AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006575.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006575.01.T01 MTR_2g011080 96.970 198 6 0 1 198 1 198 4.31e-140 389
MsG0280006575.01.T01 MTR_2g011080 97.436 195 5 0 4 198 9 203 1.19e-138 385
MsG0280006575.01.T01 MTR_4g091900 77.436 195 44 0 4 198 10 204 1.76e-109 311
MsG0280006575.01.T01 MTR_4g091900 77.604 192 43 0 7 198 1 192 1.43e-107 306
MsG0280006575.01.T01 MTR_2g011080 97.368 152 4 0 47 198 1 152 1.13e-105 300
MsG0280006575.01.T01 MTR_2g081810 75.521 192 47 0 4 195 9 200 2.35e-105 301
MsG0280006575.01.T01 MTR_8g466030 72.917 192 52 0 4 195 9 200 9.93e-102 292
MsG0280006575.01.T01 MTR_5g070030 65.803 193 65 1 4 195 10 202 4.80e-92 268
MsG0280006575.01.T01 MTR_5g019620 61.538 195 74 1 4 197 58 252 1.36e-81 243
MsG0280006575.01.T01 MTR_4g069250 59.896 192 76 1 4 194 57 248 1.05e-78 236
MsG0280006575.01.T01 MTR_4g091890 75.833 120 25 1 79 198 1 116 1.25e-59 182
MsG0280006575.01.T01 MTR_8g466080 68.966 116 36 0 80 195 1 116 3.87e-52 163
MsG0280006575.01.T01 MTR_8g466110 50.420 119 31 4 47 164 1 92 2.76e-27 99.8
MsG0280006575.01.T01 MTR_8g466150 50.420 119 31 4 47 164 1 92 2.76e-27 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006575.01.T01 AT5G54500 75.773 194 47 0 4 197 9 202 4.41e-106 303
MsG0280006575.01.T01 AT4G27270 74.093 193 50 0 4 196 9 201 3.62e-105 301
MsG0280006575.01.T01 AT4G27270 74.211 190 49 0 7 196 1 190 2.91e-103 296
MsG0280006575.01.T01 AT4G27270 74.211 190 49 0 7 196 1 190 2.91e-103 296
MsG0280006575.01.T01 AT5G58800 63.731 193 69 1 4 195 10 202 4.70e-88 258
MsG0280006575.01.T01 AT5G58800 63.731 193 69 1 4 195 10 202 4.70e-88 258
MsG0280006575.01.T01 AT4G36750 63.021 192 70 1 4 194 79 270 1.56e-86 256
MsG0280006575.01.T01 AT5G54500 76.623 154 36 0 4 157 9 162 8.48e-84 248
MsG0280006575.01.T01 AT4G27270 74.000 150 39 0 47 196 1 150 2.76e-79 233

Find 49 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTTCAGACAATATTTC+TGG 0.196797 2:+3623191 None:intergenic
CCATATGGTTCAGGAACTTT+TGG 0.217112 2:-3621437 MsG0280006575.01.T01:CDS
TTGATGCAACTGGAAGTTTA+TGG 0.219786 2:-3623034 MsG0280006575.01.T01:CDS
TCAGCTTCAGCAAGCTGTTT+AGG 0.310193 2:+3623119 None:intergenic
CATCAGGGAAAATACTTTGC+TGG 0.334949 2:-3621365 MsG0280006575.01.T01:CDS
ATGTCATGTTTGTAACATAA+AGG 0.338604 2:-3621255 MsG0280006575.01.T01:three_prime_UTR
GTACCTATTGGATACACATT+TGG 0.364946 2:-3621500 MsG0280006575.01.T01:CDS
TGGAACAAACAAACACTTGC+AGG 0.373618 2:-3623014 MsG0280006575.01.T01:CDS
GAGGTGCTTTCATCTTCCTT+AGG 0.379219 2:+3623168 None:intergenic
TGTCATGTTTGTAACATAAA+GGG 0.381560 2:-3621254 MsG0280006575.01.T01:three_prime_UTR
GACATCATTCCATATCTTGC+TGG 0.429420 2:+3623077 None:intergenic
GGTGGATCACCATATGGTTC+AGG 0.438436 2:-3621446 MsG0280006575.01.T01:CDS
AGAACCTAGTGAGTTAGAAT+TGG 0.452588 2:-3621399 MsG0280006575.01.T01:CDS
TTACCAGACTATATGATAAG+TGG 0.453329 2:+3621284 None:intergenic
GCACCAAATGTGTATCCAAT+AGG 0.462098 2:+3621497 None:intergenic
TGACTAACGGTGTTTCCTCT+TGG 0.462284 2:+3622946 None:intergenic
CTAGCTGAAGAGATTCTAAA+GGG 0.480491 2:-3623496 MsG0280006575.01.T01:CDS
TCCACTGCTTCTCAAGGAAG+TGG 0.481946 2:-3622969 MsG0280006575.01.T01:CDS
CCAAAAGTTCCTGAACCATA+TGG 0.483267 2:+3621437 None:intergenic
GCTAGCTGAAGAGATTCTAA+AGG 0.492200 2:-3623497 MsG0280006575.01.T01:CDS
TTTAGTTACCATTCTGTGTA+CGG 0.493434 2:-3623532 MsG0280006575.01.T01:CDS
ATTGGATACACATTTGGTGC+TGG 0.493510 2:-3621494 MsG0280006575.01.T01:CDS
AATCCACTTATCATATAGTC+TGG 0.503832 2:-3621287 MsG0280006575.01.T01:three_prime_UTR
ATGTCTGGAACTTCACTCCT+TGG 0.507106 2:+3623146 None:intergenic
AGCTGTTTAGGTGAAATGTC+TGG 0.522083 2:+3623131 None:intergenic
GTGAAGGGTGGATCACCATA+TGG 0.524280 2:-3621452 MsG0280006575.01.T01:CDS
GCCACTTCCTTGAGAAGCAG+TGG 0.524631 2:+3622968 None:intergenic
CAACATGTCCGTACACAGAA+TGG 0.533687 2:+3623524 None:intergenic
TCTGGAACTTCACTCCTTGG+AGG 0.536604 2:+3623149 None:intergenic
AGTAGAAGCAAAACTCTGGC+AGG 0.554251 2:-3623455 MsG0280006575.01.T01:intron
ACACTTGCAGGAAAGCCTGC+TGG 0.566808 2:-3623002 MsG0280006575.01.T01:CDS
AAGGAGTAGAAGCAAAACTC+TGG 0.567226 2:-3623459 MsG0280006575.01.T01:CDS
GAGATGGAAAAGGTGAAGGG+TGG 0.571043 2:-3621464 MsG0280006575.01.T01:CDS
AAACAGCTTGCTGAAGCTGA+TGG 0.579655 2:-3623116 MsG0280006575.01.T01:CDS
TATTGTCTGAAGAAATCCTA+AGG 0.587507 2:-3623184 MsG0280006575.01.T01:CDS
TGAGCCAATTCTAACTCACT+AGG 0.588519 2:+3621395 None:intergenic
GTCATGTTTGTAACATAAAG+GGG 0.589852 2:-3621253 MsG0280006575.01.T01:three_prime_UTR
TGGTGCTGGAATGTTTGAGA+TGG 0.592919 2:-3621480 MsG0280006575.01.T01:CDS
GTTTGAGATGGAAAAGGTGA+AGG 0.593131 2:-3621468 MsG0280006575.01.T01:CDS
TGGAATGTTTGAGATGGAAA+AGG 0.598335 2:-3621474 MsG0280006575.01.T01:CDS
GGAAGATGAAAGCACCTCCA+AGG 0.601210 2:-3623163 MsG0280006575.01.T01:CDS
AAGTGGATTCAGAAATGCAG+TGG 0.601339 2:+3621301 None:intergenic
GGAATTGCAAAGAAGCTCAA+AGG 0.612793 2:-3621344 MsG0280006575.01.T01:CDS
TTCTCAAGGAAGTGGCCAAG+AGG 0.636619 2:-3622961 MsG0280006575.01.T01:CDS
AGCTGAAGAGATTCTAAAGG+GGG 0.639484 2:-3623494 MsG0280006575.01.T01:CDS
ATTACTCAGCTTGTTCACCA+TGG 0.640802 2:-3621533 MsG0280006575.01.T01:CDS
TCATGTTTGTAACATAAAGG+GGG 0.672646 2:-3621252 MsG0280006575.01.T01:three_prime_UTR
TAGCTGAAGAGATTCTAAAG+GGG 0.681515 2:-3623495 MsG0280006575.01.T01:CDS
TTTGAGATGGAAAAGGTGAA+GGG 0.701314 2:-3621467 MsG0280006575.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAATATATATCATTAG+TGG + Chr2:3621545-3621564 None:intergenic 10.0%
!! CAAAAAATTAACATATTTAT+AGG - Chr2:3623079-3623098 MsG0280006575.01.T01:CDS 10.0%
!! TTTATTGAGAAAAAAAATAA+AGG - Chr2:3622130-3622149 MsG0280006575.01.T01:intron 10.0%
!!! AATTAGATCATTTTTTTTTT+TGG - Chr2:3622477-3622496 MsG0280006575.01.T01:intron 10.0%
!!! ATATAAATTTATTCTAAAAG+AGG - Chr2:3622988-3623007 MsG0280006575.01.T01:CDS 10.0%
!!! ATTTTTCTTTTAAAAAAACA+AGG + Chr2:3622421-3622440 None:intergenic 10.0%
!!! TATAAATTTATTCTAAAAGA+GGG - Chr2:3622989-3623008 MsG0280006575.01.T01:CDS 10.0%
!!! TTTTTCTTTTAAAAAAACAA+GGG + Chr2:3622420-3622439 None:intergenic 10.0%
!! AAGTATAAATGAATTACAAT+TGG - Chr2:3621404-3621423 MsG0280006575.01.T01:CDS 15.0%
!! TGTATTGTAAAAATAGTAAA+AGG - Chr2:3622212-3622231 MsG0280006575.01.T01:intron 15.0%
!!! ATTTTTACAATACACTAAAA+TGG + Chr2:3622206-3622225 None:intergenic 15.0%
!! TAAATTCTACAAGGAAAAAA+GGG + Chr2:3623123-3623142 None:intergenic 20.0%
!! TAATCTGAATGAAAATGAAA+AGG + Chr2:3621348-3621367 None:intergenic 20.0%
!! TGGGAAAAATAAGATTATTA+CGG + Chr2:3622277-3622296 None:intergenic 20.0%
!!! AATTGAAGATGAAAAACTTT+TGG - Chr2:3623017-3623036 MsG0280006575.01.T01:CDS 20.0%
! AAATTCTACAAGGAAAAAAG+GGG + Chr2:3623122-3623141 None:intergenic 25.0%
! ATGTCATGTTTGTAACATAA+AGG - Chr2:3623516-3623535 MsG0280006575.01.T01:CDS 25.0%
! ATTTCTTCAGACAATATTTC+TGG + Chr2:3621583-3621602 None:intergenic 25.0%
! CTAAATTCTACAAGGAAAAA+AGG + Chr2:3623124-3623143 None:intergenic 25.0%
! GGGAAAAATAAGATTATTAC+GGG + Chr2:3622276-3622295 None:intergenic 25.0%
! TAAACTAACTAACAAACTTC+CGG - Chr2:3622681-3622700 MsG0280006575.01.T01:intron 25.0%
! TAGAAATTAGAAAGATGAGA+AGG + Chr2:3621856-3621875 None:intergenic 25.0%
! TGTCATGTTTGTAACATAAA+GGG - Chr2:3623517-3623536 MsG0280006575.01.T01:CDS 25.0%
! TTTACAATACACTAAAATGG+CGG + Chr2:3622203-3622222 None:intergenic 25.0%
!! AAAAGGGGTAAATATGTTTT+TGG + Chr2:3623107-3623126 None:intergenic 25.0%
!! ACATTTTAAATGTGAAGAAG+TGG - Chr2:3621924-3621943 MsG0280006575.01.T01:intron 25.0%
!! TAACCTATATGTTTTCTTAC+AGG - Chr2:3622044-3622063 MsG0280006575.01.T01:intron 25.0%
!! TCTTCACATTTAAAATGTGT+GGG + Chr2:3621922-3621941 None:intergenic 25.0%
!! TTAGTGCTTGTTTAGTATTT+TGG - Chr2:3621436-3621455 MsG0280006575.01.T01:CDS 25.0%
!! TTCTTCACATTTAAAATGTG+TGG + Chr2:3621923-3621942 None:intergenic 25.0%
!! TTTTATAACGAGACTTAGTT+GGG + Chr2:3622559-3622578 None:intergenic 25.0%
!! TTTTTATAACGAGACTTAGT+TGG + Chr2:3622560-3622579 None:intergenic 25.0%
!!! AAAGTATTTTTTGATGCAAC+TGG - Chr2:3621727-3621746 MsG0280006575.01.T01:intron 25.0%
!!! CTTTTTTCCTTGTAGAATTT+AGG - Chr2:3623122-3623141 MsG0280006575.01.T01:CDS 25.0%
!!! TCTATGGTTTTTCAATTTTC+AGG - Chr2:3623206-3623225 MsG0280006575.01.T01:intron 25.0%
!!! TCTTTTAAAAAAACAAGGGT+GGG + Chr2:3622416-3622435 None:intergenic 25.0%
!!! TTCTTTTAAAAAAACAAGGG+TGG + Chr2:3622417-3622436 None:intergenic 25.0%
AATCCACTTATCATATAGTC+TGG - Chr2:3623484-3623503 MsG0280006575.01.T01:CDS 30.0%
ACAAATAAATCCACTTACCA+TGG - Chr2:3622350-3622369 MsG0280006575.01.T01:intron 30.0%
CAAAGTAACTGTTTGTTCTA+TGG - Chr2:3623190-3623209 MsG0280006575.01.T01:CDS 30.0%
CAACCTGTAAGAAAACATAT+AGG + Chr2:3622050-3622069 None:intergenic 30.0%
GTATTACATATTATACGCAG+AGG + Chr2:3621973-3621992 None:intergenic 30.0%
GTCATGTTTGTAACATAAAG+GGG - Chr2:3623518-3623537 MsG0280006575.01.T01:CDS 30.0%
TAGGTACAAAAATCATACCA+TGG + Chr2:3623258-3623277 None:intergenic 30.0%
TATTGTCTGAAGAAATCCTA+AGG - Chr2:3621587-3621606 MsG0280006575.01.T01:intron 30.0%
TCATGTTTGTAACATAAAGG+GGG - Chr2:3623519-3623538 MsG0280006575.01.T01:CDS 30.0%
TCTGTTAACTATACAGAGTA+CGG - Chr2:3622714-3622733 MsG0280006575.01.T01:intron 30.0%
TTACCAGACTATATGATAAG+TGG + Chr2:3623490-3623509 None:intergenic 30.0%
TTTAGTTACCATTCTGTGTA+CGG - Chr2:3621239-3621258 MsG0280006575.01.T01:three_prime_UTR 30.0%
! CTATATGTTTTCTTACAGGT+TGG - Chr2:3622048-3622067 MsG0280006575.01.T01:intron 30.0%
! GGTATGATTTTTGTACCTAT+TGG - Chr2:3623259-3623278 MsG0280006575.01.T01:intron 30.0%
! TATTTTTCCCACTTAGTGTA+TGG - Chr2:3622286-3622305 MsG0280006575.01.T01:intron 30.0%
! TGAAGATGAAAAACTTTTGG+AGG - Chr2:3623020-3623039 MsG0280006575.01.T01:CDS 30.0%
!! CTTTTAAAAAAACAAGGGTG+GGG + Chr2:3622415-3622434 None:intergenic 30.0%
!! TTTCTTACAGGTTGGTATTA+AGG - Chr2:3622056-3622075 MsG0280006575.01.T01:intron 30.0%
!!! CTTTTTTCCATACACTAAGT+GGG + Chr2:3622296-3622315 None:intergenic 30.0%
!!! TCTTTTTTCCATACACTAAG+TGG + Chr2:3622297-3622316 None:intergenic 30.0%
AGAACCTAGTGAGTTAGAAT+TGG - Chr2:3623372-3623391 MsG0280006575.01.T01:intron 35.0%
ATTACATCTTCCATGGTAAG+TGG + Chr2:3622363-3622382 None:intergenic 35.0%
CAAGTTCTCATCTCTATGTT+TGG + Chr2:3622020-3622039 None:intergenic 35.0%
CTAGCTGAAGAGATTCTAAA+GGG - Chr2:3621275-3621294 MsG0280006575.01.T01:three_prime_UTR 35.0%
GTACCTATTGGATACACATT+TGG - Chr2:3623271-3623290 MsG0280006575.01.T01:intron 35.0%
GTGCATATTTGATATCAGAG+TGG + Chr2:3621517-3621536 None:intergenic 35.0%
TACATATTATACGCAGAGGT+CGG + Chr2:3621969-3621988 None:intergenic 35.0%
TACCATGGAAGATGTAATCA+GGG - Chr2:3622365-3622384 MsG0280006575.01.T01:intron 35.0%
TTACCATGGAAGATGTAATC+AGG - Chr2:3622364-3622383 MsG0280006575.01.T01:intron 35.0%
TTGATGCAACTGGAAGTTTA+TGG - Chr2:3621737-3621756 MsG0280006575.01.T01:intron 35.0%
TTTCCTTGTAGAATTTAGGC+TGG - Chr2:3623126-3623145 MsG0280006575.01.T01:CDS 35.0%
TTTCTTGGACTCTACGTATA+CGG + Chr2:3622176-3622195 None:intergenic 35.0%
! ATATGGTTCAGGAACTTTTG+GGG - Chr2:3623336-3623355 MsG0280006575.01.T01:intron 35.0%
! ATTACGGGTTTGAGATAATG+TGG + Chr2:3622261-3622280 None:intergenic 35.0%
! CATATGGTTCAGGAACTTTT+GGG - Chr2:3623335-3623354 MsG0280006575.01.T01:intron 35.0%
! CGTTGACATTGACATTGATT+TGG + Chr2:3621471-3621490 None:intergenic 35.0%
! CTTTTAGCAAGTATATCCGA+TGG + Chr2:3623157-3623176 None:intergenic 35.0%
! TAGCTGAAGAGATTCTAAAG+GGG - Chr2:3621276-3621295 MsG0280006575.01.T01:three_prime_UTR 35.0%
! TGGAATGTTTGAGATGGAAA+AGG - Chr2:3623297-3623316 MsG0280006575.01.T01:intron 35.0%
! TTTGAGATGGAAAAGGTGAA+GGG - Chr2:3623304-3623323 MsG0280006575.01.T01:intron 35.0%
! TTTTGTCAAGTATAGCCTAG+TGG - Chr2:3621890-3621909 MsG0280006575.01.T01:intron 35.0%
!!! GAAGCTGATGGTTTTTTGTT+TGG - Chr2:3621667-3621686 MsG0280006575.01.T01:intron 35.0%
!!! TTTGGTTTTCCAGCAAGATA+TGG - Chr2:3621685-3621704 MsG0280006575.01.T01:intron 35.0%
AACATAAAGGGGGAAAAGAG+TGG - Chr2:3623529-3623548 MsG0280006575.01.T01:CDS 40.0%
AAGCCAGCCTAAATTCTACA+AGG + Chr2:3623132-3623151 None:intergenic 40.0%
AAGGAGTAGAAGCAAAACTC+TGG - Chr2:3621312-3621331 MsG0280006575.01.T01:three_prime_UTR 40.0%
ACATAAAGGGGGAAAAGAGT+GGG - Chr2:3623530-3623549 MsG0280006575.01.T01:CDS 40.0%
ACATATTATACGCAGAGGTC+GGG + Chr2:3621968-3621987 None:intergenic 40.0%
ACCATGGAAGATGTAATCAG+GGG - Chr2:3622366-3622385 MsG0280006575.01.T01:intron 40.0%
AGCTGTTTAGGTGAAATGTC+TGG + Chr2:3621643-3621662 None:intergenic 40.0%
ATAACGAGACTTAGTTGGGT+AGG + Chr2:3622555-3622574 None:intergenic 40.0%
CATCAGGGAAAATACTTTGC+TGG - Chr2:3623406-3623425 MsG0280006575.01.T01:intron 40.0%
CCAAAAGTTCCTGAACCATA+TGG + Chr2:3623337-3623356 None:intergenic 40.0%
GACATCATTCCATATCTTGC+TGG + Chr2:3621697-3621716 None:intergenic 40.0%
GCACCAAATGTGTATCCAAT+AGG + Chr2:3623277-3623296 None:intergenic 40.0%
GCTAGCTGAAGAGATTCTAA+AGG - Chr2:3621274-3621293 MsG0280006575.01.T01:three_prime_UTR 40.0%
GGAATTGCAAAGAAGCTCAA+AGG - Chr2:3623427-3623446 MsG0280006575.01.T01:intron 40.0%
TGAGAAGGATGAGTGACTAA+CGG + Chr2:3621841-3621860 None:intergenic 40.0%
TGAGCCAATTCTAACTCACT+AGG + Chr2:3623379-3623398 None:intergenic 40.0%
TGGAACAAACAAACACTTGC+AGG - Chr2:3621757-3621776 MsG0280006575.01.T01:intron 40.0%
TTCTTGGACTCTACGTATAC+GGG + Chr2:3622175-3622194 None:intergenic 40.0%
! AAGTGGATTCAGAAATGCAG+TGG + Chr2:3623473-3623492 None:intergenic 40.0%
! AGCTGAAGAGATTCTAAAGG+GGG - Chr2:3621277-3621296 MsG0280006575.01.T01:three_prime_UTR 40.0%
! ATGTGAAGAAGTGGAGTATC+TGG - Chr2:3621933-3621952 MsG0280006575.01.T01:intron 40.0%
! ATTACTCAGCTTGTTCACCA+TGG - Chr2:3623238-3623257 MsG0280006575.01.T01:intron 40.0%
! CCATATGGTTCAGGAACTTT+TGG - Chr2:3623334-3623353 MsG0280006575.01.T01:intron 40.0%
! GTTAACAGAGAGTTTGAGAC+CGG + Chr2:3622703-3622722 None:intergenic 40.0%
! GTTTGAGATGGAAAAGGTGA+AGG - Chr2:3623303-3623322 MsG0280006575.01.T01:intron 40.0%
! TGTGAAGAAGTGGAGTATCT+GGG - Chr2:3621934-3621953 MsG0280006575.01.T01:intron 40.0%
! TTGGCTCAAGCTTTTCATCA+GGG - Chr2:3623391-3623410 MsG0280006575.01.T01:intron 40.0%
! TTTTTCTCCACTGCTTCTCA+AGG - Chr2:3621796-3621815 MsG0280006575.01.T01:intron 40.0%
!! ACTTTTGGGGAACATGGAAT+AGG - Chr2:3623349-3623368 MsG0280006575.01.T01:intron 40.0%
!! ATTGGATACACATTTGGTGC+TGG - Chr2:3623277-3623296 MsG0280006575.01.T01:intron 40.0%
!! ATTGGCTCAAGCTTTTCATC+AGG - Chr2:3623390-3623409 MsG0280006575.01.T01:intron 40.0%
!! TAAAATGGCGGACTCTTTCT+TGG + Chr2:3622191-3622210 None:intergenic 40.0%
AAGATGTAATCAGGGGGGAA+GGG - Chr2:3622373-3622392 MsG0280006575.01.T01:intron 45.0%
AGTAGAAGCAAAACTCTGGC+AGG - Chr2:3621316-3621335 MsG0280006575.01.T01:exon 45.0%
CAACATGTCCGTACACAGAA+TGG + Chr2:3621250-3621269 None:intergenic 45.0%
CATGGAAGATGTAATCAGGG+GGG - Chr2:3622368-3622387 MsG0280006575.01.T01:intron 45.0%
CCATGGAAGATGTAATCAGG+GGG - Chr2:3622367-3622386 MsG0280006575.01.T01:intron 45.0%
CCCCTACCAACAGAGTTAAA+GGG - Chr2:3621994-3622013 MsG0280006575.01.T01:intron 45.0%
GCCCTTTAACTCTGTTGGTA+GGG + Chr2:3621998-3622017 None:intergenic 45.0%
GTTTGGCCCTTTAACTCTGT+TGG + Chr2:3622003-3622022 None:intergenic 45.0%
TCAGCTTCAGCAAGCTGTTT+AGG + Chr2:3621655-3621674 None:intergenic 45.0%
TGACTAACGGTGTTTCCTCT+TGG + Chr2:3621828-3621847 None:intergenic 45.0%
! ATGTCTGGAACTTCACTCCT+TGG + Chr2:3621628-3621647 None:intergenic 45.0%
! CCCTTTAACTCTGTTGGTAG+GGG + Chr2:3621997-3622016 None:intergenic 45.0%
! CCTTTAACTCTGTTGGTAGG+GGG + Chr2:3621996-3622015 None:intergenic 45.0%
! CTTTAACTCTGTTGGTAGGG+GGG + Chr2:3621995-3622014 None:intergenic 45.0%
! GAGGTGCTTTCATCTTCCTT+AGG + Chr2:3621606-3621625 None:intergenic 45.0%
! GTGAAGAAGTGGAGTATCTG+GGG - Chr2:3621935-3621954 MsG0280006575.01.T01:intron 45.0%
! TGGTGCTGGAATGTTTGAGA+TGG - Chr2:3623291-3623310 MsG0280006575.01.T01:intron 45.0%
!! AAACAGCTTGCTGAAGCTGA+TGG - Chr2:3621655-3621674 MsG0280006575.01.T01:intron 45.0%
!! TCAGGAACTTTTGGGGAACA+TGG - Chr2:3623343-3623362 MsG0280006575.01.T01:intron 45.0%
!! ATATTATAATTCATATATTA+AGG - Chr2:3621555-3621574 MsG0280006575.01.T01:intron 5.0%
!!! ATATATTTTTTTTTTTTTGT+CGG + Chr2:3622595-3622614 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+CGG + Chr2:3622872-3622891 None:intergenic 5.0%
!!! TATGAATTTTTATATTTTTA+CGG + Chr2:3622816-3622835 None:intergenic 5.0%
CCCCCTACCAACAGAGTTAA+AGG - Chr2:3621993-3622012 MsG0280006575.01.T01:intron 50.0%
CCCCCTGATTACATCTTCCA+TGG + Chr2:3622370-3622389 None:intergenic 50.0%
GAAGATGTAATCAGGGGGGA+AGG - Chr2:3622372-3622391 MsG0280006575.01.T01:intron 50.0%
GAGATGGAAAAGGTGAAGGG+TGG - Chr2:3623307-3623326 MsG0280006575.01.T01:intron 50.0%
GGCCCTTTAACTCTGTTGGT+AGG + Chr2:3621999-3622018 None:intergenic 50.0%
GGTGGATCACCATATGGTTC+AGG - Chr2:3623325-3623344 MsG0280006575.01.T01:intron 50.0%
GTGAAGGGTGGATCACCATA+TGG - Chr2:3623319-3623338 MsG0280006575.01.T01:intron 50.0%
GTGGAGAAAAAGAAGCCAGC+AGG + Chr2:3621787-3621806 None:intergenic 50.0%
TCCACTGCTTCTCAAGGAAG+TGG - Chr2:3621802-3621821 MsG0280006575.01.T01:intron 50.0%
TTCTCAAGGAAGTGGCCAAG+AGG - Chr2:3621810-3621829 MsG0280006575.01.T01:intron 50.0%
! ATGTGTGGGCTCTAACCACT+AGG + Chr2:3621908-3621927 None:intergenic 50.0%
! TCTGGAACTTCACTCCTTGG+AGG + Chr2:3621625-3621644 None:intergenic 50.0%
!! ATTTAGGCTGGCTTCGCCAT+CGG - Chr2:3623138-3623157 MsG0280006575.01.T01:CDS 50.0%
!! GGAAGATGAAAGCACCTCCA+AGG - Chr2:3621608-3621627 MsG0280006575.01.T01:intron 50.0%
AAACAAGGGTGGGGTAGCCT+TGG + Chr2:3622406-3622425 None:intergenic 55.0%
AAGGGGGCTGCATCTGTAGA+AGG - Chr2:3621293-3621312 MsG0280006575.01.T01:three_prime_UTR 55.0%
ACACTTGCAGGAAAGCCTGC+TGG - Chr2:3621769-3621788 MsG0280006575.01.T01:intron 55.0%
GCCACTTCCTTGAGAAGCAG+TGG + Chr2:3621806-3621825 None:intergenic 55.0%
GGGGGAAGGGTAGTGTGCCA+AGG - Chr2:3622386-3622405 MsG0280006575.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 3621236 3623557 3621236 ID=MsG0280006575.01;Name=MsG0280006575.01
Chr2 mRNA 3621236 3623557 3621236 ID=MsG0280006575.01.T01;Parent=MsG0280006575.01;Name=MsG0280006575.01.T01;_AED=0.38;_eAED=0.38;_QI=0|1|0.66|1|1|1|3|98|198
Chr2 exon 3621236 3621565 3621236 ID=MsG0280006575.01.T01:exon:1754;Parent=MsG0280006575.01.T01
Chr2 exon 3622954 3623216 3622954 ID=MsG0280006575.01.T01:exon:1753;Parent=MsG0280006575.01.T01
Chr2 exon 3623456 3623557 3623456 ID=MsG0280006575.01.T01:exon:1752;Parent=MsG0280006575.01.T01
Chr2 CDS 3623456 3623557 3623456 ID=MsG0280006575.01.T01:cds;Parent=MsG0280006575.01.T01
Chr2 CDS 3622954 3623216 3622954 ID=MsG0280006575.01.T01:cds;Parent=MsG0280006575.01.T01
Chr2 CDS 3621334 3621565 3621334 ID=MsG0280006575.01.T01:cds;Parent=MsG0280006575.01.T01
Chr2 three_prime_UTR 3621236 3621333 3621236 ID=MsG0280006575.01.T01:three_prime_utr;Parent=MsG0280006575.01.T01
Gene Sequence

>MsG0280006575.01.T01

ATGTTTAGTTACCATTCTGTGTACGGACATGTTGAGAAGCTAGCTGAAGAGATTCTAAAGGGGGCTGCATCTGTAGAAGGAGTAGAAGCAAAACTCTGGCAGGTACCAGAAATATTGTCTGAAGAAATCCTAAGGAAGATGAAAGCACCTCCAAGGAGTGAAGTTCCAGACATTTCACCTAAACAGCTTGCTGAAGCTGATGGTTTTTTGTTTGGTTTTCCAGCAAGATATGGAATGATGTCTGCTCAATTCAAAGTATTTTTTGATGCAACTGGAAGTTTATGGAACAAACAAACACTTGCAGGAAAGCCTGCTGGCTTCTTTTTCTCCACTGCTTCTCAAGGAAGTGGCCAAGAGGAAACACCGTTTACATCTATTACTCAGCTTGTTCACCATGGTATGATTTTTGTACCTATTGGATACACATTTGGTGCTGGAATGTTTGAGATGGAAAAGGTGAAGGGTGGATCACCATATGGTTCAGGAACTTTTGGGGAACATGGAATAGGAGAACCTAGTGAGTTAGAATTGGCTCAAGCTTTTCATCAGGGAAAATACTTTGCTGGAATTGCAAAGAAGCTCAAAGGATCACAATGA

Protein sequence

>MsG0280006575.01.T01

MFSYHSVYGHVEKLAEEILKGAASVEGVEAKLWQVPEILSEEILRKMKAPPRSEVPDISPKQLAEADGFLFGFPARYGMMSAQFKVFFDATGSLWNKQTLAGKPAGFFFSTASQGSGQEETPFTSITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGSGTFGEHGIGEPSELELAQAFHQGKYFAGIAKKLKGSQ*