AlfalfaGEDB | MS.gene79094

M. sativa cultivar XinJiangDaYe / MS.gene79094

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79094.t1	XP_003601922.1	94.2	154	9	0	1	154	1	154	1.10E-76	295.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79094.t1	G7J380	94.2	154	9	0	1	154	1	154	8.3e-77	295.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049181	MS.gene79094	0.834105	3.63E-56	-1.69E-46
MS.gene049259	MS.gene79094	0.803192	3.92E-49	-1.69E-46
MS.gene049281	MS.gene79094	0.860156	2.51E-63	-1.69E-46
MS.gene05015	MS.gene79094	0.803985	2.68E-49	-1.69E-46
MS.gene050363	MS.gene79094	0.82789	1.22E-54	-1.69E-46
MS.gene050381	MS.gene79094	0.841616	4.27E-58	-1.69E-46
MS.gene050883	MS.gene79094	0.892056	2.26E-74	-1.69E-46
MS.gene051044	MS.gene79094	0.822642	2.12E-53	-1.69E-46
MS.gene051127	MS.gene79094	0.847955	8.33E-60	-1.69E-46
MS.gene051364	MS.gene79094	0.805432	1.34E-49	-1.69E-46
MS.gene051946	MS.gene79094	0.823899	1.08E-53	-1.69E-46
MS.gene052053	MS.gene79094	0.812724	3.67E-51	-1.69E-46
MS.gene052089	MS.gene79094	0.850901	1.26E-60	-1.69E-46
MS.gene052090	MS.gene79094	0.801407	9.14E-49	-1.69E-46
MS.gene052091	MS.gene79094	0.815402	9.41E-52	-1.69E-46
MS.gene052482	MS.gene79094	-0.80188	7.31E-49	-1.69E-46
MS.gene052486	MS.gene79094	-0.805046	1.61E-49	-1.69E-46
MS.gene053420	MS.gene79094	0.811101	8.28E-51	-1.69E-46
MS.gene053549	MS.gene79094	0.812932	3.31E-51	-1.69E-46
MS.gene053561	MS.gene79094	0.803297	3.73E-49	-1.69E-46
MS.gene053826	MS.gene79094	0.849809	2.55E-60	-1.69E-46
MS.gene054056	MS.gene79094	0.837393	5.34E-57	-1.69E-46
MS.gene054959	MS.gene79094	0.810347	1.21E-50	-1.69E-46
MS.gene055154	MS.gene79094	0.820411	6.96E-53	-1.69E-46
MS.gene055549	MS.gene79094	0.882863	7.29E-71	-1.69E-46
MS.gene055550	MS.gene79094	0.873979	9.66E-68	-1.69E-46
MS.gene055551	MS.gene79094	0.846503	2.09E-59	-1.69E-46
MS.gene05589	MS.gene79094	-0.802585	5.23E-49	-1.69E-46
MS.gene055942	MS.gene79094	0.825387	4.82E-54	-1.69E-46
MS.gene056310	MS.gene79094	0.823949	1.05E-53	-1.69E-46
MS.gene056311	MS.gene79094	0.865022	7.98E-65	-1.69E-46
MS.gene056365	MS.gene79094	0.815666	8.23E-52	-1.69E-46
MS.gene056504	MS.gene79094	-0.814913	1.21E-51	-1.69E-46
MS.gene056530	MS.gene79094	0.812414	4.29E-51	-1.69E-46
MS.gene056761	MS.gene79094	0.819507	1.12E-52	-1.69E-46
MS.gene057014	MS.gene79094	0.821412	4.09E-53	-1.69E-46
MS.gene058068	MS.gene79094	0.826866	2.14E-54	-1.69E-46
MS.gene058099	MS.gene79094	0.825245	5.21E-54	-1.69E-46
MS.gene058109	MS.gene79094	0.812239	4.69E-51	-1.69E-46
MS.gene058111	MS.gene79094	0.854403	1.26E-61	-1.69E-46
MS.gene058171	MS.gene79094	0.817301	3.54E-52	-1.69E-46
MS.gene058173	MS.gene79094	0.810462	1.14E-50	-1.69E-46
MS.gene058175	MS.gene79094	0.816836	4.50E-52	-1.69E-46
MS.gene058268	MS.gene79094	0.817243	3.65E-52	-1.69E-46
MS.gene058269	MS.gene79094	0.805905	1.06E-49	-1.69E-46
MS.gene058493	MS.gene79094	0.871356	7.28E-67	-1.69E-46
MS.gene058494	MS.gene79094	0.830737	2.48E-55	-1.69E-46
MS.gene058628	MS.gene79094	0.859633	3.61E-63	-1.69E-46
MS.gene058629	MS.gene79094	0.853504	2.29E-61	-1.69E-46
MS.gene058630	MS.gene79094	0.865017	8.01E-65	-1.69E-46
MS.gene059045	MS.gene79094	0.808841	2.54E-50	-1.69E-46
MS.gene059690	MS.gene79094	0.827011	1.98E-54	-1.69E-46
MS.gene059694	MS.gene79094	0.830899	2.27E-55	-1.69E-46
MS.gene059697	MS.gene79094	0.825795	3.86E-54	-1.69E-46
MS.gene059865	MS.gene79094	-0.817641	2.97E-52	-1.69E-46
MS.gene060595	MS.gene79094	0.827509	1.50E-54	-1.69E-46
MS.gene06077	MS.gene79094	-0.813565	2.40E-51	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79094.t1	MTR_3g086830	94.156	154	9	0	1	154	1	154	1.32e-81	238
MS.gene79094.t1	MTR_8g089920	43.137	153	75	4	4	154	1	143	6.05e-33	114

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 39 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTGGTAATTGTTTATCATT+TGG	0.298328	3.2:-74147421	None:intergenic
AGGAATCTGTAGTGAATTCT+AGG	0.331571	3.2:+74147800	MS.gene79094:CDS
AGGGATGTTGGTGGAGGTAG+AGG	0.333746	3.2:+74147721	MS.gene79094:CDS
GAAGAAAGAAAGATGGCTTT+TGG	0.373560	3.2:+74147743	MS.gene79094:CDS
TTGTTTCGAGGAACCGAGTC+AGG	0.374583	3.2:+74147695	MS.gene79094:CDS
AGGTACTCAAATTGAGGAAA+AGG	0.393008	3.2:+74147770	MS.gene79094:CDS
GAGAGAATCAATAGGGTTCT+TGG	0.399060	3.2:-74147488	None:intergenic
TGAGGAGAAGCAGGAGAAGA+AGG	0.411004	3.2:-74147523	None:intergenic
CAATAGTAGAGAGAATCAAT+AGG	0.415959	3.2:-74147496	None:intergenic
TTTGTTGAGGCATCATCAAT+AGG	0.416519	3.2:-74147547	None:intergenic
GATGATGCCTCAACAAATCA+TGG	0.439486	3.2:+74147553	MS.gene79094:CDS
TAGTGAATTCTAGGACTTGA+AGG	0.449666	3.2:+74147809	MS.gene79094:CDS
GGTCCAAGGTACTCAAATTG+AGG	0.456858	3.2:+74147764	MS.gene79094:CDS
TTTCCTCAATTTGAGTACCT+TGG	0.458595	3.2:-74147767	None:intergenic
AGGGAGAGGGATGTTGGTGG+AGG	0.478556	3.2:+74147715	MS.gene79094:CDS
AGTCGCTTGCCGTTGTTTCG+AGG	0.489139	3.2:+74147683	MS.gene79094:CDS
TCAATAGGTTGAGGAGAAGC+AGG	0.490038	3.2:-74147532	None:intergenic
GGTACTCAAATTGAGGAAAA+GGG	0.507988	3.2:+74147771	MS.gene79094:CDS
TGTCATACAAGAAGCAGAAC+CGG	0.515419	3.2:-74147626	None:intergenic
AATTAGAAGCAACAAGAGTA+AGG	0.516499	3.2:+74147386	MS.gene79094:CDS
GGTAGAGGAAGAAAGAAAGA+TGG	0.520786	3.2:+74147736	MS.gene79094:CDS
CGAGGAACCGAGTCAGGGAG+AGG	0.521049	3.2:+74147701	MS.gene79094:CDS
AATAGTAGAGAGAATCAATA+GGG	0.528508	3.2:-74147495	None:intergenic
CAACATCCCTCTCCCTGACT+CGG	0.533206	3.2:-74147708	None:intergenic
CGAGTCAGGGAGAGGGATGT+TGG	0.536071	3.2:+74147709	MS.gene79094:CDS
CAATAATGAATCAGATGAAG+TGG	0.549086	3.2:+74147359	None:intergenic
GTCAGGGAGAGGGATGTTGG+TGG	0.559065	3.2:+74147712	MS.gene79094:CDS
GAGGCATCATCAATAGGTTG+AGG	0.568712	3.2:-74147541	None:intergenic
GAGTTTGTCTCTTAAACAAG+AGG	0.578724	3.2:-74147452	None:intergenic
CCAAATGATAAACAATTACC+AGG	0.580717	3.2:+74147421	MS.gene79094:CDS
GAGGAACCGAGTCAGGGAGA+GGG	0.581827	3.2:+74147702	MS.gene79094:CDS
ATCGTAGTAGACACTTTCGC+AGG	0.593355	3.2:+74147587	MS.gene79094:CDS
TGAAGACCCATGATTTGTTG+AGG	0.607126	3.2:-74147560	None:intergenic
AGGAATGCTTCACAAGCGAC+CGG	0.610619	3.2:+74147607	MS.gene79094:CDS
ATGATGCCTCAACAAATCAT+GGG	0.612329	3.2:+74147554	MS.gene79094:CDS
ATTGAGGAAAAGGGATACAG+AGG	0.620071	3.2:+74147780	MS.gene79094:CDS
TGTTTCGAGGAACCGAGTCA+GGG	0.624425	3.2:+74147696	MS.gene79094:CDS
AAACAAGAGGAACAAACACC+TGG	0.650993	3.2:-74147439	None:intergenic
GACTCGGTTCCTCGAAACAA+CGG	0.676399	3.2:-74147692	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AATAGTAGAGAGAATCAATA+GGG	-	chr3.2:74147498-74147517	None:intergenic	25.0%
	AATTAGAAGCAACAAGAGTA+AGG	+	chr3.2:74147386-74147405	MS.gene79094:CDS	30.0%
	CAATAGTAGAGAGAATCAAT+AGG	-	chr3.2:74147499-74147518	None:intergenic	30.0%
	CCAAATGATAAACAATTACC+AGG	+	chr3.2:74147421-74147440	MS.gene79094:CDS	30.0%
	CCTGGTAATTGTTTATCATT+TGG	-	chr3.2:74147424-74147443	None:intergenic	30.0%
	AGGAATCTGTAGTGAATTCT+AGG	+	chr3.2:74147800-74147819	MS.gene79094:CDS	35.0%
	AGGTACTCAAATTGAGGAAA+AGG	+	chr3.2:74147770-74147789	MS.gene79094:CDS	35.0%
	ATGATGCCTCAACAAATCAT+GGG	+	chr3.2:74147554-74147573	MS.gene79094:CDS	35.0%
	GAGTTTGTCTCTTAAACAAG+AGG	-	chr3.2:74147455-74147474	None:intergenic	35.0%
	GGTACTCAAATTGAGGAAAA+GGG	+	chr3.2:74147771-74147790	MS.gene79094:CDS	35.0%
	TTTCCTCAATTTGAGTACCT+TGG	-	chr3.2:74147770-74147789	None:intergenic	35.0%
!	GAAGAAAGAAAGATGGCTTT+TGG	+	chr3.2:74147743-74147762	MS.gene79094:CDS	35.0%
!	TTTGTTGAGGCATCATCAAT+AGG	-	chr3.2:74147550-74147569	None:intergenic	35.0%
	AAACAAGAGGAACAAACACC+TGG	-	chr3.2:74147442-74147461	None:intergenic	40.0%
	ATTGAGGAAAAGGGATACAG+AGG	+	chr3.2:74147780-74147799	MS.gene79094:CDS	40.0%
	GAGAGAATCAATAGGGTTCT+TGG	-	chr3.2:74147491-74147510	None:intergenic	40.0%
	GATGATGCCTCAACAAATCA+TGG	+	chr3.2:74147553-74147572	MS.gene79094:CDS	40.0%
	GGTAGAGGAAGAAAGAAAGA+TGG	+	chr3.2:74147736-74147755	MS.gene79094:CDS	40.0%
	TGTCATACAAGAAGCAGAAC+CGG	-	chr3.2:74147629-74147648	None:intergenic	40.0%
!!	TGAAGACCCATGATTTGTTG+AGG	-	chr3.2:74147563-74147582	None:intergenic	40.0%
	ATCGTAGTAGACACTTTCGC+AGG	+	chr3.2:74147587-74147606	MS.gene79094:CDS	45.0%
!	GAAAGATGGCTTTTGGTCCA+AGG	+	chr3.2:74147750-74147769	MS.gene79094:CDS	45.0%
!	GAGGCATCATCAATAGGTTG+AGG	-	chr3.2:74147544-74147563	None:intergenic	45.0%
!	GGTCCAAGGTACTCAAATTG+AGG	+	chr3.2:74147764-74147783	MS.gene79094:CDS	45.0%
!	TCAATAGGTTGAGGAGAAGC+AGG	-	chr3.2:74147535-74147554	None:intergenic	45.0%
	AGGAATGCTTCACAAGCGAC+CGG	+	chr3.2:74147607-74147626	MS.gene79094:CDS	50.0%
	TGAGGAGAAGCAGGAGAAGA+AGG	-	chr3.2:74147526-74147545	None:intergenic	50.0%
	TGTTTCGAGGAACCGAGTCA+GGG	+	chr3.2:74147696-74147715	MS.gene79094:CDS	50.0%
	TTGTTTCGAGGAACCGAGTC+AGG	+	chr3.2:74147695-74147714	MS.gene79094:CDS	50.0%
!	GACTCGGTTCCTCGAAACAA+CGG	-	chr3.2:74147695-74147714	None:intergenic	50.0%
	CAACATCCCTCTCCCTGACT+CGG	-	chr3.2:74147711-74147730	None:intergenic	55.0%
!	AGGGATGTTGGTGGAGGTAG+AGG	+	chr3.2:74147721-74147740	MS.gene79094:CDS	55.0%
!	AGTCGCTTGCCGTTGTTTCG+AGG	+	chr3.2:74147683-74147702	MS.gene79094:CDS	55.0%
	CGAGTCAGGGAGAGGGATGT+TGG	+	chr3.2:74147709-74147728	MS.gene79094:CDS	60.0%
	GAGGAACCGAGTCAGGGAGA+GGG	+	chr3.2:74147702-74147721	MS.gene79094:CDS	60.0%
	GTCAGGGAGAGGGATGTTGG+TGG	+	chr3.2:74147712-74147731	MS.gene79094:CDS	60.0%
!	AGGGAGAGGGATGTTGGTGG+AGG	+	chr3.2:74147715-74147734	MS.gene79094:CDS	60.0%
	CGAGGAACCGAGTCAGGGAG+AGG	+	chr3.2:74147701-74147720	MS.gene79094:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	74147364	74147828	74147364	ID=MS.gene79094
chr3.2	mRNA	74147364	74147828	74147364	ID=MS.gene79094.t1;Parent=MS.gene79094
chr3.2	exon	74147364	74147828	74147364	ID=MS.gene79094.t1.exon1;Parent=MS.gene79094.t1
chr3.2	CDS	74147364	74147828	74147364	ID=cds.MS.gene79094.t1;Parent=MS.gene79094.t1

Gene Sequence

>MS.gene79094

ATGAATCAGATGAAGTGGTGCGAATTAGAAGCAACAAGAGTAAGGTGCAAAGAACATCCAAATGATAAACAATTACCAGGTGTTTGTTCCTCTTGTTTAAGAGACAAACTCTCAAATCTATACACCAAGAACCCTATTGATTCTCTCTACTATTGTTCTCCTTCTTCTCCTGCTTCTCCTCAACCTATTGATGATGCCTCAACAAATCATGGGTCTTCAGCTCATCGTAGTAGACACTTTCGCAGGAATGCTTCACAAGCGACCGGTTCTGCTTCTTGTATGACAAGCTTTAATCATGCGTTGAACTTGAAGAAGAGCAAGTCGCTTGCCGTTGTTTCGAGGAACCGAGTCAGGGAGAGGGATGTTGGTGGAGGTAGAGGAAGAAAGAAAGATGGCTTTTGGTCCAAGGTACTCAAATTGAGGAAAAGGGATACAGAGGAATCTGTAGTGAATTCTAGGACTTGA

Protein sequence

>MS.gene79094.t1

MNQMKWCELEATRVRCKEHPNDKQLPGVCSSCLRDKLSNLYTKNPIDSLYYCSPSSPASPQPIDDASTNHGSSAHRSRHFRRNASQATGSASCMTSFNHALNLKKSKSLAVVSRNRVRERDVGGGRGRKKDGFWSKVLKLRKRDTEESVVNSRT