AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380018001.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018001.01.T01 MTR_3g116830 81.683 202 13 2 1 202 1 178 1.06e-100 289
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380018001.01.T01 AT2G21620 65.347 202 45 4 1 202 1 177 3.57e-79 234
MsG0380018001.01.T01 AT2G21620 63.462 208 45 5 1 202 1 183 1.88e-76 228

Find 48 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTGTTCATGCTGCTTC+TGG 0.175140 3:-103088952 MsG0380018001.01.T01:intron
TAAACCTGCAGCTGTGGTTT+TGG 0.252116 3:-103086563 MsG0380018001.01.T01:CDS
CCAGAGCTTGAGAGGGAAAC+AGG 0.303413 3:-103089084 MsG0380018001.01.T01:CDS
AAGTGAAGATTGTAAATTAA+TGG 0.331046 3:-103089184 MsG0380018001.01.T01:exon
GCACCTGTTGTGATCGTTCC+TGG 0.338638 3:-103086332 MsG0380018001.01.T01:CDS
TCAAAAGCATGTTTACTGTT+TGG 0.339328 3:+103089015 None:intergenic
AGCTCTGGCTCAGGCACTAT+TGG 0.369995 3:+103089099 None:intergenic
ACTGTTTGGACCATGATCTA+TGG 0.408420 3:+103089029 None:intergenic
TTGAAACAAGCTTCTGCCTC+TGG 0.408871 3:+103086537 None:intergenic
GAAACAGGGGAGAGGAGAAG+AGG 0.410536 3:-103089069 MsG0380018001.01.T01:CDS
CAGGGGAGAGGAGAAGAGGA+AGG 0.414721 3:-103089065 MsG0380018001.01.T01:CDS
GTGATGCATCAATCGTCTAA+TGG 0.415705 3:-103086209 None:intergenic
CGACTTAACCCAGGGATTGA+TGG 0.429955 3:-103088767 MsG0380018001.01.T01:CDS
CTAATTTCTCCATCAATCCC+TGG 0.431733 3:+103088758 None:intergenic
ACAATCTTCACTTCACAACT+TGG 0.437242 3:+103089194 None:intergenic
CCTGTTTCCCTCTCAAGCTC+TGG 0.443040 3:+103089084 None:intergenic
TCCCTCTCAAGCTCTGGCTC+AGG 0.455326 3:+103089090 None:intergenic
TTTCCAGGAACGATCACAAC+AGG 0.474556 3:+103086329 None:intergenic
GAGGCAGAAGCTTGTTTCAA+AGG 0.482260 3:-103086534 MsG0380018001.01.T01:intron
CGGATAGTGCAAGGTGATGC+AGG 0.488351 3:-103086616 MsG0380018001.01.T01:CDS
TCCTTGTAGCACACTGAAGA+AGG 0.496334 3:+103086389 None:intergenic
GCTTCTTTGATGACAGATGC+TGG 0.497828 3:-103086231 MsG0380018001.01.T01:CDS
CAGAGCTTGAGAGGGAAACA+GGG 0.500796 3:-103089083 MsG0380018001.01.T01:CDS
GTCCCCAAAACCACAGCTGC+AGG 0.501479 3:+103086559 None:intergenic
AGGGGAGAGGAGAAGAGGAA+GGG 0.504800 3:-103089064 MsG0380018001.01.T01:CDS
TCCTTCTTCAGTGTGCTACA+AGG 0.530640 3:-103086390 MsG0380018001.01.T01:CDS
TAAATTAATGGAGACAGTGA+TGG 0.533156 3:-103089172 MsG0380018001.01.T01:exon
TAATTTCTCCATCAATCCCT+GGG 0.538350 3:+103088759 None:intergenic
TGCCTGAGCCAGAGCTTGAG+AGG 0.541192 3:-103089092 MsG0380018001.01.T01:CDS
ATAGTATTAGCCATAGATCA+TGG 0.553466 3:-103089039 MsG0380018001.01.T01:CDS
AACAGGTGAAAACAGTAGCT+CGG 0.557174 3:-103086636 MsG0380018001.01.T01:intron
GGCACTATTGGTATCAGAGA+AGG 0.564937 3:+103089111 None:intergenic
GAGGATTAAACCTGCAGCTG+TGG 0.569878 3:-103086569 MsG0380018001.01.T01:CDS
GATGGAGAAATTAGCGGCTG+AGG 0.575246 3:-103088749 MsG0380018001.01.T01:CDS
TTGAGAGGGAAACAGGGGAG+AGG 0.595161 3:-103089077 MsG0380018001.01.T01:CDS
AACCAGAAGCAGCATGAACA+AGG 0.600746 3:+103088950 None:intergenic
GGGATTGATGGAGAAATTAG+CGG 0.601178 3:-103088755 MsG0380018001.01.T01:CDS
GCCTGAGCCAGAGCTTGAGA+GGG 0.610344 3:-103089091 MsG0380018001.01.T01:CDS
TGCAGGAAAAGTAATTTGCA+AGG 0.617105 3:-103086599 MsG0380018001.01.T01:CDS
AGCAGCATGAACAAGGTGGA+TGG 0.620241 3:+103088957 None:intergenic
ACAGTAGCTCGGATAGTGCA+AGG 0.631985 3:-103086625 MsG0380018001.01.T01:CDS
ATTGTGTACGACTTAACCCA+GGG 0.659770 3:-103088775 MsG0380018001.01.T01:CDS
AATTGTGTACGACTTAACCC+AGG 0.666749 3:-103088776 MsG0380018001.01.T01:CDS
AGAGCTTGAGAGGGAAACAG+GGG 0.669601 3:-103089082 MsG0380018001.01.T01:CDS
CAGAAGCAGCATGAACAAGG+TGG 0.682880 3:+103088953 None:intergenic
CAACAGGTGCTGCTTTACAG+TGG 0.687014 3:+103086345 None:intergenic
AGTGTGCTACAAGGAAGCGT+CGG 0.687872 3:-103086381 MsG0380018001.01.T01:CDS
TAATTTGCAAGGAAGCAGAG+AGG 0.695628 3:-103086588 MsG0380018001.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTATTTTTATTAA+AGG + Chr3:103086222-103086241 None:intergenic 0.0%
!! AAAAAAACATATACAAATAA+TGG + Chr3:103089075-103089094 None:intergenic 10.0%
!! AAATGATAAAAATAGTAATT+AGG + Chr3:103089197-103089216 None:intergenic 10.0%
!!! AATATTGTGAATTTATTTTT+TGG - Chr3:103088732-103088751 MsG0380018001.01.T01:CDS 10.0%
!! TCCAATTTGAAAAATTATAT+AGG - Chr3:103086811-103086830 MsG0380018001.01.T01:intron 15.0%
!!! TAATTGAAGTTTTGTTTTTA+TGG - Chr3:103086623-103086642 MsG0380018001.01.T01:CDS 15.0%
!!! TATGGATTTTTTATTACTTA+TGG - Chr3:103086641-103086660 MsG0380018001.01.T01:intron 15.0%
!!! TATTACAAGTTGATTTTATA+CGG + Chr3:103088573-103088592 None:intergenic 15.0%
!!! TCCTATATAATTTTTCAAAT+TGG + Chr3:103086815-103086834 None:intergenic 15.0%
!! AAAACTAAAGTAAAAAGAGA+AGG - Chr3:103087761-103087780 MsG0380018001.01.T01:intron 20.0%
!! AAGTGAAGATTGTAAATTAA+TGG - Chr3:103086300-103086319 MsG0380018001.01.T01:intron 20.0%
!! ACATGTAAAAAAAAACAATG+GGG - Chr3:103088376-103088395 MsG0380018001.01.T01:intron 20.0%
!! ATATCTTGAAATATTTATGG+AGG - Chr3:103088425-103088444 MsG0380018001.01.T01:intron 20.0%
!! ATATTGATATGGAAAATCTA+CGG - Chr3:103087810-103087829 MsG0380018001.01.T01:intron 20.0%
!! CACATGTAAAAAAAAACAAT+GGG - Chr3:103088375-103088394 MsG0380018001.01.T01:intron 20.0%
!! TAAAATCAACTTGTAATACA+AGG - Chr3:103088575-103088594 MsG0380018001.01.T01:intron 20.0%
!! TAGAAAATTTGGTAGAAAAT+AGG + Chr3:103087184-103087203 None:intergenic 20.0%
!! TCACATGTAAAAAAAAACAA+TGG - Chr3:103088374-103088393 MsG0380018001.01.T01:intron 20.0%
!! TTCATAAGTAAATAGGAAAT+CGG + Chr3:103086790-103086809 None:intergenic 20.0%
!!! ACAAAACTTATTCTTTTCAA+TGG - Chr3:103088622-103088641 MsG0380018001.01.T01:intron 20.0%
!!! CAAAACTTATTCTTTTCAAT+GGG - Chr3:103088623-103088642 MsG0380018001.01.T01:intron 20.0%
!!! TTCTCTTTTTACTTTAGTTT+TGG + Chr3:103087762-103087781 None:intergenic 20.0%
! AATTCAATCTACAAGAACAA+GGG + Chr3:103088145-103088164 None:intergenic 25.0%
! ACAAATTGTGGTTAATGATT+TGG + Chr3:103086888-103086907 None:intergenic 25.0%
! AGGGTTATTAATACATGTAA+AGG + Chr3:103088660-103088679 None:intergenic 25.0%
! AGTTTAATAATCAACCATCA+TGG - Chr3:103088482-103088501 MsG0380018001.01.T01:intron 25.0%
! ATTGGACTTCATAAGTAAAT+AGG + Chr3:103086797-103086816 None:intergenic 25.0%
! CAATAGCATAATTAAGTCAA+GGG - Chr3:103088401-103088420 MsG0380018001.01.T01:intron 25.0%
! CATACTAATCATAAGTAGAA+TGG + Chr3:103088821-103088840 None:intergenic 25.0%
! GGCATATCTTGAAATATTTA+TGG - Chr3:103088422-103088441 MsG0380018001.01.T01:intron 25.0%
! GTGTTCTATCAAAAACATAT+TGG - Chr3:103087010-103087029 MsG0380018001.01.T01:intron 25.0%
! TAATTCAATCTACAAGAACA+AGG + Chr3:103088146-103088165 None:intergenic 25.0%
! TCAATAGCATAATTAAGTCA+AGG - Chr3:103088400-103088419 MsG0380018001.01.T01:intron 25.0%
! TGTTCTTGTAGATTGAATTA+AGG - Chr3:103088146-103088165 MsG0380018001.01.T01:intron 25.0%
! TTGTAAACAGATTATAGAGA+GGG + Chr3:103088606-103088625 None:intergenic 25.0%
! TTTGTAAACAGATTATAGAG+AGG + Chr3:103088607-103088626 None:intergenic 25.0%
!! TCTACCAAATTTTCTACTAT+GGG - Chr3:103087188-103087207 MsG0380018001.01.T01:intron 25.0%
!! TTCTACCAAATTTTCTACTA+TGG - Chr3:103087187-103087206 MsG0380018001.01.T01:intron 25.0%
!!! ATGTTTTTGATAGAACACTA+TGG + Chr3:103087008-103087027 None:intergenic 25.0%
!!! CTACTTAGTTTTCATTGATT+TGG + Chr3:103087971-103087990 None:intergenic 25.0%
!!! TGGTTTCTAATGGTTTTTTT+AGG - Chr3:103087065-103087084 MsG0380018001.01.T01:intron 25.0%
AACCATTCGAAAAGATTTAG+AGG + Chr3:103087050-103087069 None:intergenic 30.0%
AAGTAAAAAGAGAAGGACTT+AGG - Chr3:103087768-103087787 MsG0380018001.01.T01:intron 30.0%
AGATATCTAAACGTGTAACT+TGG - Chr3:103087501-103087520 MsG0380018001.01.T01:intron 30.0%
AGTAAAAAGAGAAGGACTTA+GGG - Chr3:103087769-103087788 MsG0380018001.01.T01:intron 30.0%
AGTTACACGTTTAGATATCT+TGG + Chr3:103087501-103087520 None:intergenic 30.0%
AGTTATCAATAAATGCTGCA+AGG + Chr3:103088680-103088699 None:intergenic 30.0%
ATAGTATTAGCCATAGATCA+TGG - Chr3:103086445-103086464 MsG0380018001.01.T01:intron 30.0%
ATATCTAAACGTGTAACTTG+GGG - Chr3:103087503-103087522 MsG0380018001.01.T01:intron 30.0%
ATTCAATCTACAAGAACAAG+GGG + Chr3:103088144-103088163 None:intergenic 30.0%
GAGAAAAGTTAAGAAAGTGA+AGG + Chr3:103086568-103086587 None:intergenic 30.0%
GATATCTAAACGTGTAACTT+GGG - Chr3:103087502-103087521 MsG0380018001.01.T01:intron 30.0%
GATTAGTATGATGTGAAAAC+AGG - Chr3:103088831-103088850 MsG0380018001.01.T01:intron 30.0%
GTTACACGTTTAGATATCTT+GGG + Chr3:103087500-103087519 None:intergenic 30.0%
GTTATCAATAAATGCTGCAA+GGG + Chr3:103088679-103088698 None:intergenic 30.0%
TAAATTAATGGAGACAGTGA+TGG - Chr3:103086312-103086331 MsG0380018001.01.T01:intron 30.0%
TAATGAGTGACAAACAATAG+AGG + Chr3:103088762-103088781 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + Chr3:103087117-103087136 None:intergenic 30.0%
TTCAATCCCTTTCTATATCT+CGG - Chr3:103089016-103089035 MsG0380018001.01.T01:CDS 30.0%
TTTCTCCGTCATTTGTATTA+TGG - Chr3:103087473-103087492 MsG0380018001.01.T01:intron 30.0%
! AACTTTTCAACGAGATTATG+AGG + Chr3:103088205-103088224 None:intergenic 30.0%
! ACAGTAAACATGCTTTTGAT+TGG - Chr3:103086473-103086492 MsG0380018001.01.T01:intron 30.0%
! GCAGCATTTATTGATAACTT+TGG - Chr3:103088681-103088700 MsG0380018001.01.T01:intron 30.0%
! TAGTACCTAGAGATATTTTG+TGG + Chr3:103087933-103087952 None:intergenic 30.0%
! TCAAAAGCATGTTTACTGTT+TGG + Chr3:103086472-103086491 None:intergenic 30.0%
! TCTTTTCGAATGGTTTCTAA+TGG - Chr3:103087055-103087074 MsG0380018001.01.T01:intron 30.0%
!! ATACTAATTACGGTGGATTA+GGG - Chr3:103088453-103088472 MsG0380018001.01.T01:intron 30.0%
!! CAGTAAACATGCTTTTGATT+GGG - Chr3:103086474-103086493 MsG0380018001.01.T01:intron 30.0%
!!! AACCAATTTGGTTTTATGCT+TGG + Chr3:103088015-103088034 None:intergenic 30.0%
!!! ACCAATTTGGTTTTATGCTT+GGG + Chr3:103088014-103088033 None:intergenic 30.0%
!!! AGTTTTCATTGATTTGGAGA+AGG + Chr3:103087965-103087984 None:intergenic 30.0%
!!! TTTAGTTTTGGATGTACTGA+CGG + Chr3:103087750-103087769 None:intergenic 30.0%
AACTTTCCTTTCAGCTTAAG+TGG - Chr3:103087371-103087390 MsG0380018001.01.T01:intron 35.0%
AAGAAAAGAGACTCACGTTA+CGG + Chr3:103088040-103088059 None:intergenic 35.0%
AAGAAGAGTAGATCAAATGG+AGG + Chr3:103087114-103087133 None:intergenic 35.0%
ACAACATTGCGCGAATTATA+GGG + Chr3:103088117-103088136 None:intergenic 35.0%
ACAATCTTCACTTCACAACT+TGG + Chr3:103086293-103086312 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + Chr3:103087038-103087057 None:intergenic 35.0%
AGCACCCATAGTAGAAAATT+TGG + Chr3:103087195-103087214 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + Chr3:103087367-103087386 None:intergenic 35.0%
ATACCATGAAGTTATGGGAA+AGG + Chr3:103088077-103088096 None:intergenic 35.0%
ATATCAATATGACTGCACCA+AGG + Chr3:103087800-103087819 None:intergenic 35.0%
CTCATTACTACTCTATTTCC+TGG - Chr3:103088775-103088794 MsG0380018001.01.T01:CDS 35.0%
GAGTCATACCATGAAGTTAT+GGG + Chr3:103088082-103088101 None:intergenic 35.0%
GCTTTCCACAAAATATCTCT+AGG - Chr3:103087925-103087944 MsG0380018001.01.T01:intron 35.0%
GGAGGTCAAGATACTAATTA+CGG - Chr3:103088443-103088462 MsG0380018001.01.T01:intron 35.0%
TAATTTCTCCATCAATCCCT+GGG + Chr3:103086728-103086747 None:intergenic 35.0%
TACAACATTGCGCGAATTAT+AGG + Chr3:103088118-103088137 None:intergenic 35.0%
TACCATGAAGTTATGGGAAA+GGG + Chr3:103088076-103088095 None:intergenic 35.0%
TACTCTATTTCCTGGCAAAT+TGG - Chr3:103088783-103088802 MsG0380018001.01.T01:CDS 35.0%
TATCAATATGACTGCACCAA+GGG + Chr3:103087799-103087818 None:intergenic 35.0%
TCCCAAGCATAAAACCAAAT+TGG - Chr3:103088010-103088029 MsG0380018001.01.T01:intron 35.0%
TGAGTCATACCATGAAGTTA+TGG + Chr3:103088083-103088102 None:intergenic 35.0%
TGATTGACTACCTCCTAAAT+GGG + Chr3:103086929-103086948 None:intergenic 35.0%
TGGAATGTAACTTCAGCAAA+AGG + Chr3:103087574-103087593 None:intergenic 35.0%
TGGGTCCATAATACAAATGA+CGG + Chr3:103087481-103087500 None:intergenic 35.0%
TTGATCTACTCTTCTTACAG+CGG - Chr3:103087118-103087137 MsG0380018001.01.T01:intron 35.0%
TTGATTGACTACCTCCTAAA+TGG + Chr3:103086930-103086949 None:intergenic 35.0%
TTGGTGCAGTCATATTGATA+TGG - Chr3:103087799-103087818 MsG0380018001.01.T01:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + Chr3:103087380-103087399 None:intergenic 35.0%
! ATTCTTTTCAATGGGAGACT+TGG - Chr3:103088631-103088650 MsG0380018001.01.T01:intron 35.0%
! GACCTCTAAATCTTTTCGAA+TGG - Chr3:103087045-103087064 MsG0380018001.01.T01:intron 35.0%
! GATACTAATTACGGTGGATT+AGG - Chr3:103088452-103088471 MsG0380018001.01.T01:intron 35.0%
! TCTGCAAAAAGCATACATCT+CGG - Chr3:103087704-103087723 MsG0380018001.01.T01:intron 35.0%
! TGCAGGAAAAGTAATTTGCA+AGG - Chr3:103088885-103088904 MsG0380018001.01.T01:intron 35.0%
!! ATCCTGGATAGCTCTAATAT+AGG - Chr3:103087878-103087897 MsG0380018001.01.T01:intron 35.0%
!! TACTAATTACGGTGGATTAG+GGG - Chr3:103088454-103088473 MsG0380018001.01.T01:intron 35.0%
!!! AATTTGGTTTTATGCTTGGG+AGG + Chr3:103088011-103088030 None:intergenic 35.0%
AACAGGTGAAAACAGTAGCT+CGG - Chr3:103088848-103088867 MsG0380018001.01.T01:intron 40.0%
AACCCTTTCCCATAACTTCA+TGG - Chr3:103088071-103088090 MsG0380018001.01.T01:intron 40.0%
AACTTCAGCAAAAGGAGAAG+TGG + Chr3:103087566-103087585 None:intergenic 40.0%
AAGACTTTCCACACTTCGAT+AGG - Chr3:103088251-103088270 MsG0380018001.01.T01:intron 40.0%
AATTGTGTACGACTTAACCC+AGG - Chr3:103086708-103086727 MsG0380018001.01.T01:intron 40.0%
ACAACATACCTATCGAAGTG+TGG + Chr3:103088262-103088281 None:intergenic 40.0%
ACCTCCTTGACTATTATCGT+CGG + Chr3:103088348-103088367 None:intergenic 40.0%
ACTAGTGTGAGGATACAAGA+TGG + Chr3:103087840-103087859 None:intergenic 40.0%
ACTGTTTGGACCATGATCTA+TGG + Chr3:103086458-103086477 None:intergenic 40.0%
ACTTCAGCAAAAGGAGAAGT+GGG + Chr3:103087565-103087584 None:intergenic 40.0%
ACTTCGATAGGTATGTTGTC+CGG - Chr3:103088263-103088282 MsG0380018001.01.T01:intron 40.0%
AGAATGGCCGAGATATAGAA+AGG + Chr3:103089026-103089045 None:intergenic 40.0%
AGACTAGACAGGATAGGATT+AGG + Chr3:103087247-103087266 None:intergenic 40.0%
AGCTATCCAGGATATGTATG+AGG + Chr3:103087871-103087890 None:intergenic 40.0%
ATGGTAAGACTAGACAGGAT+AGG + Chr3:103087253-103087272 None:intergenic 40.0%
ATTGTGTACGACTTAACCCA+GGG - Chr3:103086709-103086728 MsG0380018001.01.T01:intron 40.0%
CACAATTTGTGTCCCATTCA+CGG - Chr3:103086898-103086917 MsG0380018001.01.T01:intron 40.0%
CACGTTACGGATAACCAATT+TGG + Chr3:103088027-103088046 None:intergenic 40.0%
CTAATTTCTCCATCAATCCC+TGG + Chr3:103086729-103086748 None:intergenic 40.0%
CTAGTGTGAGGATACAAGAT+GGG + Chr3:103087839-103087858 None:intergenic 40.0%
CTATCCAGGATATGTATGAG+GGG + Chr3:103087869-103087888 None:intergenic 40.0%
GAACAACTTGTAAGCCATGA+TGG + Chr3:103088499-103088518 None:intergenic 40.0%
GAATAGATTGCCAATTTGCC+AGG + Chr3:103088796-103088815 None:intergenic 40.0%
GAATCCGACGATAATAGTCA+AGG - Chr3:103088341-103088360 MsG0380018001.01.T01:intron 40.0%
GAATGGCCGAGATATAGAAA+GGG + Chr3:103089025-103089044 None:intergenic 40.0%
GATGAATGGTAAGACTAGAC+AGG + Chr3:103087258-103087277 None:intergenic 40.0%
GCTATCCAGGATATGTATGA+GGG + Chr3:103087870-103087889 None:intergenic 40.0%
GGGATTGATGGAGAAATTAG+CGG - Chr3:103086729-103086748 MsG0380018001.01.T01:intron 40.0%
GGTCAAGATACTAATTACGG+TGG - Chr3:103088446-103088465 MsG0380018001.01.T01:intron 40.0%
GTACATCATCGTATTCAGCT+GGG + Chr3:103087442-103087461 None:intergenic 40.0%
TAGAAGCAAGACGGAGTATA+TGG + Chr3:103087594-103087613 None:intergenic 40.0%
TATCCAGGATATGTATGAGG+GGG + Chr3:103087868-103087887 None:intergenic 40.0%
TATCGAAGTGTGGAAAGTCT+TGG + Chr3:103088252-103088271 None:intergenic 40.0%
TGAAAGGATGAGTAATGGCA+AGG + Chr3:103088297-103088316 None:intergenic 40.0%
TGACTATTATCGTCGGATTC+AGG + Chr3:103088341-103088360 None:intergenic 40.0%
TGCCTATATTAGAGCTATCC+AGG + Chr3:103087883-103087902 None:intergenic 40.0%
TGTACATCATCGTATTCAGC+TGG + Chr3:103087443-103087462 None:intergenic 40.0%
TGTGTAGACTCTGTAGAGAA+TGG + Chr3:103089042-103089061 None:intergenic 40.0%
! AGCGTTGAAAGGATGAGTAA+TGG + Chr3:103088302-103088321 None:intergenic 40.0%
! TAATTTGCAAGGAAGCAGAG+AGG - Chr3:103088896-103088915 MsG0380018001.01.T01:intron 40.0%
!! ACTAATTACGGTGGATTAGG+GGG - Chr3:103088455-103088474 MsG0380018001.01.T01:intron 40.0%
!! GAAAGCACTAGAGAAGAAAG+GGG + Chr3:103087911-103087930 None:intergenic 40.0%
!! GGAAAGCACTAGAGAAGAAA+GGG + Chr3:103087912-103087931 None:intergenic 40.0%
!! TGGAAAGCACTAGAGAAGAA+AGG + Chr3:103087913-103087932 None:intergenic 40.0%
!!! TGAGGCTTTTGAAGTTGCAA+TGG - Chr3:103086753-103086772 MsG0380018001.01.T01:intron 40.0%
AAATGGGCAACTCCGTGAAT+GGG + Chr3:103086913-103086932 None:intergenic 45.0%
AACCAGAAGCAGCATGAACA+AGG + Chr3:103086537-103086556 None:intergenic 45.0%
ACACCATTAGAGAGAGAGTG+GGG + Chr3:103087220-103087239 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG + Chr3:103087333-103087352 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + Chr3:103087105-103087124 None:intergenic 45.0%
ATCTCCAACTTTCACCTCCA+AGG - Chr3:103087535-103087554 MsG0380018001.01.T01:intron 45.0%
ATGAGTAATGGCAAGGCAGT+TGG + Chr3:103088290-103088309 None:intergenic 45.0%
ATTCACGGAGTTGCCCATTT+AGG - Chr3:103086913-103086932 MsG0380018001.01.T01:intron 45.0%
CGTGAATGGGACACAAATTG+TGG + Chr3:103086900-103086919 None:intergenic 45.0%
CTTATCGCACAAAACACCTG+AGG - Chr3:103087400-103087419 MsG0380018001.01.T01:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + Chr3:103087221-103087240 None:intergenic 45.0%
GGCACTATTGGTATCAGAGA+AGG + Chr3:103086376-103086395 None:intergenic 45.0%
GTAAAGTAAGCGTAGAGCGT+TGG + Chr3:103087280-103087299 None:intergenic 45.0%
TAAATGGGCAACTCCGTGAA+TGG + Chr3:103086914-103086933 None:intergenic 45.0%
TATGCTTGGGAGGTCGATTA+TGG + Chr3:103088001-103088020 None:intergenic 45.0%
TCCGACGATAATAGTCAAGG+AGG - Chr3:103088344-103088363 MsG0380018001.01.T01:intron 45.0%
TCCGTACCATACAACATTGC+CGG - Chr3:103087329-103087348 MsG0380018001.01.T01:intron 45.0%
TCCTTCTTCAGTGTGCTACA+AGG - Chr3:103089094-103089113 MsG0380018001.01.T01:CDS 45.0%
TCCTTGTAGCACACTGAAGA+AGG + Chr3:103089098-103089117 None:intergenic 45.0%
TCTACCTTGGAGGTGAAAGT+TGG + Chr3:103087542-103087561 None:intergenic 45.0%
TCTTCTTACAGCGGCATCTA+CGG - Chr3:103087127-103087146 MsG0380018001.01.T01:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + Chr3:103087222-103087241 None:intergenic 45.0%
TGAGTAATGGCAAGGCAGTT+GGG + Chr3:103088289-103088308 None:intergenic 45.0%
TGAGTCGAGGAGGAGTTAAA+CGG + Chr3:103087666-103087685 None:intergenic 45.0%
TGGTTGAAATAGAGAGCCTC+AGG + Chr3:103087419-103087438 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG + Chr3:103087325-103087344 None:intergenic 45.0%
TTAAACGGAGGCTAGAGACT+TGG + Chr3:103087651-103087670 None:intergenic 45.0%
TTGAAACAAGCTTCTGCCTC+TGG + Chr3:103088950-103088969 None:intergenic 45.0%
TTGGCGATAGAGGAATTGTG+TGG + Chr3:103088233-103088252 None:intergenic 45.0%
TTTCCAGGAACGATCACAAC+AGG + Chr3:103089158-103089177 None:intergenic 45.0%
! AAACCTGCAGCTGTGGTTTT+GGG - Chr3:103088922-103088941 MsG0380018001.01.T01:intron 45.0%
! ACCAAGCCTTATCCACTAAG+TGG - Chr3:103086958-103086977 MsG0380018001.01.T01:intron 45.0%
! CAAGCCTTATCCACTAAGTG+GGG - Chr3:103086960-103086979 MsG0380018001.01.T01:intron 45.0%
! CCAAGCCTTATCCACTAAGT+GGG - Chr3:103086959-103086978 MsG0380018001.01.T01:intron 45.0%
! GAGAATGCACACACTTTTCC+AGG + Chr3:103089173-103089192 None:intergenic 45.0%
! GAGGCAGAAGCTTGTTTCAA+AGG - Chr3:103088950-103088969 MsG0380018001.01.T01:intron 45.0%
! GCAGATGATGTAGTCTTGCT+TGG + Chr3:103087689-103087708 None:intergenic 45.0%
! GCTTCTTTGATGACAGATGC+TGG - Chr3:103089253-103089272 MsG0380018001.01.T01:five_prime_UTR 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + Chr3:103087324-103087343 None:intergenic 45.0%
! TAAACCTGCAGCTGTGGTTT+TGG - Chr3:103088921-103088940 MsG0380018001.01.T01:intron 45.0%
! TTGTTCATGCTGCTTCTGGT+TGG - Chr3:103086536-103086555 MsG0380018001.01.T01:CDS 45.0%
!! CTAATTACGGTGGATTAGGG+GGG - Chr3:103088456-103088475 MsG0380018001.01.T01:intron 45.0%
!! GAGGTGAAAGAAGCGTTGAA+AGG + Chr3:103088313-103088332 None:intergenic 45.0%
!! TACATCTCGGTGCTAACTCT+TGG - Chr3:103087717-103087736 MsG0380018001.01.T01:intron 45.0%
!! AAAAAAAATAAAAATAAACA+TGG - Chr3:103086860-103086879 MsG0380018001.01.T01:intron 5.0%
AAGCCCCCTCATACATATCC+TGG - Chr3:103087862-103087881 MsG0380018001.01.T01:intron 50.0%
AAGGACTTAGGGTTGACCCT+TGG - Chr3:103087780-103087799 MsG0380018001.01.T01:intron 50.0%
AAGGAGAAGTGGGTCTACCT+TGG + Chr3:103087555-103087574 None:intergenic 50.0%
ACAGTAGCTCGGATAGTGCA+AGG - Chr3:103088859-103088878 MsG0380018001.01.T01:intron 50.0%
ACGAAGAAATGCCAGACGAG+TGG + Chr3:103088182-103088201 None:intergenic 50.0%
ACTCCGTCTTGCTTCTACTC+AGG - Chr3:103087597-103087616 MsG0380018001.01.T01:intron 50.0%
AGAGCTTGAGAGGGAAACAG+GGG - Chr3:103086402-103086421 MsG0380018001.01.T01:CDS 50.0%
AGCACTAGAGAAGAAAGGGG+AGG + Chr3:103087908-103087927 None:intergenic 50.0%
AGCAGCATGAACAAGGTGGA+TGG + Chr3:103086530-103086549 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG + Chr3:103086973-103086992 None:intergenic 50.0%
CACCATTAGAGAGAGAGTGG+GGG + Chr3:103087219-103087238 None:intergenic 50.0%
CAGAAGCAGCATGAACAAGG+TGG + Chr3:103086534-103086553 None:intergenic 50.0%
CAGAGCTTGAGAGGGAAACA+GGG - Chr3:103086401-103086420 MsG0380018001.01.T01:CDS 50.0%
CATCATCGTATTCAGCTGGG+TGG + Chr3:103087439-103087458 None:intergenic 50.0%
CGACTTAACCCAGGGATTGA+TGG - Chr3:103086717-103086736 MsG0380018001.01.T01:intron 50.0%
CTTCTTACAGCGGCATCTAC+GGG - Chr3:103087128-103087147 MsG0380018001.01.T01:intron 50.0%
GAGGATTAAACCTGCAGCTG+TGG - Chr3:103088915-103088934 MsG0380018001.01.T01:intron 50.0%
GATGGAGAAATTAGCGGCTG+AGG - Chr3:103086735-103086754 MsG0380018001.01.T01:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG + Chr3:103087338-103087357 None:intergenic 50.0%
GTGGAAAGTCTTGGCGATAG+AGG + Chr3:103088243-103088262 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG - Chr3:103088978-103088997 MsG0380018001.01.T01:CDS 50.0%
TACCCCCACTCTCTCTCTAA+TGG - Chr3:103087214-103087233 MsG0380018001.01.T01:intron 50.0%
! AGTGTGCTACAAGGAAGCGT+CGG - Chr3:103089103-103089122 MsG0380018001.01.T01:CDS 50.0%
! CACCTTGTTCATGCTGCTTC+TGG - Chr3:103086532-103086551 MsG0380018001.01.T01:intron 50.0%
! CATGCTGCTTCTGGTTGGTT+GGG - Chr3:103086541-103086560 MsG0380018001.01.T01:CDS 50.0%
! CCCACTTAGTGGATAAGGCT+TGG + Chr3:103086962-103086981 None:intergenic 50.0%
! CTGACCCCACTTAGTGGATA+AGG + Chr3:103086967-103086986 None:intergenic 50.0%
! TAGTCTTGCTTGGTGAGTCG+AGG + Chr3:103087679-103087698 None:intergenic 50.0%
! TCATGCTGCTTCTGGTTGGT+TGG - Chr3:103086540-103086559 MsG0380018001.01.T01:CDS 50.0%
!! AACCTGCAGCTGTGGTTTTG+GGG - Chr3:103088923-103088942 MsG0380018001.01.T01:intron 50.0%
!! AGCGTAGAGCGTTGGATGAA+TGG + Chr3:103087272-103087291 None:intergenic 50.0%
!! CAACAGGTGCTGCTTTACAG+TGG + Chr3:103089142-103089161 None:intergenic 50.0%
AACGGAGGCTAGAGACTTGG+AGG + Chr3:103087648-103087667 None:intergenic 55.0%
AGGGGAGAGGAGAAGAGGAA+GGG - Chr3:103086420-103086439 MsG0380018001.01.T01:CDS 55.0%
CACGGAGTTGCCCATTTAGG+AGG - Chr3:103086916-103086935 MsG0380018001.01.T01:intron 55.0%
CCAGAGCTTGAGAGGGAAAC+AGG - Chr3:103086400-103086419 MsG0380018001.01.T01:CDS 55.0%
CCGCCTGAGTAGAAGCAAGA+CGG + Chr3:103087603-103087622 None:intergenic 55.0%
CCGTCTTGCTTCTACTCAGG+CGG - Chr3:103087600-103087619 MsG0380018001.01.T01:intron 55.0%
CCTGTTTCCCTCTCAAGCTC+TGG + Chr3:103086403-103086422 None:intergenic 55.0%
CGGATAGTGCAAGGTGATGC+AGG - Chr3:103088868-103088887 MsG0380018001.01.T01:intron 55.0%
CGTGTGTGTGTGTGTGTGTG+TGG - Chr3:103088977-103088996 MsG0380018001.01.T01:CDS 55.0%
CTATCGGACAGCAGTCAGAC+CGG + Chr3:103087351-103087370 None:intergenic 55.0%
GAAACAGGGGAGAGGAGAAG+AGG - Chr3:103086415-103086434 MsG0380018001.01.T01:CDS 55.0%
GAGAAGTGGGTCTACCTTGG+AGG + Chr3:103087552-103087571 None:intergenic 55.0%
GCACCTGTTGTGATCGTTCC+TGG - Chr3:103089152-103089171 MsG0380018001.01.T01:CDS 55.0%
GTCGAGGAGGAGTTAAACGG+AGG + Chr3:103087663-103087682 None:intergenic 55.0%
GTGCTTCTTCTCCACTCGTC+TGG - Chr3:103088168-103088187 MsG0380018001.01.T01:intron 55.0%
TAATGGCAAGGCAGTTGGGC+CGG + Chr3:103088285-103088304 None:intergenic 55.0%
TTGAGAGGGAAACAGGGGAG+AGG - Chr3:103086407-103086426 MsG0380018001.01.T01:CDS 55.0%
! AGCTCTGGCTCAGGCACTAT+TGG + Chr3:103086388-103086407 None:intergenic 55.0%
! GAGGCAAGCCTTAGAAGCGT+AGG + Chr3:103087629-103087648 None:intergenic 55.0%
! TCTTGCTTGGTGAGTCGAGG+AGG + Chr3:103087676-103087695 None:intergenic 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + Chr3:103087321-103087340 None:intergenic 55.0%
AGGGGGCTTCGACTAGTGTG+AGG + Chr3:103087851-103087870 None:intergenic 60.0%
CAGGGGAGAGGAGAAGAGGA+AGG - Chr3:103086419-103086438 MsG0380018001.01.T01:CDS 60.0%
GCCTGAGCCAGAGCTTGAGA+GGG - Chr3:103086393-103086412 MsG0380018001.01.T01:CDS 60.0%
GGCGGAAGCCTACGCTTCTA+AGG - Chr3:103087618-103087637 MsG0380018001.01.T01:intron 60.0%
GTCCCCAAAACCACAGCTGC+AGG + Chr3:103088928-103088947 None:intergenic 60.0%
TGCCTGAGCCAGAGCTTGAG+AGG - Chr3:103086392-103086411 MsG0380018001.01.T01:CDS 60.0%
! TCCCTCTCAAGCTCTGGCTC+AGG + Chr3:103086397-103086416 None:intergenic 60.0%
! TCGTCGGATTCAGGAGCACG+AGG + Chr3:103088332-103088351 None:intergenic 60.0%
!! CGGAGTGTTGGGCGGTTAAG+AGG + Chr3:103087313-103087332 None:intergenic 60.0%
!!! GCTGTGGTTTTGGGGACCAG+AGG - Chr3:103088931-103088950 MsG0380018001.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 103086212 103089294 103086212 ID=MsG0380018001.01;Name=MsG0380018001.01
Chr3 mRNA 103086212 103089294 103086212 ID=MsG0380018001.01.T01;Parent=MsG0380018001.01;Name=MsG0380018001.01.T01;_AED=0.49;_eAED=0.53;_QI=107|0.5|0.6|1|0.5|0.6|5|0|202
Chr3 exon 103086212 103086257 103086212 ID=MsG0380018001.01.T01:exon:35983;Parent=MsG0380018001.01.T01
Chr3 exon 103086326 103086454 103086326 ID=MsG0380018001.01.T01:exon:35982;Parent=MsG0380018001.01.T01
Chr3 exon 103086535 103086653 103086535 ID=MsG0380018001.01.T01:exon:35981;Parent=MsG0380018001.01.T01
Chr3 exon 103088732 103088811 103088732 ID=MsG0380018001.01.T01:exon:35980;Parent=MsG0380018001.01.T01
Chr3 exon 103088953 103089294 103088953 ID=MsG0380018001.01.T01:exon:35979;Parent=MsG0380018001.01.T01
Chr3 five_prime_UTR 103089188 103089294 103089188 ID=MsG0380018001.01.T01:five_prime_utr;Parent=MsG0380018001.01.T01
Chr3 CDS 103088953 103089187 103088953 ID=MsG0380018001.01.T01:cds;Parent=MsG0380018001.01.T01
Chr3 CDS 103088732 103088811 103088732 ID=MsG0380018001.01.T01:cds;Parent=MsG0380018001.01.T01
Chr3 CDS 103086535 103086653 103086535 ID=MsG0380018001.01.T01:cds;Parent=MsG0380018001.01.T01
Chr3 CDS 103086326 103086454 103086326 ID=MsG0380018001.01.T01:cds;Parent=MsG0380018001.01.T01
Chr3 CDS 103086212 103086257 103086212 ID=MsG0380018001.01.T01:cds;Parent=MsG0380018001.01.T01
Gene Sequence

>MsG0380018001.01.T01

ATGGAGACAGTGATGGAAGATGTAGAAGAATACAACTACAGAGAAGTGAAGCTTCCTTCTCTGATACCAATAGTGCCTGAGCCAGAGCTTGAGAGGGAAACAGGGGAGAGGAGAAGAGGAAGGGATATAGTATTAGCCATAGATCATGGTCCAAACAGTAAACATGCTTTTGATTGGGCTCTTATTCATCTATGCAGACTTGCTGATACCATCCACCTTGTTCATGCTGCTTCTGATGTGAAGAATCAAATTGTGTACGACTTAACCCAGGGATTGATGGAGAAATTAGCGGCTGAGGCTTTTGAAGTTGCAATGGTGAAAACAGTAGCTCGGATAGTGCAAGGTGATGCAGGAAAAGTAATTTGCAAGGAAGCAGAGAGGATTAAACCTGCAGCTGTGGTTTTGGGGACCAGAGGCAGAAGCTTGTTTCAAAGAGTCTACACACTGCAGTTATCCATTATTTGTATATGTTTTTTTCCTTCTTCAGTGTGCTACAAGGAAGCGTCGGTGAGTTGCTTTCACCACTGTAAAGCAGCACCTGTTGTGATCGTTCCTGGAAAAGTTTTCGCTTCTTTGATGACAGATGCTGGTGATGCATCAATCGTCTAA

Protein sequence

>MsG0380018001.01.T01

METVMEDVEEYNYREVKLPSLIPIVPEPELERETGERRRGRDIVLAIDHGPNSKHAFDWALIHLCRLADTIHLVHAASDVKNQIVYDLTQGLMEKLAAEAFEVAMVKTVARIVQGDAGKVICKEAERIKPAAVVLGTRGRSLFQRVYTLQLSIICICFFPSSVCYKEASVSCFHHCKAAPVVIVPGKVFASLMTDAGDASIV*