AlfalfaGEDB | MsG0080048311.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048311.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048311.01.T01	KEH36453.1	78.095	105	16	2	1	105	1	98	1.16E-22	94.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048311.01.T01	A0A072V541	78.095	105	16	2	1	105	1	98	5.55e-23	94.7

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048311.01	MsG0080048781.01	0.879049	1.710836e-69	9.140211e-66
MsG0080048311.01	MsG0080049140.01	0.849416	3.278527e-60	6.210524e-57
MsG0080048311.01	MsG0180000111.01	0.821394	4.134076e-53	3.359181e-50
MsG0080048311.01	MsG0180002421.01	0.852566	4.243596e-61	8.903394e-58
MsG0080048311.01	MsG0180003427.01	0.809426	1.903724e-50	1.117393e-47
MsG0080048311.01	MsG0180003485.01	0.822297	2.554638e-53	2.129708e-50
MsG0080048311.01	MsG0180003658.01	0.815549	8.732365e-52	6.038934e-49
MsG0080048311.01	MsG0180003796.01	0.835554	1.568405e-56	1.924501e-53
MsG0080048311.01	MsG0180004126.01	0.814509	1.485870e-51	9.989806e-49
MsG0080048311.01	MsG0180005435.01	0.808181	3.514138e-50	1.995844e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048311.01.T01	MTR_2g009275	78.095	105	16	2	1	105	1	98	1.41e-26	94.7
MsG0080048311.01.T01	MTR_2g009150	46.667	105	41	4	1	104	1	91	8.21e-16	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 33 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAGAGACGGCACTGGAAGC+AGG	0.508633	contig271end:+136013	MsG0080048310.01.T01:CDS
ACAGCCGGTGAAGTAGCGGA+TGG	0.678585	contig271end:+136079	MsG0080048310.01.T01:CDS
ACGGCACTGGAAGCAGGTCC+TGG	0.494599	contig271end:+136019	MsG0080048310.01.T01:CDS
AGAGACAGCCGGTGAAGTAG+CGG	0.584069	contig271end:+136075	MsG0080048310.01.T01:CDS
AGCAGCAACAGAGACGGCAC+TGG	0.519764	contig271end:+136006	MsG0080048310.01.T01:CDS
AGCAGTAGCAGCAACAGAGA+CGG	0.613692	contig271end:+136000	MsG0080048310.01.T01:CDS
AGGAGAAGACGCCGGTGATG+GGG	0.563301	contig271end:+136126	MsG0080048310.01.T01:CDS
ATGGAAGAAGGAGAGACAGC+CGG	0.582727	contig271end:+136064	MsG0080048310.01.T01:CDS
CAACCAAATCACAGTCGCCA+AGG	0.590381	contig271end:-136159	MsG0080048311.01.T01:CDS
CAGGAGAAGACGCCGGTGAT+GGG	0.475687	contig271end:+136125	MsG0080048310.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAACATTGCTCTTATGATTG+TGG	-	contig271end:135972-135991	MsG0080048311.01.T01:CDS	35.0%
GTTGTTGAGCACTACAACAA+TGG	-	contig271end:136002-136021	MsG0080048311.01.T01:CDS	40.0%
TACAACAATGGCTCAATCTC+CGG	-	contig271end:136014-136033	MsG0080048311.01.T01:CDS	40.0%
TTCAGGAGGAGAATTTCCAG+TGG	+	contig271end:136106-136125	MsG0080048310.01.T01:CDS	45.0%
TTTCCTTGGCGACTGTGATT+TGG	+	contig271end:136052-136071	MsG0080048310.01.T01:CDS	45.0%
AGCAGTAGCAGCAACAGAGA+CGG	+	contig271end:136208-136227	None:intergenic	50.0%
ATGGAAGAAGGAGAGACAGC+CGG	+	contig271end:136144-136163	MsG0080048310.01.T01:CDS	50.0%
CAACCAAATCACAGTCGCCA+AGG	-	contig271end:136046-136065	MsG0080048311.01.T01:CDS	50.0%
GAAAGCAATCTCCCCATCAC+CGG	-	contig271end:136068-136087	MsG0080048311.01.T01:CDS	50.0%
GATGGGGAGATTGCTTTCCT+TGG	+	contig271end:136066-136085	MsG0080048310.01.T01:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
contig271end	gene	135955	136272	135955	ID=MsG0080048311.01;Name=MsG0080048311.01
contig271end	mRNA	135955	136272	135955	ID=MsG0080048311.01.T01;Parent=MsG0080048311.01;Name=MsG0080048311.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|105
contig271end	exon	135955	136272	135955	ID=MsG0080048311.01.T01:exon:2851;Parent=MsG0080048311.01.T01
contig271end	CDS	135955	136272	135955	ID=MsG0080048311.01.T01:cds;Parent=MsG0080048311.01.T01

Gene Sequence	>MsG0080048311.01.T01 ATGGGTCGCTTCAACTTGAACATTGCTCTTATGATTGTGGCTGCATTGTTGTTGAGCACTACAACAATGGCTCAATCTCCGGCTTCATCGCCAACCAAATCACAGTCGCCAAGGAAAGCAATCTCCCCATCACCGGCGTCTTCTCCTGCCACTGGAAATTCTCCTCCTGAACCATCCGCTACTTCACCGGCTGTCTCTCCTTCTTCCATCTCTGGTCCACCATCTGAAGCACCAGGACCTGCTTCCAGTGCCGTCTCTGTTGCTGCTACTGCTGGATCTGCTGCTATTGTCATTTTCGTAGCGGCTTTCATCATGTAG
Protein sequence	>MsG0080048311.01.T01 MGRFNLNIALMIVAALLLSTTTMAQSPASSPTKSQSPRKAISPSPASSPATGNSPPEPSATSPAVSPSSISGPPSEAPGPASSAVSVAATAGSAAIVIFVAAFIM*