Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93942.t1 | RHN59586.1 | 96.8 | 190 | 6 | 0 | 2 | 191 | 72 | 261 | 6.10E-100 | 373.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93942.t1 | A0A396I1U4 | 96.8 | 190 | 6 | 0 | 2 | 191 | 72 | 261 | 4.4e-100 | 373.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene93942.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene93942 | 0.839798 | 1.28E-57 | -1.69E-46 |
| MS.gene049369 | MS.gene93942 | 0.817005 | 4.13E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene93942 | 0.812364 | 4.40E-51 | -1.69E-46 |
| MS.gene049662 | MS.gene93942 | 0.802945 | 4.41E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene93942 | 0.822075 | 2.88E-53 | -1.69E-46 |
| MS.gene050397 | MS.gene93942 | 0.823482 | 1.35E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene93942 | 0.817174 | 3.78E-52 | -1.69E-46 |
| MS.gene050464 | MS.gene93942 | 0.803054 | 4.19E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene93942 | 0.825916 | 3.61E-54 | -1.69E-46 |
| MS.gene050593 | MS.gene93942 | 0.845981 | 2.89E-59 | -1.69E-46 |
| MS.gene050670 | MS.gene93942 | 0.862205 | 5.97E-64 | -1.69E-46 |
| MS.gene050772 | MS.gene93942 | 0.808813 | 2.58E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene93942 | 0.883692 | 3.62E-71 | -1.69E-46 |
| MS.gene051360 | MS.gene93942 | 0.80591 | 1.06E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene93942 | 0.832771 | 7.82E-56 | -1.69E-46 |
| MS.gene051525 | MS.gene93942 | 0.802612 | 5.17E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene93942 | 0.840311 | 9.39E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene93942 | 0.807429 | 5.08E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene93942 | 0.848683 | 5.24E-60 | -1.69E-46 |
| MS.gene052340 | MS.gene93942 | 0.864487 | 1.17E-64 | -1.69E-46 |
| MS.gene052421 | MS.gene93942 | 0.818495 | 1.90E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene93942 | 0.800299 | 1.54E-48 | -1.69E-46 |
| MS.gene053103 | MS.gene93942 | 0.829962 | 3.84E-55 | -1.69E-46 |
| MS.gene053104 | MS.gene93942 | 0.832948 | 7.06E-56 | -1.69E-46 |
| MS.gene053209 | MS.gene93942 | 0.863582 | 2.25E-64 | -1.69E-46 |
| MS.gene053449 | MS.gene93942 | 0.82122 | 4.53E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene93942 | 0.832067 | 1.17E-55 | -1.69E-46 |
| MS.gene053912 | MS.gene93942 | 0.806495 | 8.00E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene93942 | 0.824429 | 8.11E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene93942 | 0.868347 | 6.99E-66 | -1.69E-46 |
| MS.gene055277 | MS.gene93942 | 0.835384 | 1.73E-56 | -1.69E-46 |
| MS.gene05553 | MS.gene93942 | 0.817329 | 3.49E-52 | -1.69E-46 |
| MS.gene055859 | MS.gene93942 | 0.806549 | 7.79E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene93942 | 0.838578 | 2.65E-57 | -1.69E-46 |
| MS.gene056191 | MS.gene93942 | 0.802067 | 6.69E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene93942 | 0.862822 | 3.86E-64 | -1.69E-46 |
| MS.gene056410 | MS.gene93942 | 0.824718 | 6.93E-54 | -1.69E-46 |
| MS.gene056422 | MS.gene93942 | 0.816582 | 5.14E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene93942 | 0.863214 | 2.92E-64 | -1.69E-46 |
| MS.gene056609 | MS.gene93942 | 0.809515 | 1.82E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene93942 | 0.800639 | 1.31E-48 | -1.69E-46 |
| MS.gene05664 | MS.gene93942 | 0.815531 | 8.82E-52 | -1.69E-46 |
| MS.gene056659 | MS.gene93942 | 0.812119 | 4.98E-51 | -1.69E-46 |
| MS.gene056796 | MS.gene93942 | 0.812292 | 4.56E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene93942 | 0.834782 | 2.46E-56 | -1.69E-46 |
| MS.gene057124 | MS.gene93942 | 0.826454 | 2.69E-54 | -1.69E-46 |
| MS.gene057331 | MS.gene93942 | 0.847362 | 1.21E-59 | -1.69E-46 |
| MS.gene05735 | MS.gene93942 | 0.818862 | 1.57E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene93942 | 0.811477 | 6.87E-51 | -1.69E-46 |
| MS.gene057448 | MS.gene93942 | 0.81271 | 3.70E-51 | -1.69E-46 |
| MS.gene057449 | MS.gene93942 | 0.801693 | 7.98E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene93942 | 0.828133 | 1.06E-54 | -1.69E-46 |
| MS.gene057927 | MS.gene93942 | 0.810062 | 1.39E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene93942 | 0.823852 | 1.11E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene93942 | 0.817331 | 3.49E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene93942 | 0.806937 | 6.45E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene93942 | 0.8475 | 1.11E-59 | -1.69E-46 |
| MS.gene058928 | MS.gene93942 | 0.816443 | 5.52E-52 | -1.69E-46 |
| MS.gene058948 | MS.gene93942 | 0.814312 | 1.64E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene93942 | 0.818084 | 2.36E-52 | -1.69E-46 |
| MS.gene059294 | MS.gene93942 | 0.800313 | 1.53E-48 | -1.69E-46 |
| MS.gene059366 | MS.gene93942 | 0.810326 | 1.22E-50 | -1.69E-46 |
| MS.gene05959 | MS.gene93942 | 0.819291 | 1.25E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene93942 | 0.852764 | 3.73E-61 | -1.69E-46 |
| MS.gene059688 | MS.gene93942 | 0.864425 | 1.23E-64 | -1.69E-46 |
| MS.gene059692 | MS.gene93942 | 0.86172 | 8.41E-64 | -1.69E-46 |
| MS.gene059695 | MS.gene93942 | 0.860483 | 2.00E-63 | -1.69E-46 |
| MS.gene059711 | MS.gene93942 | 0.842823 | 2.04E-58 | -1.69E-46 |
| MS.gene059807 | MS.gene93942 | 0.833854 | 4.20E-56 | -1.69E-46 |
| MS.gene059894 | MS.gene93942 | 0.814048 | 1.88E-51 | -1.69E-46 |
| MS.gene059974 | MS.gene93942 | 0.807189 | 5.71E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene93942 | 0.811899 | 5.56E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene93942 | 0.849221 | 3.72E-60 | -1.69E-46 |
| MS.gene060804 | MS.gene93942 | 0.837082 | 6.41E-57 | -1.69E-46 |
| MS.gene060835 | MS.gene93942 | 0.8213 | 4.35E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene93942 | 0.83968 | 1.37E-57 | -1.69E-46 |
| MS.gene061041 | MS.gene93942 | 0.811006 | 8.69E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene93942 | 0.828589 | 8.27E-55 | -1.69E-46 |
| MS.gene061051 | MS.gene93942 | -0.853555 | 2.21E-61 | -1.69E-46 |
| MS.gene061154 | MS.gene93942 | 0.878742 | 2.20E-69 | -1.69E-46 |
| MS.gene061159 | MS.gene93942 | 0.808064 | 3.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93942.t1 | AT1G72030 | 52.747 | 182 | 80 | 3 | 14 | 190 | 60 | 240 | 3.66e-53 | 171 |
Find 34 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGACATTATTTCCAATTTA+TGG | 0.063814 | 4.3:-66374798 | MS.gene93942:CDS |
| CAAGAGTACCTTTACATTTC+AGG | 0.191164 | 4.3:-66375134 | MS.gene93942:CDS |
| TAGCTGTCTCCAATGCTTTC+AGG | 0.230533 | 4.3:-66375109 | MS.gene93942:intron |
| AAACTCATTACCCCATAAAT+TGG | 0.252387 | 4.3:+66374786 | None:intergenic |
| TAGAGCTTATGAGGAAGATT+TGG | 0.261696 | 4.3:-66374755 | MS.gene93942:CDS |
| TATATATAGGTATGCTTGTT+TGG | 0.294474 | 4.3:-66375258 | MS.gene93942:intron |
| TGACATTATTTCCAATTTAT+GGG | 0.303190 | 4.3:-66374797 | MS.gene93942:CDS |
| AAATAGGCTGAAGTGCTTTC+AGG | 0.334616 | 4.3:-66375491 | MS.gene93942:intron |
| AGAGCTTATGAGGAAGATTT+GGG | 0.386323 | 4.3:-66374754 | MS.gene93942:CDS |
| AATCTTCCTCATAAGCTCTA+AGG | 0.389371 | 4.3:+66374758 | None:intergenic |
| TAACAACAAATGTACCTATC+AGG | 0.398497 | 4.3:+66375440 | None:intergenic |
| TGAAAATATGAAGCAAAAGT+TGG | 0.405502 | 4.3:-66376162 | MS.gene93942:CDS |
| TCTTGTCCTTAGAGCTTATG+AGG | 0.416016 | 4.3:-66374764 | MS.gene93942:CDS |
| GTGAATATGGATGGAGGATA+AGG | 0.442867 | 4.3:-66376127 | MS.gene93942:CDS |
| ATAACACCTACAAGTTCCTT+TGG | 0.452679 | 4.3:+66375212 | None:intergenic |
| TTAAATACTCACCTCCTGAT+AGG | 0.463612 | 4.3:-66375454 | MS.gene93942:intron |
| GATTCACCAAAGGAACTTGT+AGG | 0.478737 | 4.3:-66375218 | MS.gene93942:CDS |
| AAGTCATTGAAAAGAGCTAC+AGG | 0.503117 | 4.3:+66376038 | None:intergenic |
| CGAACATTGTACACAAATGC+TGG | 0.511040 | 4.3:-66374727 | MS.gene93942:CDS |
| AGGTACTCTTGTGCATCAGC+AGG | 0.514017 | 4.3:+66375146 | None:intergenic |
| ACAATCAAAGAGAGAGCTCA+AGG | 0.518793 | 4.3:-66374289 | MS.gene93942:CDS |
| GTGATGTTGGAGATTGAGAA+AGG | 0.519667 | 4.3:-66376188 | MS.gene93942:CDS |
| CAGCTATTCCTGAAATGTAA+AGG | 0.520945 | 4.3:+66375126 | None:intergenic |
| GAAGATGTTCAAGCACATCT+TGG | 0.525750 | 4.3:+66375168 | None:intergenic |
| ATATAGGTATGCTTGTTTGG+TGG | 0.525798 | 4.3:-66375255 | MS.gene93942:intron |
| CCAACCCAATTACTTGTCCA+TGG | 0.539516 | 4.3:+66374679 | None:intergenic |
| GACATTATTTCCAATTTATG+GGG | 0.560914 | 4.3:-66374796 | MS.gene93942:CDS |
| GTGGATCTTTAGACACAAGT+TGG | 0.596499 | 4.3:+66374701 | None:intergenic |
| TGGTGTGTGAATATGGATGG+AGG | 0.600815 | 4.3:-66376133 | MS.gene93942:CDS |
| CAATCAAAGAGAGAGCTCAA+GGG | 0.619765 | 4.3:-66374288 | MS.gene93942:CDS |
| ACCCAATTACTTGTCCATGG+TGG | 0.661718 | 4.3:+66374682 | None:intergenic |
| CAACAAATGTACCTATCAGG+AGG | 0.675327 | 4.3:+66375443 | None:intergenic |
| GAATGATCAAGATTCACCAA+AGG | 0.679618 | 4.3:-66375228 | MS.gene93942:CDS |
| TTGTGTCTAAAGATCCACCA+TGG | 0.708310 | 4.3:-66374696 | MS.gene93942:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAATAATAATTATTTT+AGG | + | chr4.3:66375090-66375109 | None:intergenic | 0.0% |
| !! | AATTAATATTCTACTTAATT+AGG | + | chr4.3:66375844-66375863 | None:intergenic | 10.0% |
| !! | TATATTATGCTATTATATAT+AGG | - | chr4.3:66375183-66375202 | MS.gene93942:CDS | 10.0% |
| !!! | ATATTCAAGTATTTTTAAAT+AGG | - | chr4.3:66375403-66375422 | MS.gene93942:intron | 10.0% |
| !!! | GTCAAAATTTATTATTTTAA+AGG | + | chr4.3:66374877-66374896 | None:intergenic | 10.0% |
| !! | ATCATTTATCAATATGAAAT+TGG | - | chr4.3:66375061-66375080 | MS.gene93942:intron | 15.0% |
| !! | AAACATTAAACAACAACTAA+AGG | + | chr4.3:66374927-66374946 | None:intergenic | 20.0% |
| !! | TAAAGACAGAATATTAGAAA+TGG | - | chr4.3:66375882-66375901 | MS.gene93942:intron | 20.0% |
| !! | TGACATTATTTCCAATTTAT+GGG | - | chr4.3:66375657-66375676 | MS.gene93942:intron | 20.0% |
| !! | TGTATTATATATGTGAAAGT+CGG | + | chr4.3:66374727-66374746 | None:intergenic | 20.0% |
| !!! | CTTGTTTTTTCAATTCTTTA+AGG | - | chr4.3:66374436-66374455 | MS.gene93942:intron | 20.0% |
| ! | AACTAAAGGCAAATAAAATG+TGG | + | chr4.3:66374913-66374932 | None:intergenic | 25.0% |
| ! | ATGTTAATGAGACTAATTGA+TGG | - | chr4.3:66375593-66375612 | MS.gene93942:intron | 25.0% |
| ! | CAATTTATTATCTCATGCTA+AGG | + | chr4.3:66375135-66375154 | None:intergenic | 25.0% |
| ! | GACATTATTTCCAATTTATG+GGG | - | chr4.3:66375658-66375677 | MS.gene93942:intron | 25.0% |
| ! | GTGACATTATTTCCAATTTA+TGG | - | chr4.3:66375656-66375675 | MS.gene93942:intron | 25.0% |
| ! | TATATATAGGTATGCTTGTT+TGG | - | chr4.3:66375196-66375215 | MS.gene93942:CDS | 25.0% |
| ! | TATTCATTCTTGACACAAAT+AGG | - | chr4.3:66374947-66374966 | MS.gene93942:intron | 25.0% |
| ! | TGAAAATATGAAGCAAAAGT+TGG | - | chr4.3:66374292-66374311 | MS.gene93942:CDS | 25.0% |
| ! | TTCTCTACTTATTGTCTTAA+AGG | + | chr4.3:66374689-66374708 | None:intergenic | 25.0% |
| ! | TTGAACATATCTCAGTTAAT+AGG | + | chr4.3:66374754-66374773 | None:intergenic | 25.0% |
| ! | TTTGATTGATCTACTGTATA+AGG | - | chr4.3:66376103-66376122 | MS.gene93942:CDS | 25.0% |
| !! | AATAGTAACAAGATTTTGAG+TGG | - | chr4.3:66374549-66374568 | MS.gene93942:intron | 25.0% |
| !!! | AGTTTTCTTTTTTTGTGTTC+CGG | + | chr4.3:66375459-66375478 | None:intergenic | 25.0% |
| AAACTCATTACCCCATAAAT+TGG | + | chr4.3:66375671-66375690 | None:intergenic | 30.0% | |
| AAAGGCAAATAAAATGTGGT+AGG | + | chr4.3:66374909-66374928 | None:intergenic | 30.0% | |
| AAGACAATAAGTAGAGAATC+TGG | - | chr4.3:66374691-66374710 | MS.gene93942:intron | 30.0% | |
| ATTCTAACCACTACACAATT+TGG | + | chr4.3:66374662-66374681 | None:intergenic | 30.0% | |
| ATTTCACCATAAAGAGAGTT+TGG | + | chr4.3:66374600-66374619 | None:intergenic | 30.0% | |
| GAAATTGCTTCTCAAATTGT+AGG | - | chr4.3:66374615-66374634 | MS.gene93942:intron | 30.0% | |
| GAATGCAGATGAGATAAAAA+TGG | - | chr4.3:66374361-66374380 | MS.gene93942:intron | 30.0% | |
| TAACAACAAATGTACCTATC+AGG | + | chr4.3:66375017-66375036 | None:intergenic | 30.0% | |
| TGATGACACTGAAATAGTAT+TGG | + | chr4.3:66375988-66376007 | None:intergenic | 30.0% | |
| TTCTAACCACTACACAATTT+GGG | + | chr4.3:66374661-66374680 | None:intergenic | 30.0% | |
| TTTGATCCAAACTCTCTTTA+TGG | - | chr4.3:66374591-66374610 | MS.gene93942:intron | 30.0% | |
| !! | GTTTTCTTTTTTTGTGTTCC+GGG | + | chr4.3:66375458-66375477 | None:intergenic | 30.0% |
| !! | TTTTAATCACCTGAAAGCAT+TGG | + | chr4.3:66375357-66375376 | None:intergenic | 30.0% |
| !!! | GAAGCAAAAGTTGGATTTTT+TGG | - | chr4.3:66374301-66374320 | MS.gene93942:CDS | 30.0% |
| !!! | GATTTTTTGGTGTGTGAATA+TGG | - | chr4.3:66374314-66374333 | MS.gene93942:CDS | 30.0% |
| AAAATGTGGTAGGTGCTTAA+TGG | + | chr4.3:66374899-66374918 | None:intergenic | 35.0% | |
| AAATATTTGTAACCGAGTCC+CGG | - | chr4.3:66375437-66375456 | MS.gene93942:intron | 35.0% | |
| AAGTCATTGAAAAGAGCTAC+AGG | + | chr4.3:66374419-66374438 | None:intergenic | 35.0% | |
| AATCTTCCTCATAAGCTCTA+AGG | + | chr4.3:66375699-66375718 | None:intergenic | 35.0% | |
| AGAGCTTATGAGGAAGATTT+GGG | - | chr4.3:66375700-66375719 | MS.gene93942:intron | 35.0% | |
| ATAACACCTACAAGTTCCTT+TGG | + | chr4.3:66375245-66375264 | None:intergenic | 35.0% | |
| ATATAGGTATGCTTGTTTGG+TGG | - | chr4.3:66375199-66375218 | MS.gene93942:CDS | 35.0% | |
| ATCAAAGCAGATGTTGAACT+AGG | + | chr4.3:66376089-66376108 | None:intergenic | 35.0% | |
| CAGCTATTCCTGAAATGTAA+AGG | + | chr4.3:66375331-66375350 | None:intergenic | 35.0% | |
| GAATGATCAAGATTCACCAA+AGG | - | chr4.3:66375226-66375245 | MS.gene93942:CDS | 35.0% | |
| TAGAGCTTATGAGGAAGATT+TGG | - | chr4.3:66375699-66375718 | MS.gene93942:intron | 35.0% | |
| TATTTCAGTGTCATCAATCG+TGG | - | chr4.3:66375992-66376011 | MS.gene93942:intron | 35.0% | |
| TTAAATACTCACCTCCTGAT+AGG | - | chr4.3:66375000-66375019 | MS.gene93942:intron | 35.0% | |
| TTGCTTCTCAAATTGTAGGA+TGG | - | chr4.3:66374619-66374638 | MS.gene93942:intron | 35.0% | |
| ! | TAAGTAGAGAATCTGGAGTT+CGG | - | chr4.3:66374698-66374717 | MS.gene93942:CDS | 35.0% |
| ! | TCTTTTCCCAAATTGTGTAG+TGG | - | chr4.3:66374652-66374671 | MS.gene93942:intron | 35.0% |
| !! | CAAGAGTACCTTTACATTTC+AGG | - | chr4.3:66375320-66375339 | MS.gene93942:intron | 35.0% |
| !! | TTTTGGTGTGTGAATATGGA+TGG | - | chr4.3:66374318-66374337 | MS.gene93942:CDS | 35.0% |
| ACAATCAAAGAGAGAGCTCA+AGG | - | chr4.3:66376165-66376184 | MS.gene93942:CDS | 40.0% | |
| AGAAGGAAAAGACGATTGCA+AGG | + | chr4.3:66376060-66376079 | None:intergenic | 40.0% | |
| ATCCACCATGGACAAGTAAT+TGG | - | chr4.3:66375770-66375789 | MS.gene93942:intron | 40.0% | |
| CAACAAATGTACCTATCAGG+AGG | + | chr4.3:66375014-66375033 | None:intergenic | 40.0% | |
| CAATCAAAGAGAGAGCTCAA+GGG | - | chr4.3:66376166-66376185 | MS.gene93942:CDS | 40.0% | |
| CGAACATTGTACACAAATGC+TGG | - | chr4.3:66375727-66375746 | MS.gene93942:intron | 40.0% | |
| GAAGATGTTCAAGCACATCT+TGG | + | chr4.3:66375289-66375308 | None:intergenic | 40.0% | |
| GATTCACCAAAGGAACTTGT+AGG | - | chr4.3:66375236-66375255 | MS.gene93942:CDS | 40.0% | |
| GCTAAACCACTAGTTGCTAA+TGG | + | chr4.3:66375529-66375548 | None:intergenic | 40.0% | |
| GTGAATATGGATGGAGGATA+AGG | - | chr4.3:66374327-66374346 | MS.gene93942:CDS | 40.0% | |
| GTGGATCTTTAGACACAAGT+TGG | + | chr4.3:66375756-66375775 | None:intergenic | 40.0% | |
| TCCACCATGGACAAGTAATT+GGG | - | chr4.3:66375771-66375790 | MS.gene93942:intron | 40.0% | |
| TCTTGTCCTTAGAGCTTATG+AGG | - | chr4.3:66375690-66375709 | MS.gene93942:intron | 40.0% | |
| TTGTGTCTAAAGATCCACCA+TGG | - | chr4.3:66375758-66375777 | MS.gene93942:intron | 40.0% | |
| ! | AAATAGGCTGAAGTGCTTTC+AGG | - | chr4.3:66374963-66374982 | MS.gene93942:intron | 40.0% |
| ! | ATGAGACTAATTGATGGCAC+AGG | - | chr4.3:66375599-66375618 | MS.gene93942:intron | 40.0% |
| ! | GTTGAACTAGGTTTTGCAGA+AGG | + | chr4.3:66376077-66376096 | None:intergenic | 40.0% |
| !!! | TTTTTTTGTGTTCCGGGACT+CGG | + | chr4.3:66375452-66375471 | None:intergenic | 40.0% |
| ACCCAATTACTTGTCCATGG+TGG | + | chr4.3:66375775-66375794 | None:intergenic | 45.0% | |
| CCAACCCAATTACTTGTCCA+TGG | + | chr4.3:66375778-66375797 | None:intergenic | 45.0% | |
| CCATGGACAAGTAATTGGGT+TGG | - | chr4.3:66375775-66375794 | MS.gene93942:intron | 45.0% | |
| TAGCTGTCTCCAATGCTTTC+AGG | - | chr4.3:66375345-66375364 | MS.gene93942:intron | 45.0% | |
| TCGCTACCATTAGCAACTAG+TGG | - | chr4.3:66375520-66375539 | MS.gene93942:intron | 45.0% | |
| TGGTGTGTGAATATGGATGG+AGG | - | chr4.3:66374321-66374340 | MS.gene93942:CDS | 45.0% | |
| ! | AGACTAATTGATGGCACAGG+AGG | - | chr4.3:66375602-66375621 | MS.gene93942:intron | 45.0% |
| AGGTACTCTTGTGCATCAGC+AGG | + | chr4.3:66375311-66375330 | None:intergenic | 50.0% | |
| ! | CTAATTGATGGCACAGGAGG+AGG | - | chr4.3:66375605-66375624 | MS.gene93942:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 66374269 | 66376207 | 66374269 | ID=MS.gene93942 |
| chr4.3 | mRNA | 66374269 | 66376207 | 66374269 | ID=MS.gene93942.t1;Parent=MS.gene93942 |
| chr4.3 | exon | 66376019 | 66376207 | 66376019 | ID=MS.gene93942.t1.exon1;Parent=MS.gene93942.t1 |
| chr4.3 | CDS | 66376019 | 66376207 | 66376019 | ID=cds.MS.gene93942.t1;Parent=MS.gene93942.t1 |
| chr4.3 | exon | 66375455 | 66375507 | 66375455 | ID=MS.gene93942.t1.exon2;Parent=MS.gene93942.t1 |
| chr4.3 | CDS | 66375455 | 66375507 | 66375455 | ID=cds.MS.gene93942.t1;Parent=MS.gene93942.t1 |
| chr4.3 | exon | 66375110 | 66375271 | 66375110 | ID=MS.gene93942.t1.exon3;Parent=MS.gene93942.t1 |
| chr4.3 | CDS | 66375110 | 66375271 | 66375110 | ID=cds.MS.gene93942.t1;Parent=MS.gene93942.t1 |
| chr4.3 | exon | 66374692 | 66374855 | 66374692 | ID=MS.gene93942.t1.exon4;Parent=MS.gene93942.t1 |
| chr4.3 | CDS | 66374692 | 66374855 | 66374692 | ID=cds.MS.gene93942.t1;Parent=MS.gene93942.t1 |
| chr4.3 | exon | 66374269 | 66374351 | 66374269 | ID=MS.gene93942.t1.exon5;Parent=MS.gene93942.t1 |
| chr4.3 | CDS | 66374269 | 66374351 | 66374269 | ID=cds.MS.gene93942.t1;Parent=MS.gene93942.t1 |
| Gene Sequence |
| Protein sequence |
