Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005267.01.T01 | XP_003591981.1 | 49.524 | 210 | 9 | 5 | 1 | 138 | 1 | 185 | 3.16E-46 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005267.01.T01 | G7I9N5 | 49.524 | 210 | 9 | 5 | 1 | 138 | 1 | 185 | 1.51e-46 | 158 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048745.01 | MsG0180005267.01 | 0.806588 | 7.648956e-50 | 4.167425e-47 |
| MsG0180000148.01 | MsG0180005267.01 | 0.802073 | 6.670244e-49 | 3.237189e-46 |
| MsG0180000466.01 | MsG0180005267.01 | 0.828150 | 1.055079e-54 | 1.039990e-51 |
| MsG0180001004.01 | MsG0180005267.01 | 0.823402 | 1.411894e-53 | 1.214332e-50 |
| MsG0180001029.01 | MsG0180005267.01 | 0.819549 | 1.095372e-52 | 8.455364e-50 |
| MsG0180003320.01 | MsG0180005267.01 | 0.830434 | 2.942630e-55 | 3.099935e-52 |
| MsG0180003405.01 | MsG0180005267.01 | -0.821621 | 3.663913e-53 | 2.995967e-50 |
| MsG0180004359.01 | MsG0180005267.01 | 0.808057 | 3.733472e-50 | 2.113335e-47 |
| MsG0180004610.01 | MsG0180005267.01 | 0.802279 | 6.050478e-49 | 2.951858e-46 |
| MsG0180004830.01 | MsG0180005267.01 | 0.804919 | 1.714604e-49 | 8.951665e-47 |
| MsG0180005267.01 | MsG0280006546.01 | 0.803786 | 2.952736e-49 | 1.497162e-46 |
| MsG0180005267.01 | MsG0280006560.01 | 0.806679 | 7.316189e-50 | 3.995417e-47 |
| MsG0180005267.01 | MsG0280006575.01 | 0.800466 | 1.422571e-48 | 6.628292e-46 |
| MsG0180005267.01 | MsG0280006579.01 | 0.832079 | 1.159999e-55 | 1.282875e-52 |
| MsG0180005267.01 | MsG0280007504.01 | 0.806518 | 7.911238e-50 | 4.302815e-47 |
| MsG0180005267.01 | MsG0280009432.01 | 0.825753 | 3.946604e-54 | 3.629800e-51 |
| MsG0180005267.01 | MsG0280009526.01 | 0.813873 | 2.052775e-51 | 1.356489e-48 |
| MsG0180005267.01 | MsG0280009644.01 | 0.802662 | 5.045272e-49 | 2.485449e-46 |
| MsG0180005267.01 | MsG0280009657.01 | 0.802686 | 4.987263e-49 | 2.458461e-46 |
| MsG0180005267.01 | MsG0280011269.01 | 0.821085 | 4.868796e-53 | 3.922671e-50 |
| MsG0180005267.01 | MsG0280011281.01 | -0.810456 | 1.142225e-50 | 6.888283e-48 |
| MsG0180005267.01 | MsG0380012222.01 | 0.814562 | 1.446359e-51 | 9.737792e-49 |
| MsG0180005267.01 | MsG0380014231.01 | -0.804305 | 2.301949e-49 | 1.182848e-46 |
| MsG0180005267.01 | MsG0380014639.01 | -0.807519 | 4.859376e-50 | 2.712351e-47 |
| MsG0180005267.01 | MsG0380014642.01 | -0.801843 | 7.435954e-49 | 3.587810e-46 |
| MsG0180005267.01 | MsG0380016299.01 | 0.805828 | 1.105329e-49 | 5.906833e-47 |
| MsG0180005267.01 | MsG0380016456.01 | -0.801917 | 7.179205e-49 | 3.470387e-46 |
| MsG0180005267.01 | MsG0380016490.01 | 0.814749 | 1.314900e-51 | 8.896959e-49 |
| MsG0180005267.01 | MsG0380017168.01 | 0.835967 | 1.232827e-56 | 1.531650e-53 |
| MsG0180005267.01 | MsG0380017901.01 | 0.816869 | 4.426494e-52 | 3.173912e-49 |
| MsG0180005267.01 | MsG0480018202.01 | -0.804800 | 1.815752e-49 | 9.450271e-47 |
| MsG0180005267.01 | MsG0480018362.01 | 0.808220 | 3.446281e-50 | 1.959314e-47 |
| MsG0180005267.01 | MsG0480019171.01 | 0.807993 | 3.853455e-50 | 2.177594e-47 |
| MsG0180005267.01 | MsG0480019817.01 | 0.809486 | 1.847502e-50 | 1.086091e-47 |
| MsG0180005267.01 | MsG0480020904.01 | 0.828333 | 9.531143e-55 | 9.444213e-52 |
| MsG0180005267.01 | MsG0480021227.01 | 0.810784 | 9.701146e-51 | 5.902226e-48 |
| MsG0180005267.01 | MsG0480021231.01 | 0.812985 | 3.217772e-51 | 2.075617e-48 |
| MsG0180005267.01 | MsG0480021967.01 | -0.802504 | 5.438360e-49 | 2.668416e-46 |
| MsG0180005267.01 | MsG0480023851.01 | -0.809743 | 1.626960e-50 | 9.630651e-48 |
| MsG0180005267.01 | MsG0580025524.01 | 0.805998 | 1.018176e-49 | 5.464974e-47 |
| MsG0180005267.01 | MsG0580026521.01 | 0.801129 | 1.041519e-48 | 4.935496e-46 |
| MsG0180005267.01 | MsG0580027135.01 | 0.803065 | 4.164685e-49 | 2.072778e-46 |
| MsG0180005267.01 | MsG0580027276.01 | -0.801288 | 9.665284e-49 | 4.598363e-46 |
| MsG0180005267.01 | MsG0580029218.01 | 0.801270 | 9.745858e-49 | 4.634638e-46 |
| MsG0180005267.01 | MsG0680031200.01 | 0.821463 | 3.984629e-53 | 3.243857e-50 |
| MsG0180005267.01 | MsG0680032932.01 | 0.807721 | 4.401628e-50 | 2.469759e-47 |
| MsG0180005267.01 | MsG0680034238.01 | 0.811974 | 5.351780e-51 | 3.360290e-48 |
| MsG0180005267.01 | MsG0780036649.01 | 0.807864 | 4.103492e-50 | 2.311014e-47 |
| MsG0180005267.01 | MsG0780036839.01 | 0.806706 | 7.219640e-50 | 3.945562e-47 |
| MsG0180005267.01 | MsG0780039287.01 | -0.806972 | 6.343251e-50 | 3.490561e-47 |
| MsG0180005267.01 | MsG0780039619.01 | 0.800460 | 1.426643e-48 | 6.646317e-46 |
| MsG0180005267.01 | MsG0780040716.01 | 0.835646 | 1.486942e-56 | 1.829612e-53 |
| MsG0180005267.01 | MsG0780041248.01 | 0.811860 | 5.667162e-51 | 3.547308e-48 |
| MsG0180005267.01 | MsG0880042641.01 | 0.805457 | 1.322662e-49 | 7.001170e-47 |
| MsG0180005267.01 | MsG0880043550.01 | 0.800215 | 1.599969e-48 | 7.407903e-46 |
| MsG0180005267.01 | MsG0880044548.01 | -0.800563 | 1.358904e-48 | 6.347530e-46 |
| MsG0180005267.01 | MsG0880044712.01 | 0.814400 | 1.570739e-51 | 1.052910e-48 |
| MsG0180005267.01 | MsG0880045063.01 | -0.803599 | 3.228023e-49 | 1.628949e-46 |
| MsG0180005267.01 | MsG0880045725.01 | 0.804870 | 1.755536e-49 | 9.153822e-47 |
| MsG0180005267.01 | MsG0880046010.01 | -0.805015 | 1.637263e-49 | 8.568186e-47 |
| MsG0180005267.01 | MsG0880046870.01 | 0.823236 | 1.544347e-53 | 1.322144e-50 |
| MsG0180005267.01 | MsG0880047090.01 | 0.803896 | 2.800875e-49 | 1.424245e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005267.01.T01 | MTR_1g095900 | 49.524 | 210 | 9 | 5 | 1 | 138 | 1 | 185 | 3.82e-50 | 158 |
| MsG0180005267.01.T01 | MTR_1g095890 | 44.076 | 211 | 20 | 4 | 1 | 138 | 1 | 186 | 1.71e-42 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005267.01.T01 | AT2G35810 | 43.382 | 136 | 25 | 4 | 25 | 137 | 92 | 198 | 3.38e-26 | 97.8 |
| MsG0180005267.01.T01 | AT2G35810 | 43.382 | 136 | 25 | 4 | 25 | 137 | 92 | 198 | 3.38e-26 | 97.8 |
| MsG0180005267.01.T01 | AT2G35830 | 43.609 | 133 | 30 | 4 | 25 | 137 | 73 | 180 | 7.80e-25 | 94.0 |
| MsG0180005267.01.T01 | AT2G35830 | 43.609 | 133 | 30 | 4 | 25 | 137 | 78 | 185 | 7.81e-25 | 94.0 |
| MsG0180005267.01.T01 | AT2G35820 | 40.458 | 131 | 35 | 4 | 25 | 137 | 78 | 183 | 1.73e-21 | 85.5 |
| MsG0180005267.01.T01 | AT2G35820 | 40.458 | 131 | 35 | 4 | 25 | 137 | 168 | 273 | 4.90e-21 | 86.3 |
Find 32 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTAATGTTTGGTATCT+TGG | 0.305200 | 1:+89373697 | MsG0180005267.01.T01:CDS |
| CGGTGAAGCTTGACGAATTT+GGG | 0.309643 | 1:-89373855 | None:intergenic |
| GCGGTGAAGCTTGACGAATT+TGG | 0.316031 | 1:-89373856 | None:intergenic |
| CGTGAAGGTGGTGACAATTA+AGG | 0.355574 | 1:+89372486 | MsG0180005267.01.T01:CDS |
| AGAGCATGTCAAATGAATTC+AGG | 0.383024 | 1:-89374001 | None:intergenic |
| GGTCCATTGGTGGTAATGTT+TGG | 0.450428 | 1:+89373689 | MsG0180005267.01.T01:CDS |
| GATGTAAGATTCCATTGAAA+GGG | 0.457158 | 1:-89373969 | None:intergenic |
| GACTCAGTGCCTGGGTCCAT+TGG | 0.465841 | 1:+89373676 | MsG0180005267.01.T01:intron |
| CACCGCGGTACATGGCATGC+TGG | 0.498508 | 1:+89373873 | MsG0180005267.01.T01:CDS |
| TCATTTGAATCAACAACTGA+TGG | 0.498895 | 1:-89373730 | None:intergenic |
| TCAAGCTTCACCGCGGTACA+TGG | 0.506906 | 1:+89373865 | MsG0180005267.01.T01:CDS |
| TCAAAGATGACTCAGGAAAA+CGG | 0.522749 | 1:+89373755 | MsG0180005267.01.T01:CDS |
| TAAGGCAATCGAAGCAACTC+CGG | 0.529722 | 1:+89372504 | MsG0180005267.01.T01:CDS |
| CCGTAGTCTTTGAAGTTCGC+CGG | 0.533633 | 1:-89372523 | None:intergenic |
| ATACCAAACATTACCACCAA+TGG | 0.547916 | 1:-89373692 | None:intergenic |
| AGATGTAAGATTCCATTGAA+AGG | 0.548712 | 1:-89373970 | None:intergenic |
| TCAGTGCCTGGGTCCATTGG+TGG | 0.564340 | 1:+89373679 | MsG0180005267.01.T01:intron |
| AATGAAATCAAAGATGACTC+AGG | 0.574790 | 1:+89373748 | MsG0180005267.01.T01:CDS |
| CACAACTTTAAGAATGACAA+TGG | 0.590296 | 1:+89374131 | MsG0180005267.01.T01:CDS |
| GGACTTCTACAATCTAGAGT+TGG | 0.602394 | 1:+89373920 | MsG0180005267.01.T01:CDS |
| TAATGTTTGGTATCTTGGAG+TGG | 0.602976 | 1:+89373702 | MsG0180005267.01.T01:CDS |
| AATAATGGAGAGCGTGAAGG+TGG | 0.607965 | 1:+89372474 | None:intergenic |
| GGAAAACGGTCGTTAAGCGT+AGG | 0.620167 | 1:+89373769 | MsG0180005267.01.T01:CDS |
| AATAATAATGGAGAGCGTGA+AGG | 0.623264 | 1:+89372471 | None:intergenic |
| CCGGCGAACTTCAAAGACTA+CGG | 0.628730 | 1:+89372523 | MsG0180005267.01.T01:CDS |
| GCAAATGTGACTCAGTGCCT+GGG | 0.634650 | 1:+89373668 | MsG0180005267.01.T01:intron |
| ATGTAAGATTCCATTGAAAG+GGG | 0.634905 | 1:-89373968 | None:intergenic |
| ACATTACCACCAATGGACCC+AGG | 0.650151 | 1:-89373685 | None:intergenic |
| ATCGTGCTAGACTTAAATAG+AGG | 0.664302 | 1:-89373897 | None:intergenic |
| TCTATTTAAGTCTAGCACGA+TGG | 0.669627 | 1:+89373899 | MsG0180005267.01.T01:CDS |
| GACCAGCATGCCATGTACCG+CGG | 0.687313 | 1:-89373875 | None:intergenic |
| AAATTCGTCAAGCTTCACCG+CGG | 0.805303 | 1:+89373858 | MsG0180005267.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAACATATAGAATT+TGG | - | Chr1:89372675-89372694 | None:intergenic | 10.0% |
| !!! | AACTAATTTTAATAATATGT+TGG | - | Chr1:89373580-89373599 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCACTTTAATTTT+GGG | + | Chr1:89372696-89372715 | MsG0180005267.01.T01:intron | 10.0% |
| !! | AAGGAAACAAAAAAAAAAAA+AGG | - | Chr1:89373312-89373331 | None:intergenic | 15.0% |
| !! | TTAAAGATAACATTTATCTT+TGG | + | Chr1:89373186-89373205 | MsG0180005267.01.T01:intron | 15.0% |
| !!! | ATTTTCTTATTTTTGTAAGT+TGG | - | Chr1:89372647-89372666 | None:intergenic | 15.0% |
| !!! | GATTTTTTTCACTTTAATTT+TGG | + | Chr1:89372695-89372714 | MsG0180005267.01.T01:intron | 15.0% |
| !!! | TAATTTTAATAATATGTTGG+AGG | - | Chr1:89373577-89373596 | None:intergenic | 15.0% |
| !! | AATGAACTGATATGTTAAAA+AGG | - | Chr1:89373044-89373063 | None:intergenic | 20.0% |
| !! | AGGAAATATATACATGATAA+TGG | - | Chr1:89373080-89373099 | None:intergenic | 20.0% |
| !! | GAACTAGTAAAATTTATTAG+AGG | + | Chr1:89372902-89372921 | MsG0180005267.01.T01:intron | 20.0% |
| !! | TGAAAAACTTACATTTGTAT+TGG | - | Chr1:89373946-89373965 | None:intergenic | 20.0% |
| !!! | AAAATTAGTTTGTGTTTTGT+AGG | + | Chr1:89373590-89373609 | MsG0180005267.01.T01:intron | 20.0% |
| !!! | AATACAAATGTAAGTTTTTC+AGG | + | Chr1:89373945-89373964 | MsG0180005267.01.T01:CDS | 20.0% |
| !!! | CCAATAATATATAGTTTTGA+CGG | - | Chr1:89372985-89373004 | None:intergenic | 20.0% |
| !!! | TGTCATTTTTTTTAATCGTT+TGG | + | Chr1:89374060-89374079 | MsG0180005267.01.T01:intron | 20.0% |
| !!! | TTTTTTTTGTTTCCTTTTGA+TGG | + | Chr1:89373316-89373335 | MsG0180005267.01.T01:intron | 20.0% |
| ! | AAATGTGACGATTATTAGTA+TGG | + | Chr1:89373223-89373242 | MsG0180005267.01.T01:intron | 25.0% |
| ! | AATGTGACGATTATTAGTAT+GGG | + | Chr1:89373224-89373243 | MsG0180005267.01.T01:intron | 25.0% |
| ! | CATTATATTTCACACGAATA+AGG | - | Chr1:89373100-89373119 | None:intergenic | 25.0% |
| ! | CCGTCAAAACTATATATTAT+TGG | + | Chr1:89372982-89373001 | MsG0180005267.01.T01:intron | 25.0% |
| ! | TACTTTATAGCAAAATTGAG+AGG | + | Chr1:89373397-89373416 | MsG0180005267.01.T01:intron | 25.0% |
| ! | TATATACTACCCTATTATCT+TGG | + | Chr1:89373355-89373374 | MsG0180005267.01.T01:intron | 25.0% |
| !! | ATCTAAGACATACTACAAAA+CGG | - | Chr1:89373021-89373040 | None:intergenic | 25.0% |
| !! | TGATTCTAGAAAACTTTAGT+GGG | - | Chr1:89373642-89373661 | None:intergenic | 25.0% |
| !! | TTTGCTATAAAGTAGTTTAG+TGG | - | Chr1:89373391-89373410 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTATTATGTGTAC+AGG | + | Chr1:89374091-89374110 | MsG0180005267.01.T01:intron | 25.0% |
| !!! | TTTTCACTTTAATTTTGGGT+TGG | + | Chr1:89372700-89372719 | MsG0180005267.01.T01:intron | 25.0% |
| AAACGTTCGATCTTAATCAT+AGG | + | Chr1:89372764-89372783 | MsG0180005267.01.T01:intron | 30.0% | |
| AATGAAATCAAAGATGACTC+AGG | + | Chr1:89373748-89373767 | MsG0180005267.01.T01:CDS | 30.0% | |
| AGATGTAAGATTCCATTGAA+AGG | - | Chr1:89373973-89373992 | None:intergenic | 30.0% | |
| AGTTTATCCATACCATCAAA+AGG | - | Chr1:89373331-89373350 | None:intergenic | 30.0% | |
| ATGTAAGATTCCATTGAAAG+GGG | - | Chr1:89373971-89373990 | None:intergenic | 30.0% | |
| CTATAAAGTAGTTTAGTGGT+GGG | - | Chr1:89373387-89373406 | None:intergenic | 30.0% | |
| GATGTAAGATTCCATTGAAA+GGG | - | Chr1:89373972-89373991 | None:intergenic | 30.0% | |
| GATTATTAGTATGGGACATA+GGG | + | Chr1:89373232-89373251 | MsG0180005267.01.T01:intron | 30.0% | |
| TAATAATATGTTGGAGGACT+TGG | - | Chr1:89373571-89373590 | None:intergenic | 30.0% | |
| TATCAGTTAAATTGAGCTGA+TGG | - | Chr1:89373499-89373518 | None:intergenic | 30.0% | |
| TCATTTGAATCAACAACTGA+TGG | - | Chr1:89373733-89373752 | None:intergenic | 30.0% | |
| TTGGTGAAATATGAAAACCT+GGG | - | Chr1:89372628-89372647 | None:intergenic | 30.0% | |
| ! | CACAACTTTAAGAATGACAA+TGG | + | Chr1:89374131-89374150 | MsG0180005267.01.T01:CDS | 30.0% |
| ! | GTGATTCTAGAAAACTTTAG+TGG | - | Chr1:89373643-89373662 | None:intergenic | 30.0% |
| !! | TTTGTTTCCTTTTGATGGTA+TGG | + | Chr1:89373321-89373340 | MsG0180005267.01.T01:intron | 30.0% |
| AGAGCATGTCAAATGAATTC+AGG | - | Chr1:89374004-89374023 | None:intergenic | 35.0% | |
| AGTACCAAGTTTACACTGTT+TGG | + | Chr1:89373255-89373274 | MsG0180005267.01.T01:intron | 35.0% | |
| ATACCAAACATTACCACCAA+TGG | - | Chr1:89373695-89373714 | None:intergenic | 35.0% | |
| ATCGTGCTAGACTTAAATAG+AGG | - | Chr1:89373900-89373919 | None:intergenic | 35.0% | |
| CGATTATTAGTATGGGACAT+AGG | + | Chr1:89373231-89373250 | MsG0180005267.01.T01:intron | 35.0% | |
| GACCTGAAATCTTGAAAACT+TGG | - | Chr1:89373836-89373855 | None:intergenic | 35.0% | |
| GCTATAAAGTAGTTTAGTGG+TGG | - | Chr1:89373388-89373407 | None:intergenic | 35.0% | |
| GTACCAAGTTTACACTGTTT+GGG | + | Chr1:89373256-89373275 | MsG0180005267.01.T01:intron | 35.0% | |
| TAATGTTTGGTATCTTGGAG+TGG | + | Chr1:89373702-89373721 | MsG0180005267.01.T01:CDS | 35.0% | |
| TATAGCAAAATTGAGAGGCT+AGG | + | Chr1:89373402-89373421 | MsG0180005267.01.T01:intron | 35.0% | |
| TCAAAGATGACTCAGGAAAA+CGG | + | Chr1:89373755-89373774 | MsG0180005267.01.T01:CDS | 35.0% | |
| TCTATTTAAGTCTAGCACGA+TGG | + | Chr1:89373899-89373918 | MsG0180005267.01.T01:CDS | 35.0% | |
| TGCAAAGTTTCTTTCTTCGA+TGG | - | Chr1:89373442-89373461 | None:intergenic | 35.0% | |
| ! | GTTGGTGAAATATGAAAACC+TGG | - | Chr1:89372629-89372648 | None:intergenic | 35.0% |
| !! | ATGCTCTTTAGAGTAAGACA+TGG | + | Chr1:89374017-89374036 | MsG0180005267.01.T01:intron | 35.0% |
| !! | GTCCAAGTTTTCAAGATTTC+AGG | + | Chr1:89373831-89373850 | MsG0180005267.01.T01:intron | 35.0% |
| !! | TGCTCTTTAGAGTAAGACAT+GGG | + | Chr1:89374018-89374037 | MsG0180005267.01.T01:intron | 35.0% |
| !! | TTTGGGTTGGATTGATCATT+TGG | + | Chr1:89372713-89372732 | MsG0180005267.01.T01:intron | 35.0% |
| AAAACCTGGGAAATATCCCT+TGG | - | Chr1:89372615-89372634 | None:intergenic | 40.0% | |
| AAACCTGGGAAATATCCCTT+GGG | - | Chr1:89372614-89372633 | None:intergenic | 40.0% | |
| CAACCCAAACAGTGTAAACT+TGG | - | Chr1:89373262-89373281 | None:intergenic | 40.0% | |
| GGGTGAATGCCAAGATAATA+GGG | - | Chr1:89373367-89373386 | None:intergenic | 40.0% | |
| TGGGTGAATGCCAAGATAAT+AGG | - | Chr1:89373368-89373387 | None:intergenic | 40.0% | |
| ! | GGACTTCTACAATCTAGAGT+TGG | + | Chr1:89373920-89373939 | MsG0180005267.01.T01:CDS | 40.0% |
| ! | GGTGGTAATGTTTGGTATCT+TGG | + | Chr1:89373697-89373716 | MsG0180005267.01.T01:CDS | 40.0% |
| !! | AGATCAAGTTGAGCATCATG+GGG | - | Chr1:89372589-89372608 | None:intergenic | 40.0% |
| !! | GAGATCAAGTTGAGCATCAT+GGG | - | Chr1:89372590-89372609 | None:intergenic | 40.0% |
| !! | TGAGATCAAGTTGAGCATCA+TGG | - | Chr1:89372591-89372610 | None:intergenic | 40.0% |
| AAATTCGTCAAGCTTCACCG+CGG | + | Chr1:89373858-89373877 | MsG0180005267.01.T01:CDS | 45.0% | |
| AGCAAAATTGAGAGGCTAGG+AGG | + | Chr1:89373405-89373424 | MsG0180005267.01.T01:intron | 45.0% | |
| CGGTGAAGCTTGACGAATTT+GGG | - | Chr1:89373858-89373877 | None:intergenic | 45.0% | |
| CGTGAAGGTGGTGACAATTA+AGG | + | Chr1:89372486-89372505 | MsG0180005267.01.T01:CDS | 45.0% | |
| CTCAACTTGATCTCACCCAA+GGG | + | Chr1:89372596-89372615 | MsG0180005267.01.T01:intron | 45.0% | |
| GAAAACTTGGACGTCCTCAA+CGG | - | Chr1:89373823-89373842 | None:intergenic | 45.0% | |
| GAACTTCAAAGACTACGGTC+AGG | + | Chr1:89372528-89372547 | MsG0180005267.01.T01:intron | 45.0% | |
| TAAGGCAATCGAAGCAACTC+CGG | + | Chr1:89372504-89372523 | MsG0180005267.01.T01:CDS | 45.0% | |
| TGAGAGGCTAGGAGGAATAT+TGG | + | Chr1:89373413-89373432 | MsG0180005267.01.T01:intron | 45.0% | |
| ! | GGTCCATTGGTGGTAATGTT+TGG | + | Chr1:89373689-89373708 | MsG0180005267.01.T01:CDS | 45.0% |
| !!! | GTTTTTCAGGCCCCTTTCAA+TGG | + | Chr1:89373958-89373977 | MsG0180005267.01.T01:CDS | 45.0% |
| ACATTACCACCAATGGACCC+AGG | - | Chr1:89373688-89373707 | None:intergenic | 50.0% | |
| CCGGCGAACTTCAAAGACTA+CGG | + | Chr1:89372523-89372542 | MsG0180005267.01.T01:CDS | 50.0% | |
| GCAAATGTGACTCAGTGCCT+GGG | + | Chr1:89373668-89373687 | MsG0180005267.01.T01:intron | 50.0% | |
| GCGGTGAAGCTTGACGAATT+TGG | - | Chr1:89373859-89373878 | None:intergenic | 50.0% | |
| GCTCAACTTGATCTCACCCA+AGG | + | Chr1:89372595-89372614 | MsG0180005267.01.T01:intron | 50.0% | |
| GGAAAACGGTCGTTAAGCGT+AGG | + | Chr1:89373769-89373788 | MsG0180005267.01.T01:CDS | 50.0% | |
| TCACCCAAGGGATATTTCCC+AGG | + | Chr1:89372608-89372627 | MsG0180005267.01.T01:intron | 50.0% | |
| TGCAAATGTGACTCAGTGCC+TGG | + | Chr1:89373667-89373686 | MsG0180005267.01.T01:intron | 50.0% | |
| TTATGTTCCTCCCACCGTTG+AGG | + | Chr1:89373806-89373825 | MsG0180005267.01.T01:intron | 50.0% | |
| !! | CCGTAGTCTTTGAAGTTCGC+CGG | - | Chr1:89372526-89372545 | None:intergenic | 50.0% |
| AAACCCAGGCTGTCTGGTGA+AGG | - | Chr1:89372562-89372581 | None:intergenic | 55.0% | |
| AACTTGGACGTCCTCAACGG+TGG | - | Chr1:89373820-89373839 | None:intergenic | 55.0% | |
| ACGGTCGTTAAGCGTAGGTG+CGG | + | Chr1:89373774-89373793 | MsG0180005267.01.T01:intron | 55.0% | |
| ACTTGGACGTCCTCAACGGT+GGG | - | Chr1:89373819-89373838 | None:intergenic | 55.0% | |
| CATCATGGGGACCAAAACCC+AGG | - | Chr1:89372576-89372595 | None:intergenic | 55.0% | |
| TCAAGCTTCACCGCGGTACA+TGG | + | Chr1:89373865-89373884 | MsG0180005267.01.T01:CDS | 55.0% | |
| ! | TCACCAGACAGCCTGGGTTT+TGG | + | Chr1:89372562-89372581 | MsG0180005267.01.T01:intron | 55.0% |
| GACCAGCATGCCATGTACCG+CGG | - | Chr1:89373878-89373897 | None:intergenic | 60.0% | |
| GACTCAGTGCCTGGGTCCAT+TGG | + | Chr1:89373676-89373695 | MsG0180005267.01.T01:intron | 60.0% | |
| GAGCCTTCACCAGACAGCCT+GGG | + | Chr1:89372556-89372575 | MsG0180005267.01.T01:intron | 60.0% | |
| GGACCAAAACCCAGGCTGTC+TGG | - | Chr1:89372568-89372587 | None:intergenic | 60.0% | |
| GTCGTTAAGCGTAGGTGCGG+CGG | + | Chr1:89373777-89373796 | MsG0180005267.01.T01:intron | 60.0% | |
| TCAGTGCCTGGGTCCATTGG+TGG | + | Chr1:89373679-89373698 | MsG0180005267.01.T01:intron | 60.0% | |
| CACCGCGGTACATGGCATGC+TGG | + | Chr1:89373873-89373892 | MsG0180005267.01.T01:CDS | 65.0% | |
| CGAGCCTTCACCAGACAGCC+TGG | + | Chr1:89372555-89372574 | MsG0180005267.01.T01:intron | 65.0% | |
| TGGACGTCCTCAACGGTGGG+AGG | - | Chr1:89373816-89373835 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 89372478 | 89374178 | 89372478 | ID=MsG0180005267.01;Name=MsG0180005267.01 |
| Chr1 | mRNA | 89372478 | 89374178 | 89372478 | ID=MsG0180005267.01.T01;Parent=MsG0180005267.01;Name=MsG0180005267.01.T01;_AED=0.50;_eAED=0.59;_QI=0|0|0|1|1|1|4|0|138 |
| Chr1 | exon | 89372478 | 89372544 | 89372478 | ID=MsG0180005267.01.T01:exon:17222;Parent=MsG0180005267.01.T01 |
| Chr1 | exon | 89373683 | 89373790 | 89373683 | ID=MsG0180005267.01.T01:exon:17223;Parent=MsG0180005267.01.T01 |
| Chr1 | exon | 89373853 | 89374028 | 89373853 | ID=MsG0180005267.01.T01:exon:17224;Parent=MsG0180005267.01.T01 |
| Chr1 | exon | 89374113 | 89374178 | 89374113 | ID=MsG0180005267.01.T01:exon:17225;Parent=MsG0180005267.01.T01 |
| Chr1 | CDS | 89372478 | 89372544 | 89372478 | ID=MsG0180005267.01.T01:cds;Parent=MsG0180005267.01.T01 |
| Chr1 | CDS | 89373683 | 89373790 | 89373683 | ID=MsG0180005267.01.T01:cds;Parent=MsG0180005267.01.T01 |
| Chr1 | CDS | 89373853 | 89374028 | 89373853 | ID=MsG0180005267.01.T01:cds;Parent=MsG0180005267.01.T01 |
| Chr1 | CDS | 89374113 | 89374178 | 89374113 | ID=MsG0180005267.01.T01:cds;Parent=MsG0180005267.01.T01 |
| Gene Sequence |
| Protein sequence |
