Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006477.01.T01 | KEH36453.1 | 77.143 | 105 | 17 | 2 | 1 | 105 | 1 | 98 | 4.04E-22 | 93.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006477.01.T01 | A0A072V541 | 77.143 | 105 | 17 | 2 | 1 | 105 | 1 | 98 | 1.93e-22 | 93.2 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080047814.01 | MsG0280006477.01 | 0.813801 | 2.129405e-51 | 1.404366e-48 |
MsG0080048311.01 | MsG0280006477.01 | 0.932488 | 7.900447e-95 | 5.308303e-90 |
MsG0080048781.01 | MsG0280006477.01 | 0.848356 | 6.458579e-60 | 1.182074e-56 |
MsG0080049140.01 | MsG0280006477.01 | 0.872831 | 2.349425e-67 | 9.973236e-64 |
MsG0180000348.01 | MsG0280006477.01 | 0.810126 | 1.345791e-50 | 8.046037e-48 |
MsG0180002421.01 | MsG0280006477.01 | 0.861952 | 7.145491e-64 | 2.057319e-60 |
MsG0180003796.01 | MsG0280006477.01 | 0.823479 | 1.355219e-53 | 1.168222e-50 |
MsG0180004099.01 | MsG0280006477.01 | 0.822654 | 2.110678e-53 | 1.777616e-50 |
MsG0180004126.01 | MsG0280006477.01 | 0.818131 | 2.300448e-52 | 1.707440e-49 |
MsG0180004754.01 | MsG0280006477.01 | 0.825819 | 3.806537e-54 | 3.507601e-51 |
MsG0180005021.01 | MsG0280006477.01 | 0.815817 | 7.613183e-52 | 5.303617e-49 |
MsG0180005022.01 | MsG0280006477.01 | 0.814100 | 1.829579e-51 | 1.216404e-48 |
MsG0180005025.01 | MsG0280006477.01 | 0.816589 | 5.115401e-52 | 3.639684e-49 |
MsG0180005435.01 | MsG0280006477.01 | 0.813039 | 3.130999e-51 | 2.022626e-48 |
MsG0180006000.01 | MsG0280006477.01 | 0.805324 | 1.410342e-49 | 7.439556e-47 |
MsG0180006026.01 | MsG0280006477.01 | 0.808957 | 2.399569e-50 | 1.390806e-47 |
MsG0280006477.01 | MsG0280006540.01 | 0.807221 | 5.618358e-50 | 3.111816e-47 |
MsG0280006477.01 | MsG0280007359.01 | 0.801104 | 1.053665e-48 | 4.990073e-46 |
MsG0280006477.01 | MsG0280007983.01 | 0.803680 | 3.105295e-49 | 1.570184e-46 |
MsG0280006477.01 | MsG0280008614.01 | 0.805882 | 1.077225e-49 | 5.764548e-47 |
MsG0280006477.01 | MsG0280009514.01 | 0.802043 | 6.766317e-49 | 3.281215e-46 |
MsG0280006477.01 | MsG0280009752.01 | 0.817986 | 2.480094e-52 | 1.833453e-49 |
MsG0280006477.01 | MsG0280009794.01 | 0.802244 | 6.150770e-49 | 2.998149e-46 |
MsG0280006477.01 | MsG0280010779.01 | 0.849187 | 3.798300e-60 | 7.143774e-57 |
MsG0280006477.01 | MsG0280010795.01 | 0.800986 | 1.114090e-48 | 5.260587e-46 |
MsG0280006477.01 | MsG0280010977.01 | 0.824756 | 6.794124e-54 | 6.073950e-51 |
MsG0280006477.01 | MsG0280011014.01 | 0.800127 | 1.667226e-48 | 7.702103e-46 |
MsG0280006477.01 | MsG0280011154.01 | 0.839688 | 1.364173e-57 | 1.898275e-54 |
MsG0280006477.01 | MsG0280011282.01 | 0.817862 | 2.646245e-52 | 1.949662e-49 |
MsG0280006477.01 | MsG0380012522.01 | 0.804681 | 1.922034e-49 | 9.972598e-47 |
MsG0280006477.01 | MsG0380014754.01 | 0.804603 | 1.995996e-49 | 1.033514e-46 |
MsG0280006477.01 | MsG0380014808.01 | 0.818825 | 1.601559e-52 | 1.211689e-49 |
MsG0280006477.01 | MsG0380015548.01 | 0.882377 | 1.096814e-70 | 6.664681e-67 |
MsG0280006477.01 | MsG0380015816.01 | 0.814898 | 1.218555e-51 | 8.278060e-49 |
MsG0280006477.01 | MsG0380016140.01 | 0.809534 | 1.804253e-50 | 1.062061e-47 |
MsG0280006477.01 | MsG0380016703.01 | 0.848771 | 4.957461e-60 | 9.196538e-57 |
MsG0280006477.01 | MsG0380016994.01 | 0.862775 | 3.990462e-64 | 1.182600e-60 |
MsG0280006477.01 | MsG0380017024.01 | 0.804208 | 2.412462e-49 | 1.236498e-46 |
MsG0280006477.01 | MsG0380017159.01 | 0.843172 | 1.649596e-58 | 2.559110e-55 |
MsG0280006477.01 | MsG0380017240.01 | 0.822765 | 1.988668e-53 | 1.680161e-50 |
MsG0280006477.01 | MsG0380017361.01 | 0.831687 | 1.449782e-55 | 1.585002e-52 |
MsG0280006477.01 | MsG0480018230.01 | 0.833489 | 5.180028e-56 | 5.974510e-53 |
MsG0280006477.01 | MsG0480018397.01 | 0.834317 | 3.213748e-56 | 3.800422e-53 |
MsG0280006477.01 | MsG0480018526.01 | 0.824957 | 6.091406e-54 | 5.476993e-51 |
MsG0280006477.01 | MsG0480018918.01 | 0.804513 | 2.084230e-49 | 1.076647e-46 |
MsG0280006477.01 | MsG0480018919.01 | 0.835032 | 2.124170e-56 | 2.565939e-53 |
MsG0280006477.01 | MsG0480019635.01 | 0.840353 | 9.153767e-58 | 1.300405e-54 |
MsG0280006477.01 | MsG0480020965.01 | 0.801033 | 1.089609e-48 | 5.151029e-46 |
MsG0280006477.01 | MsG0480021013.01 | 0.812804 | 3.525606e-51 | 2.263147e-48 |
MsG0280006477.01 | MsG0480021156.01 | 0.807651 | 4.555050e-50 | 2.551102e-47 |
MsG0280006477.01 | MsG0480021225.01 | 0.825602 | 4.287443e-54 | 3.926286e-51 |
MsG0280006477.01 | MsG0480022325.01 | 0.841283 | 5.220654e-58 | 7.633406e-55 |
MsG0280006477.01 | MsG0480022331.01 | 0.832479 | 9.236418e-56 | 1.033622e-52 |
MsG0280006477.01 | MsG0480022620.01 | 0.816360 | 5.755875e-52 | 4.069943e-49 |
MsG0280006477.01 | MsG0480023262.01 | 0.838110 | 3.493583e-57 | 4.632540e-54 |
MsG0280006477.01 | MsG0480023296.01 | 0.832211 | 1.075867e-55 | 1.194386e-52 |
MsG0280006477.01 | MsG0480023620.01 | 0.811176 | 7.981798e-51 | 4.906633e-48 |
MsG0280006477.01 | MsG0480023672.01 | 0.828887 | 7.003018e-55 | 7.051535e-52 |
MsG0280006477.01 | MsG0580024109.01 | 0.841464 | 4.677963e-58 | 6.879635e-55 |
MsG0280006477.01 | MsG0580024330.01 | 0.804748 | 1.861582e-49 | 9.676152e-47 |
MsG0280006477.01 | MsG0580024478.01 | 0.812892 | 3.372867e-51 | 2.170302e-48 |
MsG0280006477.01 | MsG0580024489.01 | 0.862613 | 4.477136e-64 | 1.319090e-60 |
MsG0280006477.01 | MsG0580024798.01 | 0.813832 | 2.096509e-51 | 1.383778e-48 |
MsG0280006477.01 | MsG0580024813.01 | 0.805953 | 1.040853e-49 | 5.580057e-47 |
MsG0280006477.01 | MsG0580025093.01 | 0.811987 | 5.318725e-51 | 3.340607e-48 |
MsG0280006477.01 | MsG0580025352.01 | 0.800970 | 1.122732e-48 | 5.299042e-46 |
MsG0280006477.01 | MsG0580025614.01 | 0.824738 | 6.857975e-54 | 6.127899e-51 |
MsG0280006477.01 | MsG0580025766.01 | 0.815260 | 1.012498e-51 | 6.946378e-49 |
MsG0280006477.01 | MsG0580025822.01 | 0.812353 | 4.425714e-51 | 2.807605e-48 |
MsG0280006477.01 | MsG0580026059.01 | 0.830907 | 2.254799e-55 | 2.408707e-52 |
MsG0280006477.01 | MsG0580026186.01 | 0.824939 | 6.150396e-54 | 5.527219e-51 |
MsG0280006477.01 | MsG0580026593.01 | 0.821165 | 4.668488e-53 | 3.769333e-50 |
MsG0280006477.01 | MsG0580028060.01 | 0.823436 | 1.386817e-53 | 1.193968e-50 |
MsG0280006477.01 | MsG0580028756.01 | 0.833545 | 5.013598e-56 | 5.792608e-53 |
MsG0280006477.01 | MsG0580029261.01 | 0.808945 | 2.413090e-50 | 1.398202e-47 |
MsG0280006477.01 | MsG0580029298.01 | 0.837491 | 5.037804e-57 | 6.554939e-54 |
MsG0280006477.01 | MsG0680030865.01 | 0.812823 | 3.491609e-51 | 2.242497e-48 |
MsG0280006477.01 | MsG0680031384.01 | 0.836539 | 8.819251e-57 | 1.114745e-53 |
MsG0280006477.01 | MsG0680031386.01 | 0.830013 | 3.728699e-55 | 3.880473e-52 |
MsG0280006477.01 | MsG0680031616.01 | 0.819903 | 9.092921e-53 | 7.088848e-50 |
MsG0280006477.01 | MsG0780036752.01 | 0.830823 | 2.363086e-55 | 2.518193e-52 |
MsG0280006477.01 | MsG0780040364.01 | 0.815163 | 1.063981e-51 | 7.280202e-49 |
MsG0280006477.01 | MsG0780040482.01 | 0.803527 | 3.340989e-49 | 1.682853e-46 |
MsG0280006477.01 | MsG0780040543.01 | 0.839646 | 1.399081e-57 | 1.944431e-54 |
MsG0280006477.01 | MsG0780041063.01 | 0.858167 | 9.920648e-63 | 2.509042e-59 |
MsG0280006477.01 | MsG0780041141.01 | 0.804259 | 2.353471e-49 | 1.207853e-46 |
MsG0280006477.01 | MsG0780041143.01 | 0.838615 | 2.588115e-57 | 3.485434e-54 |
MsG0280006477.01 | MsG0880042836.01 | 0.843132 | 1.690924e-58 | 2.619872e-55 |
MsG0280006477.01 | MsG0880043516.01 | 0.832507 | 9.089254e-56 | 1.018025e-52 |
MsG0280006477.01 | MsG0880045552.01 | 0.883756 | 3.425532e-71 | 2.200337e-67 |
MsG0280006477.01 | MsG0880046086.01 | 0.801045 | 1.083518e-48 | 5.123831e-46 |
MsG0280006477.01 | MsG0880046885.01 | 0.806486 | 8.037363e-50 | 4.367767e-47 |
MsG0280006477.01 | MsG0880047226.01 | 0.837956 | 3.827769e-57 | 5.052409e-54 |
MsG0280006477.01 | MsG0880047466.01 | 0.805319 | 1.413775e-49 | 7.456749e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280006477.01.T01 | MTR_2g009275 | 77.143 | 105 | 17 | 2 | 1 | 105 | 1 | 98 | 4.89e-26 | 93.2 |
MsG0280006477.01.T01 | MTR_2g009150 | 45.714 | 105 | 42 | 4 | 1 | 104 | 1 | 91 | 2.91e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 33 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCTCTGTTGCTGCTACTGC+TGG | 0.364799 | 2:+2536665 | MsG0280006477.01.T01:CDS |
GTCTCTCCTTCTTCCATCTC+TGG | 0.367654 | 2:+2536605 | MsG0280006477.01.T01:CDS |
TTTCCTTGGCGACTGTGATT+TGG | 0.378125 | 2:-2536507 | MsG0280006478.01.T01:CDS |
GGTGAAGTAGCGGATGGTTC+AGG | 0.402991 | 2:-2536578 | MsG0280006478.01.T01:CDS |
GTTGTTGAGTTCTACAACAA+TGG | 0.418465 | 2:+2536460 | MsG0280006477.01.T01:CDS |
TACAACAATGGCTCAATCTC+CGG | 0.448075 | 2:+2536472 | MsG0280006477.01.T01:CDS |
GGAGGAGAATTTCCAGTGGC+AGG | 0.448322 | 2:-2536557 | MsG0280006478.01.T01:CDS |
GATGGGGAGATTGCTTTCCT+TGG | 0.456249 | 2:-2536521 | MsG0280006478.01.T01:CDS |
CAGGAGAAGACGCCGGTGAT+GGG | 0.475687 | 2:-2536538 | MsG0280006478.01.T01:CDS |
GCAGGAGAAGACGCCGGTGA+TGG | 0.484603 | 2:-2536539 | MsG0280006478.01.T01:CDS |
ACGGCACTGGAAGCAGGTCC+TGG | 0.494599 | 2:-2536644 | MsG0280006478.01.T01:CDS |
GAACATTGCTCTTATGATTG+TGG | 0.500197 | 2:+2536430 | MsG0280006477.01.T01:CDS |
ACAGAGACGGCACTGGAAGC+AGG | 0.508633 | 2:-2536650 | MsG0280006478.01.T01:CDS |
GGTCCTGGTGCTTCAGATGG+TGG | 0.509452 | 2:-2536629 | MsG0280006478.01.T01:CDS |
AGCAGCAACAGAGACGGCAC+TGG | 0.519764 | 2:-2536657 | MsG0280006478.01.T01:CDS |
CCGGCGTCTTCTCCTGCCAC+TGG | 0.519854 | 2:+2536545 | MsG0280006477.01.T01:CDS |
GCAGGTCCTGGTGCTTCAGA+TGG | 0.523119 | 2:-2536632 | MsG0280006478.01.T01:CDS |
CTTGGCGACTGTGATTTGGT+TGG | 0.533471 | 2:-2536503 | MsG0280006478.01.T01:CDS |
GGTGGACCAGAGATGGAAGA+AGG | 0.548296 | 2:-2536611 | MsG0280006478.01.T01:CDS |
AGGAGAAGACGCCGGTGATG+GGG | 0.563301 | 2:-2536537 | MsG0280006478.01.T01:CDS |
GAAAGCAATCTCCCCATCAC+CGG | 0.563344 | 2:+2536526 | MsG0280006477.01.T01:CDS |
TGAACCATCCGCTACTTCAC+CGG | 0.570119 | 2:+2536580 | MsG0280006477.01.T01:CDS |
TTCAGATGGTGGACCAGAGA+TGG | 0.580542 | 2:-2536618 | MsG0280006478.01.T01:CDS |
ATGGAAGAAGGAGAGACAGC+CGG | 0.582727 | 2:-2536599 | MsG0280006478.01.T01:CDS |
AGAGACAGCCGGTGAAGTAG+CGG | 0.584069 | 2:-2536588 | MsG0280006478.01.T01:CDS |
CAACCAAATCACAGTCGCCA+AGG | 0.590381 | 2:+2536504 | MsG0280006477.01.T01:CDS |
GATTTGGTTGGCGATGAAGC+CGG | 0.598616 | 2:-2536491 | MsG0280006478.01.T01:CDS |
GGTCCACCATCTGAAGCACC+AGG | 0.613375 | 2:+2536626 | MsG0280006477.01.T01:CDS |
AGCAGTAGCAGCAACAGAGA+CGG | 0.613692 | 2:-2536663 | MsG0280006478.01.T01:CDS |
GAAGTAGCGGATGGTTCAGG+AGG | 0.667793 | 2:-2536575 | MsG0280006478.01.T01:CDS |
ACAGCCGGTGAAGTAGCGGA+TGG | 0.678585 | 2:-2536584 | MsG0280006478.01.T01:CDS |
TTCAGGAGGAGAATTTCCAG+TGG | 0.715472 | 2:-2536561 | MsG0280006478.01.T01:CDS |
CCAGTGGCAGGAGAAGACGC+CGG | 0.748622 | 2:-2536545 | MsG0280006478.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
GAACATTGCTCTTATGATTG+TGG | + | Chr2:2536430-2536449 | MsG0280006477.01.T01:CDS | 35.0% | |
GTTGTTGAGTTCTACAACAA+TGG | + | Chr2:2536460-2536479 | MsG0280006477.01.T01:CDS | 35.0% | |
!!! | TGCTATTGTCATTTTCGTAG+CGG | + | Chr2:2536694-2536713 | MsG0280006477.01.T01:CDS | 35.0% |
TACAACAATGGCTCAATCTC+CGG | + | Chr2:2536472-2536491 | MsG0280006477.01.T01:CDS | 40.0% | |
TTCAGGAGGAGAATTTCCAG+TGG | - | Chr2:2536564-2536583 | MsG0280006478.01.T01:CDS | 45.0% | |
TTTCCTTGGCGACTGTGATT+TGG | - | Chr2:2536510-2536529 | MsG0280006478.01.T01:CDS | 45.0% | |
AGCAGTAGCAGCAACAGAGA+CGG | - | Chr2:2536666-2536685 | MsG0280006478.01.T01:CDS | 50.0% | |
ATGGAAGAAGGAGAGACAGC+CGG | - | Chr2:2536602-2536621 | MsG0280006478.01.T01:CDS | 50.0% | |
CAACCAAATCACAGTCGCCA+AGG | + | Chr2:2536504-2536523 | MsG0280006477.01.T01:CDS | 50.0% | |
GAAAGCAATCTCCCCATCAC+CGG | + | Chr2:2536526-2536545 | MsG0280006477.01.T01:CDS | 50.0% | |
GATGGGGAGATTGCTTTCCT+TGG | - | Chr2:2536524-2536543 | MsG0280006478.01.T01:CDS | 50.0% | |
GTCTCTCCTTCTTCCATCTC+TGG | + | Chr2:2536605-2536624 | MsG0280006477.01.T01:CDS | 50.0% | |
TGAACCATCCGCTACTTCAC+CGG | + | Chr2:2536580-2536599 | MsG0280006477.01.T01:CDS | 50.0% | |
! | GATTTGGTTGGCGATGAAGC+CGG | - | Chr2:2536494-2536513 | MsG0280006478.01.T01:CDS | 50.0% |
!! | CTTGGCGACTGTGATTTGGT+TGG | - | Chr2:2536506-2536525 | MsG0280006478.01.T01:CDS | 50.0% |
!! | TTCAGATGGTGGACCAGAGA+TGG | - | Chr2:2536621-2536640 | MsG0280006478.01.T01:CDS | 50.0% |
AGAGACAGCCGGTGAAGTAG+CGG | - | Chr2:2536591-2536610 | MsG0280006478.01.T01:CDS | 55.0% | |
GGAGGAGAATTTCCAGTGGC+AGG | - | Chr2:2536560-2536579 | MsG0280006478.01.T01:CDS | 55.0% | |
GGTGGACCAGAGATGGAAGA+AGG | - | Chr2:2536614-2536633 | MsG0280006478.01.T01:CDS | 55.0% | |
GTCTCTGTTGCTGCTACTGC+TGG | + | Chr2:2536665-2536684 | MsG0280006477.01.T01:CDS | 55.0% | |
!! | GAAGTAGCGGATGGTTCAGG+AGG | - | Chr2:2536578-2536597 | MsG0280006478.01.T01:CDS | 55.0% |
!! | GGTGAAGTAGCGGATGGTTC+AGG | - | Chr2:2536581-2536600 | MsG0280006478.01.T01:CDS | 55.0% |
AGCAGCAACAGAGACGGCAC+TGG | - | Chr2:2536660-2536679 | MsG0280006478.01.T01:CDS | 60.0% | |
AGGAGAAGACGCCGGTGATG+GGG | - | Chr2:2536540-2536559 | MsG0280006478.01.T01:CDS | 60.0% | |
CAGGAGAAGACGCCGGTGAT+GGG | - | Chr2:2536541-2536560 | MsG0280006478.01.T01:CDS | 60.0% | |
GCAGGTCCTGGTGCTTCAGA+TGG | - | Chr2:2536635-2536654 | MsG0280006478.01.T01:CDS | 60.0% | |
GGTCCTGGTGCTTCAGATGG+TGG | - | Chr2:2536632-2536651 | MsG0280006478.01.T01:CDS | 60.0% | |
! | ACAGAGACGGCACTGGAAGC+AGG | - | Chr2:2536653-2536672 | MsG0280006478.01.T01:CDS | 60.0% |
! | ACAGCCGGTGAAGTAGCGGA+TGG | - | Chr2:2536587-2536606 | MsG0280006478.01.T01:CDS | 60.0% |
! | GGTCCACCATCTGAAGCACC+AGG | + | Chr2:2536626-2536645 | MsG0280006477.01.T01:CDS | 60.0% |
CCAGTGGCAGGAGAAGACGC+CGG | - | Chr2:2536548-2536567 | MsG0280006478.01.T01:CDS | 65.0% | |
GCAGGAGAAGACGCCGGTGA+TGG | - | Chr2:2536542-2536561 | MsG0280006478.01.T01:CDS | 65.0% | |
! | ACGGCACTGGAAGCAGGTCC+TGG | - | Chr2:2536647-2536666 | MsG0280006478.01.T01:CDS | 65.0% |
CCGGCGTCTTCTCCTGCCAC+TGG | + | Chr2:2536545-2536564 | MsG0280006477.01.T01:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 2536413 | 2536730 | 2536413 | ID=MsG0280006477.01;Name=MsG0280006477.01 |
Chr2 | mRNA | 2536413 | 2536730 | 2536413 | ID=MsG0280006477.01.T01;Parent=MsG0280006477.01;Name=MsG0280006477.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|105 |
Chr2 | exon | 2536413 | 2536730 | 2536413 | ID=MsG0280006477.01.T01:exon:19223;Parent=MsG0280006477.01.T01 |
Chr2 | CDS | 2536413 | 2536730 | 2536413 | ID=MsG0280006477.01.T01:cds;Parent=MsG0280006477.01.T01 |
Gene Sequence |
Protein sequence |