Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77829.t1 | KEH41598.1 | 93.5 | 292 | 19 | 0 | 1 | 292 | 43 | 334 | 3.90E-166 | 594 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77829.t1 | A0A072VU01 | 93.5 | 292 | 19 | 0 | 1 | 292 | 43 | 334 | 2.8e-166 | 594.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene77829 | 0.839783 | 1.29E-57 | -1.69E-46 |
| MS.gene049549 | MS.gene77829 | 0.833337 | 5.65E-56 | -1.69E-46 |
| MS.gene049805 | MS.gene77829 | -0.808398 | 3.16E-50 | -1.69E-46 |
| MS.gene050095 | MS.gene77829 | 0.800638 | 1.31E-48 | -1.69E-46 |
| MS.gene050096 | MS.gene77829 | 0.801629 | 8.23E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene77829 | -0.804256 | 2.36E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene77829 | 0.808828 | 2.56E-50 | -1.69E-46 |
| MS.gene051131 | MS.gene77829 | 0.82186 | 3.23E-53 | -1.69E-46 |
| MS.gene051138 | MS.gene77829 | 0.80664 | 7.46E-50 | -1.69E-46 |
| MS.gene051632 | MS.gene77829 | 0.832427 | 9.51E-56 | -1.69E-46 |
| MS.gene051874 | MS.gene77829 | -0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene77829 | 0.830797 | 2.40E-55 | -1.69E-46 |
| MS.gene05240 | MS.gene77829 | 0.849202 | 3.76E-60 | -1.69E-46 |
| MS.gene052606 | MS.gene77829 | 0.819177 | 1.33E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene77829 | -0.806292 | 8.83E-50 | -1.69E-46 |
| MS.gene052702 | MS.gene77829 | 0.822098 | 2.84E-53 | -1.69E-46 |
| MS.gene052805 | MS.gene77829 | 0.810429 | 1.16E-50 | -1.69E-46 |
| MS.gene053030 | MS.gene77829 | 0.836414 | 9.49E-57 | -1.69E-46 |
| MS.gene053031 | MS.gene77829 | 0.813593 | 2.37E-51 | -1.69E-46 |
| MS.gene053033 | MS.gene77829 | 0.84172 | 4.01E-58 | -1.69E-46 |
| MS.gene053406 | MS.gene77829 | 0.819895 | 9.13E-53 | -1.69E-46 |
| MS.gene053488 | MS.gene77829 | 0.813252 | 2.81E-51 | -1.69E-46 |
| MS.gene053887 | MS.gene77829 | 0.808069 | 3.71E-50 | -1.69E-46 |
| MS.gene054146 | MS.gene77829 | 0.836883 | 7.21E-57 | -1.69E-46 |
| MS.gene054181 | MS.gene77829 | 0.812447 | 4.22E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene77829 | 0.827847 | 1.25E-54 | -1.69E-46 |
| MS.gene054290 | MS.gene77829 | 0.816827 | 4.52E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene77829 | 0.833657 | 4.70E-56 | -1.69E-46 |
| MS.gene05483 | MS.gene77829 | 0.808762 | 2.64E-50 | -1.69E-46 |
| MS.gene054884 | MS.gene77829 | 0.806359 | 8.55E-50 | -1.69E-46 |
| MS.gene055240 | MS.gene77829 | 0.808031 | 3.78E-50 | -1.69E-46 |
| MS.gene055741 | MS.gene77829 | -0.806396 | 8.39E-50 | -1.69E-46 |
| MS.gene055744 | MS.gene77829 | -0.806818 | 6.84E-50 | -1.69E-46 |
| MS.gene056590 | MS.gene77829 | 0.842608 | 2.33E-58 | -1.69E-46 |
| MS.gene056591 | MS.gene77829 | 0.842939 | 1.90E-58 | -1.69E-46 |
| MS.gene056688 | MS.gene77829 | 0.810013 | 1.42E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene77829 | 0.830032 | 3.69E-55 | -1.69E-46 |
| MS.gene056748 | MS.gene77829 | 0.806968 | 6.36E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene77829 | 0.810568 | 1.08E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene77829 | 0.826948 | 2.05E-54 | -1.69E-46 |
| MS.gene057086 | MS.gene77829 | -0.80325 | 3.81E-49 | -1.69E-46 |
| MS.gene057261 | MS.gene77829 | 0.825742 | 3.97E-54 | -1.69E-46 |
| MS.gene057544 | MS.gene77829 | 0.851979 | 6.23E-61 | -1.69E-46 |
| MS.gene057547 | MS.gene77829 | 0.832463 | 9.32E-56 | -1.69E-46 |
| MS.gene057548 | MS.gene77829 | 0.801416 | 9.10E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene77829 | 0.801638 | 8.19E-49 | -1.69E-46 |
| MS.gene058177 | MS.gene77829 | 0.809959 | 1.46E-50 | -1.69E-46 |
| MS.gene058334 | MS.gene77829 | 0.804703 | 1.90E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene77829 | -0.802375 | 5.78E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene77829 | 0.809553 | 1.79E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene77829 | -0.808218 | 3.45E-50 | -1.69E-46 |
| MS.gene059402 | MS.gene77829 | 0.816398 | 5.65E-52 | -1.69E-46 |
| MS.gene059953 | MS.gene77829 | 0.835223 | 1.90E-56 | -1.69E-46 |
| MS.gene059955 | MS.gene77829 | 0.834148 | 3.54E-56 | -1.69E-46 |
| MS.gene060087 | MS.gene77829 | 0.826221 | 3.05E-54 | -1.69E-46 |
| MS.gene060593 | MS.gene77829 | 0.813286 | 2.76E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene77829 | -0.81772 | 2.85E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77829.t1 | MTR_1g052640 | 93.493 | 292 | 19 | 0 | 1 | 292 | 43 | 334 | 0.0 | 577 |
| MS.gene77829.t1 | MTR_1g052640 | 93.493 | 292 | 19 | 0 | 1 | 292 | 43 | 334 | 0.0 | 577 |
| MS.gene77829.t1 | MTR_0083s0100 | 87.671 | 292 | 36 | 0 | 1 | 292 | 43 | 334 | 0.0 | 554 |
| MS.gene77829.t1 | MTR_1g052640 | 94.606 | 241 | 13 | 0 | 1 | 241 | 43 | 283 | 7.09e-175 | 484 |
| MS.gene77829.t1 | MTR_2g030470 | 79.452 | 292 | 59 | 1 | 1 | 292 | 458 | 748 | 3.43e-173 | 500 |
| MS.gene77829.t1 | MTR_2g030470 | 76.027 | 292 | 69 | 1 | 1 | 292 | 46 | 336 | 6.98e-164 | 476 |
| MS.gene77829.t1 | MTR_2g030480 | 72.945 | 292 | 58 | 2 | 1 | 292 | 43 | 313 | 6.29e-160 | 451 |
| MS.gene77829.t1 | MTR_2g030460 | 68.942 | 293 | 89 | 2 | 1 | 292 | 43 | 334 | 1.05e-158 | 445 |
| MS.gene77829.t1 | MTR_2g030460 | 68.942 | 293 | 89 | 2 | 1 | 292 | 43 | 334 | 1.19e-157 | 446 |
| MS.gene77829.t1 | MTR_4g094555 | 61.667 | 300 | 106 | 2 | 1 | 292 | 40 | 338 | 1.23e-140 | 403 |
| MS.gene77829.t1 | MTR_4g094560 | 61.986 | 292 | 108 | 2 | 1 | 292 | 40 | 328 | 1.83e-140 | 402 |
| MS.gene77829.t1 | MTR_4g094550 | 60.667 | 300 | 109 | 2 | 1 | 292 | 41 | 339 | 5.08e-137 | 394 |
| MS.gene77829.t1 | MTR_6g048310 | 60.201 | 299 | 111 | 3 | 1 | 292 | 39 | 336 | 7.33e-137 | 393 |
| MS.gene77829.t1 | MTR_4g094570 | 60.000 | 300 | 111 | 2 | 1 | 292 | 40 | 338 | 1.86e-136 | 393 |
| MS.gene77829.t1 | MTR_4g094562 | 59.333 | 300 | 113 | 2 | 1 | 292 | 40 | 338 | 5.00e-136 | 391 |
| MS.gene77829.t1 | MTR_4g094548 | 58.472 | 301 | 115 | 2 | 1 | 292 | 41 | 340 | 2.73e-134 | 387 |
| MS.gene77829.t1 | MTR_6g048350 | 59.000 | 300 | 114 | 2 | 1 | 292 | 40 | 338 | 4.60e-134 | 387 |
| MS.gene77829.t1 | MTR_4g094562 | 59.274 | 248 | 92 | 2 | 1 | 240 | 40 | 286 | 8.79e-111 | 323 |
| MS.gene77829.t1 | MTR_4g094565 | 54.772 | 241 | 86 | 3 | 1 | 240 | 40 | 258 | 3.89e-91 | 273 |
| MS.gene77829.t1 | MTR_4g094565 | 54.583 | 240 | 86 | 3 | 1 | 239 | 40 | 257 | 1.95e-90 | 273 |
| MS.gene77829.t1 | MTR_8g039300 | 41.042 | 307 | 155 | 7 | 1 | 292 | 38 | 333 | 2.66e-86 | 264 |
| MS.gene77829.t1 | MTR_6g089930 | 40.065 | 307 | 158 | 7 | 1 | 292 | 38 | 333 | 3.17e-85 | 261 |
| MS.gene77829.t1 | MTR_6g090090 | 42.345 | 307 | 141 | 8 | 1 | 292 | 64 | 349 | 1.36e-84 | 260 |
| MS.gene77829.t1 | MTR_3g035040 | 39.739 | 307 | 159 | 7 | 1 | 292 | 38 | 333 | 1.16e-80 | 249 |
| MS.gene77829.t1 | MTR_1g035220 | 39.414 | 307 | 139 | 8 | 1 | 292 | 38 | 312 | 1.40e-71 | 225 |
| MS.gene77829.t1 | MTR_1g062750 | 43.277 | 238 | 115 | 6 | 19 | 241 | 2 | 234 | 3.69e-64 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77829.t1 | AT5G61820 | 52.077 | 313 | 121 | 6 | 2 | 292 | 41 | 346 | 3.42e-110 | 327 |
| MS.gene77829.t1 | AT5G61820 | 52.077 | 313 | 121 | 6 | 2 | 292 | 41 | 346 | 3.42e-110 | 327 |
Find 64 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATACCTGATTGGCTATT+TGG | 0.105184 | 1.4:+42787768 | None:intergenic |
| CAATTGGGATGTTAACTTTA+TGG | 0.150822 | 1.4:-42787361 | MS.gene77829:CDS |
| CATTTCTCCACATACCCTTT+TGG | 0.274775 | 1.4:+42787612 | None:intergenic |
| GCAATTGGATCAACTCTATA+TGG | 0.301761 | 1.4:-42786915 | MS.gene77829:CDS |
| ATCTTGCACTTGCTATTATC+AGG | 0.317724 | 1.4:+42787444 | None:intergenic |
| AACAGTGTATTTCAAATAGA+TGG | 0.319094 | 1.4:+42787392 | None:intergenic |
| TCCTGGATTTAGTTCAATCT+TGG | 0.319107 | 1.4:+42787959 | None:intergenic |
| ACACTGTTACGTGGATCAAT+TGG | 0.329353 | 1.4:-42787377 | MS.gene77829:CDS |
| GCTTTGAGTCCAAATTATAA+AGG | 0.356541 | 1.4:-42787483 | MS.gene77829:CDS |
| TTAGGACAATACTATGGTCT+TGG | 0.372734 | 1.4:-42787708 | MS.gene77829:CDS |
| TTAAGAAAATAATACCTGAT+TGG | 0.381244 | 1.4:+42787760 | None:intergenic |
| GCGAGCTTCCCAATGCAAAA+TGG | 0.381323 | 1.4:-42786978 | MS.gene77829:CDS |
| AATGGAGGTTATGTCATCTA+TGG | 0.382620 | 1.4:-42786960 | MS.gene77829:CDS |
| ACATATATTCCAGACCCTTA+TGG | 0.385689 | 1.4:-42787663 | MS.gene77829:CDS |
| CTTTGAGTCCAAATTATAAA+GGG | 0.386608 | 1.4:-42787482 | MS.gene77829:CDS |
| AATGTAACAAAAGATGAAAA+TGG | 0.403395 | 1.4:-42787510 | MS.gene77829:CDS |
| ACTTTATTTGAAACAAATCC+TGG | 0.406209 | 1.4:+42787942 | None:intergenic |
| CCTGGATTTAGTTCAATCTT+GGG | 0.408000 | 1.4:+42787960 | None:intergenic |
| CATCTACATACAGGTGCAAT+TGG | 0.410018 | 1.4:-42786930 | MS.gene77829:CDS |
| CAAAAGGGTATGTGGAGAAA+TGG | 0.410394 | 1.4:-42787611 | MS.gene77829:CDS |
| GTGACACCAAATAGCCAATC+AGG | 0.433825 | 1.4:-42787774 | MS.gene77829:CDS |
| ATCAAACTTATCTACACCAT+TGG | 0.445662 | 1.4:-42787827 | MS.gene77829:CDS |
| TTGAGTGAAATATGACCTCT+TGG | 0.446302 | 1.4:+42787900 | None:intergenic |
| AATGGTGTAGATAAGTTTGA+TGG | 0.446934 | 1.4:+42787829 | None:intergenic |
| TACGAGGGGTGTGGATGATC+GGG | 0.452472 | 1.4:-42787565 | MS.gene77829:CDS |
| TTACCAACTTCTATACCATA+AGG | 0.456109 | 1.4:+42787648 | None:intergenic |
| CACTGTTACGTGGATCAATT+GGG | 0.464348 | 1.4:-42787376 | MS.gene77829:CDS |
| CCCAAGATTGAACTAAATCC+AGG | 0.471202 | 1.4:-42787960 | MS.gene77829:CDS |
| AATCCTGCTGAAATTCCAAA+AGG | 0.472130 | 1.4:-42787627 | MS.gene77829:CDS |
| ATACGAGGGGTGTGGATGAT+CGG | 0.480331 | 1.4:-42787566 | MS.gene77829:CDS |
| GACCCTTATGGTATAGAAGT+TGG | 0.491257 | 1.4:-42787651 | MS.gene77829:CDS |
| TCAAACTTATCTACACCATT+GGG | 0.498383 | 1.4:-42787826 | MS.gene77829:CDS |
| TCAAATATATAAACGTTGAC+CGG | 0.504839 | 1.4:+42787336 | None:intergenic |
| GGATGTTAACTTTATGGTGC+CGG | 0.509600 | 1.4:-42787355 | MS.gene77829:CDS |
| AAGCTATCGGATAAGTCTAA+AGG | 0.510457 | 1.4:-42787297 | MS.gene77829:CDS |
| ACTTCTATACCATAAGGGTC+TGG | 0.525886 | 1.4:+42787654 | None:intergenic |
| TACCAACTTCTATACCATAA+GGG | 0.529409 | 1.4:+42787649 | None:intergenic |
| GGAGTTGGTCATCTACATAC+AGG | 0.539806 | 1.4:-42786939 | MS.gene77829:CDS |
| TGGATCAACTCTATATGGAC+AGG | 0.540193 | 1.4:-42786910 | None:intergenic |
| ATTGTCCTAAAACATCCTCT+TGG | 0.543744 | 1.4:+42787721 | None:intergenic |
| GCTGAGCTAGTTGATGATGC+AGG | 0.547375 | 1.4:-42787867 | MS.gene77829:CDS |
| GGTTATGTCATCTATGGAGT+TGG | 0.568181 | 1.4:-42786954 | MS.gene77829:CDS |
| GACTGATACTTTGAAGCTAT+CGG | 0.573866 | 1.4:-42787310 | MS.gene77829:CDS |
| AGCAAGTGCAAGATGAGGAA+AGG | 0.579934 | 1.4:-42787435 | MS.gene77829:CDS |
| ATCCTGCTGAAATTCCAAAA+GGG | 0.582436 | 1.4:-42787626 | MS.gene77829:CDS |
| GAGGGGTGTGGATGATCGGG+TGG | 0.585742 | 1.4:-42787562 | MS.gene77829:CDS |
| TGTAGATAAGTTTGATGGAG+AGG | 0.591197 | 1.4:+42787834 | None:intergenic |
| GAGTATCAAGCATGATTGCA+AGG | 0.597085 | 1.4:-42787271 | MS.gene77829:intron |
| TGCAATTGATACGAGGGGTG+TGG | 0.598035 | 1.4:-42787574 | MS.gene77829:CDS |
| TGAAATTCCAAAAGGGTATG+TGG | 0.598204 | 1.4:-42787619 | MS.gene77829:CDS |
| TTGAGTCCAAATTATAAAGG+GGG | 0.598573 | 1.4:-42787480 | MS.gene77829:CDS |
| AAAAGTAATGTGAGTGATAG+CGG | 0.599635 | 1.4:-42787020 | MS.gene77829:CDS |
| AGGGGTGTGGATGATCGGGT+GGG | 0.600563 | 1.4:-42787561 | MS.gene77829:CDS |
| TTTGAGTCCAAATTATAAAG+GGG | 0.613614 | 1.4:-42787481 | MS.gene77829:CDS |
| ACAATACTATGGTCTTGGAT+CGG | 0.617680 | 1.4:-42787703 | MS.gene77829:CDS |
| TGTTCATGCAATTGATACGA+GGG | 0.617695 | 1.4:-42787580 | MS.gene77829:CDS |
| CTGAGCTAGTTGATGATGCA+GGG | 0.637972 | 1.4:-42787866 | MS.gene77829:CDS |
| TATGATGTTGAGTTTCCAAG+AGG | 0.638000 | 1.4:-42787915 | MS.gene77829:CDS |
| ATAATAGCAAGTGCAAGATG+AGG | 0.647427 | 1.4:-42787440 | MS.gene77829:CDS |
| AGCTTCCCAATGCAAAATGG+AGG | 0.656715 | 1.4:-42786975 | MS.gene77829:CDS |
| AGTATCTTATAACAACCCAA+TGG | 0.662577 | 1.4:+42787811 | None:intergenic |
| ATTTGAAATACACTGTTACG+TGG | 0.664226 | 1.4:-42787386 | MS.gene77829:CDS |
| ATGTTCATGCAATTGATACG+AGG | 0.665580 | 1.4:-42787581 | MS.gene77829:CDS |
| GTTCATGCAATTGATACGAG+GGG | 0.696381 | 1.4:-42787579 | MS.gene77829:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTCTTAAGAAATGA+TGG | - | chr1.4:42787127-42787146 | MS.gene77829:intron | 15.0% |
| !! | AATGTAACAAAAGATGAAAA+TGG | - | chr1.4:42787367-42787386 | MS.gene77829:CDS | 20.0% |
| !! | AGAGATTATTCTTTAAATAC+AGG | - | chr1.4:42787808-42787827 | MS.gene77829:CDS | 20.0% |
| !! | TTAAGAAAATAATACCTGAT+TGG | + | chr1.4:42787120-42787139 | None:intergenic | 20.0% |
| !!! | TAAATTTGAGATCATTAAGT+AGG | + | chr1.4:42787711-42787730 | None:intergenic | 20.0% |
| !!! | TCAAATAGATGGTTTTTTTT+GGG | + | chr1.4:42787477-42787496 | None:intergenic | 20.0% |
| !!! | TTATTGTTTTACATAGTCTA+TGG | - | chr1.4:42787671-42787690 | MS.gene77829:CDS | 20.0% |
| !!! | TTCAAATAGATGGTTTTTTT+TGG | + | chr1.4:42787478-42787497 | None:intergenic | 20.0% |
| ! | AACAGTGTATTTCAAATAGA+TGG | + | chr1.4:42787488-42787507 | None:intergenic | 25.0% |
| ! | CTTTGAGTCCAAATTATAAA+GGG | - | chr1.4:42787395-42787414 | MS.gene77829:CDS | 25.0% |
| ! | TCAAATATATAAACGTTGAC+CGG | + | chr1.4:42787544-42787563 | None:intergenic | 25.0% |
| ! | TTTGAGTCCAAATTATAAAG+GGG | - | chr1.4:42787396-42787415 | MS.gene77829:CDS | 25.0% |
| !! | ACTTTATTTGAAACAAATCC+TGG | + | chr1.4:42786938-42786957 | None:intergenic | 25.0% |
| !! | CATCTTTTGTTACATTGTAT+AGG | + | chr1.4:42787363-42787382 | None:intergenic | 25.0% |
| AAAAGTAATGTGAGTGATAG+CGG | - | chr1.4:42787857-42787876 | MS.gene77829:CDS | 30.0% | |
| AATGGTGTAGATAAGTTTGA+TGG | + | chr1.4:42787051-42787070 | None:intergenic | 30.0% | |
| AGTATCTTATAACAACCCAA+TGG | + | chr1.4:42787069-42787088 | None:intergenic | 30.0% | |
| ATCAAACTTATCTACACCAT+TGG | - | chr1.4:42787050-42787069 | MS.gene77829:CDS | 30.0% | |
| CAATTGGGATGTTAACTTTA+TGG | - | chr1.4:42787516-42787535 | MS.gene77829:CDS | 30.0% | |
| TACCAACTTCTATACCATAA+GGG | + | chr1.4:42787231-42787250 | None:intergenic | 30.0% | |
| TCAAACTTATCTACACCATT+GGG | - | chr1.4:42787051-42787070 | MS.gene77829:intron | 30.0% | |
| TTACCAACTTCTATACCATA+AGG | + | chr1.4:42787232-42787251 | None:intergenic | 30.0% | |
| TTGAGTCCAAATTATAAAGG+GGG | - | chr1.4:42787397-42787416 | MS.gene77829:CDS | 30.0% | |
| ! | AAGATGAGGAAAGGATTTTT+AGG | - | chr1.4:42787451-42787470 | MS.gene77829:CDS | 30.0% |
| ! | ATAATACCTGATTGGCTATT+TGG | + | chr1.4:42787112-42787131 | None:intergenic | 30.0% |
| ! | ATTTGAAATACACTGTTACG+TGG | - | chr1.4:42787491-42787510 | MS.gene77829:CDS | 30.0% |
| ! | GCTTTGAGTCCAAATTATAA+AGG | - | chr1.4:42787394-42787413 | MS.gene77829:CDS | 30.0% |
| !!! | CTATTTGGTGTCACATTTTT+AGG | + | chr1.4:42787097-42787116 | None:intergenic | 30.0% |
| !!! | GATGTTTTAGGACAATACTA+TGG | - | chr1.4:42787163-42787182 | MS.gene77829:intron | 30.0% |
| AAGCTATCGGATAAGTCTAA+AGG | - | chr1.4:42787580-42787599 | MS.gene77829:CDS | 35.0% | |
| AATCCTGCTGAAATTCCAAA+AGG | - | chr1.4:42787250-42787269 | MS.gene77829:intron | 35.0% | |
| AATGGAGGTTATGTCATCTA+TGG | - | chr1.4:42787917-42787936 | MS.gene77829:CDS | 35.0% | |
| ACATATATTCCAGACCCTTA+TGG | - | chr1.4:42787214-42787233 | MS.gene77829:intron | 35.0% | |
| ATAATAGCAAGTGCAAGATG+AGG | - | chr1.4:42787437-42787456 | MS.gene77829:CDS | 35.0% | |
| ATCCTGCTGAAATTCCAAAA+GGG | - | chr1.4:42787251-42787270 | MS.gene77829:intron | 35.0% | |
| ATGTTCATGCAATTGATACG+AGG | - | chr1.4:42787296-42787315 | MS.gene77829:CDS | 35.0% | |
| ATTGTCCTAAAACATCCTCT+TGG | + | chr1.4:42787159-42787178 | None:intergenic | 35.0% | |
| GCAATTGGATCAACTCTATA+TGG | - | chr1.4:42787962-42787981 | MS.gene77829:CDS | 35.0% | |
| TATGATGTTGAGTTTCCAAG+AGG | - | chr1.4:42786962-42786981 | MS.gene77829:CDS | 35.0% | |
| TGCAAACCCCCTTTATAATT+TGG | + | chr1.4:42787406-42787425 | None:intergenic | 35.0% | |
| TGTAGATAAGTTTGATGGAG+AGG | + | chr1.4:42787046-42787065 | None:intergenic | 35.0% | |
| TGTTCATGCAATTGATACGA+GGG | - | chr1.4:42787297-42787316 | MS.gene77829:CDS | 35.0% | |
| TTAGGACAATACTATGGTCT+TGG | - | chr1.4:42787169-42787188 | MS.gene77829:intron | 35.0% | |
| TTGAGTGAAATATGACCTCT+TGG | + | chr1.4:42786980-42786999 | None:intergenic | 35.0% | |
| ! | ACAATACTATGGTCTTGGAT+CGG | - | chr1.4:42787174-42787193 | MS.gene77829:intron | 35.0% |
| ! | ACATAACCTCCATTTTGCAT+TGG | + | chr1.4:42787911-42787930 | None:intergenic | 35.0% |
| ! | CATAACCTCCATTTTGCATT+GGG | + | chr1.4:42787910-42787929 | None:intergenic | 35.0% |
| ! | CCTGGATTTAGTTCAATCTT+GGG | + | chr1.4:42786920-42786939 | None:intergenic | 35.0% |
| ! | TCCTGGATTTAGTTCAATCT+TGG | + | chr1.4:42786921-42786940 | None:intergenic | 35.0% |
| ! | TGAAATTCCAAAAGGGTATG+TGG | - | chr1.4:42787258-42787277 | MS.gene77829:intron | 35.0% |
| ! | TTTTGCCAAGAGGATGTTTT+AGG | - | chr1.4:42787151-42787170 | MS.gene77829:intron | 35.0% |
| !! | ATCTTGCACTTGCTATTATC+AGG | + | chr1.4:42787436-42787455 | None:intergenic | 35.0% |
| !! | GACTGATACTTTGAAGCTAT+CGG | - | chr1.4:42787567-42787586 | MS.gene77829:CDS | 35.0% |
| !!! | TTGGTGTCACATTTTTAGGT+TGG | + | chr1.4:42787093-42787112 | None:intergenic | 35.0% |
| ACACTGTTACGTGGATCAAT+TGG | - | chr1.4:42787500-42787519 | MS.gene77829:CDS | 40.0% | |
| ACTTCTATACCATAAGGGTC+TGG | + | chr1.4:42787226-42787245 | None:intergenic | 40.0% | |
| CACTGTTACGTGGATCAATT+GGG | - | chr1.4:42787501-42787520 | MS.gene77829:CDS | 40.0% | |
| CATCTACATACAGGTGCAAT+TGG | - | chr1.4:42787947-42787966 | MS.gene77829:CDS | 40.0% | |
| CCCAAGATTGAACTAAATCC+AGG | - | chr1.4:42786917-42786936 | MS.gene77829:CDS | 40.0% | |
| GACCCTTATGGTATAGAAGT+TGG | - | chr1.4:42787226-42787245 | MS.gene77829:intron | 40.0% | |
| GAGTATCAAGCATGATTGCA+AGG | - | chr1.4:42787606-42787625 | MS.gene77829:CDS | 40.0% | |
| GGATGTTAACTTTATGGTGC+CGG | - | chr1.4:42787522-42787541 | MS.gene77829:CDS | 40.0% | |
| GGTTATGTCATCTATGGAGT+TGG | - | chr1.4:42787923-42787942 | MS.gene77829:CDS | 40.0% | |
| GTTCATGCAATTGATACGAG+GGG | - | chr1.4:42787298-42787317 | MS.gene77829:CDS | 40.0% | |
| ! | AAATGATGGCTTTTGCCAAG+AGG | - | chr1.4:42787141-42787160 | MS.gene77829:intron | 40.0% |
| ! | CAAAAGGGTATGTGGAGAAA+TGG | - | chr1.4:42787266-42787285 | MS.gene77829:intron | 40.0% |
| ! | CATTTCTCCACATACCCTTT+TGG | + | chr1.4:42787268-42787287 | None:intergenic | 40.0% |
| !! | CTCACATTACTTTTGCTGCA+TGG | + | chr1.4:42787851-42787870 | None:intergenic | 40.0% |
| !!! | TACCCTTTTGGAATTTCAGC+AGG | + | chr1.4:42787256-42787275 | None:intergenic | 40.0% |
| AGCAAGTGCAAGATGAGGAA+AGG | - | chr1.4:42787442-42787461 | MS.gene77829:CDS | 45.0% | |
| AGCTTCCCAATGCAAAATGG+AGG | - | chr1.4:42787902-42787921 | MS.gene77829:CDS | 45.0% | |
| GTGACACCAAATAGCCAATC+AGG | - | chr1.4:42787103-42787122 | MS.gene77829:intron | 45.0% | |
| ! | GGAGTTGGTCATCTACATAC+AGG | - | chr1.4:42787938-42787957 | MS.gene77829:CDS | 45.0% |
| !! | CTGAGCTAGTTGATGATGCA+GGG | - | chr1.4:42787011-42787030 | MS.gene77829:CDS | 45.0% |
| GCGAGCTTCCCAATGCAAAA+TGG | - | chr1.4:42787899-42787918 | MS.gene77829:CDS | 50.0% | |
| TGCAATTGATACGAGGGGTG+TGG | - | chr1.4:42787303-42787322 | MS.gene77829:CDS | 50.0% | |
| ! | ATACGAGGGGTGTGGATGAT+CGG | - | chr1.4:42787311-42787330 | MS.gene77829:CDS | 50.0% |
| !! | GCTGAGCTAGTTGATGATGC+AGG | - | chr1.4:42787010-42787029 | MS.gene77829:CDS | 50.0% |
| ! | TACGAGGGGTGTGGATGATC+GGG | - | chr1.4:42787312-42787331 | MS.gene77829:CDS | 55.0% |
| ! | AGGGGTGTGGATGATCGGGT+GGG | - | chr1.4:42787316-42787335 | MS.gene77829:CDS | 60.0% |
| ! | GAGGGGTGTGGATGATCGGG+TGG | - | chr1.4:42787315-42787334 | MS.gene77829:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 42786911 | 42787988 | 42786911 | ID=MS.gene77829 |
| chr1.4 | mRNA | 42786911 | 42787988 | 42786911 | ID=MS.gene77829.t1;Parent=MS.gene77829 |
| chr1.4 | exon | 42787272 | 42787988 | 42787272 | ID=MS.gene77829.t1.exon1;Parent=MS.gene77829.t1 |
| chr1.4 | CDS | 42787272 | 42787988 | 42787272 | ID=cds.MS.gene77829.t1;Parent=MS.gene77829.t1 |
| chr1.4 | exon | 42786911 | 42787069 | 42786911 | ID=MS.gene77829.t1.exon2;Parent=MS.gene77829.t1 |
| chr1.4 | CDS | 42786911 | 42787069 | 42786911 | ID=cds.MS.gene77829.t1;Parent=MS.gene77829.t1 |
| Gene Sequence |
| Protein sequence |
