AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene26272


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26272.t1 MTR_5g075300 97.800 500 9 1 1 498 1 500 0.0 990
MS.gene26272.t1 MTR_8g077890 83.800 500 78 2 1 498 1 499 0.0 843
MS.gene26272.t1 MTR_4g069500 56.338 497 209 5 4 494 14 508 0.0 570
MS.gene26272.t1 MTR_3g116240 57.796 481 196 5 7 482 15 493 0.0 557
MS.gene26272.t1 MTR_4g072030 56.250 480 205 3 14 491 22 498 0.0 551
MS.gene26272.t1 MTR_4g069500 56.522 460 195 3 38 494 1 458 0.0 542
MS.gene26272.t1 MTR_5g019870 54.375 480 214 3 11 486 7 485 4.62e-180 514
MS.gene26272.t1 MTR_6g088450 48.542 480 227 4 2 472 34 502 7.03e-159 461
MS.gene26272.t1 MTR_8g103500 49.068 483 234 5 2 482 1 473 1.40e-154 449
MS.gene26272.t1 MTR_2g013310 47.899 476 230 6 16 489 50 509 7.66e-145 426
MS.gene26272.t1 MTR_7g446340 44.219 493 254 7 4 492 40 515 2.54e-140 414
MS.gene26272.t1 MTR_6g007340 44.219 493 254 7 4 492 40 515 2.54e-140 414
MS.gene26272.t1 MTR_2g013310 47.788 452 220 5 38 489 1 436 2.11e-138 407
MS.gene26272.t1 MTR_4g069500 56.051 314 134 2 178 488 1 313 4.45e-126 371
MS.gene26272.t1 MTR_1g116650 32.427 478 276 7 16 483 75 515 2.62e-65 220
MS.gene26272.t1 MTR_3g084110 33.333 465 275 8 34 489 45 483 8.47e-65 218
MS.gene26272.t1 MTR_1g116660 32.712 483 295 8 16 490 32 492 1.25e-64 218
MS.gene26272.t1 MTR_4g077740 31.630 411 266 4 67 477 102 497 1.01e-63 215
MS.gene26272.t1 MTR_7g005910 31.579 475 296 9 16 483 30 482 1.99e-60 206
MS.gene26272.t1 MTR_6g018790 32.511 446 267 8 36 477 124 539 7.19e-57 198
MS.gene26272.t1 MTR_7g082270 31.429 455 274 9 36 484 84 506 4.23e-54 190
MS.gene26272.t1 MTR_3g074410 30.000 430 265 7 63 483 90 492 1.04e-53 189
MS.gene26272.t1 MTR_1g022315 29.705 441 276 8 45 480 77 488 5.29e-53 186
MS.gene26272.t1 MTR_5g006070 30.044 456 276 10 57 496 35 463 5.58e-52 183
MS.gene26272.t1 MTR_5g006070 30.044 456 276 10 57 496 83 511 1.24e-51 183
MS.gene26272.t1 MTR_0009s0370 32.207 444 268 11 63 498 88 506 3.15e-51 182
MS.gene26272.t1 MTR_3g023480 31.106 434 274 8 65 494 90 502 7.30e-51 181
MS.gene26272.t1 MTR_8g077310 30.455 440 267 11 45 477 75 482 7.34e-51 181
MS.gene26272.t1 MTR_5g020270 29.773 440 276 9 45 480 78 488 1.90e-50 179
MS.gene26272.t1 MTR_1g104770 31.034 435 276 9 53 484 79 492 5.72e-50 178
MS.gene26272.t1 MTR_1g022315 29.665 418 260 8 68 480 1 389 8.78e-50 175
MS.gene26272.t1 MTR_8g102860 31.742 419 264 7 63 480 40 437 1.50e-49 176
MS.gene26272.t1 MTR_3g008160 29.787 423 274 7 63 483 40 441 1.75e-49 176
MS.gene26272.t1 MTR_0204s0020 29.561 433 279 7 55 483 75 485 2.33e-49 177
MS.gene26272.t1 MTR_3g008160 29.787 423 274 7 63 483 89 490 2.50e-49 177
MS.gene26272.t1 MTR_0204s0020 29.561 433 279 7 55 483 72 482 2.70e-49 176
MS.gene26272.t1 MTR_4g118610 30.664 437 266 12 45 477 80 483 4.32e-49 176
MS.gene26272.t1 MTR_8g102860 31.742 419 264 7 63 480 92 489 6.32e-49 176
MS.gene26272.t1 MTR_1g104750 30.805 435 277 9 53 484 78 491 1.07e-48 175
MS.gene26272.t1 MTR_8g077310 30.695 417 250 11 68 477 1 385 1.18e-48 172
MS.gene26272.t1 MTR_5g077580 28.073 545 265 11 34 484 43 554 3.04e-48 175
MS.gene26272.t1 MTR_5g020270 29.976 417 259 9 68 480 1 388 5.98e-48 170
MS.gene26272.t1 MTR_5g041550 30.682 440 280 8 63 498 90 508 1.04e-47 172
MS.gene26272.t1 MTR_2g020710 29.655 435 273 11 45 477 77 480 2.18e-47 171
MS.gene26272.t1 MTR_1g104780 30.839 441 270 9 63 495 89 502 4.33e-47 171
MS.gene26272.t1 MTR_3g008170 30.260 423 273 7 63 483 89 491 5.89e-47 171
MS.gene26272.t1 MTR_2g049020 33.728 338 202 5 34 368 43 361 9.70e-47 171
MS.gene26272.t1 MTR_2g049020 34.906 106 69 0 379 484 452 557 5.71e-12 68.6
MS.gene26272.t1 MTR_3g093060 29.841 439 283 9 63 497 42 459 3.16e-46 167
MS.gene26272.t1 MTR_6g087040 29.314 423 275 7 63 483 92 492 8.91e-46 167
MS.gene26272.t1 MTR_6g088375 29.314 423 275 7 63 483 92 492 8.91e-46 167
MS.gene26272.t1 MTR_8g077300 28.702 439 282 9 47 482 69 479 1.27e-45 166
MS.gene26272.t1 MTR_3g093010 30.445 427 270 8 63 484 89 493 1.35e-45 167
MS.gene26272.t1 MTR_0204s0040 29.078 423 275 7 63 483 94 493 2.14e-45 166
MS.gene26272.t1 MTR_2g020710 29.904 418 260 11 62 477 5 391 2.17e-45 164
MS.gene26272.t1 MTR_7g082270 32.234 394 229 9 36 423 84 445 3.04e-45 165
MS.gene26272.t1 MTR_3g074390 28.438 429 273 7 63 483 93 495 7.68e-45 165
MS.gene26272.t1 MTR_7g113970 28.176 433 275 8 48 477 93 492 1.11e-44 164
MS.gene26272.t1 MTR_7g094450 28.099 484 304 12 6 478 21 471 1.30e-44 163
MS.gene26272.t1 MTR_1g038630 32.075 424 256 9 63 480 90 487 1.60e-44 164
MS.gene26272.t1 MTR_4g091370 29.280 403 260 8 82 480 108 489 3.50e-44 163
MS.gene26272.t1 MTR_4g116770 29.078 423 275 7 63 483 290 689 4.49e-44 165
MS.gene26272.t1 MTR_3g007910 29.426 418 252 8 63 476 75 453 7.96e-44 161
MS.gene26272.t1 MTR_2g048720 34.604 341 199 8 34 369 43 364 9.94e-44 162
MS.gene26272.t1 MTR_1g038600 31.905 420 254 9 67 480 76 469 1.10e-43 161
MS.gene26272.t1 MTR_7g113960 26.767 467 305 8 33 496 43 475 1.28e-43 160
MS.gene26272.t1 MTR_3g074270 27.962 422 263 7 63 483 88 469 8.02e-43 159
MS.gene26272.t1 MTR_4g116790 27.896 423 280 7 63 483 92 491 3.51e-42 157
MS.gene26272.t1 MTR_3g080240 27.692 455 290 10 36 483 112 534 3.74e-42 157
MS.gene26272.t1 MTR_4g090600 30.170 411 262 10 74 480 100 489 5.38e-42 157
MS.gene26272.t1 MTR_5g020270 27.640 445 258 9 45 480 78 467 5.46e-42 156
MS.gene26272.t1 MTR_7g091690 28.132 423 279 8 63 483 92 491 1.67e-40 152
MS.gene26272.t1 MTR_2g026160 32.551 341 209 7 34 368 44 369 2.90e-40 153
MS.gene26272.t1 MTR_2g026160 42.308 104 60 0 379 482 455 558 2.58e-16 82.0
MS.gene26272.t1 MTR_7g094110 29.195 435 274 11 45 477 70 472 3.50e-39 148
MS.gene26272.t1 MTR_5g094760 28.538 424 276 9 63 483 92 491 3.65e-39 149
MS.gene26272.t1 MTR_4g013205 30.538 465 276 14 24 477 41 469 2.14e-38 146
MS.gene26272.t1 MTR_5g082540 28.538 431 262 11 63 480 90 487 9.59e-37 142
MS.gene26272.t1 MTR_8g077310 30.696 316 190 5 45 359 75 362 6.39e-36 138
MS.gene26272.t1 MTR_2g020710 28.571 364 228 10 45 406 77 410 2.81e-35 136
MS.gene26272.t1 MTR_2g020710 28.650 363 227 10 45 405 77 409 5.27e-35 135
MS.gene26272.t1 MTR_4g118610 29.235 366 223 11 45 406 80 413 7.25e-35 135
MS.gene26272.t1 MTR_6g087910 28.747 487 301 15 1 477 33 483 1.61e-34 135
MS.gene26272.t1 MTR_4g064820 29.912 341 211 10 34 359 113 440 2.34e-33 132
MS.gene26272.t1 MTR_2g026140 29.912 341 206 9 34 368 41 354 3.03e-32 130
MS.gene26272.t1 MTR_2g026140 40.385 104 62 0 379 482 440 543 4.35e-12 68.9
MS.gene26272.t1 MTR_7g094110 27.483 433 264 10 45 477 70 452 1.55e-31 127
MS.gene26272.t1 MTR_3g074380 29.452 292 184 5 63 354 91 360 2.35e-31 124
MS.gene26272.t1 MTR_3g116060 35.437 206 124 4 17 217 2 203 2.39e-29 122
MS.gene26272.t1 MTR_3g116060 28.958 259 152 6 252 493 487 730 2.30e-20 95.1
MS.gene26272.t1 MTR_2g020710 28.616 318 196 9 45 360 77 365 1.48e-28 117
MS.gene26272.t1 MTR_7g113960 26.100 341 220 5 33 371 43 353 4.71e-28 115
MS.gene26272.t1 MTR_7g113970 26.606 327 208 5 48 371 93 390 8.29e-28 115
MS.gene26272.t1 MTR_3g074370 27.692 325 208 7 175 493 30 333 9.33e-28 114
MS.gene26272.t1 MTR_3g074340 27.937 315 200 7 175 483 30 323 1.25e-27 113
MS.gene26272.t1 MTR_3g074320 27.937 315 200 7 175 483 30 323 2.08e-27 113
MS.gene26272.t1 MTR_4g116790 27.113 284 184 5 63 345 92 353 1.50e-26 111
MS.gene26272.t1 MTR_5g044910 31.390 223 131 6 34 246 21 231 2.57e-26 113
MS.gene26272.t1 MTR_5g044910 30.364 247 140 5 262 491 487 718 1.56e-19 92.4
MS.gene26272.t1 MTR_5g024740 30.045 223 150 4 34 252 21 241 1.73e-24 107
MS.gene26272.t1 MTR_5g024740 27.652 264 158 6 245 491 473 720 6.93e-18 87.4
MS.gene26272.t1 MTR_8g073100 30.366 191 126 4 34 220 21 208 7.37e-23 102
MS.gene26272.t1 MTR_8g073100 25.630 238 161 4 262 490 485 715 2.66e-14 75.9
MS.gene26272.t1 MTR_3g118530 33.508 191 114 5 34 217 21 205 1.48e-22 102
MS.gene26272.t1 MTR_3g118530 27.234 235 151 5 262 485 507 732 2.19e-17 85.9
MS.gene26272.t1 MTR_3g118530 33.508 191 114 5 34 217 21 205 2.09e-22 101
MS.gene26272.t1 MTR_3g074400 25.229 436 240 13 63 470 39 416 3.86e-21 95.9
MS.gene26272.t1 MTR_4g064807 42.667 75 43 0 404 478 3 77 8.41e-13 64.3
MS.gene26272.t1 MTR_4g005090 22.103 466 294 16 45 475 57 488 1.90e-12 69.7
MS.gene26272.t1 MTR_5g096000 33.824 136 74 2 40 160 32 166 1.52e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene26272.t1 AT4G36670 66.385 473 156 2 15 485 13 484 0.0 654
MS.gene26272.t1 AT2G18480 67.949 468 146 3 15 480 18 483 0.0 626
MS.gene26272.t1 AT3G18830 57.234 470 198 2 14 481 31 499 0.0 566
MS.gene26272.t1 AT2G16120 55.324 479 205 4 16 486 23 500 0.0 539
MS.gene26272.t1 AT2G16130 54.397 489 211 5 16 493 23 510 0.0 538
MS.gene26272.t1 AT2G20780 45.114 481 242 6 3 480 39 500 5.08e-141 416
MS.gene26272.t1 AT2G20780 44.843 446 224 6 46 488 26 452 5.47e-128 380
MS.gene26272.t1 AT5G17010 34.217 415 250 8 67 477 104 499 2.92e-60 206
MS.gene26272.t1 AT5G17010 34.217 415 250 8 67 477 104 499 2.92e-60 206
MS.gene26272.t1 AT5G17010 34.217 415 250 8 67 477 104 499 2.92e-60 206
MS.gene26272.t1 AT1G75220 30.455 440 273 6 45 480 76 486 1.18e-59 204
MS.gene26272.t1 AT3G03090 33.010 412 259 6 67 477 104 499 6.55e-59 202
MS.gene26272.t1 AT5G16150 32.816 451 269 9 36 482 124 544 2.30e-57 199
MS.gene26272.t1 AT5G16150 32.816 451 269 9 36 482 124 544 2.30e-57 199
MS.gene26272.t1 AT5G16150 32.816 451 269 9 36 482 124 544 2.30e-57 199
MS.gene26272.t1 AT2G43330 30.802 474 303 6 16 483 28 482 3.17e-56 196
MS.gene26272.t1 AT5G27350 30.579 484 287 10 3 477 18 461 4.70e-56 194
MS.gene26272.t1 AT3G05160 29.218 486 304 9 4 481 2 455 1.68e-54 190
MS.gene26272.t1 AT1G19450 30.455 440 273 6 45 480 77 487 4.37e-54 189
MS.gene26272.t1 AT5G59250 29.374 463 294 9 34 482 115 558 8.46e-54 190
MS.gene26272.t1 AT5G27360 29.234 496 302 10 7 489 19 478 2.51e-53 187
MS.gene26272.t1 AT5G27360 29.234 496 302 10 7 489 67 526 1.01e-52 186
MS.gene26272.t1 AT3G05150 31.403 449 264 13 45 485 63 475 2.09e-51 182
MS.gene26272.t1 AT3G05150 31.448 442 260 12 45 479 63 468 2.80e-51 181
MS.gene26272.t1 AT3G05150 31.448 442 260 12 45 479 63 468 2.80e-51 181
MS.gene26272.t1 AT1G50310 30.456 417 266 8 63 476 91 486 5.79e-51 181
MS.gene26272.t1 AT3G05165 28.395 486 308 9 4 481 11 464 9.07e-51 180
MS.gene26272.t1 AT3G05165 28.395 486 308 9 4 481 11 464 9.07e-51 180
MS.gene26272.t1 AT3G05165 28.395 486 308 9 4 481 11 464 9.07e-51 180
MS.gene26272.t1 AT5G26340 32.084 427 261 9 63 484 90 492 8.93e-50 179
MS.gene26272.t1 AT3G05160 29.977 437 272 8 47 481 2 406 1.11e-49 176
MS.gene26272.t1 AT3G05160 29.977 437 272 8 47 481 2 406 1.11e-49 176
MS.gene26272.t1 AT5G23270 31.121 437 261 11 63 488 91 498 1.29e-49 178
MS.gene26272.t1 AT4G02050 31.529 425 262 9 63 483 92 491 1.32e-49 178
MS.gene26272.t1 AT4G02050 31.529 425 262 9 63 483 92 491 1.32e-49 178
MS.gene26272.t1 AT3G19930 30.995 442 265 11 63 493 88 500 5.38e-49 176
MS.gene26272.t1 AT3G19930 30.995 442 265 11 63 493 88 500 5.38e-49 176
MS.gene26272.t1 AT5G18840 29.186 442 280 9 45 484 72 482 8.55e-49 175
MS.gene26272.t1 AT5G26250 28.257 499 314 10 1 477 4 480 8.94e-49 175
MS.gene26272.t1 AT3G19940 30.841 428 270 9 53 476 80 485 1.23e-48 175
MS.gene26272.t1 AT1G77210 30.024 423 272 8 63 483 92 492 1.03e-46 170
MS.gene26272.t1 AT1G77210 30.024 423 272 8 63 483 92 492 1.03e-46 170
MS.gene26272.t1 AT1G11260 29.048 420 269 8 63 476 89 485 6.46e-46 168
MS.gene26272.t1 AT1G54730 28.604 437 274 10 45 477 60 462 8.91e-46 166
MS.gene26272.t1 AT1G30220 36.556 331 188 8 34 359 45 358 3.15e-45 167
MS.gene26272.t1 AT1G30220 33.333 123 74 1 370 484 438 560 1.83e-13 73.2
MS.gene26272.t1 AT3G05960 29.833 419 265 8 63 477 86 479 6.96e-44 162
MS.gene26272.t1 AT1G08930 27.593 482 307 11 9 483 48 494 7.63e-44 162
MS.gene26272.t1 AT1G08930 27.593 482 307 11 9 483 48 494 7.63e-44 162
MS.gene26272.t1 AT2G48020 27.313 454 286 10 33 479 44 460 8.57e-44 161
MS.gene26272.t1 AT2G48020 27.313 454 286 10 33 479 44 460 8.57e-44 161
MS.gene26272.t1 AT1G67300 30.691 492 284 15 5 477 34 487 1.19e-43 161
MS.gene26272.t1 AT5G61520 28.505 428 271 10 63 483 47 446 1.29e-43 160
MS.gene26272.t1 AT1G08900 29.279 444 264 12 45 478 11 414 1.76e-43 159
MS.gene26272.t1 AT1G67300 30.550 491 285 15 5 477 34 486 1.87e-43 160
MS.gene26272.t1 AT1G67300 30.550 491 285 15 5 477 34 486 1.87e-43 160
MS.gene26272.t1 AT5G61520 28.505 428 271 10 63 483 95 494 2.35e-43 160
MS.gene26272.t1 AT1G08900 28.726 463 275 13 31 478 26 448 3.13e-43 159
MS.gene26272.t1 AT1G08900 29.279 444 264 12 45 478 53 456 3.37e-43 159
MS.gene26272.t1 AT1G08900 29.279 444 264 12 45 478 53 456 3.37e-43 159
MS.gene26272.t1 AT4G04750 26.549 452 292 10 45 490 64 481 9.19e-43 158
MS.gene26272.t1 AT4G04750 26.549 452 292 10 45 490 64 481 9.19e-43 158
MS.gene26272.t1 AT4G21480 30.332 422 267 9 63 480 89 487 1.20e-42 159
MS.gene26272.t1 AT4G04750 27.033 455 286 11 45 490 108 525 1.76e-42 159
MS.gene26272.t1 AT5G27360 29.268 410 247 9 87 489 1 374 5.96e-42 154
MS.gene26272.t1 AT5G27360 29.268 410 247 9 87 489 1 374 5.96e-42 154
MS.gene26272.t1 AT1G05030 28.333 480 295 12 19 485 79 522 1.11e-41 156
MS.gene26272.t1 AT1G07340 30.858 431 266 10 52 476 77 481 3.91e-41 154
MS.gene26272.t1 AT1G05030 27.696 473 295 11 24 485 34 470 4.35e-41 154
MS.gene26272.t1 AT3G05155 28.540 459 286 9 24 477 34 455 7.44e-41 153
MS.gene26272.t1 AT3G05165 27.846 492 302 12 4 486 11 458 8.20e-41 154
MS.gene26272.t1 AT4G04760 26.337 486 306 11 12 490 37 477 3.10e-40 151
MS.gene26272.t1 AT1G08890 27.010 485 301 12 8 477 11 457 3.20e-40 151
MS.gene26272.t1 AT4G16480 33.939 330 201 7 34 359 44 360 5.59e-40 152
MS.gene26272.t1 AT4G16480 38.017 121 66 1 379 490 459 579 1.86e-15 79.3
MS.gene26272.t1 AT4G16480 33.939 330 201 7 34 359 44 360 5.59e-40 152
MS.gene26272.t1 AT4G16480 38.017 121 66 1 379 490 459 579 1.86e-15 79.3
MS.gene26272.t1 AT4G16480 33.939 330 201 7 34 359 44 360 5.59e-40 152
MS.gene26272.t1 AT4G16480 38.017 121 66 1 379 490 459 579 1.86e-15 79.3
MS.gene26272.t1 AT2G35740 32.931 331 203 7 34 359 43 359 6.99e-40 152
MS.gene26272.t1 AT2G35740 36.275 102 65 0 379 480 458 559 1.15e-12 70.9
MS.gene26272.t1 AT4G04760 26.608 451 290 10 47 490 2 418 7.05e-40 149
MS.gene26272.t1 AT3G05165 28.132 423 265 8 4 418 11 402 1.38e-39 149
MS.gene26272.t1 AT3G05165 28.132 423 265 8 4 418 11 402 1.38e-39 149
MS.gene26272.t1 AT1G34580 28.205 429 277 9 63 483 89 494 3.46e-39 149
MS.gene26272.t1 AT5G27360 27.818 417 260 7 7 414 19 403 4.19e-39 147
MS.gene26272.t1 AT1G34580 28.605 430 274 10 63 483 39 444 5.18e-39 147
MS.gene26272.t1 AT1G67300 30.206 437 249 15 5 423 34 432 1.28e-38 146
MS.gene26272.t1 AT1G67300 30.206 437 249 15 5 423 34 432 1.28e-38 146
MS.gene26272.t1 AT1G67300 30.394 431 244 15 5 417 34 426 2.50e-38 145
MS.gene26272.t1 AT1G67300 30.394 431 244 15 5 417 34 426 2.50e-38 145
MS.gene26272.t1 AT1G08920 27.033 492 303 13 4 482 19 467 4.52e-38 145
MS.gene26272.t1 AT1G54730 26.773 437 261 11 45 477 60 441 5.79e-38 144
MS.gene26272.t1 AT1G54730 27.665 394 248 9 45 434 60 420 9.74e-38 144
MS.gene26272.t1 AT1G08920 26.854 499 302 14 4 482 19 474 8.47e-37 142
MS.gene26272.t1 AT5G17010 31.100 418 195 11 67 477 105 436 9.28e-37 141
MS.gene26272.t1 AT1G50310 28.771 358 231 8 129 483 14 350 2.51e-36 138
MS.gene26272.t1 AT1G77210 30.000 360 228 8 125 482 5 342 3.56e-36 137
MS.gene26272.t1 AT1G79820 30.085 472 283 14 17 477 52 487 3.95e-36 140
MS.gene26272.t1 AT1G79820 30.085 472 283 14 17 477 52 487 3.95e-36 140
MS.gene26272.t1 AT4G04760 25.153 489 305 13 12 490 37 474 2.14e-34 135
MS.gene26272.t1 AT1G54730 28.767 365 225 10 45 406 60 392 4.48e-34 133
MS.gene26272.t1 AT1G54730 28.767 365 225 10 45 406 60 392 4.48e-34 133
MS.gene26272.t1 AT3G20460 25.605 496 308 16 2 482 39 488 6.04e-34 134
MS.gene26272.t1 AT3G05400 24.459 462 313 8 24 482 33 461 9.18e-33 130
MS.gene26272.t1 AT1G08900 27.750 400 240 11 45 434 53 413 7.80e-31 124
MS.gene26272.t1 AT1G54730 25.635 394 235 10 45 434 60 399 3.09e-30 122
MS.gene26272.t1 AT1G79820 29.567 416 250 12 17 423 52 433 3.75e-30 122
MS.gene26272.t1 AT1G08920 26.126 444 273 11 4 434 19 420 1.14e-29 121
MS.gene26272.t1 AT1G20840 33.190 232 141 6 34 259 21 244 2.52e-29 122
MS.gene26272.t1 AT1G20840 30.000 240 148 6 252 480 489 719 1.07e-17 86.7
MS.gene26272.t1 AT1G20840 33.190 232 141 6 34 259 21 244 2.52e-29 122
MS.gene26272.t1 AT1G20840 30.000 240 148 6 252 480 489 719 1.07e-17 86.7
MS.gene26272.t1 AT3G51490 30.901 233 147 6 34 258 21 247 6.05e-29 121
MS.gene26272.t1 AT3G51490 26.923 260 161 7 247 491 486 731 3.17e-18 88.6
MS.gene26272.t1 AT3G51490 30.901 233 147 6 34 258 21 247 6.30e-29 121
MS.gene26272.t1 AT3G51490 26.984 252 163 6 247 491 486 723 1.05e-15 80.5
MS.gene26272.t1 AT1G54730 28.197 305 187 6 45 347 60 334 8.73e-28 114
MS.gene26272.t1 AT3G05400 23.810 462 296 9 24 482 33 441 1.76e-27 115
MS.gene26272.t1 AT2G48020 26.149 348 217 8 33 373 44 358 8.73e-27 112
MS.gene26272.t1 AT1G54730 26.575 365 212 11 45 406 60 371 1.13e-26 112
MS.gene26272.t1 AT3G51490 33.862 189 117 4 74 258 13 197 1.50e-26 114
MS.gene26272.t1 AT3G51490 26.923 260 161 7 247 491 436 681 2.59e-18 88.6
MS.gene26272.t1 AT4G35300 33.333 189 117 4 34 217 21 205 3.94e-26 112
MS.gene26272.t1 AT4G35300 25.914 301 193 8 206 493 446 729 1.53e-19 92.4
MS.gene26272.t1 AT4G35300 33.333 189 117 4 34 217 21 205 3.94e-26 112
MS.gene26272.t1 AT4G35300 25.914 301 193 8 206 493 446 729 1.53e-19 92.4
MS.gene26272.t1 AT4G35300 33.333 189 117 4 34 217 21 205 3.94e-26 112
MS.gene26272.t1 AT4G35300 25.914 301 193 8 206 493 446 729 1.53e-19 92.4
MS.gene26272.t1 AT4G35300 33.333 189 117 4 34 217 21 205 4.84e-26 112
MS.gene26272.t1 AT4G35300 25.914 301 193 8 206 493 456 739 1.82e-19 92.4
MS.gene26272.t1 AT4G35300 33.333 189 117 4 34 217 21 205 4.84e-26 112
MS.gene26272.t1 AT4G35300 25.914 301 193 8 206 493 456 739 1.82e-19 92.4
MS.gene26272.t1 AT4G35300 33.333 189 117 4 34 217 21 205 4.84e-26 112
MS.gene26272.t1 AT4G35300 25.914 301 193 8 206 493 456 739 1.82e-19 92.4
MS.gene26272.t1 AT4G35300 33.333 189 117 4 34 217 21 205 4.84e-26 112
MS.gene26272.t1 AT4G35300 25.914 301 193 8 206 493 456 739 1.82e-19 92.4
MS.gene26272.t1 AT4G35300 33.333 189 117 4 34 217 21 205 4.84e-26 112
MS.gene26272.t1 AT4G35300 25.914 301 193 8 206 493 456 739 1.82e-19 92.4
MS.gene26272.t1 AT4G35300 33.333 189 117 4 34 217 21 205 4.84e-26 112
MS.gene26272.t1 AT4G35300 25.914 301 193 8 206 493 456 739 1.82e-19 92.4
MS.gene26272.t1 AT4G35300 33.333 189 117 4 34 217 21 205 4.84e-26 112
MS.gene26272.t1 AT4G35300 25.914 301 193 8 206 493 456 739 1.82e-19 92.4
MS.gene26272.t1 AT3G05155 26.606 327 203 6 24 347 34 326 5.21e-25 105
MS.gene26272.t1 AT1G54730 27.881 269 166 6 45 311 60 302 4.01e-24 103
MS.gene26272.t1 AT1G54730 27.881 269 166 6 45 311 60 302 4.01e-24 103
MS.gene26272.t1 AT2G48020 25.545 321 201 7 33 348 44 331 3.55e-23 101
MS.gene26272.t1 AT4G35300 27.451 255 160 7 252 493 300 542 6.44e-19 90.1
MS.gene26272.t1 AT1G79820 30.918 207 130 6 17 216 52 252 1.97e-14 75.9

Find 97 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTAAAATTGCGTAATT+TGG 0.084225 5.4:-59157992 None:intergenic
ATTATTGGACTTACCGTCTT+AGG 0.162155 5.4:+59158736 MS.gene26272:CDS
CCTTCATTTGCATTAGCTTA+TGG 0.227619 5.4:+59158235 MS.gene26272:CDS
ACCAACCACCTTGGTGATTC+TGG 0.240544 5.4:-59158271 None:intergenic
CATCATTGGTGCAATTCTAA+TGG 0.282122 5.4:+59157961 MS.gene26272:CDS
ATGTTGCTTTCTTTAATATA+GGG 0.292743 5.4:+59158839 MS.gene26272:CDS
GATATTTCCTTTGAAGTTAA+GGG 0.302292 5.4:+59158894 MS.gene26272:CDS
ATCATTGGTGCAATTCTAAT+GGG 0.314023 5.4:+59157962 MS.gene26272:CDS
AGATATTTCCTTTGAAGTTA+AGG 0.315621 5.4:+59158893 MS.gene26272:CDS
AAGGTCTTACCTTTAGTTTC+AGG 0.317128 5.4:-59159075 None:intergenic
GAACTATAGAGCCAAGTTAC+AGG 0.338690 5.4:-59158868 None:intergenic
AGGTAAGACCTTGGAGGAAA+TGG 0.344977 5.4:+59159086 MS.gene26272:CDS
CTCATCAAGGTGAAGGTGTT+TGG 0.348096 5.4:+59158443 MS.gene26272:CDS
CCTGAGCTTTGTATTGGTAT+TGG 0.351649 5.4:+59158121 MS.gene26272:CDS
AGCACTGGAGGAATGATTAT+TGG 0.353223 5.4:+59158721 MS.gene26272:CDS
GCCTCTGTACTCTTCATCAT+TGG 0.353477 5.4:+59157947 MS.gene26272:CDS
GGCCCATAAAACTTCTTCAT+TGG 0.355637 5.4:-59158785 None:intergenic
TTGTGCCATTGTTGCTTCAA+TGG 0.363056 5.4:+59157055 MS.gene26272:CDS
CTGGTATATCTGTAATAGCT+TGG 0.363613 5.4:+59159031 MS.gene26272:CDS
TATGTTGCTTTCTTTAATAT+AGG 0.365503 5.4:+59158838 MS.gene26272:CDS
TCTTTGCCTGAGCTTTGTAT+TGG 0.380508 5.4:+59158115 MS.gene26272:CDS
GAAATTTCTGCTGAATAAAC+TGG 0.382342 5.4:-59158064 None:intergenic
TTTCTTGTTCCTGAAACTAA+AGG 0.383182 5.4:+59159066 MS.gene26272:CDS
TGGTATATCTGTAATAGCTT+GGG 0.390656 5.4:+59159032 MS.gene26272:CDS
GGGCGATGTATTTGTGGTAT+AGG 0.398301 5.4:+59158016 MS.gene26272:CDS
ATTTGTTGACCTTGGTCACT+TGG 0.405898 5.4:-59157022 None:intergenic
GGAGCATCTTCCTGCTGTTA+AGG 0.406134 5.4:-59157891 None:intergenic
TATATCGTTAAAACGAAGTT+CGG 0.410684 5.4:-59158359 None:intergenic
TGGATGTTGATTGCTTCAAT+TGG 0.425790 5.4:+59158502 MS.gene26272:CDS
CACCAATTGTTGCAAGCAAA+AGG 0.432892 5.4:-59158618 None:intergenic
ATTTGAGTTTGAAGCTTGGT+TGG 0.440220 5.4:+59158185 MS.gene26272:CDS
TTGGTTATGCAAGGTCAATT+AGG 0.450727 5.4:+59158289 MS.gene26272:CDS
CTTAATAAGGTCTATTGTGT+TGG 0.453060 5.4:-59159165 None:intergenic
GTATTGGAGTTGCTGTGAAT+AGG 0.456724 5.4:+59158929 MS.gene26272:CDS
TTATTGGACTTACCGTCTTA+GGG 0.458489 5.4:+59158737 MS.gene26272:CDS
TGCTATAATACTAAGTGTTA+AGG 0.459616 5.4:-59158806 None:intergenic
ATGATCGGGCGATGTATTTG+TGG 0.461629 5.4:+59158010 MS.gene26272:CDS
GTAGCGACGACCGATGTAAT+CGG 0.465188 5.4:-59157912 None:intergenic
AAAAGCATATTTGTTGACCT+TGG 0.475340 5.4:-59157030 None:intergenic
GATATTCATACAAGAGGACT+TGG 0.476610 5.4:+59157805 MS.gene26272:CDS
ATAGATTGAAATAAAACTCA+TGG 0.481365 5.4:-59158971 None:intergenic
AGGGCACAAGGGGTTAGTAT+TGG 0.484472 5.4:+59158913 MS.gene26272:CDS
TAGGGCTTGCACCTGTAACT+TGG 0.485489 5.4:+59158857 MS.gene26272:CDS
AACGATATAAAACTTGCAGC+TGG 0.492674 5.4:+59158373 MS.gene26272:CDS
TATAAAGCACTTACAATAGG+TGG 0.493596 5.4:+59158991 MS.gene26272:CDS
AGATTATTGCAAGTCAGCAC+TGG 0.494685 5.4:+59158706 MS.gene26272:CDS
TCAATGGTATCCATCGTGTC+TGG 0.495734 5.4:+59157071 MS.gene26272:CDS
TTGCTTGCAACAATTGGTGT+TGG 0.502357 5.4:+59158622 MS.gene26272:CDS
CCATAAGCTAATGCAAATGA+AGG 0.508752 5.4:-59158235 None:intergenic
ATCTATAAAGCACTTACAAT+AGG 0.509122 5.4:+59158988 MS.gene26272:CDS
AAATATTTGAGTTTGAAGCT+TGG 0.516667 5.4:+59158181 MS.gene26272:CDS
CCTTTGAAGTTAAGGGCACA+AGG 0.516798 5.4:+59158901 MS.gene26272:CDS
TGTATTTGTGGTATAGGTGT+TGG 0.521273 5.4:+59158022 MS.gene26272:CDS
CCTTGTGCCCTTAACTTCAA+AGG 0.528095 5.4:-59158901 None:intergenic
AACTAAAGGTAAGACCTTGG+AGG 0.528756 5.4:+59159080 MS.gene26272:CDS
CCAATACCAATACAAAGCTC+AGG 0.532903 5.4:-59158121 None:intergenic
AATCTTAAACCTATGTGCAT+TGG 0.538175 5.4:+59157862 MS.gene26272:CDS
ATAAAGCACTTACAATAGGT+GGG 0.539448 5.4:+59158992 MS.gene26272:CDS
AAGTGGTAAAAGTGTTGCCA+TGG 0.543147 5.4:+59159134 MS.gene26272:CDS
ATCAACATCCAACGTACAGC+AGG 0.553055 5.4:-59158490 None:intergenic
GGTGCAATTCTAATGGGGTA+TGG 0.553101 5.4:+59157968 MS.gene26272:CDS
AAGAGTCTCCATTTCCTCCA+AGG 0.558479 5.4:-59159094 None:intergenic
TTGTGTTGGATATGTTTCCA+TGG 0.559604 5.4:-59159151 None:intergenic
TCAGATACTGGTGTTATGAG+TGG 0.559878 5.4:+59157776 MS.gene26272:intron
TTGGTAGGATCCTTAACAGC+AGG 0.559879 5.4:+59157881 MS.gene26272:CDS
AGGGTTCAGCTTGACAATGG+TGG 0.561555 5.4:+59158756 MS.gene26272:CDS
TGAAACTAAAGGTAAGACCT+TGG 0.566775 5.4:+59159077 MS.gene26272:CDS
ATTTCATCTGCACATTCAAG+AGG 0.568369 5.4:+59158082 MS.gene26272:CDS
CTTAGGGTTCAGCTTGACAA+TGG 0.572467 5.4:+59158753 MS.gene26272:CDS
CTCATCATGATAGATAATCA+AGG 0.574908 5.4:+59156987 None:intergenic
CAAAAGTCTCATCAAGGTGA+AGG 0.584698 5.4:+59158436 MS.gene26272:CDS
GCCAGAATCACCAAGGTGGT+TGG 0.584713 5.4:+59158270 MS.gene26272:CDS
TTTGAAGTTAAGGGCACAAG+GGG 0.592497 5.4:+59158903 MS.gene26272:CDS
TTAAACCTATGTGCATTGGT+AGG 0.595011 5.4:+59157866 MS.gene26272:CDS
ACACAACAAGAGGTTCTAGC+AGG 0.599568 5.4:+59157839 MS.gene26272:CDS
CCAAGGTGGTTGGTTATGCA+AGG 0.600557 5.4:+59158280 MS.gene26272:CDS
TTACCTCAAAAGTCTCATCA+AGG 0.601115 5.4:+59158430 MS.gene26272:CDS
CCTTGCATAACCAACCACCT+TGG 0.601505 5.4:-59158280 None:intergenic
AGGATCCTACCAATGCACAT+AGG 0.606350 5.4:-59157871 None:intergenic
AGCAATGATATTCATACAAG+AGG 0.614276 5.4:+59157799 MS.gene26272:CDS
AATACAAAGCTCAGGCAAAG+AGG 0.618051 5.4:-59158113 None:intergenic
GACCAACACCTGCTGTACGT+TGG 0.620189 5.4:+59158482 MS.gene26272:CDS
CTTTGAAGTTAAGGGCACAA+GGG 0.620626 5.4:+59158902 MS.gene26272:CDS
AATAAGTGACACACAACAAG+AGG 0.621395 5.4:+59157829 MS.gene26272:CDS
TTATTGCAAGTCAGCACTGG+AGG 0.625472 5.4:+59158709 MS.gene26272:CDS
TAAAGCACTTACAATAGGTG+GGG 0.626965 5.4:+59158993 MS.gene26272:CDS
ATCCAACGTACAGCAGGTGT+TGG 0.630745 5.4:-59158484 None:intergenic
TGTCAAGCTGAACCCTAAGA+CGG 0.630819 5.4:-59158749 None:intergenic
GGATACCATTGAAGCAACAA+TGG 0.635730 5.4:-59157060 None:intergenic
CATAGAAAACCAAGTGACCA+AGG 0.644102 5.4:+59157013 MS.gene26272:CDS
TCATTGGTGCAATTCTAATG+GGG 0.648358 5.4:+59157963 MS.gene26272:CDS
ATATTCATACAAGAGGACTT+GGG 0.654046 5.4:+59157806 MS.gene26272:CDS
ATTACCATAACCAGACACGA+TGG 0.672562 5.4:-59157081 None:intergenic
GGAAGATGCTCCGATTACAT+CGG 0.676192 5.4:+59157902 MS.gene26272:CDS
TAACAATGCCAGAATCACCA+AGG 0.683009 5.4:+59158263 MS.gene26272:CDS
ACCAATGATGAAGAGTACAG+AGG 0.740463 5.4:-59157948 None:intergenic
CAATGCCAGAATCACCAAGG+TGG 0.756871 5.4:+59158266 MS.gene26272:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTAAAAATACATATGA+AGG + chr5.4:59157485-59157504 MS.gene26272:intron 10.0%
!!! TATTTATCAAACTATTTTTT+GGG + chr5.4:59158157-59158176 MS.gene26272:CDS 10.0%
!!! TTATTTATCAAACTATTTTT+TGG + chr5.4:59158156-59158175 MS.gene26272:CDS 10.0%
!! AAATATATGTAGAATAGTTA+GGG - chr5.4:59157757-59157776 None:intergenic 15.0%
!! CATAAAATATTTAAAAAAGC+TGG + chr5.4:59158577-59158596 MS.gene26272:CDS 15.0%
!!! AAAATAATACTTTTTTTGGA+AGG - chr5.4:59157572-59157591 None:intergenic 15.0%
!!! AACTTGAAATAAAACTTTTT+TGG - chr5.4:59158320-59158339 None:intergenic 15.0%
!!! ATATTTAGTGTCTTTTATTA+TGG - chr5.4:59157643-59157662 None:intergenic 15.0%
!!! TCACAAAATAATACTTTTTT+TGG - chr5.4:59157576-59157595 None:intergenic 15.0%
!! ATAGATTGAAATAAAACTCA+TGG - chr5.4:59158974-59158993 None:intergenic 20.0%
!! ATCATTAAAATTGCGTAATT+TGG - chr5.4:59157995-59158014 None:intergenic 20.0%
!! ATCTATGAGTTTAAAAATCA+AGG + chr5.4:59157379-59157398 MS.gene26272:intron 20.0%
!! GAAATATATGTAGAATAGTT+AGG - chr5.4:59157758-59157777 None:intergenic 20.0%
!! TTTACCAAAAAAAACAAAAG+TGG + chr5.4:59159117-59159136 MS.gene26272:CDS 20.0%
!!! AATTACGCAATTTTAATGAT+CGG + chr5.4:59157995-59158014 MS.gene26272:CDS 20.0%
!!! ATGTTGCTTTCTTTAATATA+GGG + chr5.4:59158839-59158858 MS.gene26272:CDS 20.0%
!!! ATTGGTATTGGAATTTTTTT+GGG + chr5.4:59158133-59158152 MS.gene26272:CDS 20.0%
!!! TATGTTGCTTTCTTTAATAT+AGG + chr5.4:59158838-59158857 MS.gene26272:CDS 20.0%
!!! TATTGGTATTGGAATTTTTT+TGG + chr5.4:59158132-59158151 MS.gene26272:CDS 20.0%
!!! TTATTTTTGCTTGATAAAGT+TGG + chr5.4:59158676-59158695 MS.gene26272:CDS 20.0%
!!! TTTACCACTTTTGTTTTTTT+TGG - chr5.4:59159124-59159143 None:intergenic 20.0%
! ATATTGCATATTATATGCAG+GGG + chr5.4:59157171-59157190 MS.gene26272:intron 25.0%
! ATGACAGGAAAATTAAACAA+GGG - chr5.4:59157361-59157380 None:intergenic 25.0%
! ATTAGATTAGAATCCACTTA+AGG - chr5.4:59157424-59157443 None:intergenic 25.0%
! GATATTGCATATTATATGCA+GGG + chr5.4:59157170-59157189 MS.gene26272:intron 25.0%
! TATATCGTTAAAACGAAGTT+CGG - chr5.4:59158362-59158381 None:intergenic 25.0%
! TCATTAAAAAATTGCTTGTG+TGG + chr5.4:59157534-59157553 MS.gene26272:intron 25.0%
! TCTACATATATTTCAGATAC+TGG + chr5.4:59157764-59157783 MS.gene26272:intron 25.0%
! TGCTATAATACTAAGTGTTA+AGG - chr5.4:59158809-59158828 None:intergenic 25.0%
! TTAGATTAGAATCCACTTAA+GGG - chr5.4:59157423-59157442 None:intergenic 25.0%
!! AAATATTTGAGTTTGAAGCT+TGG + chr5.4:59158181-59158200 MS.gene26272:CDS 25.0%
!! ACATATGAAGGTATATTTCA+AGG + chr5.4:59157497-59157516 MS.gene26272:intron 25.0%
!! ATCTATAAAGCACTTACAAT+AGG + chr5.4:59158988-59159007 MS.gene26272:CDS 25.0%
!! TCAAAATAACTTGTGCTTAA+GGG - chr5.4:59157338-59157357 None:intergenic 25.0%
!! TTTTTAAACTCATAGATGAC+AGG - chr5.4:59157376-59157395 None:intergenic 25.0%
!!! AATTGTCTGCTTTTAACAAT+AGG + chr5.4:59157680-59157699 MS.gene26272:intron 25.0%
!!! AGATATTTCCTTTGAAGTTA+AGG + chr5.4:59158893-59158912 MS.gene26272:CDS 25.0%
!!! ATTACGCAATTTTAATGATC+GGG + chr5.4:59157996-59158015 MS.gene26272:CDS 25.0%
!!! GATATTTCCTTTGAAGTTAA+GGG + chr5.4:59158894-59158913 MS.gene26272:CDS 25.0%
!!! GTATTATTTTGTGAACATCT+AGG + chr5.4:59157582-59157601 MS.gene26272:intron 25.0%
!!! TCTCACTTTTACTTTTATTG+AGG + chr5.4:59157128-59157147 MS.gene26272:intron 25.0%
!!! TTTTTTTGTTTTCCCTTAAG+TGG + chr5.4:59157408-59157427 MS.gene26272:intron 25.0%
AATCTTAAACCTATGTGCAT+TGG + chr5.4:59157862-59157881 MS.gene26272:CDS 30.0%
ACATATAATATGTGGAGAAG+TGG - chr5.4:59157220-59157239 None:intergenic 30.0%
AGCAATGATATTCATACAAG+AGG + chr5.4:59157799-59157818 MS.gene26272:CDS 30.0%
AGGAAACGCTAATTTATGTA+AGG + chr5.4:59157148-59157167 MS.gene26272:intron 30.0%
ATATAATATGTGGAGAAGTG+GGG - chr5.4:59157218-59157237 None:intergenic 30.0%
ATATTCATACAAGAGGACTT+GGG + chr5.4:59157806-59157825 MS.gene26272:CDS 30.0%
ATCATTGGTGCAATTCTAAT+GGG + chr5.4:59157962-59157981 MS.gene26272:CDS 30.0%
CATATAATATGTGGAGAAGT+GGG - chr5.4:59157219-59157238 None:intergenic 30.0%
GAAATTTCTGCTGAATAAAC+TGG - chr5.4:59158067-59158086 None:intergenic 30.0%
GATGACAGGAAAATTAAACA+AGG - chr5.4:59157362-59157381 None:intergenic 30.0%
GGATATTGCATATTATATGC+AGG + chr5.4:59157169-59157188 MS.gene26272:intron 30.0%
TGGTATATCTGTAATAGCTT+GGG + chr5.4:59159032-59159051 MS.gene26272:CDS 30.0%
TTAACAATAGGCATAGTTAG+TGG + chr5.4:59157692-59157711 MS.gene26272:intron 30.0%
TTTCTTGTTCCTGAAACTAA+AGG + chr5.4:59159066-59159085 MS.gene26272:CDS 30.0%
! AAAAGCATATTTGTTGACCT+TGG - chr5.4:59157033-59157052 None:intergenic 30.0%
! ATAAAGCACTTACAATAGGT+GGG + chr5.4:59158992-59159011 MS.gene26272:CDS 30.0%
! ATGCCAATGAAGAAGTTTTA+TGG + chr5.4:59158782-59158801 MS.gene26272:CDS 30.0%
! GTCAAAATAACTTGTGCTTA+AGG - chr5.4:59157339-59157358 None:intergenic 30.0%
! TATAAAGCACTTACAATAGG+TGG + chr5.4:59158991-59159010 MS.gene26272:CDS 30.0%
! TTTTAATGAGAATGCTTGAG+AGG - chr5.4:59157523-59157542 None:intergenic 30.0%
!! TGCCAATGAAGAAGTTTTAT+GGG + chr5.4:59158783-59158802 MS.gene26272:CDS 30.0%
AACGATATAAAACTTGCAGC+TGG + chr5.4:59158373-59158392 MS.gene26272:CDS 35.0%
AATAAGTGACACACAACAAG+AGG + chr5.4:59157829-59157848 MS.gene26272:CDS 35.0%
ATTATTGGACTTACCGTCTT+AGG + chr5.4:59158736-59158755 MS.gene26272:CDS 35.0%
ATTTCATCTGCACATTCAAG+AGG + chr5.4:59158082-59158101 MS.gene26272:CDS 35.0%
CATCATTGGTGCAATTCTAA+TGG + chr5.4:59157961-59157980 MS.gene26272:CDS 35.0%
CCATAAGCTAATGCAAATGA+AGG - chr5.4:59158238-59158257 None:intergenic 35.0%
CTGGTATATCTGTAATAGCT+TGG + chr5.4:59159031-59159050 MS.gene26272:CDS 35.0%
GAGCTCACACATATAATATG+TGG - chr5.4:59157228-59157247 None:intergenic 35.0%
GATATTCATACAAGAGGACT+TGG + chr5.4:59157805-59157824 MS.gene26272:CDS 35.0%
TCATTGGTGCAATTCTAATG+GGG + chr5.4:59157963-59157982 MS.gene26272:CDS 35.0%
TGAAACTAAAGGTAAGACCT+TGG + chr5.4:59159077-59159096 MS.gene26272:CDS 35.0%
TGTATTTGTGGTATAGGTGT+TGG + chr5.4:59158022-59158041 MS.gene26272:CDS 35.0%
TTACCTCAAAAGTCTCATCA+AGG + chr5.4:59158430-59158449 MS.gene26272:CDS 35.0%
TTATTGGACTTACCGTCTTA+GGG + chr5.4:59158737-59158756 MS.gene26272:CDS 35.0%
TTGGTTATGCAAGGTCAATT+AGG + chr5.4:59158289-59158308 MS.gene26272:CDS 35.0%
TTGTGTTGGATATGTTTCCA+TGG - chr5.4:59159154-59159173 None:intergenic 35.0%
! AACCTTTTGCTTGCAACAAT+TGG + chr5.4:59158616-59158635 MS.gene26272:CDS 35.0%
! AAGGTCTTACCTTTAGTTTC+AGG - chr5.4:59159078-59159097 None:intergenic 35.0%
! ATTTGAGTTTGAAGCTTGGT+TGG + chr5.4:59158185-59158204 MS.gene26272:CDS 35.0%
! CCTTCATTTGCATTAGCTTA+TGG + chr5.4:59158235-59158254 MS.gene26272:CDS 35.0%
! TAAAGCACTTACAATAGGTG+GGG + chr5.4:59158993-59159012 MS.gene26272:CDS 35.0%
! TGGATGTTGATTGCTTCAAT+TGG + chr5.4:59158502-59158521 MS.gene26272:CDS 35.0%
! TTAAACCTATGTGCATTGGT+AGG + chr5.4:59157866-59157885 MS.gene26272:CDS 35.0%
AACTAAAGGTAAGACCTTGG+AGG + chr5.4:59159080-59159099 MS.gene26272:CDS 40.0%
AATACAAAGCTCAGGCAAAG+AGG - chr5.4:59158116-59158135 None:intergenic 40.0%
AGATTATTGCAAGTCAGCAC+TGG + chr5.4:59158706-59158725 MS.gene26272:CDS 40.0%
ATTACCATAACCAGACACGA+TGG - chr5.4:59157084-59157103 None:intergenic 40.0%
CAAAAGTCTCATCAAGGTGA+AGG + chr5.4:59158436-59158455 MS.gene26272:CDS 40.0%
CACCAATTGTTGCAAGCAAA+AGG - chr5.4:59158621-59158640 None:intergenic 40.0%
CATAGAAAACCAAGTGACCA+AGG + chr5.4:59157013-59157032 MS.gene26272:CDS 40.0%
CCAATACCAATACAAAGCTC+AGG - chr5.4:59158124-59158143 None:intergenic 40.0%
GAACTATAGAGCCAAGTTAC+AGG - chr5.4:59158871-59158890 None:intergenic 40.0%
GGATACCATTGAAGCAACAA+TGG - chr5.4:59157063-59157082 None:intergenic 40.0%
GGCCCATAAAACTTCTTCAT+TGG - chr5.4:59158788-59158807 None:intergenic 40.0%
GTATTGGAGTTGCTGTGAAT+AGG + chr5.4:59158929-59158948 MS.gene26272:CDS 40.0%
TAACAATGCCAGAATCACCA+AGG + chr5.4:59158263-59158282 MS.gene26272:CDS 40.0%
TTGCTTGCAACAATTGGTGT+TGG + chr5.4:59158622-59158641 MS.gene26272:CDS 40.0%
! ACCAATGATGAAGAGTACAG+AGG - chr5.4:59157951-59157970 None:intergenic 40.0%
! AGCACTGGAGGAATGATTAT+TGG + chr5.4:59158721-59158740 MS.gene26272:CDS 40.0%
! ATTTGTTGACCTTGGTCACT+TGG - chr5.4:59157025-59157044 None:intergenic 40.0%
! CCTGAGCTTTGTATTGGTAT+TGG + chr5.4:59158121-59158140 MS.gene26272:CDS 40.0%
! TCACCTTGATGAGACTTTTG+AGG - chr5.4:59158436-59158455 None:intergenic 40.0%
! TCTTTGCCTGAGCTTTGTAT+TGG + chr5.4:59158115-59158134 MS.gene26272:CDS 40.0%
! TTGTGCCATTGTTGCTTCAA+TGG + chr5.4:59157055-59157074 MS.gene26272:CDS 40.0%
! TTTGAAGTTAAGGGCACAAG+GGG + chr5.4:59158903-59158922 MS.gene26272:CDS 40.0%
!! AAGTGGTAAAAGTGTTGCCA+TGG + chr5.4:59159134-59159153 MS.gene26272:CDS 40.0%
!! CTTTGAAGTTAAGGGCACAA+GGG + chr5.4:59158902-59158921 MS.gene26272:CDS 40.0%
!! TCAGATACTGGTGTTATGAG+TGG + chr5.4:59157776-59157795 MS.gene26272:intron 40.0%
!!! AGGTGTTGGTTTTGCTCTTA+TGG + chr5.4:59158036-59158055 MS.gene26272:CDS 40.0%
!!! CATTTTTTCGAGCATGCAAC+TGG + chr5.4:59158529-59158548 MS.gene26272:CDS 40.0%
AAGAGTCTCCATTTCCTCCA+AGG - chr5.4:59159097-59159116 None:intergenic 45.0%
AGGATCCTACCAATGCACAT+AGG - chr5.4:59157874-59157893 None:intergenic 45.0%
AGGTAAGACCTTGGAGGAAA+TGG + chr5.4:59159086-59159105 MS.gene26272:CDS 45.0%
ATCAACATCCAACGTACAGC+AGG - chr5.4:59158493-59158512 None:intergenic 45.0%
ATGATCGGGCGATGTATTTG+TGG + chr5.4:59158010-59158029 MS.gene26272:CDS 45.0%
CATATTATATGCAGGGGCAG+GGG + chr5.4:59157177-59157196 MS.gene26272:intron 45.0%
CCTTGTGCCCTTAACTTCAA+AGG - chr5.4:59158904-59158923 None:intergenic 45.0%
CTTAGGGTTCAGCTTGACAA+TGG + chr5.4:59158753-59158772 MS.gene26272:CDS 45.0%
GCATATTATATGCAGGGGCA+GGG + chr5.4:59157176-59157195 MS.gene26272:intron 45.0%
GCCTCTGTACTCTTCATCAT+TGG + chr5.4:59157947-59157966 MS.gene26272:CDS 45.0%
GGAAGATGCTCCGATTACAT+CGG + chr5.4:59157902-59157921 MS.gene26272:CDS 45.0%
GGGCGATGTATTTGTGGTAT+AGG + chr5.4:59158016-59158035 MS.gene26272:CDS 45.0%
GGTGCAATTCTAATGGGGTA+TGG + chr5.4:59157968-59157987 MS.gene26272:CDS 45.0%
GTATCCATCGTGTCTGGTTA+TGG + chr5.4:59157077-59157096 MS.gene26272:intron 45.0%
TCAATGGTATCCATCGTGTC+TGG + chr5.4:59157071-59157090 MS.gene26272:CDS 45.0%
TGCATATTATATGCAGGGGC+AGG + chr5.4:59157175-59157194 MS.gene26272:intron 45.0%
TGTCAAGCTGAACCCTAAGA+CGG - chr5.4:59158752-59158771 None:intergenic 45.0%
TTGGTAGGATCCTTAACAGC+AGG + chr5.4:59157881-59157900 MS.gene26272:CDS 45.0%
! ACACAACAAGAGGTTCTAGC+AGG + chr5.4:59157839-59157858 MS.gene26272:CDS 45.0%
! TTATTGCAAGTCAGCACTGG+AGG + chr5.4:59158709-59158728 MS.gene26272:CDS 45.0%
!! CCTTTGAAGTTAAGGGCACA+AGG + chr5.4:59158901-59158920 MS.gene26272:CDS 45.0%
!! CTCATCAAGGTGAAGGTGTT+TGG + chr5.4:59158443-59158462 MS.gene26272:CDS 45.0%
!! GGGGCATTTTTCATGTTTGC+TGG + chr5.4:59159012-59159031 MS.gene26272:CDS 45.0%
AGCCTAGTAGCCTAAGCTAG+TGG - chr5.4:59157254-59157273 None:intergenic 50.0%
AGGGTTCAGCTTGACAATGG+TGG + chr5.4:59158756-59158775 MS.gene26272:CDS 50.0%
ATCCAACGTACAGCAGGTGT+TGG - chr5.4:59158487-59158506 None:intergenic 50.0%
CAATGCCAGAATCACCAAGG+TGG + chr5.4:59158266-59158285 MS.gene26272:CDS 50.0%
CCTTGCATAACCAACCACCT+TGG - chr5.4:59158283-59158302 None:intergenic 50.0%
GTAGCGACGACCGATGTAAT+CGG - chr5.4:59157915-59157934 None:intergenic 50.0%
TAGGGCTTGCACCTGTAACT+TGG + chr5.4:59158857-59158876 MS.gene26272:CDS 50.0%
! ACCAACCACCTTGGTGATTC+TGG - chr5.4:59158274-59158293 None:intergenic 50.0%
! AGCCACTAGCTTAGGCTACT+AGG + chr5.4:59157249-59157268 MS.gene26272:intron 50.0%
! AGGGCACAAGGGGTTAGTAT+TGG + chr5.4:59158913-59158932 MS.gene26272:CDS 50.0%
! CCAAGGTGGTTGGTTATGCA+AGG + chr5.4:59158280-59158299 MS.gene26272:CDS 50.0%
! GGAGCATCTTCCTGCTGTTA+AGG - chr5.4:59157894-59157913 None:intergenic 50.0%
! TGAGCTCTAGCCACTAGCTT+AGG + chr5.4:59157241-59157260 MS.gene26272:intron 50.0%
GACCAACACCTGCTGTACGT+TGG + chr5.4:59158482-59158501 MS.gene26272:CDS 55.0%
GCCAGAATCACCAAGGTGGT+TGG + chr5.4:59158270-59158289 MS.gene26272:CDS 55.0%
! ATGTGGAGAAGTGGGGTGTC+TGG - chr5.4:59157211-59157230 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 59156993 59159176 59156993 ID=MS.gene26272
chr5.4 mRNA 59156993 59159176 59156993 ID=MS.gene26272.t1;Parent=MS.gene26272
chr5.4 exon 59156993 59157092 59156993 ID=MS.gene26272.t1.exon1;Parent=MS.gene26272.t1
chr5.4 CDS 59156993 59157092 59156993 ID=cds.MS.gene26272.t1;Parent=MS.gene26272.t1
chr5.4 exon 59157780 59159176 59157780 ID=MS.gene26272.t1.exon2;Parent=MS.gene26272.t1
chr5.4 CDS 59157780 59159176 59157780 ID=cds.MS.gene26272.t1;Parent=MS.gene26272.t1
Gene Sequence

>MS.gene26272

ATGATAGATAATCAAGGTGACATAGAAAACCAAGTGACCAAGGTCAACAAATATGCTTTTGCTTGTGCCATTGTTGCTTCAATGGTATCCATCGTGTCTGGTTATGGTAATATTACTATTACATTCTCTATTCTCTCTCACTTTTACTTTTATTGAGGAAACGCTAATTTATGTAAGGATATTGCATATTATATGCAGGGGCAGGGGTTCGAACTCCAGACACCCCACTTCTCCACATATTATATGTGTGAGCTCTAGCCACTAGCTTAGGCTACTAGGCTTCTTGAAAAATGTGTATTCAATTTTACAAAAGTTTTTTTATACAAAATTTATTTCTTATTTCCCTTAAGCACAAGTTATTTTGACCCTTGTTTAATTTTCCTGTCATCTATGAGTTTAAAAATCAAGGTTTTTTTTTTTTTGTTTTCCCTTAAGTGGATTCTAATCTAATATATATATATATATATATATATATATATATATATATATATATATATTAAAAATACATATGAAGGTATATTTCAAGGCCTCTCAAGCATTCTCATTAAAAAATTGCTTGTGTGGTATCGTTTTAGACCTTCCAAAAAAAGTATTATTTTGTGAACATCTAGGAAAATATTAATAATCGTGAAAACAAAAAAAAAATACCATAATAAAAGACACTAAATATATTTTTAGTACTTTCAAAATTGTCTGCTTTTAACAATAGGCATAGTTAGTGGCATTGTATAAATAAATACACACTTGATAAATATTTTTAACCCTAACTATTCTACATATATTTCAGATACTGGTGTTATGAGTGGAGCAATGATATTCATACAAGAGGACTTGGGAATAAGTGACACACAACAAGAGGTTCTAGCAGGAATCTTAAACCTATGTGCATTGGTAGGATCCTTAACAGCAGGAAGATGCTCCGATTACATCGGTCGTCGCTACACAATCTTCTTAGCCTCTGTACTCTTCATCATTGGTGCAATTCTAATGGGGTATGGTCCAAATTACGCAATTTTAATGATCGGGCGATGTATTTGTGGTATAGGTGTTGGTTTTGCTCTTATGGTAGCACCAGTTTATTCAGCAGAAATTTCATCTGCACATTCAAGAGGTCTTTTAGCCTCTTTGCCTGAGCTTTGTATTGGTATTGGAATTTTTTTGGGTTATTTATCAAACTATTTTTTGGGAAAATATTTGAGTTTGAAGCTTGGTTGGAGATTAATGCTTGCTATTGCAGCTATTCCTTCATTTGCATTAGCTTATGGCATTTTAACAATGCCAGAATCACCAAGGTGGTTGGTTATGCAAGGTCAATTAGGAAAAGCCAAAAAAGTTTTATTTCAAGTTTCAAATACAACACAAGAAGCCGAACTTCGTTTTAACGATATAAAACTTGCAGCTGGTTTAGACGAGAATTGCAACGACGAAATCGTGAAATTACCTCAAAAGTCTCATCAAGGTGAAGGTGTTTGGAAAGAGTTGATTTTAAGACCAACACCTGCTGTACGTTGGATGTTGATTGCTTCAATTGGAATACATTTTTTCGAGCATGCAACTGGAATTGAAGCTGTTATGTTATATAGTCATAAAATATTTAAAAAAGCTGGCATTAAAAGTAAAGAGAACCTTTTGCTTGCAACAATTGGTGTTGGATTAACAAAGATTATTTTTCTTGTAATTGCTTTATTTTTGCTTGATAAAGTTGGTAGAAGAAGATTATTGCAAGTCAGCACTGGAGGAATGATTATTGGACTTACCGTCTTAGGGTTCAGCTTGACAATGGTGGAGCATGCCAATGAAGAAGTTTTATGGGCCTTAACACTTAGTATTATAGCAACATATTTCTATGTTGCTTTCTTTAATATAGGGCTTGCACCTGTAACTTGGCTCTATAGTTCTGAGATATTTCCTTTGAAGTTAAGGGCACAAGGGGTTAGTATTGGAGTTGCTGTGAATAGGTCAATGAATGCTGCTGTTTCCATGAGTTTTATTTCAATCTATAAAGCACTTACAATAGGTGGGGCATTTTTCATGTTTGCTGGTATATCTGTAATAGCTTGGGTTTTTTTCTATTTTCTTGTTCCTGAAACTAAAGGTAAGACCTTGGAGGAAATGGAGACTCTTTTTACCAAAAAAAACAAAAGTGGTAAAAGTGTTGCCATGGAAACATATCCAACACAATAG

Protein sequence

>MS.gene26272.t1

MIDNQGDIENQVTKVNKYAFACAIVASMVSIVSDTGVMSGAMIFIQEDLGISDTQQEVLAGILNLCALVGSLTAGRCSDYIGRRYTIFLASVLFIIGAILMGYGPNYAILMIGRCICGIGVGFALMVAPVYSAEISSAHSRGLLASLPELCIGIGIFLGYLSNYFLGKYLSLKLGWRLMLAIAAIPSFALAYGILTMPESPRWLVMQGQLGKAKKVLFQVSNTTQEAELRFNDIKLAAGLDENCNDEIVKLPQKSHQGEGVWKELILRPTPAVRWMLIASIGIHFFEHATGIEAVMLYSHKIFKKAGIKSKENLLLATIGVGLTKIIFLVIALFLLDKVGRRRLLQVSTGGMIIGLTVLGFSLTMVEHANEEVLWALTLSIIATYFYVAFFNIGLAPVTWLYSSEIFPLKLRAQGVSIGVAVNRSMNAAVSMSFISIYKALTIGGAFFMFAGISVIAWVFFYFLVPETKGKTLEEMETLFTKKNKSGKSVAMETYPTQ