AlfalfaGEDB | MS.gene053030

M. sativa cultivar XinJiangDaYe / MS.gene053030

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030145 GO:0043167 GO:0043169 GO:0045735 GO:0046872 GO:0046914
PFAM: PF00190.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053030.t1	XP_003618164.1	96.7	181	6	0	6	186	40	220	8.60E-95	356.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053030.t1	Q6K5Q0	69.7	178	52	1	6	181	39	216	4.4e-63	242.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053030.t1	G7KQ17	96.7	181	6	0	6	186	40	220	6.2e-95	356.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053027	MS.gene053030	0.81569	8.12E-52	-1.69E-46
MS.gene053030	MS.gene053031	0.845752	3.34E-59	-1.69E-46
MS.gene053030	MS.gene053033	0.854561	1.13E-61	-1.69E-46
MS.gene053030	MS.gene057547	0.806518	7.91E-50	-1.69E-46
MS.gene053030	MS.gene064313	0.800937	1.14E-48	-1.69E-46
MS.gene053030	MS.gene066602	0.803797	2.94E-49	-1.69E-46
MS.gene053030	MS.gene069482	0.832493	9.16E-56	-1.69E-46
MS.gene053030	MS.gene08733	0.806104	9.67E-50	-1.69E-46
MS.gene053030	MS.gene35597	0.815451	9.18E-52	-1.69E-46
MS.gene053030	MS.gene37747	0.811959	5.39E-51	-1.69E-46
MS.gene053030	MS.gene38435	0.802254	6.12E-49	-1.69E-46
MS.gene053030	MS.gene40172	0.810841	9.43E-51	-1.69E-46
MS.gene053030	MS.gene42080	0.830034	3.69E-55	-1.69E-46
MS.gene053030	MS.gene43874	0.8039	2.79E-49	-1.69E-46
MS.gene053030	MS.gene48805	0.841399	4.87E-58	-1.69E-46
MS.gene053030	MS.gene48806	0.832983	6.92E-56	-1.69E-46
MS.gene053030	MS.gene48807	0.813157	2.95E-51	-1.69E-46
MS.gene053030	MS.gene50789	0.808245	3.40E-50	-1.69E-46
MS.gene053030	MS.gene51523	0.801317	9.53E-49	-1.69E-46
MS.gene053030	MS.gene52370	0.827399	1.60E-54	-1.69E-46
MS.gene053030	MS.gene54029	0.825155	5.47E-54	-1.69E-46
MS.gene053030	MS.gene54347	0.820921	5.31E-53	-1.69E-46
MS.gene053030	MS.gene56375	0.806585	7.66E-50	-1.69E-46
MS.gene053030	MS.gene56384	0.814144	1.79E-51	-1.69E-46
MS.gene053030	MS.gene62222	0.801399	9.17E-49	-1.69E-46
MS.gene053030	MS.gene63914	0.80913	2.20E-50	-1.69E-46
MS.gene053030	MS.gene64397	0.801681	8.03E-49	-1.69E-46
MS.gene053030	MS.gene66234	0.802502	5.44E-49	-1.69E-46
MS.gene053030	MS.gene69966	0.818044	2.41E-52	-1.69E-46
MS.gene053030	MS.gene70061	0.811354	7.30E-51	-1.69E-46
MS.gene053030	MS.gene72073	0.81301	3.18E-51	-1.69E-46
MS.gene053030	MS.gene74774	0.808674	2.76E-50	-1.69E-46
MS.gene053030	MS.gene76737	0.825723	4.01E-54	-1.69E-46
MS.gene053030	MS.gene76738	0.834714	2.56E-56	-1.69E-46
MS.gene053030	MS.gene77032	0.815698	8.09E-52	-1.69E-46
MS.gene053030	MS.gene77033	0.801597	8.35E-49	-1.69E-46
MS.gene053030	MS.gene77829	0.836414	9.49E-57	-1.69E-46
MS.gene053030	MS.gene79624	0.810416	1.17E-50	-1.69E-46
MS.gene053030	MS.gene82244	0.813402	2.61E-51	-1.69E-46
MS.gene053030	MS.gene82245	0.82015	7.98E-53	-1.69E-46
MS.gene053030	MS.gene82855	0.806495	8.00E-50	-1.69E-46
MS.gene053030	MS.gene82857	0.800582	1.35E-48	-1.69E-46
MS.gene053030	MS.gene82858	0.820833	5.57E-53	-1.69E-46
MS.gene053030	MS.gene82860	0.870028	1.99E-66	-1.69E-46
MS.gene053030	MS.gene84225	0.83153	1.58E-55	-1.69E-46
MS.gene053030	MS.gene87056	0.807267	5.49E-50	-1.69E-46
MS.gene053030	MS.gene87750	0.835186	1.94E-56	-1.69E-46
MS.gene053030	MS.gene89774	0.835078	2.07E-56	-1.69E-46
MS.gene053030	MS.gene95804	0.814856	1.25E-51	-1.69E-46
MS.gene053030	MS.gene97125	0.815735	7.94E-52	-1.69E-46
MS.gene053030	MS.gene98322	0.822452	2.35E-53	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene053030	MS.gene053029	PPI
MS.gene053030	MS.gene047464	PPI
MS.gene053030	MS.gene89774	PPI
MS.gene053030	MS.gene82860	PPI
MS.gene053030	MS.gene053026	PPI
MS.gene053030	MS.gene032597	PPI
MS.gene053030	MS.gene70061	PPI
MS.gene89775	MS.gene053030	PPI
MS.gene053030	MS.gene82857	PPI
MS.gene053030	MS.gene037516	PPI
MS.gene82858	MS.gene053030	PPI
MS.gene037517	MS.gene053030	PPI
MS.gene053030	MS.gene037519	PPI
MS.gene053030	MS.gene70064	PPI
MS.gene053030	MS.gene005041	PPI
MS.gene053030	MS.gene82859	PPI
MS.gene053030	MS.gene82858	PPI
MS.gene053030	MS.gene037517	PPI
MS.gene053030	MS.gene70062	PPI
MS.gene032598	MS.gene053030	PPI
MS.gene89773	MS.gene053030	PPI
MS.gene053030	MS.gene50790	PPI
MS.gene053030	MS.gene96244	PPI
MS.gene053027	MS.gene053030	PPI
MS.gene70064	MS.gene053030	PPI
MS.gene74887	MS.gene053030	PPI
MS.gene053030	MS.gene50786	PPI
MS.gene053030	MS.gene053031	PPI
MS.gene053030	MS.gene89772	PPI
MS.gene032599	MS.gene053030	PPI
MS.gene053030	MS.gene70063	PPI
MS.gene053030	MS.gene07591	PPI
MS.gene053030	MS.gene037520	PPI
MS.gene053033	MS.gene053030	PPI
MS.gene053030	MS.gene004411	PPI
MS.gene053030	MS.gene82855	PPI
MS.gene053030	MS.gene032599	PPI
MS.gene053030	MS.gene002728	PPI
MS.gene053030	MS.gene032596	PPI
MS.gene053030	MS.gene50789	PPI
MS.gene053030	MS.gene037518	PPI
MS.gene053030	MS.gene50788	PPI
MS.gene032601	MS.gene053030	PPI
MS.gene053030	MS.gene50787	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053030.t1	MTR_6g005310	97.222	180	5	0	6	185	40	219	1.88e-126	355
MS.gene053030.t1	MTR_6g005330	96.685	181	6	0	6	186	40	220	2.64e-126	354
MS.gene053030.t1	MTR_6g005340	96.685	181	6	0	6	186	40	220	3.04e-126	354
MS.gene053030.t1	MTR_6g005360	96.685	181	6	0	6	186	40	220	4.51e-126	353
MS.gene053030.t1	MTR_1g079490	83.607	183	28	2	6	186	40	222	6.72e-107	305
MS.gene053030.t1	MTR_4g017040	80.769	182	34	1	6	186	40	221	2.43e-103	296
MS.gene053030.t1	MTR_2g019250	80.220	182	35	1	6	186	40	221	5.90e-103	295
MS.gene053030.t1	MTR_4g017050	80.220	182	35	1	6	186	40	221	8.29e-103	295
MS.gene053030.t1	MTR_5g046410	80.220	182	35	1	6	186	40	221	8.85e-103	295
MS.gene053030.t1	MTR_5g046430	80.220	182	35	1	6	186	40	221	8.85e-103	295
MS.gene053030.t1	MTR_4g017030	80.220	182	35	1	6	186	40	221	8.85e-103	295
MS.gene053030.t1	MTR_6g005350	76.796	181	41	1	6	186	40	219	7.72e-94	272
MS.gene053030.t1	MTR_6g005380	72.189	169	46	1	6	173	40	208	3.76e-83	245
MS.gene053030.t1	MTR_1g023770	68.421	171	52	1	13	181	39	209	1.07e-80	238
MS.gene053030.t1	MTR_2g030855	67.052	173	55	1	11	181	40	212	5.20e-80	237
MS.gene053030.t1	MTR_2g031270	67.052	173	55	1	11	181	41	213	4.38e-79	234
MS.gene053030.t1	MTR_2g030895	66.279	172	55	2	13	181	7	178	2.63e-77	229
MS.gene053030.t1	MTR_2g030865	66.279	172	55	2	13	181	7	178	8.82e-76	225
MS.gene053030.t1	MTR_2g031300	60.625	160	41	2	13	170	7	146	4.61e-60	184
MS.gene053030.t1	MTR_1g085500	46.237	186	92	3	1	180	30	213	5.97e-52	166
MS.gene053030.t1	MTR_7g111240	51.124	178	83	2	6	181	36	211	6.49e-51	163
MS.gene053030.t1	MTR_7g111240	50.543	184	86	3	1	181	27	208	1.26e-50	162
MS.gene053030.t1	MTR_1g085140	46.629	178	91	2	6	181	40	215	8.38e-48	155
MS.gene053030.t1	MTR_5g036570	47.753	178	88	3	7	181	44	219	9.84e-46	150
MS.gene053030.t1	MTR_1g112200	46.471	170	86	3	13	181	42	207	1.75e-42	141
MS.gene053030.t1	MTR_8g020750	48.993	149	71	2	9	155	39	184	4.91e-41	138
MS.gene053030.t1	MTR_2g041550	45.614	171	87	3	10	178	37	203	8.51e-41	137
MS.gene053030.t1	MTR_1g060120	41.176	170	95	3	13	181	56	221	5.20e-38	130
MS.gene053030.t1	MTR_2g041570	41.279	172	95	3	10	179	37	204	2.16e-35	123
MS.gene053030.t1	MTR_2g041580	41.520	171	94	3	10	178	37	203	2.49e-35	123
MS.gene053030.t1	MTR_3g019710	40.230	174	98	3	9	181	37	205	3.67e-33	117
MS.gene053030.t1	MTR_8g020630	39.080	174	100	3	9	181	37	205	1.12e-32	116
MS.gene053030.t1	MTR_8g020590	39.306	173	99	3	9	179	34	202	2.23e-32	115
MS.gene053030.t1	MTR_8g020650	39.655	174	99	3	9	181	37	205	3.06e-32	115
MS.gene053030.t1	MTR_2g045100	39.655	174	99	3	9	181	37	205	9.25e-32	114
MS.gene053030.t1	MTR_4g010340	39.655	174	98	4	9	181	34	201	2.84e-31	112
MS.gene053030.t1	MTR_8g007300	42.000	150	84	2	6	154	44	191	3.30e-31	113
MS.gene053030.t1	MTR_3g019680	39.080	174	100	3	9	181	36	204	4.98e-31	112
MS.gene053030.t1	MTR_3g019650	38.506	174	101	3	9	181	36	204	1.57e-30	110
MS.gene053030.t1	MTR_2g036120	38.506	174	101	3	9	181	37	205	3.23e-30	110
MS.gene053030.t1	MTR_8g020670	37.931	174	102	3	9	181	37	205	1.90e-29	108
MS.gene053030.t1	MTR_8g020770	38.636	176	100	3	9	181	38	208	4.46e-29	107
MS.gene053030.t1	MTR_8g020610	40.351	171	94	5	13	181	39	203	9.50e-29	106
MS.gene053030.t1	MTR_2g044040	36.782	174	104	3	9	181	37	205	6.78e-28	104
MS.gene053030.t1	MTR_8g020763	36.000	175	105	3	9	181	17	186	1.13e-27	103
MS.gene053030.t1	MTR_4g052770	39.860	143	81	3	40	181	67	205	3.89e-27	102
MS.gene053030.t1	MTR_0284s0010	36.782	174	104	3	9	181	37	205	4.69e-27	102
MS.gene053030.t1	MTR_4g052780	39.860	143	81	3	40	181	67	205	5.42e-27	101
MS.gene053030.t1	MTR_8g020760	36.782	174	104	3	9	181	39	207	1.77e-26	100
MS.gene053030.t1	MTR_2g086620	41.481	135	74	3	48	181	74	204	2.41e-26	100
MS.gene053030.t1	MTR_7g011340	36.207	174	105	3	9	181	37	205	3.14e-26	99.8
MS.gene053030.t1	MTR_2g086630	41.481	135	74	3	48	181	74	204	3.43e-26	99.8
MS.gene053030.t1	MTR_2g086640	40.741	135	75	3	48	181	73	203	6.71e-26	99.0
MS.gene053030.t1	MTR_3g096330	35.260	173	108	3	7	178	596	765	9.49e-26	103
MS.gene053030.t1	MTR_5g031460	35.429	175	107	3	8	181	36	205	1.78e-25	97.8
MS.gene053030.t1	MTR_2g019780	35.632	174	103	4	9	181	43	208	3.08e-25	97.4
MS.gene053030.t1	MTR_3g073170	35.632	174	103	4	9	181	41	206	1.45e-24	95.5
MS.gene053030.t1	MTR_2g030915	54.667	75	20	1	59	133	1	61	2.32e-20	81.6
MS.gene053030.t1	MTR_4g027415	39.815	108	61	2	10	116	38	142	1.53e-15	70.5
MS.gene053030.t1	MTR_3g019810	31.395	172	104	6	9	178	143	302	3.53e-14	69.3
MS.gene053030.t1	MTR_2g072560	43.038	79	44	1	9	86	37	115	4.58e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053030.t1	AT5G38940	66.854	178	57	1	6	181	44	221	7.29e-81	239
MS.gene053030.t1	AT5G38940	66.854	178	57	1	6	181	68	245	1.35e-80	239
MS.gene053030.t1	AT5G38930	67.416	178	56	1	6	181	44	221	7.99e-80	237
MS.gene053030.t1	AT5G39110	65.363	179	59	2	6	181	42	220	9.28e-78	231
MS.gene053030.t1	AT3G05950	67.598	179	55	2	6	181	43	221	1.76e-77	231
MS.gene053030.t1	AT5G38960	65.363	179	59	2	6	181	44	222	6.15e-77	229
MS.gene053030.t1	AT5G39160	64.804	179	60	2	6	181	41	219	7.40e-77	229
MS.gene053030.t1	AT5G38910	66.292	178	58	2	6	181	42	219	8.17e-77	229
MS.gene053030.t1	AT5G39130	64.246	179	61	2	6	181	41	219	8.53e-77	229
MS.gene053030.t1	AT5G39190	64.804	179	60	2	6	181	41	219	1.31e-76	229
MS.gene053030.t1	AT5G39150	64.804	179	60	2	6	181	41	219	3.90e-76	228
MS.gene053030.t1	AT5G39120	64.804	179	60	2	6	181	41	219	5.41e-76	227
MS.gene053030.t1	AT5G39180	64.804	179	60	2	6	181	41	219	7.51e-76	227
MS.gene053030.t1	AT4G14630	64.246	179	61	2	6	181	44	222	7.21e-75	224
MS.gene053030.t1	AT5G39160	64.571	175	59	2	10	181	41	215	7.90e-74	221
MS.gene053030.t1	AT3G04200	66.480	179	57	2	6	181	44	222	2.73e-73	220
MS.gene053030.t1	AT3G04150	60.335	179	68	2	6	181	43	221	1.00e-66	204
MS.gene053030.t1	AT3G04150	60.335	179	68	2	6	181	56	234	1.35e-66	204
MS.gene053030.t1	AT5G39160	66.447	152	50	1	31	181	46	197	8.13e-66	201
MS.gene053030.t1	AT5G39190	66.447	152	50	1	31	181	46	197	8.68e-66	201
MS.gene053030.t1	AT3G04190	58.659	179	71	2	6	181	43	221	4.11e-63	194
MS.gene053030.t1	AT3G04170	56.425	179	72	3	6	181	43	218	8.51e-61	189
MS.gene053030.t1	AT3G04180	55.307	179	77	2	6	181	43	221	6.64e-59	184
MS.gene053030.t1	AT1G09560	49.162	179	87	2	6	182	40	216	3.27e-51	164
MS.gene053030.t1	AT5G38910	51.685	178	47	3	6	181	42	182	3.83e-50	160
MS.gene053030.t1	AT1G18970	48.876	178	85	3	8	183	47	220	9.98e-50	160
MS.gene053030.t1	AT1G02335	46.591	176	90	2	8	181	42	215	2.52e-49	159
MS.gene053030.t1	AT1G18980	48.876	178	85	3	8	183	47	220	2.65e-48	157
MS.gene053030.t1	AT3G62020	47.340	188	90	4	1	181	1	186	3.03e-48	155
MS.gene053030.t1	AT3G62020	48.045	179	88	3	6	181	39	215	8.19e-48	155
MS.gene053030.t1	AT5G26700	46.629	178	84	4	8	181	39	209	1.38e-47	154
MS.gene053030.t1	AT3G05930	44.633	177	93	2	8	181	41	215	2.57e-47	154
MS.gene053030.t1	AT1G10460	43.333	180	96	4	6	181	38	215	2.05e-43	144
MS.gene053030.t1	AT3G10080	42.941	170	92	3	13	181	54	219	2.68e-39	134
MS.gene053030.t1	AT3G10080	42.941	170	92	3	13	181	125	290	1.51e-38	134
MS.gene053030.t1	AT5G61750	47.020	151	75	3	5	153	36	183	3.13e-37	128
MS.gene053030.t1	AT5G20630	44.295	149	79	2	9	155	37	183	1.75e-36	126
MS.gene053030.t1	AT1G74820	38.857	175	101	3	9	181	55	225	2.90e-32	115
MS.gene053030.t1	AT1G72610	38.596	171	99	3	10	178	35	201	1.48e-30	111
MS.gene053030.t1	AT5G38950	65.625	64	22	0	110	173	2	65	2.00e-21	84.7

Find 38 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTATTGCTAATGCTGTATT+TGG	0.046653	6.2:+1297244	MS.gene053030:CDS
TAGTAATAACACCTGGATTT+TGG	0.212711	6.2:-1297225	None:intergenic
AGTATCTCATTAACAGTAAC+CGG	0.338632	6.2:-1296935	None:intergenic
TTCACTTCCAATTGAATGTT+GGG	0.341251	6.2:+1297167	MS.gene053030:CDS
TCATTTGCTGTAGCAAGCTT+TGG	0.355521	6.2:-1296854	None:intergenic
GGAAATGCAGTTGCCATTGC+TGG	0.378013	6.2:+1297193	MS.gene053030:CDS
CTCGTGTTGACTTTGCATCT+AGG	0.405287	6.2:+1296987	MS.gene053030:CDS
TTCCATACCCAACATTCAAT+TGG	0.406935	6.2:-1297174	None:intergenic
TGGAAGTGAATGAGACCAAT+TGG	0.411740	6.2:-1297154	None:intergenic
CTATTGCTAATGCTGTATTT+GGG	0.423500	6.2:+1297245	MS.gene053030:CDS
TCGTGTTGACTTTGCATCTA+GGG	0.430505	6.2:+1296988	MS.gene053030:CDS
ATTCACTTCCAATTGAATGT+TGG	0.434824	6.2:+1297166	MS.gene053030:CDS
ATTGTCCACTTGAAAAGCTT+TGG	0.448442	6.2:-1297299	None:intergenic
TTCTTCTACTCGGTGAAAGA+AGG	0.467010	6.2:+1296878	MS.gene053030:CDS
TTCCAATTGAATGTTGGGTA+TGG	0.469140	6.2:+1297172	MS.gene053030:CDS
ATAAGAATCTCAGTGGCTCT+AGG	0.470121	6.2:-1297034	None:intergenic
TGAGATTCTTATCGTGTTGG+AGG	0.479548	6.2:+1297045	MS.gene053030:CDS
CACTGAGATTCTTATCGTGT+TGG	0.542092	6.2:+1297042	MS.gene053030:CDS
GTGGCTCTAGGGTGAGTATG+TGG	0.548107	6.2:-1297022	None:intergenic
TAAGAATCTCAGTGGCTCTA+GGG	0.548530	6.2:-1297033	None:intergenic
GGACTTAGCAGCCAAAATCC+AGG	0.549743	6.2:+1297214	MS.gene053030:CDS
AGCAAATGATTTCTTCTACT+CGG	0.553402	6.2:+1296868	MS.gene053030:CDS
ATACTAGGACTAAACACTCT+AGG	0.572011	6.2:+1296953	MS.gene053030:CDS
TCAAGTGGACAATAACATAG+TGG	0.579525	6.2:+1297309	MS.gene053030:CDS
GTTACTGTTAATGAGATACT+AGG	0.582511	6.2:+1296938	MS.gene053030:CDS
TGTGAATGGCAAATTCTGCA+AGG	0.584711	6.2:+1296829	MS.gene053030:CDS
CGTGTTGACTTTGCATCTAG+GGG	0.592403	6.2:+1296989	MS.gene053030:CDS
TTGGCTGCTAAGTCCAGCAA+TGG	0.600072	6.2:-1297206	None:intergenic
GTATCTCATTAACAGTAACC+GGG	0.609818	6.2:-1296934	None:intergenic
GAGATTCTTATCGTGTTGGA+GGG	0.612927	6.2:+1297046	MS.gene053030:CDS
GGAAATACATCAAATCCACT+TGG	0.640192	6.2:+1296899	MS.gene053030:CDS
TTGGAGGGTACACTATATGT+CGG	0.643008	6.2:+1297061	MS.gene053030:CDS
ATCACAAAAGTACTCAACAA+AGG	0.644517	6.2:+1297115	MS.gene053030:CDS
ACTTGGTTCAAAAGTGACCC+CGG	0.652639	6.2:+1296916	MS.gene053030:CDS
GCTCTAGGGTGAGTATGTGG+AGG	0.673911	6.2:-1297019	None:intergenic
TTAGCAATAGTAATAACACC+TGG	0.687379	6.2:-1297232	None:intergenic
TATCTCATTAACAGTAACCG+GGG	0.698800	6.2:-1296933	None:intergenic
CAACACGATAAGAATCTCAG+TGG	0.757588	6.2:-1297041	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTGATTAATTAAGATTTACT+TGG	+	chr6.2:1296367-1296386	MS.gene053030:intron	15.0%
!!	TATGTATATATCAATGTTGT+CGG	-	chr6.2:1296758-1296777	None:intergenic	20.0%
!!!	ACAATCTTCAAAAACAATTT+TGG	+	chr6.2:1297332-1297351	MS.gene053030:CDS	20.0%
!!!	CAATCTTCAAAAACAATTTT+GGG	+	chr6.2:1297333-1297352	MS.gene053030:CDS	20.0%
!	TATTTATAAGCAAGTGACAT+TGG	-	chr6.2:1296431-1296450	None:intergenic	25.0%
!	TTTATTCATCTTTACTCGTT+TGG	+	chr6.2:1296673-1296692	MS.gene053030:intron	25.0%
!	TTTGTGTGGCTATTAATTAA+GGG	+	chr6.2:1296621-1296640	MS.gene053030:intron	25.0%
!!	AAGATTTACTTGGTCTTTAT+AGG	+	chr6.2:1296377-1296396	MS.gene053030:intron	25.0%
!!	TTGTGTATTTTGCTTGTATA+TGG	-	chr6.2:1296495-1296514	None:intergenic	25.0%
!!	TTTTGTGTGGCTATTAATTA+AGG	+	chr6.2:1296620-1296639	MS.gene053030:intron	25.0%
!!!	TTGAAGTCTTCATGTTTTTT+TGG	-	chr6.2:1296529-1296548	None:intergenic	25.0%
	ACTATGATACAAAAGTCTCA+CGG	+	chr6.2:1296718-1296737	MS.gene053030:intron	30.0%
	ACTATTGCTAATGCTGTATT+TGG	+	chr6.2:1297244-1297263	MS.gene053030:CDS	30.0%
	AGCAAATGATTTCTTCTACT+CGG	+	chr6.2:1296868-1296887	MS.gene053030:CDS	30.0%
	AGTATCTCATTAACAGTAAC+CGG	-	chr6.2:1296938-1296957	None:intergenic	30.0%
	ATTCACTTCCAATTGAATGT+TGG	+	chr6.2:1297166-1297185	MS.gene053030:CDS	30.0%
	CTATTGCTAATGCTGTATTT+GGG	+	chr6.2:1297245-1297264	MS.gene053030:CDS	30.0%
	GATATTTCACAATGCAAAGA+TGG	-	chr6.2:1296458-1296477	None:intergenic	30.0%
	GTTACTGTTAATGAGATACT+AGG	+	chr6.2:1296938-1296957	MS.gene053030:CDS	30.0%
	TCATAGTTCAATCAGTTTGA+CGG	-	chr6.2:1296705-1296724	None:intergenic	30.0%
	TTAGCAATAGTAATAACACC+TGG	-	chr6.2:1297235-1297254	None:intergenic	30.0%
	TTCACTTCCAATTGAATGTT+GGG	+	chr6.2:1297167-1297186	MS.gene053030:CDS	30.0%
!	AGAACTTCTGATGAGATTTT+AGG	-	chr6.2:1297277-1297296	None:intergenic	30.0%
!	TAGTAATAACACCTGGATTT+TGG	-	chr6.2:1297228-1297247	None:intergenic	30.0%
!	TCTTCAAAAACAATTTTGGG+TGG	+	chr6.2:1297336-1297355	MS.gene053030:CDS	30.0%
!	TGTTTTGCAGTTTTTGTGAA+TGG	+	chr6.2:1296815-1296834	MS.gene053030:intron	30.0%
!!	ATCACAAAAGTACTCAACAA+AGG	+	chr6.2:1297115-1297134	MS.gene053030:CDS	30.0%
!!	GATGTTTTTGTGTTTCCAAT+TGG	+	chr6.2:1297139-1297158	MS.gene053030:CDS	30.0%
	ATACTAGGACTAAACACTCT+AGG	+	chr6.2:1296953-1296972	MS.gene053030:CDS	35.0%
	ATTGTCCACTTGAAAAGCTT+TGG	-	chr6.2:1297302-1297321	None:intergenic	35.0%
	CTATGATACAAAAGTCTCAC+GGG	+	chr6.2:1296719-1296738	MS.gene053030:intron	35.0%
	GGAAATACATCAAATCCACT+TGG	+	chr6.2:1296899-1296918	MS.gene053030:CDS	35.0%
	GTATCTCATTAACAGTAACC+GGG	-	chr6.2:1296937-1296956	None:intergenic	35.0%
	TATCTCATTAACAGTAACCG+GGG	-	chr6.2:1296936-1296955	None:intergenic	35.0%
	TCAAGTGGACAATAACATAG+TGG	+	chr6.2:1297309-1297328	MS.gene053030:CDS	35.0%
	TGAGTGAGTCAATTTGATCT+TGG	+	chr6.2:1296263-1296282	MS.gene053030:intron	35.0%
	TTCCAATTGAATGTTGGGTA+TGG	+	chr6.2:1297172-1297191	MS.gene053030:CDS	35.0%
	TTCCATACCCAACATTCAAT+TGG	-	chr6.2:1297177-1297196	None:intergenic	35.0%
	TTGCTTGTATATGGTTATGC+AGG	-	chr6.2:1296486-1296505	None:intergenic	35.0%
!	TGAGTACTTTTGTGATGAGA+CGG	-	chr6.2:1297111-1297130	None:intergenic	35.0%
	ACAAGATGCTAAAGCCAAGA+AGG	-	chr6.2:1296567-1296586	None:intergenic	40.0%
	ATAAGAATCTCAGTGGCTCT+AGG	-	chr6.2:1297037-1297056	None:intergenic	40.0%
	CAACACGATAAGAATCTCAG+TGG	-	chr6.2:1297044-1297063	None:intergenic	40.0%
	CACTGAGATTCTTATCGTGT+TGG	+	chr6.2:1297042-1297061	MS.gene053030:CDS	40.0%
	GAGATTCTTATCGTGTTGGA+GGG	+	chr6.2:1297046-1297065	MS.gene053030:CDS	40.0%
	GTGTGGCTATTAATTAAGGG+TGG	+	chr6.2:1296624-1296643	MS.gene053030:intron	40.0%
	TGAGATTCTTATCGTGTTGG+AGG	+	chr6.2:1297045-1297064	MS.gene053030:CDS	40.0%
	TGGAAGTGAATGAGACCAAT+TGG	-	chr6.2:1297157-1297176	None:intergenic	40.0%
	TGTGAATGGCAAATTCTGCA+AGG	+	chr6.2:1296829-1296848	MS.gene053030:CDS	40.0%
!	CCACACAAAAGTCTTGTAGA+GGG	-	chr6.2:1296610-1296629	None:intergenic	40.0%
!	TAAGAATCTCAGTGGCTCTA+GGG	-	chr6.2:1297036-1297055	None:intergenic	40.0%
!	TTCTTCTACTCGGTGAAAGA+AGG	+	chr6.2:1296878-1296897	MS.gene053030:CDS	40.0%
!	TTGGAGGGTACACTATATGT+CGG	+	chr6.2:1297061-1297080	MS.gene053030:CDS	40.0%
!	TTTGTGATGAGACGGTTTTC+TGG	-	chr6.2:1297103-1297122	None:intergenic	40.0%
!!	TCATTTGCTGTAGCAAGCTT+TGG	-	chr6.2:1296857-1296876	None:intergenic	40.0%
!!	TCGTGTTGACTTTGCATCTA+GGG	+	chr6.2:1296988-1297007	MS.gene053030:CDS	40.0%
!!	TCTCACCAAAGCTTTTCAAG+TGG	+	chr6.2:1297294-1297313	MS.gene053030:CDS	40.0%
	ACTTGGTTCAAAAGTGACCC+CGG	+	chr6.2:1296916-1296935	MS.gene053030:CDS	45.0%
	CTTGTTTGTGACAGCCTTCT+TGG	+	chr6.2:1296550-1296569	MS.gene053030:intron	45.0%
	TATCAATGTTGTCGGACGTG+AGG	-	chr6.2:1296750-1296769	None:intergenic	45.0%
!	ACAAAAGTCTTGTAGAGGGC+TGG	-	chr6.2:1296606-1296625	None:intergenic	45.0%
!	CAAAAGTCTTGTAGAGGGCT+GGG	-	chr6.2:1296605-1296624	None:intergenic	45.0%
!	CCCTCTACAAGACTTTTGTG+TGG	+	chr6.2:1296607-1296626	MS.gene053030:intron	45.0%
!	GCCACACAAAAGTCTTGTAG+AGG	-	chr6.2:1296611-1296630	None:intergenic	45.0%
!!	CGTGTTGACTTTGCATCTAG+GGG	+	chr6.2:1296989-1297008	MS.gene053030:CDS	45.0%
!!	CTCGTGTTGACTTTGCATCT+AGG	+	chr6.2:1296987-1297006	MS.gene053030:CDS	45.0%
	GGAAATGCAGTTGCCATTGC+TGG	+	chr6.2:1297193-1297212	MS.gene053030:CDS	50.0%
	GGACTTAGCAGCCAAAATCC+AGG	+	chr6.2:1297214-1297233	MS.gene053030:CDS	50.0%
	TTGGCTGCTAAGTCCAGCAA+TGG	-	chr6.2:1297209-1297228	None:intergenic	50.0%
	TTGTAGAGGGCTGGGATCAA+AGG	-	chr6.2:1296597-1296616	None:intergenic	50.0%
!!!	GGGGTCACTTTTGAACCAAG+TGG	-	chr6.2:1296917-1296936	None:intergenic	50.0%
	AGGGCTGGGATCAAAGGCAA+AGG	-	chr6.2:1296591-1296610	None:intergenic	55.0%
!!	GCTCTAGGGTGAGTATGTGG+AGG	-	chr6.2:1297022-1297041	None:intergenic	55.0%
!!	GTGGCTCTAGGGTGAGTATG+TGG	-	chr6.2:1297025-1297044	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	1296250	1297369	1296250	ID=MS.gene053030
chr6.2	mRNA	1296250	1297369	1296250	ID=MS.gene053030.t1;Parent=MS.gene053030
chr6.2	exon	1296250	1296265	1296250	ID=MS.gene053030.t1.exon1;Parent=MS.gene053030.t1
chr6.2	CDS	1296250	1296265	1296250	ID=cds.MS.gene053030.t1;Parent=MS.gene053030.t1
chr6.2	exon	1296825	1297369	1296825	ID=MS.gene053030.t1.exon2;Parent=MS.gene053030.t1
chr6.2	CDS	1296825	1297369	1296825	ID=cds.MS.gene053030.t1;Parent=MS.gene053030.t1

Gene Sequence

>MS.gene053030

ATGTGTGTGTTTTTGAGTGAGTCAATTTGATCTTGGAAAGAAGAATTAGTATATATGTAGTTGCTAAAGAATAATTCATCTAATATACAACTAATAAGAAAATAATTATACGCTGCTTTGATTAATTAAGATTTACTTGGTCTTTATAGGCTTATGCAAGTAAAACTATAGAGTTGTTCCAATGTCACTTGCTTATAAATAGACACCATCTTTGCATTGTGAAATATCTCATTCCTGCATAACCATATACAAGCAAAATACACAAATTGAATTGTTCCAAAAAAACATGAAGACTTCAATCTTGTTTGTGACAGCCTTCTTGGCTTTAGCATCTTGTGCCTTTGCCTTTGATCCCAGCCCTCTACAAGACTTTTGTGTGGCTATTAATTAAGGGTGGTATGTATACTTTTTCATACTTATTTATTTATTCATCTTTACTCGTTTGGTTCAATCCGTCAAACTGATTGAACTATGATACAAAAGTCTCACGGGTTCAACCTCACGTCCGACAACATTGATATATACATATATAAGTAGAGCATGTTATTTAATTACATGATGAATTTGTTTTGCAGTTTTTGTGAATGGCAAATTCTGCAAGGATCCAAAGCTTGCTACAGCAAATGATTTCTTCTACTCGGTGAAAGAAGGAAATACATCAAATCCACTTGGTTCAAAAGTGACCCCGGTTACTGTTAATGAGATACTAGGACTAAACACTCTAGGTATCTCTCTTGCTCGTGTTGACTTTGCATCTAGGGGACTAAATCCTCCACATACTCACCCTAGAGCCACTGAGATTCTTATCGTGTTGGAGGGTACACTATATGTCGGATTTGTTACTTCTAATCCAGAAAACCGTCTCATCACAAAAGTACTCAACAAAGGAGATGTTTTTGTGTTTCCAATTGGTCTCATTCACTTCCAATTGAATGTTGGGTATGGAAATGCAGTTGCCATTGCTGGACTTAGCAGCCAAAATCCAGGTGTTATTACTATTGCTAATGCTGTATTTGGGTCTAATCCTAAAATCTCATCAGAAGTTCTCACCAAAGCTTTTCAAGTGGACAATAACATAGTGGACAATCTTCAAAAACAATTTTGGGTGGACAACAACTAG

Protein sequence

>MS.gene053030.t1

MCVFLIFVNGKFCKDPKLATANDFFYSVKEGNTSNPLGSKVTPVTVNEILGLNTLGISLARVDFASRGLNPPHTHPRATEILIVLEGTLYVGFVTSNPENRLITKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITIANAVFGSNPKISSEVLTKAFQVDNNIVDNLQKQFWVDNN