Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90965.t1 | RHN61519.1 | 90.6 | 385 | 29 | 3 | 39 | 422 | 1 | 379 | 2.30E-135 | 492.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90965.t1 | Q9SZP8 | 54.0 | 409 | 145 | 14 | 40 | 421 | 3 | 395 | 2.0e-63 | 244.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90965.t1 | A0A396I7C0 | 90.6 | 385 | 29 | 3 | 39 | 422 | 1 | 379 | 1.7e-135 | 492.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene90965 | 0.850838 | 1.31E-60 | -1.69E-46 |
| MS.gene049166 | MS.gene90965 | 0.814571 | 1.44E-51 | -1.69E-46 |
| MS.gene04917 | MS.gene90965 | 0.853594 | 2.15E-61 | -1.69E-46 |
| MS.gene049685 | MS.gene90965 | 0.813152 | 2.96E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene90965 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene050085 | MS.gene90965 | 0.805201 | 1.50E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene90965 | 0.829631 | 4.62E-55 | -1.69E-46 |
| MS.gene050317 | MS.gene90965 | 0.829546 | 4.85E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene90965 | 0.823328 | 1.47E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene90965 | 0.807136 | 5.86E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene90965 | 0.846365 | 2.27E-59 | -1.69E-46 |
| MS.gene050941 | MS.gene90965 | 0.834694 | 2.58E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene90965 | 0.838758 | 2.38E-57 | -1.69E-46 |
| MS.gene051233 | MS.gene90965 | 0.823401 | 1.41E-53 | -1.69E-46 |
| MS.gene051245 | MS.gene90965 | 0.819302 | 1.25E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene90965 | 0.819078 | 1.40E-52 | -1.69E-46 |
| MS.gene051381 | MS.gene90965 | 0.803065 | 4.16E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene90965 | 0.803499 | 3.39E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene90965 | 0.816023 | 6.85E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene90965 | 0.835982 | 1.22E-56 | -1.69E-46 |
| MS.gene053109 | MS.gene90965 | 0.802281 | 6.04E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene90965 | 0.806893 | 6.59E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene90965 | 0.802853 | 4.61E-49 | -1.69E-46 |
| MS.gene054823 | MS.gene90965 | 0.815872 | 7.40E-52 | -1.69E-46 |
| MS.gene055311 | MS.gene90965 | 0.815511 | 8.91E-52 | -1.69E-46 |
| MS.gene056097 | MS.gene90965 | 0.845914 | 3.02E-59 | -1.69E-46 |
| MS.gene056181 | MS.gene90965 | 0.841574 | 4.37E-58 | -1.69E-46 |
| MS.gene056580 | MS.gene90965 | 0.808565 | 2.91E-50 | -1.69E-46 |
| MS.gene056752 | MS.gene90965 | 0.859165 | 4.99E-63 | -1.69E-46 |
| MS.gene056787 | MS.gene90965 | 0.848938 | 4.45E-60 | -1.69E-46 |
| MS.gene056831 | MS.gene90965 | 0.807736 | 4.37E-50 | -1.69E-46 |
| MS.gene056849 | MS.gene90965 | 0.828191 | 1.03E-54 | -1.69E-46 |
| MS.gene056992 | MS.gene90965 | 0.81735 | 3.45E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene90965 | 0.810082 | 1.38E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene90965 | 0.823001 | 1.75E-53 | -1.69E-46 |
| MS.gene057451 | MS.gene90965 | -0.809838 | 1.55E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene90965 | -0.853278 | 2.66E-61 | -1.69E-46 |
| MS.gene057721 | MS.gene90965 | 0.838516 | 2.75E-57 | -1.69E-46 |
| MS.gene05781 | MS.gene90965 | 0.870003 | 2.03E-66 | -1.69E-46 |
| MS.gene057890 | MS.gene90965 | -0.805104 | 1.57E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene90965 | 0.801555 | 8.52E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene90965 | 0.823714 | 1.19E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene90965 | 0.806954 | 6.40E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene90965 | 0.8175 | 3.19E-52 | -1.69E-46 |
| MS.gene058261 | MS.gene90965 | 0.800842 | 1.19E-48 | -1.69E-46 |
| MS.gene058278 | MS.gene90965 | 0.80635 | 8.59E-50 | -1.69E-46 |
| MS.gene058438 | MS.gene90965 | 0.802481 | 5.50E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene90965 | 0.800287 | 1.55E-48 | -1.69E-46 |
| MS.gene058646 | MS.gene90965 | 0.8398 | 1.28E-57 | -1.69E-46 |
| MS.gene058654 | MS.gene90965 | 0.852707 | 3.87E-61 | -1.69E-46 |
| MS.gene058758 | MS.gene90965 | 0.806879 | 6.64E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene90965 | 0.820735 | 5.86E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene90965 | 0.80402 | 2.64E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene90965 | 0.824956 | 6.09E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene90965 | 0.80434 | 2.26E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene90965 | 0.83157 | 1.55E-55 | -1.69E-46 |
| MS.gene060465 | MS.gene90965 | 0.800219 | 1.60E-48 | -1.69E-46 |
| MS.gene060563 | MS.gene90965 | 0.849808 | 2.55E-60 | -1.69E-46 |
| MS.gene060869 | MS.gene90965 | 0.815583 | 8.58E-52 | -1.69E-46 |
| MS.gene060870 | MS.gene90965 | 0.81161 | 6.42E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene90965 | 0.812416 | 4.29E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene90965 | 0.814382 | 1.59E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90965.t1 | MTR_4g074040 | 96.615 | 384 | 6 | 3 | 39 | 421 | 1 | 378 | 0.0 | 719 |
| MS.gene90965.t1 | MTR_8g089785 | 37.500 | 320 | 141 | 11 | 77 | 377 | 33 | 312 | 5.61e-26 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90965.t1 | AT4G38710 | 50.355 | 423 | 148 | 15 | 39 | 424 | 1 | 398 | 3.93e-80 | 254 |
| MS.gene90965.t1 | AT4G38710 | 51.225 | 408 | 137 | 15 | 39 | 409 | 1 | 383 | 1.37e-79 | 254 |
| MS.gene90965.t1 | AT3G26400 | 30.986 | 355 | 176 | 11 | 81 | 377 | 38 | 381 | 6.71e-17 | 83.2 |
Find 164 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATGGTGGTGTTGTTTC+TGG | 0.171573 | 4.2:+34650506 | MS.gene90965:CDS |
| GGGGTTCTGGTTCGGGTTCT+AGG | 0.179677 | 4.2:+34650015 | MS.gene90965:CDS |
| TATTGCATCCAAAACGTTAT+TGG | 0.186162 | 4.2:-34650792 | None:intergenic |
| GTGTTGGTGGTGGGTTTGAT+AGG | 0.223609 | 4.2:+34650285 | MS.gene90965:CDS |
| GAGAGAGGTGGAGGTGGAGG+TGG | 0.250977 | 4.2:+34650170 | MS.gene90965:CDS |
| AAGGCCAAGGGAGCAGGTTT+TGG | 0.279830 | 4.2:+34650571 | MS.gene90965:CDS |
| TCGAGATGGGGTTCTGGTTC+GGG | 0.281585 | 4.2:+34650008 | MS.gene90965:CDS |
| TCTGGTGGTGGTGTTGGTGG+TGG | 0.292406 | 4.2:+34650275 | MS.gene90965:CDS |
| ACTGCAGTGGTTGAAGGATT+TGG | 0.315084 | 4.2:+34650656 | MS.gene90965:CDS |
| AGAGAATCGAGTCGTGATTC+GGG | 0.316526 | 4.2:+34650071 | MS.gene90965:CDS |
| TGCAGTCTCCTTAATCTTCA+TGG | 0.319993 | 4.2:-34650639 | None:intergenic |
| GGATTTGGAAAGAGGGGTTT+TGG | 0.320358 | 4.2:+34650671 | MS.gene90965:CDS |
| TTCGAGATGGGGTTCTGGTT+CGG | 0.320995 | 4.2:+34650007 | MS.gene90965:CDS |
| GTTTGTTACCAATAACGTTT+TGG | 0.324506 | 4.2:+34650784 | MS.gene90965:CDS |
| CTGGTGGTGGTGTTGGTGGT+GGG | 0.336609 | 4.2:+34650276 | MS.gene90965:CDS |
| AGAAGGGAGAGAGGTGGAGG+TGG | 0.338435 | 4.2:+34650164 | MS.gene90965:CDS |
| GGGCTGATGAGATTGATAAT+TGG | 0.339903 | 4.2:+34650102 | MS.gene90965:CDS |
| AGGGAGAGAGGTGGAGGTGG+AGG | 0.344195 | 4.2:+34650167 | MS.gene90965:CDS |
| GCTTGAGACCATGAAGATTA+AGG | 0.344368 | 4.2:+34650631 | MS.gene90965:CDS |
| TTTGGTTCTGGTGGTGGTGT+TGG | 0.351519 | 4.2:+34650269 | MS.gene90965:CDS |
| TAGAGAATCGAGTCGTGATT+CGG | 0.353727 | 4.2:+34650070 | MS.gene90965:CDS |
| CTTACGGTGACCGTGGTGAT+AGG | 0.358784 | 4.2:+34649955 | MS.gene90965:CDS |
| TCTGTTTCGAGATGGGGTTC+TGG | 0.360395 | 4.2:+34650002 | MS.gene90965:CDS |
| CCATCGGAGGGACGGAGATT+TGG | 0.361330 | 4.2:+34650251 | MS.gene90965:CDS |
| TAAACCGGTTTCTTCTTATA+CGG | 0.361675 | 4.2:+34649839 | MS.gene90965:CDS |
| GTGGTGCGGATTCGGATAAT+TGG | 0.371012 | 4.2:+34650336 | MS.gene90965:CDS |
| GGTTCTGGTGGTGGTGTTGG+TGG | 0.373335 | 4.2:+34650272 | MS.gene90965:CDS |
| CAGTGAACTCAGCCAAACTT+AGG | 0.376657 | 4.2:-34649815 | None:intergenic |
| ATCGATTTGAGAGGAGTTGG+AGG | 0.377945 | 4.2:+34650717 | MS.gene90965:CDS |
| CGGAGATTTGGTTCTGGTGG+TGG | 0.383874 | 4.2:+34650263 | MS.gene90965:CDS |
| GTGGTGGTGGTGGAAGGCCT+AGG | 0.384246 | 4.2:+34650420 | MS.gene90965:CDS |
| AAAGTAGGGTTTGGTGTTAG+TGG | 0.385027 | 4.2:+34650314 | MS.gene90965:CDS |
| TTCTTATACGGCTCAAGATC+CGG | 0.391165 | 4.2:+34649851 | MS.gene90965:CDS |
| GGATAGTTGGGTTTCGAGTA+AGG | 0.394999 | 4.2:+34650226 | MS.gene90965:CDS |
| GAAAGCACAAACCCTAAGTT+TGG | 0.395026 | 4.2:+34649803 | MS.gene90965:CDS |
| TCAGCCAAAACCTGCTCCCT+TGG | 0.399465 | 4.2:-34650575 | None:intergenic |
| AGAAGACTGTTGTTGGGAAT+GGG | 0.399511 | 4.2:+34650135 | MS.gene90965:CDS |
| GGTTCTAGGGTTTCTGAGGA+TGG | 0.401684 | 4.2:+34650029 | MS.gene90965:CDS |
| AAGTTCAGCTTCGTGTTCTT+CGG | 0.404600 | 4.2:-34649685 | None:intergenic |
| TGGGAATGGGTTTGAGAGAA+GGG | 0.407540 | 4.2:+34650148 | MS.gene90965:CDS |
| GGCTGATGGATCGGATAGTT+GGG | 0.409771 | 4.2:+34650214 | MS.gene90965:CDS |
| AAGTGCCCATGCACCTGGTT+TGG | 0.409980 | 4.2:-34649658 | None:intergenic |
| TTTGATAGGGAGAGGAAAGT+AGG | 0.414560 | 4.2:+34650299 | MS.gene90965:CDS |
| GCCGGTGAGTAATGAAAATC+AGG | 0.418244 | 4.2:+34650466 | MS.gene90965:CDS |
| GGGCTGATGGATCGGATAGT+TGG | 0.418883 | 4.2:+34650213 | MS.gene90965:CDS |
| GAGAGAAGGGAGAGAGGTGG+AGG | 0.422798 | 4.2:+34650161 | MS.gene90965:CDS |
| AACCGCTGAGGAACTTGAAC+GGG | 0.429895 | 4.2:+34649902 | MS.gene90965:CDS |
| TCTGAGGATGGGAGAAGGAA+TGG | 0.430363 | 4.2:+34650041 | MS.gene90965:CDS |
| AAGAAGACTGTTGTTGGGAA+TGG | 0.438952 | 4.2:+34650134 | MS.gene90965:CDS |
| AAGATCGATTTGAGAGGAGT+TGG | 0.439369 | 4.2:+34650714 | MS.gene90965:CDS |
| CTGAGGATGGGAGAAGGAAT+GGG | 0.440534 | 4.2:+34650042 | MS.gene90965:CDS |
| TTGATAGGGAGAGGAAAGTA+GGG | 0.443677 | 4.2:+34650300 | MS.gene90965:CDS |
| AAGGAGACTGCAGTGGTTGA+AGG | 0.444170 | 4.2:+34650650 | MS.gene90965:CDS |
| TGAGGCAAGGCCAAGGGAGC+AGG | 0.446100 | 4.2:+34650565 | MS.gene90965:CDS |
| GGCTGAGTTCACTGCTAAAC+CGG | 0.448280 | 4.2:+34649824 | MS.gene90965:CDS |
| TGTTAGTGGTGGTGCGGATT+CGG | 0.449936 | 4.2:+34650328 | MS.gene90965:CDS |
| TGTTGGTGGTGGGTTTGATA+GGG | 0.451230 | 4.2:+34650286 | MS.gene90965:CDS |
| CTTGGCCTTGCCTCACCAAA+CGG | 0.452219 | 4.2:-34650557 | None:intergenic |
| AGGGAATTCAGCAAGTGGTT+TGG | 0.453142 | 4.2:-34649742 | None:intergenic |
| AGCGGTTCGCTGACGTGGAC+CGG | 0.454562 | 4.2:-34649886 | None:intergenic |
| TGAGAGTTCTGTTTCGAGAT+GGG | 0.454620 | 4.2:+34649995 | MS.gene90965:CDS |
| AGAGAGGTGGAGGTGGAGGT+GGG | 0.455658 | 4.2:+34650171 | MS.gene90965:CDS |
| GGCTGATGAGATTGATAATT+GGG | 0.455921 | 4.2:+34650103 | MS.gene90965:CDS |
| ACGGCAGTGGTGGTGGTGGA+AGG | 0.456467 | 4.2:+34650414 | MS.gene90965:CDS |
| GGGTTTGAGAGAAGGGAGAG+AGG | 0.458141 | 4.2:+34650155 | MS.gene90965:CDS |
| TCCTCAGCGGTTCGCTGACG+TGG | 0.458250 | 4.2:-34649891 | None:intergenic |
| GCTGGGAAGAAGACTGTTGT+TGG | 0.463116 | 4.2:+34650128 | MS.gene90965:CDS |
| TTACTCACCGGCGCTGTTCG+TGG | 0.468433 | 4.2:-34650455 | None:intergenic |
| TTGGGAATGGGTTTGAGAGA+AGG | 0.473730 | 4.2:+34650147 | MS.gene90965:CDS |
| CTAATGGTGGTGTTGTTTCT+GGG | 0.473999 | 4.2:+34650507 | MS.gene90965:CDS |
| AGTGAACTCAGCCAAACTTA+GGG | 0.476224 | 4.2:-34649814 | None:intergenic |
| GAGGGACGGAGATTTGGTTC+TGG | 0.476898 | 4.2:+34650257 | MS.gene90965:CDS |
| GTTGGTAACGGCAGTGGTGG+TGG | 0.477421 | 4.2:+34650407 | MS.gene90965:CDS |
| GATTCGCAGTCACGGGCTGA+TGG | 0.478762 | 4.2:+34650200 | MS.gene90965:CDS |
| GAGATTGATAATTGGGCTGC+TGG | 0.479488 | 4.2:+34650110 | MS.gene90965:CDS |
| AACTTGAACGGGACCGGACT+AGG | 0.483014 | 4.2:+34649913 | MS.gene90965:CDS |
| AGGGAGAGGAAAGTAGGGTT+TGG | 0.486006 | 4.2:+34650305 | MS.gene90965:CDS |
| TGGTTGAAGGATTTGGAAAG+AGG | 0.486516 | 4.2:+34650663 | MS.gene90965:CDS |
| GGGTTCTGGTTCGGGTTCTA+GGG | 0.490463 | 4.2:+34650016 | MS.gene90965:CDS |
| TCGTGATTCGGGGCCGTCGA+GGG | 0.496272 | 4.2:+34650082 | MS.gene90965:CDS |
| CTGAGGAACTTGAACGGGAC+CGG | 0.496953 | 4.2:+34649907 | MS.gene90965:CDS |
| CCATCATCAGATGGTGATGA+TGG | 0.497883 | 4.2:-34650749 | None:intergenic |
| GAATCAAGTGCCCATGCACC+TGG | 0.498322 | 4.2:-34649663 | None:intergenic |
| CCTAAGGGTGCAAATCCGTT+TGG | 0.499343 | 4.2:+34650542 | MS.gene90965:CDS |
| GGACCGGTGGGAAGATCAAC+CGG | 0.500535 | 4.2:-34649870 | None:intergenic |
| CTTGGTCCAAACCAGGTGCA+TGG | 0.500565 | 4.2:+34649652 | MS.gene90965:CDS |
| TGGCTGAGAAAGGTCAGGAT+TGG | 0.507073 | 4.2:+34650591 | MS.gene90965:CDS |
| TTTGAGAGAAGGGAGAGAGG+TGG | 0.508237 | 4.2:+34650158 | MS.gene90965:CDS |
| TTTGGTTCTGGCAATGGACG+CGG | 0.512581 | 4.2:+34650689 | MS.gene90965:CDS |
| GGTTGAAGGATTTGGAAAGA+GGG | 0.514378 | 4.2:+34650664 | MS.gene90965:CDS |
| AAGAAAGGTGAATTCAGTGT+TGG | 0.515274 | 4.2:+34650365 | MS.gene90965:CDS |
| CGTGGCTGCAAAACAAGCCT+AGG | 0.524153 | 4.2:-34650437 | None:intergenic |
| CTGGGAAGAAGACTGTTGTT+GGG | 0.525187 | 4.2:+34650129 | MS.gene90965:CDS |
| GAACGGGACCGGACTAGGAT+TGG | 0.526589 | 4.2:+34649918 | MS.gene90965:CDS |
| GCTGTTGCTACTAATACTAA+TGG | 0.527495 | 4.2:+34650491 | MS.gene90965:CDS |
| TGGGAATATAGCTAAGCCTA+AGG | 0.529688 | 4.2:+34650526 | MS.gene90965:CDS |
| ATGAGAGTTCTGTTTCGAGA+TGG | 0.535167 | 4.2:+34649994 | MS.gene90965:CDS |
| TTTGGTTTCAACAACGTTGT+TGG | 0.536441 | 4.2:-34649724 | None:intergenic |
| AACCACCACCAATCCTAGTC+CGG | 0.537944 | 4.2:-34649926 | None:intergenic |
| CCAAACGGATTTGCACCCTT+AGG | 0.541287 | 4.2:-34650542 | None:intergenic |
| GATAATTGGAATAAGAAGAA+AGG | 0.541335 | 4.2:+34650350 | MS.gene90965:CDS |
| TTTGCAGCCACGAACAGCGC+CGG | 0.544041 | 4.2:+34650448 | MS.gene90965:CDS |
| GTGGTGGGTTTGATAGGGAG+AGG | 0.544767 | 4.2:+34650291 | MS.gene90965:CDS |
| TGAGCCGTATAAGAAGAAAC+CGG | 0.545095 | 4.2:-34649843 | None:intergenic |
| GAGAATGTTGGTAACGGCAG+TGG | 0.545752 | 4.2:+34650401 | MS.gene90965:CDS |
| CGGCGGCAACAGCGAGGGAA+GGG | 0.546251 | 4.2:-34649761 | None:intergenic |
| CCATCATCACCATCTGATGA+TGG | 0.547253 | 4.2:+34650749 | MS.gene90965:CDS |
| GGTAACGGCAGTGGTGGTGG+TGG | 0.549406 | 4.2:+34650410 | MS.gene90965:CDS |
| AGTGAGAGAAACGAGAATGT+TGG | 0.551147 | 4.2:+34650389 | MS.gene90965:CDS |
| GAGAGTTCTGTTTCGAGATG+GGG | 0.551992 | 4.2:+34649996 | MS.gene90965:CDS |
| CTGATGATGGTCGTTCTGAA+AGG | 0.553189 | 4.2:+34650762 | MS.gene90965:CDS |
| GTTCTAGGGTTTCTGAGGAT+GGG | 0.553840 | 4.2:+34650030 | MS.gene90965:CDS |
| TTGGTCCAAACCAGGTGCAT+GGG | 0.554652 | 4.2:+34649653 | MS.gene90965:CDS |
| GGTTCGCTGACGTGGACCGG+TGG | 0.555585 | 4.2:-34649883 | None:intergenic |
| GGTTTCAACAACGTTGTTGG+TGG | 0.557431 | 4.2:-34649721 | None:intergenic |
| GCAGTCACGGGCTGATGGAT+CGG | 0.557550 | 4.2:+34650205 | MS.gene90965:CDS |
| CCAAATCTCCGTCCCTCCGA+TGG | 0.559164 | 4.2:-34650251 | None:intergenic |
| TTACGGTGACCGTGGTGATA+GGG | 0.561308 | 4.2:+34649956 | MS.gene90965:CDS |
| TTCGGGTTCTAGGGTTTCTG+AGG | 0.561999 | 4.2:+34650025 | MS.gene90965:CDS |
| GCGGCGGCAACAGCGAGGGA+AGG | 0.562888 | 4.2:-34649762 | None:intergenic |
| CGTTTGGTGAGGCAAGGCCA+AGG | 0.563020 | 4.2:+34650558 | MS.gene90965:CDS |
| GTATCTGCTTGGTCCAAACC+AGG | 0.566929 | 4.2:+34649645 | MS.gene90965:CDS |
| GTGACCGTGGTGATAGGGAC+AGG | 0.568862 | 4.2:+34649961 | MS.gene90965:CDS |
| GTTGAAGGATTTGGAAAGAG+GGG | 0.569718 | 4.2:+34650665 | MS.gene90965:CDS |
| GTCGTGATTCGGGGCCGTCG+AGG | 0.571331 | 4.2:+34650081 | MS.gene90965:CDS |
| GTAGGGTTTGGTGTTAGTGG+TGG | 0.575486 | 4.2:+34650317 | MS.gene90965:CDS |
| TTCGAGTAAGGTGCCATCGG+AGG | 0.575693 | 4.2:+34650238 | MS.gene90965:CDS |
| TGGCGGCTACTGTATCTGCT+TGG | 0.576953 | 4.2:+34649634 | MS.gene90965:CDS |
| CGGGACCGGACTAGGATTGG+TGG | 0.584241 | 4.2:+34649921 | MS.gene90965:CDS |
| AGATTGATAATTGGGCTGCT+GGG | 0.584666 | 4.2:+34650111 | MS.gene90965:CDS |
| CAAATCCGTTTGGTGAGGCA+AGG | 0.593201 | 4.2:+34650552 | MS.gene90965:CDS |
| GTTTGGTGTTAGTGGTGGTG+CGG | 0.596653 | 4.2:+34650322 | MS.gene90965:CDS |
| GGGTTTCTGAGGATGGGAGA+AGG | 0.596947 | 4.2:+34650036 | MS.gene90965:CDS |
| GTAAGGTGCCATCGGAGGGA+CGG | 0.598505 | 4.2:+34650243 | MS.gene90965:CDS |
| TCGAGTAAGGTGCCATCGGA+GGG | 0.598520 | 4.2:+34650239 | MS.gene90965:CDS |
| GGTTTCGAGTAAGGTGCCAT+CGG | 0.599540 | 4.2:+34650235 | MS.gene90965:CDS |
| GGACGGAGATTTGGTTCTGG+TGG | 0.601916 | 4.2:+34650260 | MS.gene90965:CDS |
| GACCGGACTAGGATTGGTGG+TGG | 0.603483 | 4.2:+34649924 | MS.gene90965:CDS |
| AGGATGGGAGAAGGAATGGG+AGG | 0.603895 | 4.2:+34650045 | MS.gene90965:CDS |
| TGTTGCGGCGGCAACAGCGA+GGG | 0.606576 | 4.2:-34649766 | None:intergenic |
| GGGAATATAGCTAAGCCTAA+GGG | 0.607135 | 4.2:+34650527 | MS.gene90965:CDS |
| GGATGGGAGAAGGAATGGGA+GGG | 0.609433 | 4.2:+34650046 | MS.gene90965:CDS |
| GTTCGCTGACGTGGACCGGT+GGG | 0.613163 | 4.2:-34649882 | None:intergenic |
| GATCCGGTTGATCTTCCCAC+CGG | 0.621219 | 4.2:+34649867 | MS.gene90965:CDS |
| GAACCGCTGAGGAACTTGAA+CGG | 0.623722 | 4.2:+34649901 | MS.gene90965:CDS |
| TTTAGATCTTACGGTGACCG+TGG | 0.625503 | 4.2:+34649948 | MS.gene90965:CDS |
| GTTTGGTGAGGCAAGGCCAA+GGG | 0.627082 | 4.2:+34650559 | MS.gene90965:CDS |
| TCAGAACGACCATCATCAGA+TGG | 0.633335 | 4.2:-34650758 | None:intergenic |
| TTGTTGCGGCGGCAACAGCG+AGG | 0.637895 | 4.2:-34649767 | None:intergenic |
| AATGTTGGTAACGGCAGTGG+TGG | 0.640974 | 4.2:+34650404 | MS.gene90965:CDS |
| GAGAATCGAGTCGTGATTCG+GGG | 0.642199 | 4.2:+34650072 | MS.gene90965:CDS |
| AGAAACGAGAATGTTGGTAA+CGG | 0.642254 | 4.2:+34650395 | MS.gene90965:CDS |
| TCAATCTCATCAGCCCTCGA+CGG | 0.643798 | 4.2:-34650095 | None:intergenic |
| AGGGAAGGGAATTCAGCAAG+TGG | 0.646892 | 4.2:-34649747 | None:intergenic |
| GGGTGCAAATCCGTTTGGTG+AGG | 0.653824 | 4.2:+34650547 | MS.gene90965:CDS |
| TCCACGTCAGCGAACCGCTG+AGG | 0.659911 | 4.2:+34649890 | MS.gene90965:CDS |
| GAACAAAGAGAAAGACAACA+TGG | 0.665002 | 4.2:+34649614 | MS.gene90965:CDS |
| GTTGCTACTAATACTAATGG+TGG | 0.672658 | 4.2:+34650494 | MS.gene90965:CDS |
| GAAGATTAAGGAGACTGCAG+TGG | 0.680724 | 4.2:+34650643 | MS.gene90965:CDS |
| TTGTCCTGTCCCTATCACCA+CGG | 0.681946 | 4.2:-34649965 | None:intergenic |
| GTCCCGTTCAAGTTCCTCAG+CGG | 0.684186 | 4.2:-34649904 | None:intergenic |
| GCGGTGAAGATCGATTTGAG+AGG | 0.702801 | 4.2:+34650708 | MS.gene90965:CDS |
| GTGGTGATAGGGACAGGACA+AGG | 0.703432 | 4.2:+34649967 | MS.gene90965:CDS |
| CAAAGAGAAAGACAACATGG+CGG | 0.794850 | 4.2:+34649617 | MS.gene90965:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGTAATAAATTCTATT+TGG | + | chr4.2:34648696-34648715 | MS.gene90965:intron | 10.0% |
| !! | ATAAAAAATAAAAAAACTGT+TGG | + | chr4.2:34649195-34649214 | MS.gene90965:intron | 10.0% |
| !! | TAATTAATTAATTAAATGAC+GGG | - | chr4.2:34649426-34649445 | None:intergenic | 10.0% |
| !!! | AAGAAATTATTTTAATAAAG+AGG | + | chr4.2:34648873-34648892 | MS.gene90965:intron | 10.0% |
| !!! | ATAGTTTTTTCTTATATTAA+AGG | + | chr4.2:34648634-34648653 | MS.gene90965:intron | 10.0% |
| !! | ATAGAATTTATTACATATTG+AGG | - | chr4.2:34648695-34648714 | None:intergenic | 15.0% |
| !! | ATTTACATTAAAAAGGATAA+GGG | + | chr4.2:34648590-34648609 | MS.gene90965:intron | 15.0% |
| !! | TAGAATTTATTACATATTGA+GGG | - | chr4.2:34648694-34648713 | None:intergenic | 15.0% |
| !!! | TACTTTCTCTAAAAAAAAAT+AGG | + | chr4.2:34648794-34648813 | MS.gene90965:intron | 15.0% |
| !!! | TTTTATATACAAAATTTCTG+TGG | - | chr4.2:34649181-34649200 | None:intergenic | 15.0% |
| !! | AAAAGACAATTTAAGAAAAG+AGG | + | chr4.2:34649100-34649119 | MS.gene90965:intron | 20.0% |
| !! | ATTCTCATACATTGAAAAAT+TGG | - | chr4.2:34648447-34648466 | None:intergenic | 20.0% |
| !! | ATTTACATCAAAAAGGATAA+GGG | + | chr4.2:34648495-34648514 | MS.gene90965:intron | 20.0% |
| !! | GATTTAATCTTAGTTTAATG+AGG | - | chr4.2:34649458-34649477 | None:intergenic | 20.0% |
| !! | GATTTACATTAAAAAGGATA+AGG | + | chr4.2:34648589-34648608 | MS.gene90965:intron | 20.0% |
| !! | TATAAGAAAAAACTATGTTG+TGG | - | chr4.2:34648630-34648649 | None:intergenic | 20.0% |
| !! | TTACAAAGGATTTAAAAGAT+AGG | - | chr4.2:34649358-34649377 | None:intergenic | 20.0% |
| !!! | AATTGCTTATCTTTTTTGAA+AGG | - | chr4.2:34649393-34649412 | None:intergenic | 20.0% |
| !!! | GGATTTTTTTTTTGTTACAA+AGG | - | chr4.2:34649372-34649391 | None:intergenic | 20.0% |
| ! | AAATTTCTGTGGTCTATATT+CGG | - | chr4.2:34649170-34649189 | None:intergenic | 25.0% |
| ! | ATGGGAGATTTACATTAAAA+AGG | + | chr4.2:34648583-34648602 | MS.gene90965:intron | 25.0% |
| ! | ATGTAAATCTCCCATATTTA+GGG | - | chr4.2:34648483-34648502 | None:intergenic | 25.0% |
| ! | GATAATTGGAATAAGAAGAA+AGG | + | chr4.2:34650350-34650369 | MS.gene90965:CDS | 25.0% |
| ! | GATTTACATCAAAAAGGATA+AGG | + | chr4.2:34648494-34648513 | MS.gene90965:intron | 25.0% |
| ! | TATTACATATTGAGGGATTA+GGG | - | chr4.2:34648687-34648706 | None:intergenic | 25.0% |
| ! | TTATTACATATTGAGGGATT+AGG | - | chr4.2:34648688-34648707 | None:intergenic | 25.0% |
| ! | TTGGAAAGTGATATTTGAAA+GGG | + | chr4.2:34649214-34649233 | MS.gene90965:intron | 25.0% |
| !! | AGTTATTCTTTGTTTGTTTG+AGG | + | chr4.2:34649273-34649292 | MS.gene90965:intron | 25.0% |
| !! | GTTATTCTTTGTTTGTTTGA+GGG | + | chr4.2:34649274-34649293 | MS.gene90965:intron | 25.0% |
| AATGTAAATCTCCCATATTG+AGG | - | chr4.2:34648579-34648598 | None:intergenic | 30.0% | |
| AATTTCTTTGATGAACAACC+AGG | - | chr4.2:34648861-34648880 | None:intergenic | 30.0% | |
| ACGTTCTAATTGTTCAATGT+AGG | + | chr4.2:34648534-34648553 | MS.gene90965:intron | 30.0% | |
| ATGGGAGATTTACATCAAAA+AGG | + | chr4.2:34648488-34648507 | MS.gene90965:intron | 30.0% | |
| ATGTAAATCTCCCATATTGA+GGG | - | chr4.2:34648578-34648597 | None:intergenic | 30.0% | |
| ATTTCTTTGATGAACAACCA+GGG | - | chr4.2:34648860-34648879 | None:intergenic | 30.0% | |
| CAATTGTGTGCTTTGTAATT+AGG | - | chr4.2:34648761-34648780 | None:intergenic | 30.0% | |
| GATCTAAATTGTTTACCACT+TGG | + | chr4.2:34649044-34649063 | MS.gene90965:intron | 30.0% | |
| GATGTAAATCTCCCATATTT+AGG | - | chr4.2:34648484-34648503 | None:intergenic | 30.0% | |
| GGTCATAACTTTAAACACAA+AGG | - | chr4.2:34648666-34648685 | None:intergenic | 30.0% | |
| GTTGGAAAGTGATATTTGAA+AGG | + | chr4.2:34649213-34649232 | MS.gene90965:intron | 30.0% | |
| TACATTGAACAATTAGAACG+TGG | - | chr4.2:34648535-34648554 | None:intergenic | 30.0% | |
| TATATGCAATTGCGTCTAAA+TGG | - | chr4.2:34648946-34648965 | None:intergenic | 30.0% | |
| TATTGCATCCAAAACGTTAT+TGG | - | chr4.2:34650795-34650814 | None:intergenic | 30.0% | |
| TGTAAATCTCCCATATTTAG+GGG | - | chr4.2:34648482-34648501 | None:intergenic | 30.0% | |
| TTACAAAGCACACAATTGAT+AGG | + | chr4.2:34648763-34648782 | MS.gene90965:intron | 30.0% | |
| TTGGATGGCGTTATATATAA+CGG | + | chr4.2:34649498-34649517 | MS.gene90965:intron | 30.0% | |
| ! | CCACAAAGTTTTCTTTTCAT+CGG | + | chr4.2:34648898-34648917 | MS.gene90965:intron | 30.0% |
| ! | GTTTGTGCTTTCTTCTTTTT+AGG | - | chr4.2:34649795-34649814 | None:intergenic | 30.0% |
| ! | TAAACCGGTTTCTTCTTATA+CGG | + | chr4.2:34649839-34649858 | MS.gene90965:CDS | 30.0% |
| !! | GTTTGTTACCAATAACGTTT+TGG | + | chr4.2:34650784-34650803 | MS.gene90965:CDS | 30.0% |
| !!! | CTTCTTTTTAGGTTTTGTTG+CGG | - | chr4.2:34649784-34649803 | None:intergenic | 30.0% |
| AAGAAAGGTGAATTCAGTGT+TGG | + | chr4.2:34650365-34650384 | MS.gene90965:CDS | 35.0% | |
| ACCAGATTTACCCCTAAATA+TGG | + | chr4.2:34648469-34648488 | MS.gene90965:intron | 35.0% | |
| ACTTTGCAATTGAACTTGCA+TGG | + | chr4.2:34648826-34648845 | MS.gene90965:intron | 35.0% | |
| CCAGATTTACCCCTAAATAT+GGG | + | chr4.2:34648470-34648489 | MS.gene90965:intron | 35.0% | |
| CCGATGAAAAGAAAACTTTG+TGG | - | chr4.2:34648901-34648920 | None:intergenic | 35.0% | |
| GAACAAAGAGAAAGACAACA+TGG | + | chr4.2:34649614-34649633 | MS.gene90965:CDS | 35.0% | |
| GCTGTTGCTACTAATACTAA+TGG | + | chr4.2:34650491-34650510 | MS.gene90965:CDS | 35.0% | |
| GTTGCTACTAATACTAATGG+TGG | + | chr4.2:34650494-34650513 | MS.gene90965:CDS | 35.0% | |
| TAAATCTGCACCGTTCATTT+GGG | + | chr4.2:34649472-34649491 | MS.gene90965:intron | 35.0% | |
| TGGATGGCGTTATATATAAC+GGG | + | chr4.2:34649499-34649518 | MS.gene90965:intron | 35.0% | |
| TGTAAATCTCCCATATTGAG+GGG | - | chr4.2:34648577-34648596 | None:intergenic | 35.0% | |
| TGTGTGCTTTGTAATTAGGT+AGG | - | chr4.2:34648757-34648776 | None:intergenic | 35.0% | |
| TTAAATCTGCACCGTTCATT+TGG | + | chr4.2:34649471-34649490 | MS.gene90965:intron | 35.0% | |
| TTTCTTTGATGAACAACCAG+GGG | - | chr4.2:34648859-34648878 | None:intergenic | 35.0% | |
| ! | AGAAACGAGAATGTTGGTAA+CGG | + | chr4.2:34650395-34650414 | MS.gene90965:CDS | 35.0% |
| ! | GGCTGATGAGATTGATAATT+GGG | + | chr4.2:34650103-34650122 | MS.gene90965:CDS | 35.0% |
| ! | TCCTGATTTTCATTACTCAC+CGG | - | chr4.2:34650470-34650489 | None:intergenic | 35.0% |
| ! | TTTGGTTTCAACAACGTTGT+TGG | - | chr4.2:34649727-34649746 | None:intergenic | 35.0% |
| !!! | CTTTCGTAGATTGCGTTTTT+TGG | - | chr4.2:34649543-34649562 | None:intergenic | 35.0% |
| AAATCTGCACCGTTCATTTG+GGG | + | chr4.2:34649473-34649492 | MS.gene90965:intron | 40.0% | |
| AAGAAGACTGTTGTTGGGAA+TGG | + | chr4.2:34650134-34650153 | MS.gene90965:CDS | 40.0% | |
| AAGTTCAGCTTCGTGTTCTT+CGG | - | chr4.2:34649688-34649707 | None:intergenic | 40.0% | |
| ACCAGATTTACCCCTCAATA+TGG | + | chr4.2:34648564-34648583 | MS.gene90965:intron | 40.0% | |
| AGAAGACTGTTGTTGGGAAT+GGG | + | chr4.2:34650135-34650154 | MS.gene90965:CDS | 40.0% | |
| AGTGAACTCAGCCAAACTTA+GGG | - | chr4.2:34649817-34649836 | None:intergenic | 40.0% | |
| AGTGAGAGAAACGAGAATGT+TGG | + | chr4.2:34650389-34650408 | MS.gene90965:CDS | 40.0% | |
| ATGAGAGTTCTGTTTCGAGA+TGG | + | chr4.2:34649994-34650013 | MS.gene90965:CDS | 40.0% | |
| CAAAGAGAAAGACAACATGG+CGG | + | chr4.2:34649617-34649636 | MS.gene90965:CDS | 40.0% | |
| CATCCAATACCCCAAATGAA+CGG | - | chr4.2:34649485-34649504 | None:intergenic | 40.0% | |
| CCAGATTTACCCCTCAATAT+GGG | + | chr4.2:34648565-34648584 | MS.gene90965:intron | 40.0% | |
| CCCATATTTAGGGGTAAATC+TGG | - | chr4.2:34648473-34648492 | None:intergenic | 40.0% | |
| GCTTGAGACCATGAAGATTA+AGG | + | chr4.2:34650631-34650650 | MS.gene90965:CDS | 40.0% | |
| GGGAATATAGCTAAGCCTAA+GGG | + | chr4.2:34650527-34650546 | MS.gene90965:CDS | 40.0% | |
| GGTTGAAGGATTTGGAAAGA+GGG | + | chr4.2:34650664-34650683 | MS.gene90965:CDS | 40.0% | |
| GTTGAAGGATTTGGAAAGAG+GGG | + | chr4.2:34650665-34650684 | MS.gene90965:CDS | 40.0% | |
| TAGAGAATCGAGTCGTGATT+CGG | + | chr4.2:34650070-34650089 | MS.gene90965:CDS | 40.0% | |
| TGAGAGTTCTGTTTCGAGAT+GGG | + | chr4.2:34649995-34650014 | MS.gene90965:CDS | 40.0% | |
| TGAGCCGTATAAGAAGAAAC+CGG | - | chr4.2:34649846-34649865 | None:intergenic | 40.0% | |
| TGCAGTCTCCTTAATCTTCA+TGG | - | chr4.2:34650642-34650661 | None:intergenic | 40.0% | |
| TGGGAATATAGCTAAGCCTA+AGG | + | chr4.2:34650526-34650545 | MS.gene90965:CDS | 40.0% | |
| TGGTTGAAGGATTTGGAAAG+AGG | + | chr4.2:34650663-34650682 | MS.gene90965:CDS | 40.0% | |
| TTCTTATACGGCTCAAGATC+CGG | + | chr4.2:34649851-34649870 | MS.gene90965:CDS | 40.0% | |
| TTCTTTGATGAACAACCAGG+GGG | - | chr4.2:34648858-34648877 | None:intergenic | 40.0% | |
| TTGATAGGGAGAGGAAAGTA+GGG | + | chr4.2:34650300-34650319 | MS.gene90965:CDS | 40.0% | |
| TTGCTGTGTTATAGTCCAAG+TGG | - | chr4.2:34649062-34649081 | None:intergenic | 40.0% | |
| TTTGATAGGGAGAGGAAAGT+AGG | + | chr4.2:34650299-34650318 | MS.gene90965:CDS | 40.0% | |
| ! | AGATTGATAATTGGGCTGCT+GGG | + | chr4.2:34650111-34650130 | MS.gene90965:CDS | 40.0% |
| ! | CTGTGGTCTATATTCGGTTT+TGG | - | chr4.2:34649164-34649183 | None:intergenic | 40.0% |
| ! | GAAAGCACAAACCCTAAGTT+TGG | + | chr4.2:34649803-34649822 | MS.gene90965:CDS | 40.0% |
| ! | GGGCTGATGAGATTGATAAT+TGG | + | chr4.2:34650102-34650121 | MS.gene90965:CDS | 40.0% |
| !! | AAAGTAGGGTTTGGTGTTAG+TGG | + | chr4.2:34650314-34650333 | MS.gene90965:CDS | 40.0% |
| !! | AAGATCGATTTGAGAGGAGT+TGG | + | chr4.2:34650714-34650733 | MS.gene90965:CDS | 40.0% |
| !! | ACTAATGGTGGTGTTGTTTC+TGG | + | chr4.2:34650506-34650525 | MS.gene90965:CDS | 40.0% |
| !! | CTAATGGTGGTGTTGTTTCT+GGG | + | chr4.2:34650507-34650526 | MS.gene90965:CDS | 40.0% |
| !! | GCGTTATATATAACGGGTCT+AGG | + | chr4.2:34649505-34649524 | MS.gene90965:intron | 40.0% |
| !!! | CTTTTTAGGTTTTGTTGCGG+CGG | - | chr4.2:34649781-34649800 | None:intergenic | 40.0% |
| !!! | GGTGGTGGTTTTAGATCTTA+CGG | + | chr4.2:34649939-34649958 | MS.gene90965:CDS | 40.0% |
| !!! | GGTTTTTTGATTCGCAGTCA+CGG | + | chr4.2:34650192-34650211 | MS.gene90965:CDS | 40.0% |
| !!! | GTTTTTTGATTCGCAGTCAC+GGG | + | chr4.2:34650193-34650212 | MS.gene90965:CDS | 40.0% |
| ACTGCAGTGGTTGAAGGATT+TGG | + | chr4.2:34650656-34650675 | MS.gene90965:CDS | 45.0% | |
| AGAGAATCGAGTCGTGATTC+GGG | + | chr4.2:34650071-34650090 | MS.gene90965:CDS | 45.0% | |
| AGGGAATTCAGCAAGTGGTT+TGG | - | chr4.2:34649745-34649764 | None:intergenic | 45.0% | |
| CAGTGAACTCAGCCAAACTT+AGG | - | chr4.2:34649818-34649837 | None:intergenic | 45.0% | |
| CCATCATCACCATCTGATGA+TGG | + | chr4.2:34650749-34650768 | MS.gene90965:CDS | 45.0% | |
| CCCATATTGAGGGGTAAATC+TGG | - | chr4.2:34648568-34648587 | None:intergenic | 45.0% | |
| CTGGGAAGAAGACTGTTGTT+GGG | + | chr4.2:34650129-34650148 | MS.gene90965:CDS | 45.0% | |
| GAAGATTAAGGAGACTGCAG+TGG | + | chr4.2:34650643-34650662 | MS.gene90965:CDS | 45.0% | |
| GAGAGTTCTGTTTCGAGATG+GGG | + | chr4.2:34649996-34650015 | MS.gene90965:CDS | 45.0% | |
| GCCGGTGAGTAATGAAAATC+AGG | + | chr4.2:34650466-34650485 | MS.gene90965:CDS | 45.0% | |
| GGTTTCAACAACGTTGTTGG+TGG | - | chr4.2:34649724-34649743 | None:intergenic | 45.0% | |
| TCAGAACGACCATCATCAGA+TGG | - | chr4.2:34650761-34650780 | None:intergenic | 45.0% | |
| TTTAGATCTTACGGTGACCG+TGG | + | chr4.2:34649948-34649967 | MS.gene90965:CDS | 45.0% | |
| ! | CCATCATCAGATGGTGATGA+TGG | - | chr4.2:34650752-34650771 | None:intergenic | 45.0% |
| ! | GAGATTGATAATTGGGCTGC+TGG | + | chr4.2:34650110-34650129 | MS.gene90965:CDS | 45.0% |
| ! | GGATAGTTGGGTTTCGAGTA+AGG | + | chr4.2:34650226-34650245 | MS.gene90965:CDS | 45.0% |
| ! | GGATTTGGAAAGAGGGGTTT+TGG | + | chr4.2:34650671-34650690 | MS.gene90965:CDS | 45.0% |
| ! | TGGGAATGGGTTTGAGAGAA+GGG | + | chr4.2:34650148-34650167 | MS.gene90965:CDS | 45.0% |
| ! | TTGGGAATGGGTTTGAGAGA+AGG | + | chr4.2:34650147-34650166 | MS.gene90965:CDS | 45.0% |
| !! | ATCGATTTGAGAGGAGTTGG+AGG | + | chr4.2:34650717-34650736 | MS.gene90965:CDS | 45.0% |
| !! | CGTTCATTTGGGGTATTGGA+TGG | + | chr4.2:34649483-34649502 | MS.gene90965:intron | 45.0% |
| !! | CTGATGATGGTCGTTCTGAA+AGG | + | chr4.2:34650762-34650781 | MS.gene90965:CDS | 45.0% |
| !! | GTTCTAGGGTTTCTGAGGAT+GGG | + | chr4.2:34650030-34650049 | MS.gene90965:CDS | 45.0% |
| !! | TGTTGGTGGTGGGTTTGATA+GGG | + | chr4.2:34650286-34650305 | MS.gene90965:CDS | 45.0% |
| !! | TTAATTAATTAATTAAATGA+CGG | - | chr4.2:34649427-34649446 | None:intergenic | 5.0% |
| AACCACCACCAATCCTAGTC+CGG | - | chr4.2:34649929-34649948 | None:intergenic | 50.0% | |
| AACCGCTGAGGAACTTGAAC+GGG | + | chr4.2:34649902-34649921 | MS.gene90965:CDS | 50.0% | |
| AAGGAGACTGCAGTGGTTGA+AGG | + | chr4.2:34650650-34650669 | MS.gene90965:CDS | 50.0% | |
| AGGGAAGGGAATTCAGCAAG+TGG | - | chr4.2:34649750-34649769 | None:intergenic | 50.0% | |
| AGGGAGAGGAAAGTAGGGTT+TGG | + | chr4.2:34650305-34650324 | MS.gene90965:CDS | 50.0% | |
| CTGAGGATGGGAGAAGGAAT+GGG | + | chr4.2:34650042-34650061 | MS.gene90965:CDS | 50.0% | |
| GAACCGCTGAGGAACTTGAA+CGG | + | chr4.2:34649901-34649920 | MS.gene90965:CDS | 50.0% | |
| GAGAATCGAGTCGTGATTCG+GGG | + | chr4.2:34650072-34650091 | MS.gene90965:CDS | 50.0% | |
| GCTGGGAAGAAGACTGTTGT+TGG | + | chr4.2:34650128-34650147 | MS.gene90965:CDS | 50.0% | |
| GGCTGAGTTCACTGCTAAAC+CGG | + | chr4.2:34649824-34649843 | MS.gene90965:CDS | 50.0% | |
| GTATCTGCTTGGTCCAAACC+AGG | + | chr4.2:34649645-34649664 | MS.gene90965:CDS | 50.0% | |
| GTGGTGCGGATTCGGATAAT+TGG | + | chr4.2:34650336-34650355 | MS.gene90965:CDS | 50.0% | |
| TCAATCTCATCAGCCCTCGA+CGG | - | chr4.2:34650098-34650117 | None:intergenic | 50.0% | |
| TCTGAGGATGGGAGAAGGAA+TGG | + | chr4.2:34650041-34650060 | MS.gene90965:CDS | 50.0% | |
| TCTGTTTCGAGATGGGGTTC+TGG | + | chr4.2:34650002-34650021 | MS.gene90965:CDS | 50.0% | |
| TGGCTGAGAAAGGTCAGGAT+TGG | + | chr4.2:34650591-34650610 | MS.gene90965:CDS | 50.0% | |
| TTACGGTGACCGTGGTGATA+GGG | + | chr4.2:34649956-34649975 | MS.gene90965:CDS | 50.0% | |
| TTGGTCCAAACCAGGTGCAT+GGG | + | chr4.2:34649653-34649672 | MS.gene90965:CDS | 50.0% | |
| TTGTCCTGTCCCTATCACCA+CGG | - | chr4.2:34649968-34649987 | None:intergenic | 50.0% | |
| TTTGAGAGAAGGGAGAGAGG+TGG | + | chr4.2:34650158-34650177 | MS.gene90965:CDS | 50.0% | |
| ! | CAAATCCGTTTGGTGAGGCA+AGG | + | chr4.2:34650552-34650571 | MS.gene90965:CDS | 50.0% |
| ! | CCAAACGGATTTGCACCCTT+AGG | - | chr4.2:34650545-34650564 | None:intergenic | 50.0% |
| ! | CCTAAGGGTGCAAATCCGTT+TGG | + | chr4.2:34650542-34650561 | MS.gene90965:CDS | 50.0% |
| ! | GCACCGTTCATTTGGGGTAT+TGG | + | chr4.2:34649479-34649498 | MS.gene90965:intron | 50.0% |
| ! | GGCTGATGGATCGGATAGTT+GGG | + | chr4.2:34650214-34650233 | MS.gene90965:CDS | 50.0% |
| ! | GGTTTCGAGTAAGGTGCCAT+CGG | + | chr4.2:34650235-34650254 | MS.gene90965:CDS | 50.0% |
| ! | TGTTAGTGGTGGTGCGGATT+CGG | + | chr4.2:34650328-34650347 | MS.gene90965:CDS | 50.0% |
| ! | TTCGAGATGGGGTTCTGGTT+CGG | + | chr4.2:34650007-34650026 | MS.gene90965:CDS | 50.0% |
| !! | AATGTTGGTAACGGCAGTGG+TGG | + | chr4.2:34650404-34650423 | MS.gene90965:CDS | 50.0% |
| !! | GAGAATGTTGGTAACGGCAG+TGG | + | chr4.2:34650401-34650420 | MS.gene90965:CDS | 50.0% |
| !! | GCGGTGAAGATCGATTTGAG+AGG | + | chr4.2:34650708-34650727 | MS.gene90965:CDS | 50.0% |
| !! | GGTTCTAGGGTTTCTGAGGA+TGG | + | chr4.2:34650029-34650048 | MS.gene90965:CDS | 50.0% |
| !! | GTAGGGTTTGGTGTTAGTGG+TGG | + | chr4.2:34650317-34650336 | MS.gene90965:CDS | 50.0% |
| !! | GTGTTGGTGGTGGGTTTGAT+AGG | + | chr4.2:34650285-34650304 | MS.gene90965:CDS | 50.0% |
| !! | GTTTGGTGTTAGTGGTGGTG+CGG | + | chr4.2:34650322-34650341 | MS.gene90965:CDS | 50.0% |
| !! | TTCGGGTTCTAGGGTTTCTG+AGG | + | chr4.2:34650025-34650044 | MS.gene90965:CDS | 50.0% |
| !! | TTTGGTTCTGGCAATGGACG+CGG | + | chr4.2:34650689-34650708 | MS.gene90965:CDS | 50.0% |
| !! | TTTGGTTCTGGTGGTGGTGT+TGG | + | chr4.2:34650269-34650288 | MS.gene90965:CDS | 50.0% |
| !!! | AGGGGTTTTGGTTCTGGCAA+TGG | + | chr4.2:34650683-34650702 | MS.gene90965:CDS | 50.0% |
| !!! | GAGCAGGTTTTGGCTGAGAA+AGG | + | chr4.2:34650581-34650600 | MS.gene90965:CDS | 50.0% |
| !!! | GGAAAGAGGGGTTTTGGTTC+TGG | + | chr4.2:34650677-34650696 | MS.gene90965:CDS | 50.0% |
| !!! | GGTTTTGGCTGAGAAAGGTC+AGG | + | chr4.2:34650586-34650605 | MS.gene90965:CDS | 50.0% |
| AACTTGAACGGGACCGGACT+AGG | + | chr4.2:34649913-34649932 | MS.gene90965:CDS | 55.0% | |
| AAGTGCCCATGCACCTGGTT+TGG | - | chr4.2:34649661-34649680 | None:intergenic | 55.0% | |
| AGGATGGGAGAAGGAATGGG+AGG | + | chr4.2:34650045-34650064 | MS.gene90965:CDS | 55.0% | |
| CGTGGCTGCAAAACAAGCCT+AGG | - | chr4.2:34650440-34650459 | None:intergenic | 55.0% | |
| CTGAGGAACTTGAACGGGAC+CGG | + | chr4.2:34649907-34649926 | MS.gene90965:CDS | 55.0% | |
| CTTACGGTGACCGTGGTGAT+AGG | + | chr4.2:34649955-34649974 | MS.gene90965:CDS | 55.0% | |
| CTTGGTCCAAACCAGGTGCA+TGG | + | chr4.2:34649652-34649671 | MS.gene90965:CDS | 55.0% | |
| GAATCAAGTGCCCATGCACC+TGG | - | chr4.2:34649666-34649685 | None:intergenic | 55.0% | |
| GATCCGGTTGATCTTCCCAC+CGG | + | chr4.2:34649867-34649886 | MS.gene90965:CDS | 55.0% | |
| GGATGGGAGAAGGAATGGGA+GGG | + | chr4.2:34650046-34650065 | MS.gene90965:CDS | 55.0% | |
| GGGTTTGAGAGAAGGGAGAG+AGG | + | chr4.2:34650155-34650174 | MS.gene90965:CDS | 55.0% | |
| GTGGTGATAGGGACAGGACA+AGG | + | chr4.2:34649967-34649986 | MS.gene90965:CDS | 55.0% | |
| TCAGCCAAAACCTGCTCCCT+TGG | - | chr4.2:34650578-34650597 | None:intergenic | 55.0% | |
| TGGCGGCTACTGTATCTGCT+TGG | + | chr4.2:34649634-34649653 | MS.gene90965:CDS | 55.0% | |
| ! | AAGGCCAAGGGAGCAGGTTT+TGG | + | chr4.2:34650571-34650590 | MS.gene90965:CDS | 55.0% |
| ! | GAGGGACGGAGATTTGGTTC+TGG | + | chr4.2:34650257-34650276 | MS.gene90965:CDS | 55.0% |
| ! | GGGCTGATGGATCGGATAGT+TGG | + | chr4.2:34650213-34650232 | MS.gene90965:CDS | 55.0% |
| ! | GGGTGCAAATCCGTTTGGTG+AGG | + | chr4.2:34650547-34650566 | MS.gene90965:CDS | 55.0% |
| ! | GGGTTTCTGAGGATGGGAGA+AGG | + | chr4.2:34650036-34650055 | MS.gene90965:CDS | 55.0% |
| ! | GTCCCGTTCAAGTTCCTCAG+CGG | - | chr4.2:34649907-34649926 | None:intergenic | 55.0% |
| ! | GTTTGGTGAGGCAAGGCCAA+GGG | + | chr4.2:34650559-34650578 | MS.gene90965:CDS | 55.0% |
| ! | TCGAGTAAGGTGCCATCGGA+GGG | + | chr4.2:34650239-34650258 | MS.gene90965:CDS | 55.0% |
| ! | TTCGAGTAAGGTGCCATCGG+AGG | + | chr4.2:34650238-34650257 | MS.gene90965:CDS | 55.0% |
| !! | CGGAGATTTGGTTCTGGTGG+TGG | + | chr4.2:34650263-34650282 | MS.gene90965:CDS | 55.0% |
| !! | CTTGGCCTTGCCTCACCAAA+CGG | - | chr4.2:34650560-34650579 | None:intergenic | 55.0% |
| !! | GGACGGAGATTTGGTTCTGG+TGG | + | chr4.2:34650260-34650279 | MS.gene90965:CDS | 55.0% |
| !! | GGGTTCTGGTTCGGGTTCTA+GGG | + | chr4.2:34650016-34650035 | MS.gene90965:CDS | 55.0% |
| !! | GTGGTGGGTTTGATAGGGAG+AGG | + | chr4.2:34650291-34650310 | MS.gene90965:CDS | 55.0% |
| !! | TCGAGATGGGGTTCTGGTTC+GGG | + | chr4.2:34650008-34650027 | MS.gene90965:CDS | 55.0% |
| AGAAGGGAGAGAGGTGGAGG+TGG | + | chr4.2:34650164-34650183 | MS.gene90965:CDS | 60.0% | |
| AGAGAGGTGGAGGTGGAGGT+GGG | + | chr4.2:34650171-34650190 | MS.gene90965:CDS | 60.0% | |
| CCAAATCTCCGTCCCTCCGA+TGG | - | chr4.2:34650254-34650273 | None:intergenic | 60.0% | |
| CCATCGGAGGGACGGAGATT+TGG | + | chr4.2:34650251-34650270 | MS.gene90965:CDS | 60.0% | |
| CTTGCATGGAAGACACCCCC+TGG | + | chr4.2:34648840-34648859 | MS.gene90965:intron | 60.0% | |
| GAGAGAAGGGAGAGAGGTGG+AGG | + | chr4.2:34650161-34650180 | MS.gene90965:CDS | 60.0% | |
| GGACCGGTGGGAAGATCAAC+CGG | - | chr4.2:34649873-34649892 | None:intergenic | 60.0% | |
| GTGACCGTGGTGATAGGGAC+AGG | + | chr4.2:34649961-34649980 | MS.gene90965:CDS | 60.0% | |
| TTACTCACCGGCGCTGTTCG+TGG | - | chr4.2:34650458-34650477 | None:intergenic | 60.0% | |
| TTTGCAGCCACGAACAGCGC+CGG | + | chr4.2:34650448-34650467 | MS.gene90965:CDS | 60.0% | |
| ! | CGTTTGGTGAGGCAAGGCCA+AGG | + | chr4.2:34650558-34650577 | MS.gene90965:CDS | 60.0% |
| ! | GAACGGGACCGGACTAGGAT+TGG | + | chr4.2:34649918-34649937 | MS.gene90965:CDS | 60.0% |
| ! | GACCGGACTAGGATTGGTGG+TGG | + | chr4.2:34649924-34649943 | MS.gene90965:CDS | 60.0% |
| ! | GATTCGCAGTCACGGGCTGA+TGG | + | chr4.2:34650200-34650219 | MS.gene90965:CDS | 60.0% |
| ! | GCAGTCACGGGCTGATGGAT+CGG | + | chr4.2:34650205-34650224 | MS.gene90965:CDS | 60.0% |
| ! | GTAAGGTGCCATCGGAGGGA+CGG | + | chr4.2:34650243-34650262 | MS.gene90965:CDS | 60.0% |
| !! | CTGGTGGTGGTGTTGGTGGT+GGG | + | chr4.2:34650276-34650295 | MS.gene90965:CDS | 60.0% |
| !! | GGGGTTCTGGTTCGGGTTCT+AGG | + | chr4.2:34650015-34650034 | MS.gene90965:CDS | 60.0% |
| !! | GGTTCTGGTGGTGGTGTTGG+TGG | + | chr4.2:34650272-34650291 | MS.gene90965:CDS | 60.0% |
| !! | GTTGGTAACGGCAGTGGTGG+TGG | + | chr4.2:34650407-34650426 | MS.gene90965:CDS | 60.0% |
| !! | TCTGGTGGTGGTGTTGGTGG+TGG | + | chr4.2:34650275-34650294 | MS.gene90965:CDS | 60.0% |
| AGCGGTTCGCTGACGTGGAC+CGG | - | chr4.2:34649889-34649908 | None:intergenic | 65.0% | |
| AGGGAGAGAGGTGGAGGTGG+AGG | + | chr4.2:34650167-34650186 | MS.gene90965:CDS | 65.0% | |
| GAGAGAGGTGGAGGTGGAGG+TGG | + | chr4.2:34650170-34650189 | MS.gene90965:CDS | 65.0% | |
| GTTCGCTGACGTGGACCGGT+GGG | - | chr4.2:34649885-34649904 | None:intergenic | 65.0% | |
| TCCACGTCAGCGAACCGCTG+AGG | + | chr4.2:34649890-34649909 | MS.gene90965:CDS | 65.0% | |
| TCCTCAGCGGTTCGCTGACG+TGG | - | chr4.2:34649894-34649913 | None:intergenic | 65.0% | |
| TGAGGCAAGGCCAAGGGAGC+AGG | + | chr4.2:34650565-34650584 | MS.gene90965:CDS | 65.0% | |
| TGTTGCGGCGGCAACAGCGA+GGG | - | chr4.2:34649769-34649788 | None:intergenic | 65.0% | |
| TTGTTGCGGCGGCAACAGCG+AGG | - | chr4.2:34649770-34649789 | None:intergenic | 65.0% | |
| ! | CGGGACCGGACTAGGATTGG+TGG | + | chr4.2:34649921-34649940 | MS.gene90965:CDS | 65.0% |
| ! | TCGTGATTCGGGGCCGTCGA+GGG | + | chr4.2:34650082-34650101 | MS.gene90965:CDS | 65.0% |
| !! | ACGGCAGTGGTGGTGGTGGA+AGG | + | chr4.2:34650414-34650433 | MS.gene90965:CDS | 65.0% |
| !! | GGTAACGGCAGTGGTGGTGG+TGG | + | chr4.2:34650410-34650429 | MS.gene90965:CDS | 65.0% |
| !! | GTGGTGGTGGTGGAAGGCCT+AGG | + | chr4.2:34650420-34650439 | MS.gene90965:CDS | 65.0% |
| CGGCGGCAACAGCGAGGGAA+GGG | - | chr4.2:34649764-34649783 | None:intergenic | 70.0% | |
| GGTTCGCTGACGTGGACCGG+TGG | - | chr4.2:34649886-34649905 | None:intergenic | 70.0% | |
| ! | GTCGTGATTCGGGGCCGTCG+AGG | + | chr4.2:34650081-34650100 | MS.gene90965:CDS | 70.0% |
| GCGGCGGCAACAGCGAGGGA+AGG | - | chr4.2:34649765-34649784 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 34648398 | 34650817 | 34648398 | ID=MS.gene90965 |
| chr4.2 | mRNA | 34648398 | 34650817 | 34648398 | ID=MS.gene90965.t1;Parent=MS.gene90965 |
| chr4.2 | exon | 34648398 | 34648405 | 34648398 | ID=MS.gene90965.t1.exon1;Parent=MS.gene90965.t1 |
| chr4.2 | CDS | 34648398 | 34648405 | 34648398 | ID=cds.MS.gene90965.t1;Parent=MS.gene90965.t1 |
| chr4.2 | exon | 34649527 | 34650817 | 34649527 | ID=MS.gene90965.t1.exon2;Parent=MS.gene90965.t1 |
| chr4.2 | CDS | 34649527 | 34650817 | 34649527 | ID=cds.MS.gene90965.t1;Parent=MS.gene90965.t1 |
| Gene Sequence |
| Protein sequence |
