.4:37474595-37474614 | MS.gene68712:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 37474502 | 37475837 | 37474502 | ID=MS.gene68712 |
| chr2.4 | mRNA | 37474502 | 37475837 | 37474502 | ID=MS.gene68712.t1;Parent=MS.gene68712 |
| chr2.4 | exon | 37475109 | 37475837 | 37475109 | ID=MS.gene68712.t1.exon1;Parent=MS.gene68712.t1 |
| chr2.4 | CDS | 37475109 | 37475837 | 37475109 | ID=cds.MS.gene68712.t1;Parent=MS.gene68712.t1 |
| chr2.4 | exon | 37475030 | 37475037 | 37475030 | ID=MS.gene68712.t1.exon2;Parent=MS.gene68712.t1 |
| chr2.4 | CDS | 37475030 | 37475037 | 37475030 | ID=cds.MS.gene68712.t1;Parent=MS.gene68712.t1 |
| chr2.4 | exon | 37474502 | 37474891 | 37474502 | ID=MS.gene68712.t1.exon3;Parent=MS.gene68712.t1 |
| chr2.4 | CDS | 37474502 | 37474891 | 37474502 | ID=cds.MS.gene68712.t1;Parent=MS.gene68712.t1 |
| Gene Sequence |
| Protein sequence |
