AlfalfaGEDB | MS.gene79200

M. sativa cultivar XinJiangDaYe / MS.gene79200

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79200.t1	XP_003601923.1	96.1	127	5	0	1	127	594	720	3.20E-56	227.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79200.t1	G7J381	96.1	127	5	0	1	127	594	720	2.3e-56	227.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene79200	0.808597	2.86E-50	-1.69E-46
MS.gene049166	MS.gene79200	0.818225	2.19E-52	-1.69E-46
MS.gene049283	MS.gene79200	0.820139	8.03E-53	-1.69E-46
MS.gene049368	MS.gene79200	0.814739	1.32E-51	-1.69E-46
MS.gene049499	MS.gene79200	0.802036	6.79E-49	-1.69E-46
MS.gene049786	MS.gene79200	0.811162	8.04E-51	-1.69E-46
MS.gene049983	MS.gene79200	0.815754	7.86E-52	-1.69E-46
MS.gene050654	MS.gene79200	0.802081	6.64E-49	-1.69E-46
MS.gene050752	MS.gene79200	0.822142	2.78E-53	-1.69E-46
MS.gene051003	MS.gene79200	0.851871	6.69E-61	-1.69E-46
MS.gene051234	MS.gene79200	0.813535	2.44E-51	-1.69E-46
MS.gene051343	MS.gene79200	0.808341	3.25E-50	-1.69E-46
MS.gene051655	MS.gene79200	0.815951	7.11E-52	-1.69E-46
MS.gene051676	MS.gene79200	0.811748	5.99E-51	-1.69E-46
MS.gene05188	MS.gene79200	0.800054	1.73E-48	-1.69E-46
MS.gene051902	MS.gene79200	0.821042	4.98E-53	-1.69E-46
MS.gene051975	MS.gene79200	0.826159	3.16E-54	-1.69E-46
MS.gene052296	MS.gene79200	0.813509	2.47E-51	-1.69E-46
MS.gene052342	MS.gene79200	0.807788	4.26E-50	-1.69E-46
MS.gene052434	MS.gene79200	0.849685	2.76E-60	-1.69E-46
MS.gene052518	MS.gene79200	0.824981	6.01E-54	-1.69E-46
MS.gene053298	MS.gene79200	0.84797	8.26E-60	-1.69E-46
MS.gene053786	MS.gene79200	0.824955	6.10E-54	-1.69E-46
MS.gene054222	MS.gene79200	0.807797	4.24E-50	-1.69E-46
MS.gene054403	MS.gene79200	0.82175	3.42E-53	-1.69E-46
MS.gene05458	MS.gene79200	0.800099	1.69E-48	-1.69E-46
MS.gene05469	MS.gene79200	0.801214	1.00E-48	-1.69E-46
MS.gene05517	MS.gene79200	0.800872	1.18E-48	-1.69E-46
MS.gene055513	MS.gene79200	0.826484	2.65E-54	-1.69E-46
MS.gene055603	MS.gene79200	0.808948	2.41E-50	-1.69E-46
MS.gene056181	MS.gene79200	0.819716	1.00E-52	-1.69E-46
MS.gene056699	MS.gene79200	0.811155	8.07E-51	-1.69E-46
MS.gene056986	MS.gene79200	0.847048	1.48E-59	-1.69E-46
MS.gene057102	MS.gene79200	0.830411	2.98E-55	-1.69E-46
MS.gene05781	MS.gene79200	0.811644	6.32E-51	-1.69E-46
MS.gene057999	MS.gene79200	0.805725	1.16E-49	-1.69E-46
MS.gene058008	MS.gene79200	0.801342	9.42E-49	-1.69E-46
MS.gene058159	MS.gene79200	0.808179	3.52E-50	-1.69E-46
MS.gene059144	MS.gene79200	0.805502	1.29E-49	-1.69E-46
MS.gene059146	MS.gene79200	0.820872	5.45E-53	-1.69E-46
MS.gene059170	MS.gene79200	0.814542	1.46E-51	-1.69E-46
MS.gene05985	MS.gene79200	-0.806009	1.01E-49	-1.69E-46
MS.gene06011	MS.gene79200	0.871274	7.74E-67	-1.69E-46
MS.gene060763	MS.gene79200	0.843801	1.12E-58	-1.69E-46
MS.gene060935	MS.gene79200	0.833672	4.66E-56	-1.69E-46
MS.gene060937	MS.gene79200	0.845038	5.21E-59	-1.69E-46
MS.gene061100	MS.gene79200	0.817164	3.80E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79200.t1	MTR_3g086840	96.063	127	5	0	1	127	594	720	1.65e-78	245
MS.gene79200.t1	MTR_8g089925	59.375	128	47	3	1	125	463	588	1.64e-40	142
MS.gene79200.t1	MTR_8g089925	59.375	128	47	3	1	125	593	718	3.12e-40	142
MS.gene79200.t1	MTR_4g094110	41.441	111	54	4	11	116	595	699	4.79e-13	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79200.t1	AT5G65290	50.000	138	56	4	2	127	594	730	6.57e-29	110

Find 0 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TAAGTAACTTGGTTCAAAGA+TGG	-	24130:6630-6649	None:intergenic	30.0%
!	AGTAATTCTAGAAATTCAGC+TGG	+	24130:6429-6448	MS.gene79200:CDS	30.0%
!	AGAGTTTCAAGTCCAACATA+GGG	+	24130:6505-6524	MS.gene79200:CDS	35.0%
!	CCAAAAAGTTTTTACCCCTA+CGG	+	24130:6529-6548	MS.gene79200:CDS	35.0%
	ACATGGCAAACAATGAAGAC+AGG	+	24130:6477-6496	MS.gene79200:CDS	40.0%
	ACGGCAAACACAGGAAAATA+CGG	+	24130:6548-6567	MS.gene79200:CDS	40.0%
	CCAAGTTACTTACAATGACG+AGG	+	24130:6638-6657	MS.gene79200:CDS	40.0%
	CCTCGTCATTGTAAGTAACT+TGG	-	24130:6641-6660	None:intergenic	40.0%
	GATGAAGAGACAAGGAGATA+TGG	+	24130:6285-6304	MS.gene79200:CDS	40.0%
	TCTTATTCTGCGCTTGATGA+AGG	+	24130:6402-6421	MS.gene79200:CDS	40.0%
	TTCATCAAGCGCAGAATAAG+AGG	-	24130:6403-6422	None:intergenic	40.0%
!	ATTTTCCTGTGTTTGCCGTA+GGG	-	24130:6547-6566	None:intergenic	40.0%
!	CAGAGTTTCAAGTCCAACAT+AGG	+	24130:6504-6523	MS.gene79200:CDS	40.0%
!	CCGTAGGGGTAAAAACTTTT+TGG	-	24130:6532-6551	None:intergenic	40.0%
!	GAGTTTCAAGTCCAACATAG+GGG	+	24130:6506-6525	MS.gene79200:CDS	40.0%
!	TATTTTCCTGTGTTTGCCGT+AGG	-	24130:6548-6567	None:intergenic	40.0%
!!	AAACTTTTTGGCCCCTATGT+TGG	-	24130:6520-6539	None:intergenic	40.0%
	AGCAAGTACGCTGCAATTAG+AGG	+	24130:6330-6349	MS.gene79200:CDS	45.0%
	AGGAAAATACGGTCTCTCGT+GGG	+	24130:6559-6578	MS.gene79200:CDS	45.0%
	GCAAGTACGCTGCAATTAGA+GGG	+	24130:6331-6350	MS.gene79200:CDS	45.0%
!	TTTTCCTGTGTTTGCCGTAG+GGG	-	24130:6546-6565	None:intergenic	45.0%
	CAGGAAAATACGGTCTCTCG+TGG	+	24130:6558-6577	MS.gene79200:CDS	50.0%
	CTCATCAAGTGACTCAGACG+AGG	-	24130:6586-6605	None:intergenic	50.0%
	TACGCTGCAATTAGAGGGCA+GGG	+	24130:6336-6355	MS.gene79200:CDS	50.0%
	TTTACCCCTACGGCAAACAC+AGG	+	24130:6539-6558	MS.gene79200:CDS	50.0%
!	TGCAGCGTACTTGCTGCTTA+TGG	-	24130:6325-6344	None:intergenic	50.0%
!	TTCAGCTGGAGCACCATCTT+CGG	+	24130:6443-6462	MS.gene79200:CDS	50.0%
	CTGCAATTAGAGGGCAGGGT+GGG	+	24130:6340-6359	MS.gene79200:CDS	55.0%
	GTACGCTGCAATTAGAGGGC+AGG	+	24130:6335-6354	MS.gene79200:CDS	55.0%
	GTCGAAGCCAAACCCGAAGA+TGG	-	24130:6459-6478	None:intergenic	55.0%
!	CTTCGGGTTTGGCTTCGACA+TGG	+	24130:6460-6479	MS.gene79200:CDS	55.0%
!	TCAGCTGGAGCACCATCTTC+GGG	+	24130:6444-6463	MS.gene79200:CDS	55.0%
!	TGGAGCACCATCTTCGGGTT+TGG	+	24130:6449-6468	MS.gene79200:CDS	55.0%
	GCTGCAATTAGAGGGCAGGG+TGG	+	24130:6339-6358	MS.gene79200:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
24130	gene	6282	6665	6282	ID=MS.gene79200
24130	mRNA	6282	6665	6282	ID=MS.gene79200.t1;Parent=MS.gene79200
24130	exon	6282	6665	6282	ID=MS.gene79200.t1.exon1;Parent=MS.gene79200.t1
24130	CDS	6282	6665	6282	ID=cds.MS.gene79200.t1;Parent=MS.gene79200.t1

Gene Sequence

>MS.gene79200

ATGGATGAAGAGACAAGGAGATATGGCTCAAGTAGAGAAGCCATAAGCAGCAAGTACGCTGCAATTAGAGGGCAGGGTGGGTCATTATCTAAATTGAAGACAGAAGAGAAAAATGTATCCTCTTATTCTGCGCTTGATGAAGGCAGTAGTAATTCTAGAAATTCAGCTGGAGCACCATCTTCGGGTTTGGCTTCGACATGGCAAACAATGAAGACAGGCTTTCAGAGTTTCAAGTCCAACATAGGGGCCAAAAAGTTTTTACCCCTACGGCAAACACAGGAAAATACGGTCTCTCGTGGGTCCTCGTCTGAGTCACTTGATGAGATATTTCAAAGACTTAAACAGCCATCTTTGAACCAAGTTACTTACAATGACGAGGATTAA

Protein sequence

>MS.gene79200.t1

MDEETRRYGSSREAISSKYAAIRGQGGSLSKLKTEEKNVSSYSALDEGSSNSRNSAGAPSSGLASTWQTMKTGFQSFKSNIGAKKFLPLRQTQENTVSRGSSSESLDEIFQRLKQPSLNQVTYNDED