AlfalfaGEDB | MS.gene98395

M. sativa cultivar XinJiangDaYe / MS.gene98395

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98395.t1	XP_013463687.1	98.4	506	8	0	1	506	1	506	2.20E-278	967.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98395.t1	Q8LEB6	67.7	504	138	9	1	500	1	483	7.0e-180	631.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98395.t1	A0A072V7B9	98.4	506	8	0	1	506	1	506	1.6e-278	967.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049350	MS.gene98395	0.80818	3.51E-50	-1.69E-46
MS.gene049711	MS.gene98395	0.825346	4.93E-54	-1.69E-46
MS.gene049807	MS.gene98395	0.828731	7.64E-55	-1.69E-46
MS.gene049821	MS.gene98395	0.802521	5.39E-49	-1.69E-46
MS.gene049887	MS.gene98395	0.842321	2.78E-58	-1.69E-46
MS.gene050807	MS.gene98395	0.850761	1.38E-60	-1.69E-46
MS.gene050808	MS.gene98395	0.824838	6.50E-54	-1.69E-46
MS.gene050838	MS.gene98395	0.80537	1.38E-49	-1.69E-46
MS.gene050901	MS.gene98395	0.801778	7.67E-49	-1.69E-46
MS.gene051247	MS.gene98395	0.812568	3.97E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene030149	MS.gene98395	PPI
MS.gene26791	MS.gene98395	PPI
MS.gene98395	MS.gene68620	PPI
MS.gene98395	MS.gene033965	PPI
MS.gene98395	MS.gene064153	PPI
MS.gene98395	MS.gene062043	PPI
MS.gene98395	MS.gene068925	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98395.t1	MTR_2g046130	99.012	506	5	0	1	506	1	506	0.0	1029
MS.gene98395.t1	MTR_4g123880	83.135	504	80	3	1	504	1	499	0.0	861
MS.gene98395.t1	MTR_4g123880	84.086	465	69	3	1	465	1	460	0.0	803
MS.gene98395.t1	MTR_7g111690	73.465	505	120	6	1	492	1	504	0.0	729
MS.gene98395.t1	MTR_3g047890	64.909	493	159	8	5	492	7	490	0.0	627
MS.gene98395.t1	MTR_5g091380	64.683	504	157	10	5	499	7	498	0.0	613
MS.gene98395.t1	MTR_7g111690	70.952	420	106	6	1	405	1	419	0.0	585
MS.gene98395.t1	MTR_8g028695	52.183	504	183	7	2	493	6	463	6.33e-165	475
MS.gene98395.t1	MTR_7g078730	49.216	510	189	8	5	499	9	463	1.81e-164	475
MS.gene98395.t1	MTR_5g017080	49.797	492	217	6	2	486	6	474	6.59e-159	461

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene98395.t1	AT1G56720	69.822	507	134	8	1	503	1	492	666
MS.gene98395.t1	AT1G56720	69.822	507	134	8	1	503	1	492	666
MS.gene98395.t1	AT1G56720	69.822	507	134	8	1	503	1	492	666
MS.gene98395.t1	AT1G56720	69.822	507	134	8	1	503	1	492	666
MS.gene98395.t1	AT5G18500	68.056	504	136	10	1	500	1	483	659
MS.gene98395.t1	AT5G18500	68.056	504	136	10	1	500	1	483	659
MS.gene98395.t1	AT5G18500	68.056	504	136	10	1	500	1	483	659
MS.gene98395.t1	AT5G18500	68.056	504	136	10	1	500	1	483	659
MS.gene98395.t1	AT5G18500	68.056	504	136	10	1	500	1	483	659
MS.gene98395.t1	AT5G18500	68.056	504	136	10	1	500	1	483	659

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Find 132 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACAATATTATCGGTGA+AGG	0.562362	2.4:-44877625	MS.gene98395:CDS
AAATAACTTACAAATTATTG+AGG	0.519770	2.4:+44877539	None:intergenic
AACTTAGAGCAATGGCTTCA+CGG	0.472507	2.4:-44876976	MS.gene98395:CDS
AAGAGCGGCATGCTTCCTCT+TGG	0.493646	2.4:-44878024	MS.gene98395:CDS
AAGAGTGATGTTTATAGTTT+TGG	0.250603	2.4:-44875767	MS.gene98395:CDS
AAGATAGCCATGCTGCCGCA+TGG	0.570137	2.4:+44876951	None:intergenic
AAGCCAGAATTGGCATATTC+TGG	0.388285	2.4:+44875800	None:intergenic
AAGGAATCAAGCAGGAAACA+CGG	0.624152	2.4:-44873756	MS.gene98395:CDS
AAGTCTAGAAGAGGCAAGAG+CGG	0.588933	2.4:-44878039	MS.gene98395:CDS
AAGTTTAGTGACGGCGATTC+TGG	0.230193	2.4:-44877901	MS.gene98395:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGTGTTTATAAGTGGG+AGG	+	chr2.4:44877093-44877112	None:intergenic	30.0%
AAAGACAATATTATCGGTGA+AGG	-	chr2.4:44874222-44874241	MS.gene98395:intron	30.0%
AAATTGTGTGAGTGAAAAGT+TGG	-	chr2.4:44877828-44877847	MS.gene98395:CDS	30.0%
ACAAGCTGAAAAGGAATTTA+GGG	-	chr2.4:44874473-44874492	MS.gene98395:intron	30.0%
AGAAAAGAAAGCCAAACAAA+AGG	-	chr2.4:44876922-44876941	MS.gene98395:CDS	30.0%
ATAGATAAAATATGGCCAAG+AGG	+	chr2.4:44873841-44873860	None:intergenic	30.0%
ATAGGAACTTTGGTATTATG+GGG	+	chr2.4:44877358-44877377	None:intergenic	30.0%
ATCATAAATCAAATGGGAGA+AGG	-	chr2.4:44878165-44878184	MS.gene98395:CDS	30.0%
ATCCATTCTACTACTCAATA+AGG	-	chr2.4:44877322-44877341	MS.gene98395:CDS	30.0%
CACACAAAAATTAGCATCAT+TGG	-	chr2.4:44875423-44875442	MS.gene98395:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	44873667	44878202	44873667	ID=MS.gene98395
chr2.4	mRNA	44873667	44878202	44873667	ID=MS.gene98395.t1;Parent=MS.gene98395
chr2.4	exon	44877550	44878202	44877550	ID=MS.gene98395.t1.exon1;Parent=MS.gene98395.t1
chr2.4	CDS	44877550	44878202	44877550	ID=cds.MS.gene98395.t1;Parent=MS.gene98395.t1
chr2.4	exon	44877295	44877399	44877295	ID=MS.gene98395.t1.exon2;Parent=MS.gene98395.t1
chr2.4	CDS	44877295	44877399	44877295	ID=cds.MS.gene98395.t1;Parent=MS.gene98395.t1
chr2.4	exon	44876907	44877029	44876907	ID=MS.gene98395.t1.exon3;Parent=MS.gene98395.t1
chr2.4	CDS	44876907	44877029	44876907	ID=cds.MS.gene98395.t1;Parent=MS.gene98395.t1
chr2.4	exon	44876618	44876788	44876618	ID=MS.gene98395.t1.exon4;Parent=MS.gene98395.t1
chr2.4	CDS	44876618	44876788	44876618	ID=cds.MS.gene98395.t1;Parent=MS.gene98395.t1
chr2.4	exon	44875703	44875832	44875703	ID=MS.gene98395.t1.exon5;Parent=MS.gene98395.t1
chr2.4	CDS	44875703	44875832	44875703	ID=cds.MS.gene98395.t1;Parent=MS.gene98395.t1
chr2.4	exon	44875034	44875246	44875034	ID=MS.gene98395.t1.exon6;Parent=MS.gene98395.t1
chr2.4	CDS	44875034	44875246	44875034	ID=cds.MS.gene98395.t1;Parent=MS.gene98395.t1
chr2.4	exon	44873667	44873792	44873667	ID=MS.gene98395.t1.exon7;Parent=MS.gene98395.t1
chr2.4	CDS	44873667	44873792	44873667	ID=cds.MS.gene98395.t1;Parent=MS.gene98395.t1

Gene Sequence

>MS.gene98395

ATGGCATCTGATCTAAATTCAGGGTTGTCAAAGAAAACAAATGTTTTTGGATTGAAAGTGTGGGTATTAATGGGAATAGTGGTTGGTTTGTTCATTATAATCATTCTTGTGGTGCTATCGATATGTCTTACTTTAAGAAAGAAGTCTAGAAGAGGCAAGAGCGGCATGCTTCCTCTTGGCCATATTTTATCTATTTCAGAAGAGATCAAAGAAATTAGTGTCGATCAAGTTTCATCGAATAATCATCAGCATAATGGTTCTTTTATGAGCTTGAATGATAAGTTTAGTGACGGCGATTCTGGAAAGGTTTTGATCCAAACAAAGAATGGAGATAATAGTAGTCAATCAGGCTCGTTTAATCGTTTAGAGAAAGATCTGAATGGCTCTCAGTCAGGTGAAGACAGCGGCGGTTTTAGGAGCATTTCGGCTTATAGGTCTTCGTCGCATCCTATATCCGCACCATCGCCGTGTTCTGGTCTGCCTGAATTCTCTCACCTTGGTTGGGGCCACTGGTTTACGTTAAGGGACCTTGAACTTGCAACGAATAGGTTTGCAAAAGACAATATTATCGGTGAAGGTGGTTATGGAGTTGTCTATCGAGGTCAACTTATCAATGGGAATCCTGTGGCCGTTAAGAAACTCCTCAATAATTTGTAAGTTATTTCCTTAATAGTTTCGTTGCAGCCTTTAGTTTTTGTTTTTTGAAATATGAACAAGGTTTTATAATGTTGTGTTTTCATGTTTTATTAGCATGTCTCAAATGCAGTTAGTTTATCAAATAACTGTTAATGTTCATCATGCAGAGGACAAGCTGAAAAGGAATTTAGGGTGGAAGTTGAGGCTATTGGTCATGTGCGGCATAAGAACTTGGTTCGGCTTTTGGGTTTTTGCATTGAAGGCACTCACAGGTAGCAAATTGTTTATTGTCTGCGTTATGCATGTGTTTGACTATAATTTTACGCCCATAAAAGCTTACAATGTGGTTAATGTTTGCATCATCATTGTATTCATCTTAAAAATCTATCAAATGCTTCAAAAATCAAGTATTTACGTCTTTCTAGCATTGGTGAATAACATGGATTTATATCCCAATTGTATTTGCTTACTAATCTATTAGTACCGGTTTATATTATTTATAGATTTATTTTTTATTGAATTTGCTATTTATTTCAGGTTACTGATTTACGAGTATGTTAACAATGGAAACTTAGAGCAATGGCTTCACGGAGCCATGCGGCAGCATGGCTATCTTACTTGGGAAGCTCGGATGAAAATTCTTCTTGGAACAGCCAAAGCGTATGCTCATTTCTTTTTAAATTAAAAAACCACTGATCAACAAGTTTCCTGAGTCTATTTTGTTGAATGAGTTTCCTTTTTATCTATGATTAATTTGATTGATTATTGTATCTTGTAGGCTTGCTTACTTGCACGAGGCGATTGAGCCAAAAGTTGTACATCGAGATATTAAGTCGAGCAATATTCTAATTGATGATAGCTTTAATGCTAAAATTTCTGACTTTGGGCTTGCTAAGTTACTTGGTGCTGGAAAAAGTCACATTACAACTAGAGTAATGGGTACTTTCGGGTAAGCTTCATGTTCCACATTACACTGTGACGTGCATTTTTTCAATATTGCAAATTAAGAAAGTATATAATTATTCACAGTCTAGTCATAATTACAATATATCCATATTAAGTAGTATTTTCCTTTAACAATCTGTAGTATTTCTACCAAAATATGGCATTTATTCATTTACACACAAAAATTAGCATCATTGGTTTGGTTTTTTTATTCATTAAACTGTTATTATATGCAGAGAAGTCGTAGCTGTATGTAATTAGCTTCTTCGTTTCATGCTTACATTGCATTTTTAAGATATGAGGCTCTATAGTATATCAATTTTGGACTAAACCACCAAATTAGTCCTTGGCTTCGTAGGATGCTCTCAAATAGGTTCCTGAGTTTATGAATATCTATAAAAGGTCTCTGACTCTGTCCAATTTTACTCATATTAGTCCTTCAGGGAATATGCTAGGGACTAAATTGATAGTAAGTGAATAAATATGAGGACTAACTTGACAGTTTTATAGAGTCGGAGACCTCTTTGAAATATTCATAATCTCAGAGACCTATTTGAGAATGCCCTACAAAGTAGAGGACTAAGTTGGTGGTCTACTAATCGATTCTGTTTGTCTTGATGAAAGCAAGGACCAAGCAAAAATTTTAATGATTAATTGTGACCTTTGAGTTTCAATTCAACTATATCGTAGTCGACACTTATTAGAATCTGACAAAGTTGACCTCTTTGTTCTTCAGTTTTAATTTTATAGAAATTAATTCTGTTGTGTGCTTTTGCTGCATTTTTACAGATATGTAGCTCCAGAATATGCCAATTCTGGCTTGTTAAATGAGAAGAGTGATGTTTATAGTTTTGGCGTTTTGCTTCTTGAAGCAATTACAGGAAGAGATCCGGTCGATTATAGCCGACCAGCAGCTGAGGTGTGTCACTGTCATCGGTTTTCTGTAGAAAATCATAAATACTACTAATATTCTTAGTTCTTACTATTTTCTATCTTAAAATGAATTATGAATTTGAAGAATGAAACACATTGGTGCGAATGACAACTTAAGGGCCCATTTACTTTCTATCAACACTTTCAATTTTTACCTTGTATGTAGCTTTCTGGCATGACATTTGGTTATAGATTTTCCTTTTAAATTGTATTAGAAAGAAAAGGGAAGGTAACTAAAGTGAATGCATTTTCGGAAACACTGAAAACAATATTTTGAAATTTTTCAATCTATTTTTAAAATGCATTTTCCAAAATTACCATAATGTTTATTTATCAAGAAACACCAGAAGTACACAACCCCTTTTTATTCATAATTTTCTTCCTATTACTACAGTTTTGCTTATTAGACTTTCCTTGATACAATTTTGGTTGTTTCTTAAAGGTAAATTTGGTTGATTGGCTCAAGATGATGGTTGGGTGTAGGCGTTCAGAAGAGGTGGTGGACCCCATGATTGAGACTAGGCCATCAACAAGTGCTCTAAAACGATCCCTCTTAACTGCTTTGAGATGTGTTGATCCAGATTCTGAAAAAAGACCAAAGATGACCCAAGTTGTTCGCATGCTTGAATCGGAGGAATATCCCATACCTCGAGAGGTTTGACATTTTATTGTTATATTTTCCAATGTAGTATGCCAATCTGTGCTTTATGAAATTACATTTGTCTCTTTATAACAACATTTAGAAAAGAAAGCCAAACAAAAGGGCAGGAGCACGAAAGAAAATGGGAATGAGAAAAACTACAAAATTGTTCTGTTTTTACTTTTAATTACAAAATTGTCCCGTGTTTTTCTTAAAATTTGGGTTGAGCCAAACTCAACCCTACAAAACTGGCTTGTAAGTTGGAGATACCTCCCACTTATAAACACATTTTTGGCCATATTCCGTCCAATCCAATGTAGCGCTCTCAATACATCCCCTTGCATTAAGGATTGGACATCCGGTGCGTGGGCGGCTCAACAGGTCTTAGATAAGCTCTAATACCAGTTGGTAGGCATCTAAGAACATGGAGAACCCTCACTTAAAAGCTAGCTATCGACAGGGAAGAACCAGACCACTTAAATACTTTACCGTCTATCAAGCATCCATTCTACTACTCAATAAGGGATTTTGGCACCCCATAATACCAAAGTTCCTATCATAGCTTGAGAGTCAACGTCCCAATGGCTTCACGCTACAAAATTTCACTCATCCTTTCCTGTCGGCCCCTCCATAGGTAGCCGTAGCCCTTTCTGAGCTATCAACAACTAGCTCTGATACCTTCTTAAAATTTGGGTTGGCTTAACCCTTCTCCAACTTACAACACACATTTTCATGTCATATCTCATTTGATGTAGGACTCTCAATAACTATCACTTTGTTTCCAATTTTCATAGATTTGTATAGAAAACAATGAAAATGACTTCTAAGCAACATTTTTTGAGATAAATGCTACTCCCTCCGTTTCACAATGAGTGTCGTTTAAGGTTTTGGCACACAGATTAAGAAATGGAATGAAATAATTATTAGACATAATACTTTTACTAAACTGCCTTTACTTTATAAGAAAAAGACAAAATTAAAGTTGTATTGAAAATTGTGTGAGTGAAAAATTGTGTGAGTGAAAAGTTGGAGTATTTATTTAGGGTAAAGTTGGAAGAAAAAAATTAAAGTTGTATTGGAAATGTAAAGTGACATTCATTTTGAAACAAATTTTTTTGGGTAAAGTGACACTCATTTTGAAAACGGAGGGAGTACGACACATCTATTTTGAGACCACCTTTTTAAAAAAACTTAATTGATTTTAGGTTGTATATTTGTAACGTGTTGTTTCTCAAATATTTTGGCTAACATTTCAGGACCGAAGACGGAGAAGGAATCAAGCAGGAAACACGGAGGGAGAGAGCCAGAGGGAGGCTTCTGATACCGACAAAAGTGACAATCCAGATCATAAATCAAATGGGAGAAGGAACCAAAACCTGTAG

Protein sequence

>MS.gene98395.t1

MASDLNSGLSKKTNVFGLKVWVLMGIVVGLFIIIILVVLSICLTLRKKSRRGKSGMLPLGHILSISEEIKEISVDQVSSNNHQHNGSFMSLNDKFSDGDSGKVLIQTKNGDNSSQSGSFNRLEKDLNGSQSGEDSGGFRSISAYRSSSHPISAPSPCSGLPEFSHLGWGHWFTLRDLELATNRFAKDNIIGEGGYGVVYRGQLINGNPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCIEGTHRLLIYEYVNNGNLEQWLHGAMRQHGYLTWEARMKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDSFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPAAEVNLVDWLKMMVGCRRSEEVVDPMIETRPSTSALKRSLLTALRCVDPDSEKRPKMTQVVRMLESEEYPIPREDRRRRRNQAGNTEGESQREASDTDKSDNPDHKSNGRRNQNL