AlfalfaGEDB | MsG0280007822.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007822.01

KEGG: K13811
GO: GO:0004781
PFAM: PF01747 PF14306

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007822.01.T01	XP_013451165.1	80.085	236	13	1	32	233	192	427	9.37E-126	377

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007822.01.T01	Q43870	72.458	236	31	1	32	233	182	417	1.11E-117	349

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007822.01.T01	G7ZV13	80.085	236	13	1	32	233	192	427	4.48e-126	377

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048528.01	MsG0280007822.01	0.819834	9.431664e-53	7.338777e-50
MsG0080048777.01	MsG0280007822.01	0.808158	3.552846e-50	2.016619e-47
MsG0080048780.01	MsG0280007822.01	0.820786	5.707016e-53	4.559391e-50
MsG0080048845.01	MsG0280007822.01	0.817761	2.788242e-52	2.048672e-49
MsG0180001685.01	MsG0280007822.01	0.851304	9.685172e-61	1.951998e-57
MsG0180002902.01	MsG0280007822.01	0.807048	6.114750e-50	3.371415e-47
MsG0180003451.01	MsG0280007822.01	0.821297	4.351702e-53	3.526428e-50
MsG0180003730.01	MsG0280007822.01	0.844433	7.583311e-59	1.224027e-55
MsG0180004542.01	MsG0280007822.01	0.824759	6.781315e-54	6.063025e-51
MsG0180005064.01	MsG0280007822.01	0.803772	2.972510e-49	1.506616e-46
MsG0180005283.01	MsG0280007822.01	0.800045	1.732860e-48	7.988438e-46
MsG0180005760.01	MsG0280007822.01	0.820605	6.280339e-53	4.991994e-50
MsG0180005806.01	MsG0280007822.01	0.802723	4.899320e-49	2.417541e-46
MsG0280006848.01	MsG0280007822.01	0.811422	7.056828e-51	4.366453e-48
MsG0280007628.01	MsG0280007822.01	0.828266	9.892604e-55	9.783120e-52
MsG0280007754.01	MsG0280007822.01	0.845020	5.268021e-59	8.662792e-56
MsG0280007755.01	MsG0280007822.01	0.828177	1.039062e-54	1.024993e-51
MsG0280007822.01	MsG0280009431.01	0.809411	1.917797e-50	1.125237e-47
MsG0280007822.01	MsG0380013499.01	0.824951	6.109261e-54	5.492074e-51
MsG0280007822.01	MsG0380013530.01	0.814008	1.917385e-51	1.271620e-48
MsG0280007822.01	MsG0380014411.01	0.809533	1.805002e-50	1.062483e-47
MsG0280007822.01	MsG0380015501.01	0.834280	3.284171e-56	3.879154e-53
MsG0280007822.01	MsG0380017727.01	0.825660	4.153741e-54	3.810067e-51
MsG0280007822.01	MsG0480018323.01	0.821140	4.730147e-53	3.816582e-50
MsG0280007822.01	MsG0480018324.01	0.804804	1.812094e-49	9.432316e-47
MsG0280007822.01	MsG0480018631.01	0.806893	6.592649e-50	3.620351e-47
MsG0280007822.01	MsG0480018844.01	0.827389	1.606953e-54	1.549384e-51
MsG0280007822.01	MsG0480020229.01	0.816350	5.785036e-52	4.089546e-49
MsG0280007822.01	MsG0480021597.01	0.834363	3.130244e-56	3.706510e-53
MsG0280007822.01	MsG0480021795.01	0.841309	5.137057e-58	7.517236e-55
MsG0280007822.01	MsG0480021893.01	0.808719	2.696880e-50	1.553281e-47
MsG0280007822.01	MsG0480023166.01	0.810775	9.749074e-51	5.929846e-48
MsG0280007822.01	MsG0480023422.01	0.826771	2.259598e-54	2.139216e-51
MsG0280007822.01	MsG0480023502.01	0.817802	2.730138e-52	2.008207e-49
MsG0280007822.01	MsG0480023845.01	0.812906	3.348574e-51	2.155493e-48
MsG0280007822.01	MsG0580024759.01	0.811718	6.084188e-51	3.794089e-48
MsG0280007822.01	MsG0580025373.01	0.801190	1.011970e-48	4.802722e-46
MsG0280007822.01	MsG0580027410.01	0.800299	1.538296e-48	7.137801e-46
MsG0280007822.01	MsG0580028209.01	0.802809	4.704047e-49	2.326306e-46
MsG0280007822.01	MsG0680031715.01	0.800928	1.144923e-48	5.397958e-46
MsG0280007822.01	MsG0680032520.01	0.810489	1.123810e-50	6.783298e-48
MsG0280007822.01	MsG0680035619.01	0.803218	3.872115e-49	1.934842e-46
MsG0280007822.01	MsG0780038115.01	0.814618	1.405520e-51	9.476971e-49
MsG0280007822.01	MsG0780039988.01	0.807448	5.030272e-50	2.802526e-47
MsG0280007822.01	MsG0780040319.01	0.800009	1.761744e-48	8.114272e-46
MsG0280007822.01	MsG0780041706.01	0.811146	8.098873e-51	4.974811e-48
MsG0280007822.01	MsG0880042043.01	0.800617	1.324803e-48	6.196778e-46
MsG0280007822.01	MsG0880043259.01	0.804253	2.360827e-49	1.211421e-46
MsG0280007822.01	MsG0880043278.01	0.801744	7.792159e-49	3.750039e-46
MsG0280007822.01	MsG0880043913.01	0.800601	1.335324e-48	6.243388e-46
MsG0280007822.01	MsG0880044488.01	0.800340	1.509045e-48	7.009368e-46
MsG0280007822.01	MsG0880045261.01	0.812715	3.688114e-51	2.362113e-48
MsG0280007822.01	MsG0880045412.01	0.803930	2.754955e-49	1.402174e-46
MsG0280007822.01	MsG0880045709.01	0.829019	6.505476e-55	6.576163e-52
MsG0280007822.01	MsG0880045710.01	0.804605	1.993496e-49	1.032283e-46
MsG0280007822.01	MsG0880046025.01	0.805794	1.124134e-49	6.002039e-47
MsG0280007822.01	MsG0880046252.01	0.809137	2.195379e-50	1.278710e-47
MsG0280007822.01	MsG0880046288.01	0.801024	1.094537e-48	5.173133e-46
MsG0280007822.01	MsG0880047157.01	0.809123	2.210247e-50	1.286887e-47
MsG0280007822.01	MsG0880047161.01	0.810888	9.215088e-51	5.622169e-48
MsG0280007822.01	MsG0880047669.01	0.808085	3.682683e-50	2.086189e-47
MsG0280007822.01	MsG0880047670.01	0.809370	1.956349e-50	1.146603e-47
MsG0280007822.01	MsG0880047770.01	0.809293	2.032684e-50	1.188869e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007822.01.T01	MTR_6g016335	80.085	236	13	1	32	233	192	427	1.14e-129	377
MsG0280007822.01.T01	MTR_1g102550	67.797	236	42	1	32	233	170	405	8.10e-108	321
MsG0280007822.01.T01	MTR_6g016325	81.395	43	8	0	191	233	30	72	1.15e-15	72.4
MsG0280007822.01.T01	MTR_6g016320	78.125	32	7	0	161	192	41	72	1.13e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007822.01.T01	AT1G19920	72.458	236	31	1	32	233	182	417	1.13e-118	349
MsG0280007822.01.T01	AT3G22890	67.797	236	42	1	32	233	168	403	1.62e-107	320
MsG0280007822.01.T01	AT5G43780	67.797	236	42	1	32	233	172	407	3.67e-106	317
MsG0280007822.01.T01	AT4G14680	67.373	236	43	1	32	233	170	405	5.60e-106	316
MsG0280007822.01.T01	AT4G14680	67.373	236	43	1	32	233	170	405	2.44e-105	316

Find 71 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCAGCTGGAAATTGGCTTAT+TGG	0.205900	2:-21294624	MsG0280007822.01.T01:CDS
AGAGGATGAAGCAATAAAAT+TGG	0.269794	2:+21294396	None:intergenic
TCATTGCTCCAGCTGGAAAT+TGG	0.285849	2:-21294632	MsG0280007822.01.T01:CDS
TTAACAAGGCATGACCATTA+TGG	0.305379	2:+21294463	None:intergenic
TTGGCTTATTGGAGGAGATT+TGG	0.324311	2:-21294613	MsG0280007822.01.T01:CDS
TCTTCAACTCAGTGTATGTT+TGG	0.334179	2:+21295176	None:intergenic
TGAAACTTCATCACGATTCA+TGG	0.334800	2:-21295314	MsG0280007822.01.T01:intron
GAATTCTTCACAAAGTTGTT+TGG	0.335278	2:+21294536	None:intergenic
AATTCTTCACAAAGTTGTTT+GGG	0.377029	2:+21294537	None:intergenic
AGACCATCATTGTATTTGAT+AGG	0.381497	2:+21294579	None:intergenic
GTTTGGATTGACGATAAGTT+AGG	0.387750	2:+21295193	None:intergenic
CTACACGGTGTTTCTGAAGC+TGG	0.390590	2:-21293020	MsG0280007822.01.T01:CDS
TGCCTTTCAGTTAAGAAATC+CGG	0.399099	2:-21294487	MsG0280007822.01.T01:CDS
ATCCTGGAGCAGTTGTTCCC+CGG	0.416187	2:+21294673	None:intergenic
TCCTCAACGTAAGGCAATCC+TGG	0.418206	2:+21294657	None:intergenic
ACGATGTTCCGTTAGATGTC+AGG	0.428955	2:-21294353	MsG0280007822.01.T01:CDS
TACACGGTGTTTCTGAAGCT+GGG	0.436485	2:-21293019	MsG0280007822.01.T01:CDS
GAGGAGTTGCTTCTTTCTAA+AGG	0.437852	2:-21292986	MsG0280007822.01.T01:CDS
TTATTGCTTCATCCTCTTGG+AGG	0.441232	2:-21294390	MsG0280007822.01.T01:CDS
GGGTCATCCAACTGAGAAAC+GGG	0.451624	2:-21293641	MsG0280007822.01.T01:CDS
GGTGCCAACTTCTATATTGT+TGG	0.465237	2:-21293682	MsG0280007822.01.T01:CDS
TGGTTGCGATCCCACTGGTA+TGG	0.480052	2:-21293662	MsG0280007822.01.T01:CDS
GACTTGTATGACCCTGATCA+TGG	0.490265	2:-21293619	MsG0280007822.01.T01:CDS
TACAAGTCCCGTTTCTCAGT+TGG	0.492506	2:+21293634	None:intergenic
ATAGACGGTGTCACGGAAGA+TGG	0.497068	2:+21292950	None:intergenic
TGGGTCATCCAACTGAGAAA+CGG	0.499633	2:-21293642	MsG0280007822.01.T01:CDS
TCCTGGAGCAGTTGTTCCCC+GGG	0.500398	2:+21294674	None:intergenic
GCAATACTACTTACCCTGAA+TGG	0.502969	2:+21293547	None:intergenic
AAACCTATCAAATACAATGA+TGG	0.508307	2:-21294582	MsG0280007822.01.T01:CDS
TTAAGAAATCCGGTCCATAA+TGG	0.512744	2:-21294477	MsG0280007822.01.T01:CDS
GCTGGAAATTGGCTTATTGG+AGG	0.523653	2:-21294621	MsG0280007822.01.T01:CDS
ACCCGGGGAACAACTGCTCC+AGG	0.527573	2:-21294675	MsG0280007822.01.T01:CDS
ATGATGGTCTTGATAACTAC+AGG	0.527746	2:-21294566	MsG0280007822.01.T01:CDS
AAAGGTGCGTAGCATGGTCC+TGG	0.534288	2:-21293593	MsG0280007822.01.T01:CDS
GAGGAGGTCATTGCTCCAGC+TGG	0.544655	2:-21294639	MsG0280007822.01.T01:CDS
GCAACCAACAATATAGAAGT+TGG	0.545113	2:+21293678	None:intergenic
TCCAGGATTGCCTTACGTTG+AGG	0.546081	2:-21294658	MsG0280007822.01.T01:CDS
ACGATAAGTTAGGCAAATCA+TGG	0.550138	2:+21295203	None:intergenic
GACCGGATTTCTTAACTGAA+AGG	0.552248	2:+21294485	None:intergenic
GGTTGCGATCCCACTGGTAT+GGG	0.557915	2:-21293661	MsG0280007822.01.T01:CDS
TGTTTAAGCTTCTTGAGACC+AGG	0.561457	2:+21293575	None:intergenic
ATTGTTGGTTGCGATCCCAC+TGG	0.562073	2:-21293667	MsG0280007822.01.T01:CDS
CCAATAAGCCAATTTCCAGC+TGG	0.563923	2:+21294624	None:intergenic
AGAAAGAATAGCTAGAACCC+GGG	0.568732	2:-21294691	MsG0280007822.01.T01:CDS
GCAAAGTCACGGATAAATGC+AGG	0.569036	2:-21293703	MsG0280007822.01.T01:intron
TGCTCCATCCTGACATCTAA+CGG	0.570183	2:+21294345	None:intergenic
TAGACGGTGTCACGGAAGAT+GGG	0.570332	2:+21292951	None:intergenic
AGAAAGCTTTAGCACGGCTA+GGG	0.581287	2:+21293081	None:intergenic
TAGAAAGCTTTAGCACGGCT+AGG	0.584667	2:+21293080	None:intergenic
TGACACTAAGGTAAACAAGA+TGG	0.598361	2:-21293113	MsG0280007822.01.T01:CDS
TCGTCAACGTCTATTAGACA+TGG	0.599665	2:-21294430	MsG0280007822.01.T01:CDS
AAGAAAGAATAGCTAGAACC+CGG	0.600176	2:-21294692	MsG0280007822.01.T01:CDS
GCAATGACCTCCTCAACGTA+AGG	0.607325	2:+21294648	None:intergenic
GGTGGCAGCTTATGACACTA+AGG	0.610562	2:-21293125	MsG0280007822.01.T01:CDS
AAGGCATGACCATTATGGAC+CGG	0.612091	2:+21294468	None:intergenic
CAGGATGGAGCAACATAGCA+AGG	0.622612	2:-21294334	MsG0280007822.01.T01:intron
ACACGGTGTTTCTGAAGCTG+GGG	0.623427	2:-21293018	MsG0280007822.01.T01:CDS
AGGATTGCCTTACGTTGAGG+AGG	0.626411	2:-21294655	MsG0280007822.01.T01:CDS
AACTTTGTGAAGAATTCGAT+AGG	0.627698	2:-21294530	MsG0280007822.01.T01:CDS
ACGAGTATCATTCATTAACA+AGG	0.632393	2:+21294449	None:intergenic
TGAAGACATAGACGGTGTCA+CGG	0.636546	2:+21292943	None:intergenic
ACGTGTAGAAAGCTTTAGCA+CGG	0.651162	2:+21293075	None:intergenic
GTTGGATGACCCATACCAGT+GGG	0.656888	2:+21293652	None:intergenic
TCCTCTTGGAGGTTTCACAA+AGG	0.657993	2:-21294379	MsG0280007822.01.T01:CDS
CGTCAACGTCTATTAGACAT+GGG	0.666925	2:-21294429	MsG0280007822.01.T01:CDS
GAAAGAATAGCTAGAACCCG+GGG	0.667189	2:-21294690	MsG0280007822.01.T01:CDS
TGTTCCGTTAGATGTCAGGA+TGG	0.672939	2:-21294349	MsG0280007822.01.T01:CDS
GAAGCTGGGGAAAACAGAAG+AGG	0.673714	2:-21293005	MsG0280007822.01.T01:CDS
AGCTACTTTGAAGACATAGA+CGG	0.674527	2:+21292935	None:intergenic
AGTTGGATGACCCATACCAG+TGG	0.682696	2:+21293651	None:intergenic
ACCTTTGTGAAACCTCCAAG+AGG	0.706301	2:+21294378	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTAAACATTGATTATTAT+AGG	+	Chr2:21294191-21294210	None:intergenic	10.0%
!!	AATGTTTAAAAAATTGACCT+TGG	-	Chr2:21294200-21294219	MsG0280007822.01.T01:intron	20.0%
!!	ATACACATATATCTTATTGT+TGG	-	Chr2:21294971-21294990	MsG0280007822.01.T01:intron	20.0%
!!	ATGTTAAAAAATGAACAAGA+TGG	+	Chr2:21293414-21293433	None:intergenic	20.0%
!!	CAATGAAATTTGTACAAAAA+TGG	+	Chr2:21294950-21294969	None:intergenic	20.0%
!!	GCTATATGAAAAAAAAATGA+TGG	+	Chr2:21293957-21293976	None:intergenic	20.0%
!!	TACACATATATCTTATTGTT+GGG	-	Chr2:21294972-21294991	MsG0280007822.01.T01:intron	20.0%
!!!	TACGGTTAATTTTTAAAGAT+TGG	-	Chr2:21294400-21294419	MsG0280007822.01.T01:CDS	20.0%
!	AAACCTATCAAATACAATGA+TGG	-	Chr2:21293677-21293696	MsG0280007822.01.T01:CDS	25.0%
!	AAAGAAATTGAACTATGACT+CGG	+	Chr2:21293305-21293324	None:intergenic	25.0%
!	AATTCTTCACAAAGTTGTTT+GGG	+	Chr2:21293725-21293744	None:intergenic	25.0%
!	ACACATATATCTTATTGTTG+GGG	-	Chr2:21294973-21294992	MsG0280007822.01.T01:intron	25.0%
!	ACTTTGTATACTAAAGAACA+AGG	+	Chr2:21295018-21295037	None:intergenic	25.0%
!	CATATAAGATTGAAAATCGT+AGG	+	Chr2:21293192-21293211	None:intergenic	25.0%
!	GATTATAATAGCATGTGATT+TGG	+	Chr2:21294858-21294877	None:intergenic	25.0%
!	GTAATATAAAATGGCAAACA+AGG	+	Chr2:21295113-21295132	None:intergenic	25.0%
!	TCACATGCTATTATAATCTT+CGG	-	Chr2:21294860-21294879	MsG0280007822.01.T01:intron	25.0%
!	TGGATAAAAGAACAAATGAA+CGG	+	Chr2:21294258-21294277	None:intergenic	25.0%
!	TTCTTTAAACTACTCAAACT+AGG	-	Chr2:21293319-21293338	MsG0280007822.01.T01:intron	25.0%
!!	ATTTTGAATTACAATGGCTA+TGG	-	Chr2:21293439-21293458	MsG0280007822.01.T01:intron	25.0%
!!	CAACTTATCAGCAAAATTTT+AGG	+	Chr2:21295069-21295088	None:intergenic	25.0%
!!	CTAAAATTTTGCTGATAAGT+TGG	-	Chr2:21295067-21295086	MsG0280007822.01.T01:intron	25.0%
!!	GAAATTCTTTTCTTGTTCAT+AGG	-	Chr2:21294439-21294458	MsG0280007822.01.T01:CDS	25.0%
!!!	TGCAATTTTAGAAATTGAAC+CGG	-	Chr2:21293259-21293278	MsG0280007822.01.T01:intron	25.0%
!!!	TGTTTGCCATTTTATATTAC+AGG	-	Chr2:21295113-21295132	MsG0280007822.01.T01:intron	25.0%
!!!	TTGTTCATTTTTTAACATGC+TGG	-	Chr2:21293416-21293435	MsG0280007822.01.T01:intron	25.0%
	AACTTTGTGAAGAATTCGAT+AGG	-	Chr2:21293729-21293748	MsG0280007822.01.T01:intron	30.0%
	AATAATCAGTAGACAGTTCT+TGG	+	Chr2:21294307-21294326	None:intergenic	30.0%
	AATCTCAGTCATGGTTTAAT+TGG	-	Chr2:21293383-21293402	MsG0280007822.01.T01:intron	30.0%
	ACGAGTATCATTCATTAACA+AGG	+	Chr2:21293813-21293832	None:intergenic	30.0%
	AGACCATCATTGTATTTGAT+AGG	+	Chr2:21293683-21293702	None:intergenic	30.0%
	AGAGGATGAAGCAATAAAAT+TGG	+	Chr2:21293866-21293885	None:intergenic	30.0%
	CACAAACAAGAAAGATCTAT+AGG	+	Chr2:21294380-21294399	None:intergenic	30.0%
	CTGCAAAGAAGTGAAATTAA+TGG	+	Chr2:21293521-21293540	None:intergenic	30.0%
	GAAGTGAAATTAATGGTCAT+TGG	+	Chr2:21293514-21293533	None:intergenic	30.0%
	GAATTCTTCACAAAGTTGTT+TGG	+	Chr2:21293726-21293745	None:intergenic	30.0%
	TAAAAAATTGACCTTGGAAG+TGG	-	Chr2:21294206-21294225	MsG0280007822.01.T01:intron	30.0%
	TTATTCGAGAAGTTAGATTG+CGG	-	Chr2:21294322-21294341	MsG0280007822.01.T01:intron	30.0%
!	AGATCTTTCTTGTTTGTGTA+CGG	-	Chr2:21294382-21294401	MsG0280007822.01.T01:CDS	30.0%
!	ATTTTATTGCTTCATCCTCT+TGG	-	Chr2:21293866-21293885	MsG0280007822.01.T01:intron	30.0%
!	CTTAAACATTTTGCCATTCA+GGG	-	Chr2:21294699-21294718	MsG0280007822.01.T01:CDS	30.0%
!	TGCTGGATTTTGAATTACAA+TGG	-	Chr2:21293433-21293452	MsG0280007822.01.T01:intron	30.0%
!!	TAATAGCATGTGATTTGGTT+CGG	+	Chr2:21294853-21294872	None:intergenic	30.0%
!!	TTGACTTGGATCTGTTTATA+AGG	+	Chr2:21294792-21294811	None:intergenic	30.0%
!!!	GTTCACTTTTATCGATTTTG+AGG	+	Chr2:21294902-21294921	None:intergenic	30.0%
!!!	TTGCCATTTTATATTACAGG+TGG	-	Chr2:21295116-21295135	MsG0280007822.01.T01:intron	30.0%
	AAAAATGGACAGCATTGTGA+AGG	+	Chr2:21294935-21294954	None:intergenic	35.0%
	AAAATGGACAGCATTGTGAA+GGG	+	Chr2:21294934-21294953	None:intergenic	35.0%
	AAGAAAGAATAGCTAGAACC+CGG	-	Chr2:21293567-21293586	MsG0280007822.01.T01:CDS	35.0%
	AATACTGTGCTATAGAGTAG+CGG	-	Chr2:21294001-21294020	MsG0280007822.01.T01:intron	35.0%
	ACGATAAGTTAGGCAAATCA+TGG	+	Chr2:21293059-21293078	None:intergenic	35.0%
	CAAGAAAGATCTATAGGTCA+TGG	+	Chr2:21294374-21294393	None:intergenic	35.0%
	CTATAAGTAAACTCCTGTCA+TGG	-	Chr2:21293462-21293481	MsG0280007822.01.T01:intron	35.0%
	CTGCCACCTGTAATATAAAA+TGG	+	Chr2:21295122-21295141	None:intergenic	35.0%
	GCAACCAACAATATAGAAGT+TGG	+	Chr2:21294584-21294603	None:intergenic	35.0%
	GCGATGGAAATATAGAACAA+TGG	+	Chr2:21294498-21294517	None:intergenic	35.0%
	GTTTGGATTGACGATAAGTT+AGG	+	Chr2:21293069-21293088	None:intergenic	35.0%
	TATAGAACAATGGTTGTCTC+TGG	+	Chr2:21294488-21294507	None:intergenic	35.0%
	TCTTCAACTCAGTGTATGTT+TGG	+	Chr2:21293086-21293105	None:intergenic	35.0%
	TGAAACTTCATCACGATTCA+TGG	-	Chr2:21292945-21292964	MsG0280007822.01.T01:CDS	35.0%
	TGACACTAAGGTAAACAAGA+TGG	-	Chr2:21295146-21295165	MsG0280007822.01.T01:intron	35.0%
	TGCCTTTCAGTTAAGAAATC+CGG	-	Chr2:21293772-21293791	MsG0280007822.01.T01:intron	35.0%
	TGGTTAAACTGCTTTATACC+AGG	+	Chr2:21294354-21294373	None:intergenic	35.0%
	TTAACAAGGCATGACCATTA+TGG	+	Chr2:21293799-21293818	None:intergenic	35.0%
	TTAAGAAATCCGGTCCATAA+TGG	-	Chr2:21293782-21293801	MsG0280007822.01.T01:intron	35.0%
	TTATTGTTGGGGATGACAAA+TGG	-	Chr2:21294984-21295003	MsG0280007822.01.T01:intron	35.0%
!	ATGATGGTCTTGATAACTAC+AGG	-	Chr2:21293693-21293712	MsG0280007822.01.T01:CDS	35.0%
!	GCTTAAACATTTTGCCATTC+AGG	-	Chr2:21294698-21294717	MsG0280007822.01.T01:CDS	35.0%
!	TTGTCAAATAGCAGCTTTAG+CGG	-	Chr2:21294073-21294092	MsG0280007822.01.T01:intron	35.0%
!!	GCATCTGAAGTTTTTCTACA+CGG	-	Chr2:21295224-21295243	MsG0280007822.01.T01:intron	35.0%
	AAACTCAAAGACACCATGAC+AGG	+	Chr2:21293478-21293497	None:intergenic	40.0%
	AAATGGACAGCATTGTGAAG+GGG	+	Chr2:21294933-21294952	None:intergenic	40.0%
	AGAAAGAATAGCTAGAACCC+GGG	-	Chr2:21293568-21293587	MsG0280007822.01.T01:CDS	40.0%
	ATTGTCTCCGGTCAGTTATT+TGG	+	Chr2:21293366-21293385	None:intergenic	40.0%
	CATCGCCTATGTATTATGCA+GGG	-	Chr2:21294512-21294531	MsG0280007822.01.T01:CDS	40.0%
	CGTCAACGTCTATTAGACAT+GGG	-	Chr2:21293830-21293849	MsG0280007822.01.T01:intron	40.0%
	GACCGGATTTCTTAACTGAA+AGG	+	Chr2:21293777-21293796	None:intergenic	40.0%
	GAGGAGTTGCTTCTTTCTAA+AGG	-	Chr2:21295273-21295292	MsG0280007822.01.T01:intron	40.0%
	GATCAAGAACTCCATCTTCT+AGG	+	Chr2:21294466-21294485	None:intergenic	40.0%
	GCAATACTACTTACCCTGAA+TGG	+	Chr2:21294715-21294734	None:intergenic	40.0%
	GGTGCCAACTTCTATATTGT+TGG	-	Chr2:21294577-21294596	MsG0280007822.01.T01:CDS	40.0%
	GTTACTCCCCATTGAAATCA+GGG	-	Chr2:21293027-21293046	MsG0280007822.01.T01:CDS	40.0%
	TACAATGGCATGCAAAGTCA+CGG	-	Chr2:21294545-21294564	MsG0280007822.01.T01:CDS	40.0%
	TCGTCAACGTCTATTAGACA+TGG	-	Chr2:21293829-21293848	MsG0280007822.01.T01:intron	40.0%
	TGACCCTGATCATGGAAAAA+AGG	-	Chr2:21294648-21294667	MsG0280007822.01.T01:CDS	40.0%
	TGTTACTCCCCATTGAAATC+AGG	-	Chr2:21293026-21293045	MsG0280007822.01.T01:CDS	40.0%
	TGTTCATAGGTCCTAGAAGA+TGG	-	Chr2:21294452-21294471	MsG0280007822.01.T01:CDS	40.0%
	TGTTTAAGCTTCTTGAGACC+AGG	+	Chr2:21294687-21294706	None:intergenic	40.0%
	TTAACCAGTGTTGTCAATCG+TGG	+	Chr2:21294153-21294172	None:intergenic	40.0%
	TTATTGCTTCATCCTCTTGG+AGG	-	Chr2:21293869-21293888	MsG0280007822.01.T01:intron	40.0%
	TTATTTGGGAGGTTCAACTG+CGG	+	Chr2:21293351-21293370	None:intergenic	40.0%
	TTCAACATGTCGAAACTCAC+TGG	+	Chr2:21294278-21294297	None:intergenic	40.0%
	TTGGCTTATTGGAGGAGATT+TGG	-	Chr2:21293646-21293665	MsG0280007822.01.T01:CDS	40.0%
	TTGTCTCCGGTCAGTTATTT+GGG	+	Chr2:21293365-21293384	None:intergenic	40.0%
!	ACGTGTAGAAAGCTTTAGCA+CGG	+	Chr2:21295187-21295206	None:intergenic	40.0%
!	GAAATTGAACTATGACTCGG+AGG	+	Chr2:21293302-21293321	None:intergenic	40.0%
!!	CGTTGAATTGCTGTTTGACT+TGG	+	Chr2:21294806-21294825	None:intergenic	40.0%
!!!	GCACCTTTTTTCCATGATCA+GGG	+	Chr2:21294654-21294673	None:intergenic	40.0%
	AAGGCATGACCATTATGGAC+CGG	+	Chr2:21293794-21293813	None:intergenic	45.0%
	ACCATGACTGAGATTGTCTC+CGG	+	Chr2:21293378-21293397	None:intergenic	45.0%
	ACCTTTGTGAAACCTCCAAG+AGG	+	Chr2:21293884-21293903	None:intergenic	45.0%
	ACGATGTTCCGTTAGATGTC+AGG	-	Chr2:21293906-21293925	MsG0280007822.01.T01:intron	45.0%
	ATCACGATTCATGGTGAGAG+TGG	-	Chr2:21292954-21292973	MsG0280007822.01.T01:CDS	45.0%
	CAATCCACGATTGACAACAC+TGG	-	Chr2:21294146-21294165	MsG0280007822.01.T01:intron	45.0%
	CCAATAAGCCAATTTCCAGC+TGG	+	Chr2:21293638-21293657	None:intergenic	45.0%
	CCATCGCCTATGTATTATGC+AGG	-	Chr2:21294511-21294530	MsG0280007822.01.T01:CDS	45.0%
	CCTGCATAATACATAGGCGA+TGG	+	Chr2:21294514-21294533	None:intergenic	45.0%
	GAAAGAATAGCTAGAACCCG+GGG	-	Chr2:21293569-21293588	MsG0280007822.01.T01:CDS	45.0%
	GAACCTCCCAAATAACTGAC+CGG	-	Chr2:21293356-21293375	MsG0280007822.01.T01:intron	45.0%
	GACTTGTATGACCCTGATCA+TGG	-	Chr2:21294640-21294659	MsG0280007822.01.T01:CDS	45.0%
	GCAAAGTCACGGATAAATGC+AGG	-	Chr2:21294556-21294575	MsG0280007822.01.T01:CDS	45.0%
	GCATGCCATTGTACTTCAGT+TGG	+	Chr2:21294538-21294557	None:intergenic	45.0%
	GTTGGCCCTGCATAATACAT+AGG	+	Chr2:21294520-21294539	None:intergenic	45.0%
	TACAAGTCCCGTTTCTCAGT+TGG	+	Chr2:21294628-21294647	None:intergenic	45.0%
	TCATTGCTCCAGCTGGAAAT+TGG	-	Chr2:21293627-21293646	MsG0280007822.01.T01:CDS	45.0%
	TCCTCTTGGAGGTTTCACAA+AGG	-	Chr2:21293880-21293899	MsG0280007822.01.T01:intron	45.0%
	TGCTCCATCCTGACATCTAA+CGG	+	Chr2:21293917-21293936	None:intergenic	45.0%
	TGGGTCATCCAACTGAGAAA+CGG	-	Chr2:21294617-21294636	MsG0280007822.01.T01:CDS	45.0%
	TGTTCCGTTAGATGTCAGGA+TGG	-	Chr2:21293910-21293929	MsG0280007822.01.T01:intron	45.0%
	TTGCAGTTCAACCACTTCCA+AGG	+	Chr2:21294220-21294239	None:intergenic	45.0%
!	AGAAAGCTTTAGCACGGCTA+GGG	+	Chr2:21295181-21295200	None:intergenic	45.0%
!	CACGTTTTTGTGCAGATCTG+AGG	-	Chr2:21295202-21295221	MsG0280007822.01.T01:CDS	45.0%
!	CCAGCTGGAAATTGGCTTAT+TGG	-	Chr2:21293635-21293654	MsG0280007822.01.T01:CDS	45.0%
!	GCTGGAAATTGGCTTATTGG+AGG	-	Chr2:21293638-21293657	MsG0280007822.01.T01:CDS	45.0%
!	GGTCTTGTCAGTTTGATGTC+CGG	+	Chr2:21293281-21293300	None:intergenic	45.0%
!	GTGTTGTCAATCGTGGATTG+CGG	+	Chr2:21294146-21294165	None:intergenic	45.0%
!	TAGAAAGCTTTAGCACGGCT+AGG	+	Chr2:21295182-21295201	None:intergenic	45.0%
!	TGAAGACATAGACGGTGTCA+CGG	+	Chr2:21295319-21295338	None:intergenic	45.0%
!	TGGAAAAAAGGTGCGTAGCA+TGG	-	Chr2:21294660-21294679	MsG0280007822.01.T01:CDS	45.0%
!!	GTTAGATTGCGGTTTTGACC+TGG	-	Chr2:21294333-21294352	MsG0280007822.01.T01:intron	45.0%
!!	TACACGGTGTTTCTGAAGCT+GGG	-	Chr2:21295240-21295259	MsG0280007822.01.T01:intron	45.0%
!!!	CGCACCTTTTTTCCATGATC+AGG	+	Chr2:21294655-21294674	None:intergenic	45.0%
	ACCGGAGACAATCTCAGTCA+TGG	-	Chr2:21293374-21293393	MsG0280007822.01.T01:intron	50.0%
	ACTCCCCATTGAAATCAGGG+TGG	-	Chr2:21293030-21293049	MsG0280007822.01.T01:CDS	50.0%
	AGGATTGCCTTACGTTGAGG+AGG	-	Chr2:21293604-21293623	MsG0280007822.01.T01:CDS	50.0%
	AGTTGGATGACCCATACCAG+TGG	+	Chr2:21294611-21294630	None:intergenic	50.0%
	CAGGATGGAGCAACATAGCA+AGG	-	Chr2:21293925-21293944	MsG0280007822.01.T01:intron	50.0%
	CAGGGCCAACTGAAGTACAA+TGG	-	Chr2:21294530-21294549	MsG0280007822.01.T01:CDS	50.0%
	CTCCCCATTGAAATCAGGGT+GGG	-	Chr2:21293031-21293050	MsG0280007822.01.T01:CDS	50.0%
	GAAGCTGGGGAAAACAGAAG+AGG	-	Chr2:21295254-21295273	MsG0280007822.01.T01:intron	50.0%
	GCAATGACCTCCTCAACGTA+AGG	+	Chr2:21293614-21293633	None:intergenic	50.0%
	GGGTCATCCAACTGAGAAAC+GGG	-	Chr2:21294618-21294637	MsG0280007822.01.T01:CDS	50.0%
	GGTGGCAGCTTATGACACTA+AGG	-	Chr2:21295134-21295153	MsG0280007822.01.T01:intron	50.0%
	GTGCCCACCCTGATTTCAAT+GGG	+	Chr2:21293037-21293056	None:intergenic	50.0%
	GTTGGATGACCCATACCAGT+GGG	+	Chr2:21294610-21294629	None:intergenic	50.0%
	TCCAGGATTGCCTTACGTTG+AGG	-	Chr2:21293601-21293620	MsG0280007822.01.T01:CDS	50.0%
	TCCTCAACGTAAGGCAATCC+TGG	+	Chr2:21293605-21293624	None:intergenic	50.0%
	TCTCCGGTCAGTTATTTGGG+AGG	+	Chr2:21293362-21293381	None:intergenic	50.0%
	TGCCCACCCTGATTTCAATG+GGG	+	Chr2:21293036-21293055	None:intergenic	50.0%
!	ATTGTTGGTTGCGATCCCAC+TGG	-	Chr2:21294592-21294611	MsG0280007822.01.T01:CDS	50.0%
!!	ACACGGTGTTTCTGAAGCTG+GGG	-	Chr2:21295241-21295260	MsG0280007822.01.T01:intron	50.0%
!!	ATAGACGGTGTCACGGAAGA+TGG	+	Chr2:21295312-21295331	None:intergenic	50.0%
!!	CTACACGGTGTTTCTGAAGC+TGG	-	Chr2:21295239-21295258	MsG0280007822.01.T01:intron	50.0%
!!	TAGACGGTGTCACGGAAGAT+GGG	+	Chr2:21295311-21295330	None:intergenic	50.0%
	ATCCTGGAGCAGTTGTTCCC+CGG	+	Chr2:21293589-21293608	None:intergenic	55.0%
	GGTGCCCACCCTGATTTCAA+TGG	+	Chr2:21293038-21293057	None:intergenic	55.0%
	GGTTGCGATCCCACTGGTAT+GGG	-	Chr2:21294598-21294617	MsG0280007822.01.T01:CDS	55.0%
	TGGTTGCGATCCCACTGGTA+TGG	-	Chr2:21294597-21294616	MsG0280007822.01.T01:CDS	55.0%
!	AAAGGTGCGTAGCATGGTCC+TGG	-	Chr2:21294666-21294685	MsG0280007822.01.T01:CDS	55.0%
	GAGGAGGTCATTGCTCCAGC+TGG	-	Chr2:21293620-21293639	MsG0280007822.01.T01:CDS	60.0%
	TCCTGGAGCAGTTGTTCCCC+GGG	+	Chr2:21293588-21293607	None:intergenic	60.0%
	ACCCGGGGAACAACTGCTCC+AGG	-	Chr2:21293584-21293603	MsG0280007822.01.T01:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	21292937	21295344	21292937	ID=MsG0280007822.01;Name=MsG0280007822.01
Chr2	mRNA	21292937	21295344	21292937	ID=MsG0280007822.01.T01;Parent=MsG0280007822.01;Name=MsG0280007822.01.T01;_AED=0.50;_eAED=0.65;_QI=0\|0\|0\|1\|1\|1\|5\|0\|288
Chr2	exon	21295315	21295344	21295315	ID=MsG0280007822.01.T01:exon:5132;Parent=MsG0280007822.01.T01
Chr2	exon	21295172	21295233	21295172	ID=MsG0280007822.01.T01:exon:5131;Parent=MsG0280007822.01.T01
Chr2	exon	21294335	21294740	21294335	ID=MsG0280007822.01.T01:exon:5130;Parent=MsG0280007822.01.T01
Chr2	exon	21293561	21293719	21293561	ID=MsG0280007822.01.T01:exon:5129;Parent=MsG0280007822.01.T01
Chr2	exon	21292937	21293146	21292937	ID=MsG0280007822.01.T01:exon:5128;Parent=MsG0280007822.01.T01
Chr2	CDS	21295315	21295344	21295315	ID=MsG0280007822.01.T01:cds;Parent=MsG0280007822.01.T01
Chr2	CDS	21295172	21295233	21295172	ID=MsG0280007822.01.T01:cds;Parent=MsG0280007822.01.T01
Chr2	CDS	21294335	21294740	21294335	ID=MsG0280007822.01.T01:cds;Parent=MsG0280007822.01.T01
Chr2	CDS	21293561	21293719	21293561	ID=MsG0280007822.01.T01:cds;Parent=MsG0280007822.01.T01
Chr2	CDS	21292937	21293146	21292937	ID=MsG0280007822.01.T01:cds;Parent=MsG0280007822.01.T01

Gene Sequence

>MsG0280007822.01.T01

ATGAGTGTTGAAACTTCATCACGATTCATGGGTGGGCACCATGATTTGCCTAACTTATCGTCAATCCAAACATACACTGAGTTGAAGATATACATTGAAATCTACAAGCATAACAAAGAAGAAAGAATAGCTAGAACCCGGGGAACAACTGCTCCAGGATTGCCTTACGTTGAGGAGGTCATTGCTCCAGCTGGAAATTGGCTTATTGGAGGAGATTTGGAAGTGCTAAAACCTATCAAATACAATGATGGTCTTGATAACTACAGGCTCTCTCCCAAACAACTTTGTGAAGAATTCGATAGGCGTAAAGCTGATGCAGTTTTTGCCTTTCAGTTAAGAAATCCGGTCCATAATGGTCATGCCTTGTTAATGAATGATACTCGTCAACGTCTATTAGACATGGGTTACAAAAATCCAATTTTATTGCTTCATCCTCTTGGAGGTTTCACAAAGGTTGACGATGTTCCGTTAGATGTCAGGATGGAGCAACATAGCAAGTCACGGATAAATGCAGGTGCCAACTTCTATATTGTTGGTTGCGATCCCACTGGTATGGGTCATCCAACTGAGAAACGGGACTTGTATGACCCTGATCATGGAAAAAAGGTGCGTAGCATGGTCCTGGTCTCAAGAAGCTTAAACATTTTGCCATTCAGGGTGGCAGCTTATGACACTAAGGTAAACAAGATGGCATTTTTGACCCTAGCCGTGCTAAAGCTTTCTACACGTTTTTGTGCAGATCTGAGGCATCTGAAGTTTTTCTACACGGTGTTTCTGAAGCTGGGGAAAACAGAAGAGGAGTTGCTTCTTTCTAAAGGTGTACGTAAAGACCCATCTTCCGTGACACCGTCTATGTCTTCAAAGTAG

Protein sequence

>MsG0280007822.01.T01

MSVETSSRFMGGHHDLPNLSSIQTYTELKIYIEIYKHNKEERIARTRGTTAPGLPYVEEVIAPAGNWLIGGDLEVLKPIKYNDGLDNYRLSPKQLCEEFDRRKADAVFAFQLRNPVHNGHALLMNDTRQRLLDMGYKNPILLLHPLGGFTKVDDVPLDVRMEQHSKSRINAGANFYIVGCDPTGMGHPTEKRDLYDPDHGKKVRSMVLVSRSLNILPFRVAAYDTKVNKMAFLTLAVLKLSTRFCADLRHLKFFYTVFLKLGKTEEELLLSKGVRKDPSSVTPSMSSK*