AlfalfaGEDB | MsG0080048137.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048137.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048137.01.T01	XP_003600586.1	98.592	71	1	0	1	71	1	71	2.46E-42	142

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048137.01	MsG0080048197.01	0.827967	1.167301e-54	1.144495e-51
MsG0080048137.01	MsG0180001043.01	0.821558	3.788047e-53	3.092178e-50
MsG0080048137.01	MsG0180001599.01	0.821489	3.929436e-53	3.201348e-50
MsG0080048137.01	MsG0180002283.01	0.809249	2.077330e-50	1.213569e-47
MsG0080048137.01	MsG0180002489.01	0.864729	9.856808e-65	3.126790e-61
MsG0080048137.01	MsG0180002491.01	0.854745	1.002994e-61	2.262851e-58
MsG0080048137.01	MsG0180003088.01	0.842086	3.205690e-58	4.807022e-55
MsG0080048137.01	MsG0180003793.01	0.808535	2.953101e-50	1.692797e-47
MsG0080048137.01	MsG0180006013.01	0.801497	8.757035e-49	4.188332e-46
MsG0080048137.01	MsG0180006016.01	0.802533	5.363025e-49	2.633389e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048137.01.T01	MTR_3g063970	98.592	71	1	0	1	71	1	71	2.98e-46	142
MsG0080048137.01.T01	MTR_3g063970	97.917	48	1	0	1	48	1	48	6.63e-16	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048137.01.T01	AT3G14430	65.079	63	21	1	9	71	15	76	1.08e-24	87.8

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Find 17 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCAATTCCTTTAAAA+GGG	0.443719	contig218end:-7084	MsG0080048137.01.T01:intergenic
AAACTCAGCATTTCTTACGA+AGG	0.638252	contig218end:-6079	MsG0080048137.01.T01:intergenic
ACAAATACTTGATTGTATTC+AGG	0.336136	contig218end:-7030	MsG0080048137.01.T01:intergenic
AGAGAACAGCGATGGCTAGA+CGG	0.584999	contig218end:+6001	MsG0080048137.01.T01:exon
ATTTCTTACGAAGGCGAAAA+TGG	0.322719	contig218end:-6070	MsG0080048137.01.T01:intergenic
CAAACATCAATTCCTTTAAA+AGG	0.150864	contig218end:-7085	MsG0080048137.01.T01:intergenic
CAAAGCTCTGGTCCACCACC+AGG	0.488950	contig218end:-7060	MsG0080048137.01.T01:intergenic
CAAGTATTTGTGAAGAAGCC+TGG	0.508253	contig218end:+7042	MsG0080048137.01.T01:CDS
CAGAGAGAAGAAGACTAGAC+TGG	0.543222	contig218end:+5956	MsG0080048137.01.T01:five_prime_UTR
CTAGACGGCGAGTCGAGACT+CGG	0.585126	contig218end:+6016	MsG0080048137.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCTGATTCCAATTGGAAT+TGG	+	contig218end:6375-6394	MsG0080048137.01.T01:intron	30.0%
TGAAATTACAAGACAAACAG+AGG	-	contig218end:6958-6977	MsG0080048137.01.T01:intergenic	30.0%
TGAAGAAGAAAAGAAAGAAG+AGG	-	contig218end:6110-6129	MsG0080048137.01.T01:intergenic	30.0%
AAACTCAGCATTTCTTACGA+AGG	-	contig218end:6082-6101	MsG0080048136.01.T01:intergenic	35.0%
AATTACAAGACAAACAGAGG+AGG	-	contig218end:6955-6974	MsG0080048136.01.T01:intergenic	35.0%
ATTACAAGACAAACAGAGGA+GGG	-	contig218end:6954-6973	MsG0080048137.01.T01:intergenic	35.0%
ATTTCTTACGAAGGCGAAAA+TGG	-	contig218end:6073-6092	MsG0080048137.01.T01:intergenic	35.0%
GATTACGAGTCTGTTTGAAT+TGG	-	contig218end:6628-6647	MsG0080048137.01.T01:intergenic	35.0%
GTAGAGATTCTGATTCCAAT+TGG	+	contig218end:6369-6388	MsG0080048137.01.T01:intron	35.0%
TGGTGTATCATGTATGAACA+CGG	+	contig218end:6678-6697	MsG0080048137.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
contig218end	gene	5952	7092	5952	ID=MsG0080048137.01;Name=MsG0080048137.01
contig218end	mRNA	5952	7092	5952	ID=MsG0080048137.01.T01;Parent=MsG0080048137.01;Name=MsG0080048137.01.T01;_AED=0.33;_eAED=0.33;_QI=60\|1\|1\|1\|0\|0.5\|2\|0\|71
contig218end	exon	5952	6155	5952	ID=MsG0080048137.01.T01:exon:36057;Parent=MsG0080048137.01.T01
contig218end	exon	7021	7092	7021	ID=MsG0080048137.01.T01:exon:36058;Parent=MsG0080048137.01.T01
contig218end	five_prime_UTR	5952	6011	5952	ID=MsG0080048137.01.T01:five_prime_utr;Parent=MsG0080048137.01.T01
contig218end	CDS	6012	6155	6012	ID=MsG0080048137.01.T01:cds;Parent=MsG0080048137.01.T01
contig218end	CDS	7021	7092	7021	ID=MsG0080048137.01.T01:cds;Parent=MsG0080048137.01.T01

Gene Sequence	>MsG0080048137.01.T01 ATGGCTAGACGGCGAGTCGAGACTCGGAACGAGTCTTTATTGACTCGGATTGTTGATTCCATTTTCGCCTTCGTAAGAAATGCTGAGTTTGAGATCCTCTTCTTTCTTTTCTTCTTCATCGCTTATATTCTCTTCAAAGACATCACATCAAGACCTGAATACAATCAAGTATTTGTGAAGAAGCCTGGTGGTGGACCAGAGCTTTGGCCCTTTTAA
Protein sequence	>MsG0080048137.01.T01 MARRRVETRNESLLTRIVDSIFAFVRNAEFEILFFLFFFIAYILFKDITSRPEYNQVFVKKPGGGPELWPF*