AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041706.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041706.01.T01 MTR_7g116630 83.529 85 11 1 94 175 202 286 6.44e-41 141
MsG0780041706.01.T01 MTR_7g116630 83.529 85 11 1 94 175 299 383 7.12e-41 143
MsG0780041706.01.T01 MTR_7g116630 73.563 87 22 1 15 100 71 157 6.21e-34 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041706.01.T01 AT1G08550 81.538 65 12 0 107 171 317 381 6.04e-32 119
MsG0780041706.01.T01 AT1G08550 56.923 65 27 1 37 100 94 158 4.84e-18 80.9
MsG0780041706.01.T01 AT1G08550 81.538 65 12 0 107 171 317 381 6.04e-32 119
MsG0780041706.01.T01 AT1G08550 56.923 65 27 1 37 100 94 158 4.84e-18 80.9
MsG0780041706.01.T01 AT1G08550 81.538 65 12 0 107 171 317 381 6.04e-32 119
MsG0780041706.01.T01 AT1G08550 56.923 65 27 1 37 100 94 158 4.84e-18 80.9

Find 49 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTCTATTGTTGCAAGTT+TGG 0.257638 7:+94259667 None:intergenic
TGATGGAACAATCATTAAAA+TGG 0.294429 7:+94261092 None:intergenic
CATTAAAATGGAAACCAATA+TGG 0.319532 7:+94261104 None:intergenic
TGTGGAAAGGCTGGAGAAAA+AGG 0.341274 7:-94258190 MsG0780041706.01.T01:CDS
AATCCAAGTAGCTGCCATAT+TGG 0.365045 7:-94261118 MsG0780041706.01.T01:CDS
TTTACGTACTCAGGGTGAAT+TGG 0.381312 7:-94259734 MsG0780041706.01.T01:intron
CCGTGGGATGTTTGAAGGAT+TGG 0.387680 7:+94261333 None:intergenic
TGCTTGTTGTTCTTGAAGAT+TGG 0.391049 7:-94261155 MsG0780041706.01.T01:CDS
CTTACCCGTGGGATGTTTGA+AGG 0.396877 7:+94261328 None:intergenic
AAGATTCTCCTCTCCCTTTG+TGG 0.398745 7:+94261359 None:intergenic
CGTGGGATGTTTGAAGGATT+GGG 0.415113 7:+94261334 None:intergenic
TTCGCCGCTCTATCAAGTTC+AGG 0.422854 7:+94258279 None:intergenic
CTTGGCCATTCAGTCTCATC+TGG 0.429345 7:+94259648 None:intergenic
AGTTCAGGAATAATAGATTC+AGG 0.446993 7:+94258294 None:intergenic
GCCTTCCATTGTGGAAAGGC+TGG 0.448724 7:-94258199 MsG0780041706.01.T01:CDS
CTTTGTGGTGGTGTTGACAT+TGG 0.456892 7:+94261374 None:intergenic
AAACCAATATGGCAGCTACT+TGG 0.458398 7:+94261115 None:intergenic
TCCAGCCTTTCCACAATGGA+AGG 0.485251 7:+94258198 None:intergenic
ACCGAGGCAGAAACGATGCC+TGG 0.505827 7:-94258366 MsG0780041706.01.T01:intron
AATGTCAACACCACCACAAA+GGG 0.512415 7:-94261372 MsG0780041706.01.T01:CDS
CTTTCCACAATGGAAGGCTC+TGG 0.512849 7:+94258204 None:intergenic
CCTGGATGGGATGGCTATGG+TGG 0.513140 7:-94258348 MsG0780041706.01.T01:CDS
GGCAGAAACGATGCCTGGAT+GGG 0.513877 7:-94258361 MsG0780041706.01.T01:intron
AGGCAGAAACGATGCCTGGA+TGG 0.515133 7:-94258362 MsG0780041706.01.T01:intron
CCACCATAGCCATCCCATCC+AGG 0.535483 7:+94258348 None:intergenic
GATAGAGCGGCGAAGAGTGT+AGG 0.550668 7:-94258270 MsG0780041706.01.T01:CDS
GCATCAACAGCATCAGCTGA+TGG 0.551936 7:+94261075 None:intergenic
CCAATCCTTCAAACATCCCA+CGG 0.560307 7:-94261333 MsG0780041706.01.T01:CDS
ATGCCTGGATGGGATGGCTA+TGG 0.562680 7:-94258351 MsG0780041706.01.T01:CDS
ATTCTCCTCTCCCTTTGTGG+TGG 0.565315 7:+94261362 None:intergenic
GAAACGATGCCTGGATGGGA+TGG 0.570381 7:-94258357 MsG0780041706.01.T01:CDS
CTTACTTACTTACTTACCCG+TGG 0.570926 7:+94261316 None:intergenic
TTTCTCCAGCCTTTCCACAA+TGG 0.585799 7:+94258194 None:intergenic
ATAGACCAGATGAGACTGAA+TGG 0.587063 7:-94259653 MsG0780041706.01.T01:CDS
TTACTTACTTACTTACCCGT+GGG 0.587943 7:+94261317 None:intergenic
CTTGTTTGCTCAAAGAATGC+AGG 0.593029 7:-94261038 MsG0780041706.01.T01:intron
CAACACCACCACAAAGGGAG+AGG 0.598178 7:-94261367 MsG0780041706.01.T01:CDS
AGCAATGTGGCAGCACATGA+TGG 0.598907 7:+94259695 None:intergenic
TATTCCTGAACTTGATAGAG+CGG 0.601431 7:-94258283 MsG0780041706.01.T01:CDS
TGGACCAGAGCCTTCCATTG+TGG 0.604287 7:-94258208 MsG0780041706.01.T01:CDS
CAGAGCCTTCCATTGTGGAA+AGG 0.614887 7:-94258203 MsG0780041706.01.T01:CDS
CAATGTCAACACCACCACAA+AGG 0.627156 7:-94261373 MsG0780041706.01.T01:CDS
CAATCCTTCAAACATCCCAC+GGG 0.630475 7:-94261332 MsG0780041706.01.T01:CDS
ACTCTTCAACTTCCTCACAA+TGG 0.637135 7:+94258149 None:intergenic
ATCAGAACAGATAACACATG+TGG 0.650232 7:-94258228 MsG0780041706.01.T01:CDS
AAGGAGAGAAAACCATTGTG+AGG 0.660171 7:-94258161 MsG0780041706.01.T01:CDS
TGCACTCCTTGTGTACACAA+CGG 0.678381 7:+94258323 None:intergenic
AAGTTTGGAGACAAGCAATG+TGG 0.707550 7:+94259682 None:intergenic
GTGGTGCCGTTGTGTACACA+AGG 0.721149 7:-94258329 MsG0780041706.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAAATATATAATCATC+TGG + Chr7:94261135-94261154 None:intergenic 10.0%
!!! TTATCTTTTATTATAGAAAT+AGG + Chr7:94260715-94260734 None:intergenic 10.0%
!!! ATTTTACATTTTTTTCACTA+TGG + Chr7:94258278-94258297 None:intergenic 15.0%
!!! TAATTTTATAGATCAAATGT+GGG - Chr7:94260008-94260027 MsG0780041706.01.T01:intron 15.0%
!!! TGAAATTGATTTAATTTGTT+TGG - Chr7:94259431-94259450 MsG0780041706.01.T01:intron 15.0%
!! AAGGTAAAATGATTTATGTT+TGG + Chr7:94258917-94258936 None:intergenic 20.0%
!! CAACTTAAGGAAAAAAAAAA+AGG - Chr7:94260622-94260641 MsG0780041706.01.T01:intron 20.0%
!! TATATATTTATATACTACCG+AGG - Chr7:94261141-94261160 MsG0780041706.01.T01:CDS 20.0%
!!! AATTTTATAGATCAAATGTG+GGG - Chr7:94260009-94260028 MsG0780041706.01.T01:intron 20.0%
!!! CTTTTTTTTTTTCCTTAAGT+TGG + Chr7:94260624-94260643 None:intergenic 20.0%
!!! GTAATTTTATAGATCAAATG+TGG - Chr7:94260007-94260026 MsG0780041706.01.T01:intron 20.0%
!!! TGATTTTTTGATATGTTTGA+AGG + Chr7:94259619-94259638 None:intergenic 20.0%
! AAAAAAAAAAGGACATGACA+CGG - Chr7:94260566-94260585 MsG0780041706.01.T01:intron 25.0%
! AAAAACTAAGCACTAACATT+TGG + Chr7:94258539-94258558 None:intergenic 25.0%
! AAACTTGTGGTAATATAACA+TGG - Chr7:94260255-94260274 MsG0780041706.01.T01:intron 25.0%
! ACAATGAAATATGAATGGTA+AGG + Chr7:94259930-94259949 None:intergenic 25.0%
! ACAGACTTCAACAAATATAA+AGG + Chr7:94261044-94261063 None:intergenic 25.0%
! ACTGATTGTAAATCTCTATA+TGG + Chr7:94261073-94261092 None:intergenic 25.0%
! ATACCTGTCAAAATGAAAAT+TGG + Chr7:94258327-94258346 None:intergenic 25.0%
! CATTAAAATGGAAACCAATA+TGG + Chr7:94258422-94258441 None:intergenic 25.0%
! CATTTGGCAATAAAAAAAAC+AGG + Chr7:94258523-94258542 None:intergenic 25.0%
! CTAATGTATTAGTATGTGTA+TGG + Chr7:94259729-94259748 None:intergenic 25.0%
! TAGAGTTAATTCTACTTTGA+AGG + Chr7:94259565-94259584 None:intergenic 25.0%
! TCAAAGTAGAATTAACTCTA+GGG - Chr7:94259565-94259584 MsG0780041706.01.T01:intron 25.0%
! TGATGGAACAATCATTAAAA+TGG + Chr7:94258434-94258453 None:intergenic 25.0%
! TTCAAAGTAGAATTAACTCT+AGG - Chr7:94259564-94259583 MsG0780041706.01.T01:intron 25.0%
! TTTGACAGGTATTACAAAAT+GGG - Chr7:94258335-94258354 MsG0780041706.01.T01:CDS 25.0%
!! ATTGATTCTAACTTGAAGTT+AGG - Chr7:94259486-94259505 MsG0780041706.01.T01:intron 25.0%
!! CATGATTTTATGTTACCTTT+AGG - Chr7:94260990-94261009 MsG0780041706.01.T01:intron 25.0%
!! TTTTGACAGGTATTACAAAA+TGG - Chr7:94258334-94258353 MsG0780041706.01.T01:CDS 25.0%
!!! ATGTTAGTGCTTAGTTTTTT+AGG - Chr7:94258540-94258559 MsG0780041706.01.T01:intron 25.0%
!!! CAAAATTGATTTGACATGTT+TGG + Chr7:94259120-94259139 None:intergenic 25.0%
!!! CATTTTTTACTAACCTAAAC+AGG - Chr7:94260429-94260448 MsG0780041706.01.T01:intron 25.0%
!!! TAGCATTTTGCTATTCAAAA+GGG - Chr7:94260499-94260518 MsG0780041706.01.T01:intron 25.0%
!!! TATCCAATTTTCATTTTGAC+AGG - Chr7:94258321-94258340 MsG0780041706.01.T01:CDS 25.0%
AATAAGCTGAAAACAGCTTA+TGG - Chr7:94260802-94260821 MsG0780041706.01.T01:intron 30.0%
ACCACTCATCTTGATATTTA+AGG + Chr7:94260382-94260401 None:intergenic 30.0%
ACCTTAAATATCAAGATGAG+TGG - Chr7:94260378-94260397 MsG0780041706.01.T01:intron 30.0%
AGATGGGTCAAAATTGATTA+TGG - Chr7:94258751-94258770 MsG0780041706.01.T01:intron 30.0%
AGTTCAGGAATAATAGATTC+AGG + Chr7:94261232-94261251 None:intergenic 30.0%
ATACACTTATTACACCATCT+CGG + Chr7:94259369-94259388 None:intergenic 30.0%
ATTTGTTTCCACAAGCTATT+CGG - Chr7:94260766-94260785 MsG0780041706.01.T01:intron 30.0%
CAAACATGCACTTATATCAT+CGG + Chr7:94258661-94258680 None:intergenic 30.0%
CAAAGTAGAATTAACTCTAG+GGG - Chr7:94259566-94259585 MsG0780041706.01.T01:intron 30.0%
CACAGAATCAAATAAACTTG+TGG - Chr7:94260242-94260261 MsG0780041706.01.T01:intron 30.0%
CATTGAAGAGAAATTGAACA+GGG + Chr7:94259250-94259269 None:intergenic 30.0%
CATTGCAAATTTGCAATACA+TGG + Chr7:94259213-94259232 None:intergenic 30.0%
CCAACTTAGGGAAAAAAAAA+AGG - Chr7:94260555-94260574 MsG0780041706.01.T01:intron 30.0%
GAAGTTAGAATCAATTATGG+AGG - Chr7:94259071-94259090 MsG0780041706.01.T01:intron 30.0%
GATGATATAAGTGCATGTTT+GGG - Chr7:94258660-94258679 MsG0780041706.01.T01:intron 30.0%
GCGGTGATAAAAAATGATAT+AGG - Chr7:94258684-94258703 MsG0780041706.01.T01:intron 30.0%
GCTGAAGTTAGAATCAATTA+TGG - Chr7:94259068-94259087 MsG0780041706.01.T01:intron 30.0%
GGTGTACAATGAAATATGAA+TGG + Chr7:94259935-94259954 None:intergenic 30.0%
GTAACCAAACAAACACTTAT+TGG + Chr7:94258725-94258744 None:intergenic 30.0%
GTACTCATTATCCTGATTAT+AGG + Chr7:94260360-94260379 None:intergenic 30.0%
TATTACAAAATGGGGTGAAT+AGG - Chr7:94258344-94258363 MsG0780041706.01.T01:CDS 30.0%
TGATCCAATAAGTGTTTGTT+TGG - Chr7:94258718-94258737 MsG0780041706.01.T01:intron 30.0%
TTGACAGGTATTACAAAATG+GGG - Chr7:94258336-94258355 MsG0780041706.01.T01:CDS 30.0%
! AGTGAGTTTAGAATCTAAGT+TGG + Chr7:94259280-94259299 None:intergenic 30.0%
! AGTTCTTAACTCTCTTTTAG+TGG - Chr7:94259186-94259205 MsG0780041706.01.T01:intron 30.0%
! CTTTTGAATAGCAAAATGCT+AGG + Chr7:94260500-94260519 None:intergenic 30.0%
! GCTTAATATGCAGATTTTAG+TGG - Chr7:94260152-94260171 MsG0780041706.01.T01:intron 30.0%
! GTGAGTTTAGAATCTAAGTT+GGG + Chr7:94259279-94259298 None:intergenic 30.0%
! TAAATGTCACTTCCAACTTA+AGG - Chr7:94260543-94260562 MsG0780041706.01.T01:intron 30.0%
! TAAATGTCACTTCCAACTTA+GGG - Chr7:94260543-94260562 MsG0780041706.01.T01:intron 30.0%
! TATTTGTTGAAGTCTGTCTT+TGG - Chr7:94261047-94261066 MsG0780041706.01.T01:CDS 30.0%
!! ATGAAGTTGATGTAAAGTAG+AGG + Chr7:94259906-94259925 None:intergenic 30.0%
!! TTAGTGTATGTTTTGTTCTG+CGG + Chr7:94259003-94259022 None:intergenic 30.0%
!!! ATCAATTTTGACTGCTACAA+AGG - Chr7:94259130-94259149 MsG0780041706.01.T01:intron 30.0%
!!! CCTTTTTTTTTTCCCTAAGT+TGG + Chr7:94260558-94260577 None:intergenic 30.0%
!!! CTAGCATTTTGCTATTCAAA+AGG - Chr7:94260498-94260517 MsG0780041706.01.T01:intron 30.0%
!!! GGAATTGATTTTGAGATGTT+TGG - Chr7:94258780-94258799 MsG0780041706.01.T01:intron 30.0%
ACACATTGTGGAGTTAAAGT+CGG + Chr7:94259314-94259333 None:intergenic 35.0%
ATACCAGGAATCCTATAATC+AGG - Chr7:94260346-94260365 MsG0780041706.01.T01:intron 35.0%
ATACCTGAGGAGTTATATGT+AGG + Chr7:94258607-94258626 None:intergenic 35.0%
ATCAGAACAGATAACACATG+TGG - Chr7:94261295-94261314 MsG0780041706.01.T01:intron 35.0%
ATTTACAATCAGTGATCTGC+AGG - Chr7:94261080-94261099 MsG0780041706.01.T01:CDS 35.0%
ATTTCATGAGCAAAGAGTTC+AGG + Chr7:94259972-94259991 None:intergenic 35.0%
ATTTCATGTAATGGCAGTCA+AGG + Chr7:94260219-94260238 None:intergenic 35.0%
CAAAATTGATTATGGAGGTG+TGG - Chr7:94258759-94258778 MsG0780041706.01.T01:intron 35.0%
CATTATACCTACACCTGTTT+AGG + Chr7:94260445-94260464 None:intergenic 35.0%
CCATTGAAGAGAAATTGAAC+AGG + Chr7:94259251-94259270 None:intergenic 35.0%
CCCATATGCATACCTTAAAA+CGG - Chr7:94260917-94260936 MsG0780041706.01.T01:intron 35.0%
CCTGTTCAATTTCTCTTCAA+TGG - Chr7:94259248-94259267 MsG0780041706.01.T01:intron 35.0%
CGATGATATAAGTGCATGTT+TGG - Chr7:94258659-94258678 MsG0780041706.01.T01:intron 35.0%
CTAAACAGGTGTAGGTATAA+TGG - Chr7:94260443-94260462 MsG0780041706.01.T01:intron 35.0%
CTAGGAACATATTCTTCATG+TGG + Chr7:94260482-94260501 None:intergenic 35.0%
CTTGTGGTAATATAACATGG+AGG - Chr7:94260258-94260277 MsG0780041706.01.T01:intron 35.0%
GTTTGGTTACACTTGTAGAT+GGG - Chr7:94258735-94258754 MsG0780041706.01.T01:intron 35.0%
TATCCTGATTATAGGATTCC+TGG + Chr7:94260352-94260371 None:intergenic 35.0%
TATTCCTGAACTTGATAGAG+CGG - Chr7:94261240-94261259 MsG0780041706.01.T01:intron 35.0%
TCTGTGTGCATTTCATGTAA+TGG + Chr7:94260228-94260247 None:intergenic 35.0%
TGCATATTAAGCTCTTCACA+AGG + Chr7:94260144-94260163 None:intergenic 35.0%
TGGGTCAAAATTGATTATGG+AGG - Chr7:94258754-94258773 MsG0780041706.01.T01:intron 35.0%
TGTAAAGTAGAGGACTAACT+TGG + Chr7:94259896-94259915 None:intergenic 35.0%
TGTTTGGTTACACTTGTAGA+TGG - Chr7:94258734-94258753 MsG0780041706.01.T01:intron 35.0%
TTACTAACCTAAACAGGTGT+AGG - Chr7:94260435-94260454 MsG0780041706.01.T01:intron 35.0%
TTACTTACTTACTTACCCGT+GGG + Chr7:94258209-94258228 None:intergenic 35.0%
TTATAGGATTCCTGGTATGA+AGG + Chr7:94260344-94260363 None:intergenic 35.0%
TTCTCACCATCAGATTTCTT+AGG + Chr7:94260098-94260117 None:intergenic 35.0%
TTTGTTTCCACAAGCTATTC+GGG - Chr7:94260767-94260786 MsG0780041706.01.T01:intron 35.0%
! CAGACTAAAAAGTGAGTTGA+AGG + Chr7:94258936-94258955 None:intergenic 35.0%
! CATCTTGGTTACACATTTTG+AGG - Chr7:94260948-94260967 MsG0780041706.01.T01:intron 35.0%
! CGAATGAGTTAGCTTATGTT+TGG + Chr7:94259166-94259185 None:intergenic 35.0%
! CTAACCTTATTTGTGTGTGT+TGG + Chr7:94259658-94259677 None:intergenic 35.0%
! CTTTGAAGGTAGAATTGTTG+AGG + Chr7:94259551-94259570 None:intergenic 35.0%
! GTAAATGTCACTTCCAACTT+AGG - Chr7:94260542-94260561 MsG0780041706.01.T01:intron 35.0%
! TAGAATTAACTCTAGGGGTT+AGG - Chr7:94259571-94259590 MsG0780041706.01.T01:intron 35.0%
! TTAGTATGTGTATGGTTCTG+AGG + Chr7:94259721-94259740 None:intergenic 35.0%
!! ACCTTTCAGGTTTAGCTAAA+AGG + Chr7:94261020-94261039 None:intergenic 35.0%
!! CAAATATAAAGGCACCTTTC+AGG + Chr7:94261033-94261052 None:intergenic 35.0%
!! CCTTTCAGGTTTAGCTAAAA+GGG + Chr7:94261019-94261038 None:intergenic 35.0%
!! CTTCCATTTTTACGTACTCA+GGG - Chr7:94259781-94259800 MsG0780041706.01.T01:intron 35.0%
!! GTTCAGGTTCTTTTGGTAAT+TGG + Chr7:94259956-94259975 None:intergenic 35.0%
!! TGCTTGTTGTTCTTGAAGAT+TGG - Chr7:94258368-94258387 MsG0780041706.01.T01:intron 35.0%
!!! ACCGTTTTAAGGTATGCATA+TGG + Chr7:94260921-94260940 None:intergenic 35.0%
!!! AGTGCTTAGTTTTTTAGGCA+AGG - Chr7:94258545-94258564 MsG0780041706.01.T01:intron 35.0%
!!! CCGTTTTAAGGTATGCATAT+GGG + Chr7:94260920-94260939 None:intergenic 35.0%
AAAACGGTTCTCTAGCATCT+TGG - Chr7:94260933-94260952 MsG0780041706.01.T01:intron 40.0%
AAAAGAGAGTTTCGTGAGCA+AGG + Chr7:94260409-94260428 None:intergenic 40.0%
AAACCAATATGGCAGCTACT+TGG + Chr7:94258411-94258430 None:intergenic 40.0%
AAGAAATCCACCATCTGAGT+TGG + Chr7:94260287-94260306 None:intergenic 40.0%
AAGCATATGCGAGACTGTTT+GGG + Chr7:94260857-94260876 None:intergenic 40.0%
AAGGAGAGAAAACCATTGTG+AGG - Chr7:94261362-94261381 MsG0780041706.01.T01:CDS 40.0%
AAGTTTGGAGACAAGCAATG+TGG + Chr7:94259844-94259863 None:intergenic 40.0%
AATCCAAGTAGCTGCCATAT+TGG - Chr7:94258405-94258424 MsG0780041706.01.T01:intron 40.0%
AATGTCAACACCACCACAAA+GGG - Chr7:94258151-94258170 MsG0780041706.01.T01:CDS 40.0%
ACTCTTCAACTTCCTCACAA+TGG + Chr7:94261377-94261396 None:intergenic 40.0%
ATAGACCAGATGAGACTGAA+TGG - Chr7:94259870-94259889 MsG0780041706.01.T01:intron 40.0%
ATATAACTCCTCAGGTATCC+TGG - Chr7:94258609-94258628 MsG0780041706.01.T01:intron 40.0%
CCTGAGTACGTAAAAATGGA+AGG + Chr7:94259783-94259802 None:intergenic 40.0%
CGAACCAACACACACAAATA+AGG - Chr7:94259651-94259670 MsG0780041706.01.T01:CDS 40.0%
CTGAAAACAGCTTATGGACA+TGG - Chr7:94260808-94260827 MsG0780041706.01.T01:intron 40.0%
CTGGTCTATTGTTGCAAGTT+TGG + Chr7:94259859-94259878 None:intergenic 40.0%
CTTACTTACTTACTTACCCG+TGG + Chr7:94258210-94258229 None:intergenic 40.0%
CTTGTTTGCTCAAAGAATGC+AGG - Chr7:94258485-94258504 MsG0780041706.01.T01:intron 40.0%
GAACTCGTTCTTACACATTG+TGG + Chr7:94259326-94259345 None:intergenic 40.0%
GCACTTATATCATCGGAGTT+AGG + Chr7:94258654-94258673 None:intergenic 40.0%
TAAGCATATGCGAGACTGTT+TGG + Chr7:94260858-94260877 None:intergenic 40.0%
TAGCTAAAAGGGTTGCCTAA+AGG + Chr7:94261008-94261027 None:intergenic 40.0%
TATAAGTGCATGTTTGGGTG+CGG - Chr7:94258665-94258684 MsG0780041706.01.T01:intron 40.0%
TCACCCTGAGTACGTAAAAA+TGG + Chr7:94259787-94259806 None:intergenic 40.0%
TGTATGTTCGATTCCACCTT+TGG - Chr7:94259384-94259403 MsG0780041706.01.T01:intron 40.0%
TGTGTGCCTAAGAAATCTGA+TGG - Chr7:94260089-94260108 MsG0780041706.01.T01:intron 40.0%
TGTTCAAGATCCTTCATACC+AGG - Chr7:94260331-94260350 MsG0780041706.01.T01:intron 40.0%
TTTACGTACTCAGGGTGAAT+TGG - Chr7:94259789-94259808 MsG0780041706.01.T01:intron 40.0%
! GATGCTAGAGAACCGTTTTA+AGG + Chr7:94260932-94260951 None:intergenic 40.0%
!! ATGCAGATTTTAGTGGCAAG+TGG - Chr7:94260159-94260178 MsG0780041706.01.T01:intron 40.0%
!! ATTTGTGTGTGTTGGTTCGT+AGG + Chr7:94259650-94259669 None:intergenic 40.0%
!! CAGATGGTGGATTTCTTACA+AGG - Chr7:94260290-94260309 MsG0780041706.01.T01:intron 40.0%
!! CCCTTTTAGCTAAACCTGAA+AGG - Chr7:94261016-94261035 MsG0780041706.01.T01:intron 40.0%
!! CCTTCCATTTTTACGTACTC+AGG - Chr7:94259780-94259799 MsG0780041706.01.T01:intron 40.0%
!! GCAAAGAGTTCAGGTTCTTT+TGG + Chr7:94259963-94259982 None:intergenic 40.0%
!!! GCTTAGTTTTTTAGGCAAGG+AGG - Chr7:94258548-94258567 MsG0780041706.01.T01:intron 40.0%
AAGATTCTCCTCTCCCTTTG+TGG + Chr7:94258167-94258186 None:intergenic 45.0%
AAGCTCTTCACAAGGACATC+CGG + Chr7:94260136-94260155 None:intergenic 45.0%
AAGGCTGGAGAAAAAGGTAG+AGG - Chr7:94261339-94261358 MsG0780041706.01.T01:CDS 45.0%
ACAAGAACATGCATCCGAGA+TGG - Chr7:94259352-94259371 MsG0780041706.01.T01:intron 45.0%
AGAATTTCCTGTTCCAACCC+CGG - Chr7:94260114-94260133 MsG0780041706.01.T01:intron 45.0%
ATGGAGGATACCAACTCAGA+TGG - Chr7:94260274-94260293 MsG0780041706.01.T01:intron 45.0%
ATGTTCGATTCCACCTTTGG+AGG - Chr7:94259387-94259406 MsG0780041706.01.T01:intron 45.0%
CAATCCTTCAAACATCCCAC+GGG - Chr7:94258191-94258210 MsG0780041706.01.T01:CDS 45.0%
CAATGTCAACACCACCACAA+AGG - Chr7:94258150-94258169 MsG0780041706.01.T01:CDS 45.0%
CCAATCCTTCAAACATCCCA+CGG - Chr7:94258190-94258209 MsG0780041706.01.T01:CDS 45.0%
CGTGGGATGTTTGAAGGATT+GGG + Chr7:94258192-94258211 None:intergenic 45.0%
CTGGAGAAAAAGGTAGAGGA+AGG - Chr7:94261343-94261362 MsG0780041706.01.T01:CDS 45.0%
GAGGAGGCAAATTGATCTAG+AGG - Chr7:94259406-94259425 MsG0780041706.01.T01:intron 45.0%
GATCAATTTGCCTCCTCCAA+AGG + Chr7:94259403-94259422 None:intergenic 45.0%
GGGCGTGTTTGAAAACAAAG+TGG - Chr7:94260029-94260048 MsG0780041706.01.T01:intron 45.0%
TGCACTCCTTGTGTACACAA+CGG + Chr7:94261203-94261222 None:intergenic 45.0%
TGTGGAAAGGCTGGAGAAAA+AGG - Chr7:94261333-94261352 MsG0780041706.01.T01:CDS 45.0%
TTTCTCCAGCCTTTCCACAA+TGG + Chr7:94261332-94261351 None:intergenic 45.0%
! AAGCTATTCGGGAGAGCTTT+TGG - Chr7:94260778-94260797 MsG0780041706.01.T01:intron 45.0%
! GGTATGCATATGGGCTTGTT+TGG + Chr7:94260911-94260930 None:intergenic 45.0%
!! CTTTGTGGTGGTGTTGACAT+TGG + Chr7:94258152-94258171 None:intergenic 45.0%
!! CATAATAAAAATAATATAAT+AGG - Chr7:94259757-94259776 MsG0780041706.01.T01:intron 5.0%
!!! CTATTATATTATTTTTATTA+TGG + Chr7:94259759-94259778 None:intergenic 5.0%
AAGCTCTCCCGAATAGCTTG+TGG + Chr7:94260777-94260796 None:intergenic 50.0%
AGCAATGTGGCAGCACATGA+TGG + Chr7:94259831-94259850 None:intergenic 50.0%
AGCTCTTCACAAGGACATCC+GGG + Chr7:94260135-94260154 None:intergenic 50.0%
ATTCTCCTCTCCCTTTGTGG+TGG + Chr7:94258164-94258183 None:intergenic 50.0%
CAATTTGCCTCCTCCAAAGG+TGG + Chr7:94259400-94259419 None:intergenic 50.0%
CAGAGCCTTCCATTGTGGAA+AGG - Chr7:94261320-94261339 MsG0780041706.01.T01:intron 50.0%
CCGTGGGATGTTTGAAGGAT+TGG + Chr7:94258193-94258212 None:intergenic 50.0%
CGGAGTTAGGAGTAGCTCAA+AGG + Chr7:94258641-94258660 None:intergenic 50.0%
CTTACCCGTGGGATGTTTGA+AGG + Chr7:94258198-94258217 None:intergenic 50.0%
CTTGGCCATTCAGTCTCATC+TGG + Chr7:94259878-94259897 None:intergenic 50.0%
CTTTCCACAATGGAAGGCTC+TGG + Chr7:94261322-94261341 None:intergenic 50.0%
GAGGATACCAACTCAGATGG+TGG - Chr7:94260277-94260296 MsG0780041706.01.T01:intron 50.0%
GCATCAACAGCATCAGCTGA+TGG + Chr7:94258451-94258470 None:intergenic 50.0%
GCGCCTACATATAACTCCTC+AGG - Chr7:94258601-94258620 MsG0780041706.01.T01:intron 50.0%
GGCAAGTGGTTCATCACTAG+TGG - Chr7:94260173-94260192 MsG0780041706.01.T01:intron 50.0%
TCAATGAGTGCGCTGTATCG+AGG - Chr7:94260060-94260079 MsG0780041706.01.T01:intron 50.0%
TCCAGCCTTTCCACAATGGA+AGG + Chr7:94261328-94261347 None:intergenic 50.0%
TGACTGCTACAAAGGACACG+AGG - Chr7:94259138-94259157 MsG0780041706.01.T01:intron 50.0%
TTCGCCGCTCTATCAAGTTC+AGG + Chr7:94261247-94261266 None:intergenic 50.0%
! TAGGAGTAGCTCAAAGGCAC+AGG + Chr7:94258635-94258654 None:intergenic 50.0%
! TTCGATTCCACCTTTGGAGG+AGG - Chr7:94259390-94259409 MsG0780041706.01.T01:intron 50.0%
!! GCAGTCAAGGCATCGAATGT+AGG + Chr7:94260206-94260225 None:intergenic 50.0%
AGGCAGAAACGATGCCTGGA+TGG - Chr7:94261161-94261180 MsG0780041706.01.T01:intron 55.0%
ATGCCTGGATGGGATGGCTA+TGG - Chr7:94261172-94261191 MsG0780041706.01.T01:intron 55.0%
CAACACCACCACAAAGGGAG+AGG - Chr7:94258156-94258175 MsG0780041706.01.T01:CDS 55.0%
GAAACGATGCCTGGATGGGA+TGG - Chr7:94261166-94261185 MsG0780041706.01.T01:intron 55.0%
GCCTTCCATTGTGGAAAGGC+TGG - Chr7:94261324-94261343 MsG0780041706.01.T01:intron 55.0%
GCTCTTCACAAGGACATCCG+GGG + Chr7:94260134-94260153 None:intergenic 55.0%
GGCAGAAACGATGCCTGGAT+GGG - Chr7:94261162-94261181 MsG0780041706.01.T01:intron 55.0%
TGGACCAGAGCCTTCCATTG+TGG - Chr7:94261315-94261334 MsG0780041706.01.T01:intron 55.0%
TTCACAAGGACATCCGGGGT+TGG + Chr7:94260130-94260149 None:intergenic 55.0%
! GATAGAGCGGCGAAGAGTGT+AGG - Chr7:94261253-94261272 MsG0780041706.01.T01:intron 55.0%
! TCCAGGCATCGTTTCTGCCT+CGG + Chr7:94261161-94261180 None:intergenic 55.0%
!! GTGGTGCCGTTGTGTACACA+AGG - Chr7:94261194-94261213 MsG0780041706.01.T01:intron 55.0%
ACCGAGGCAGAAACGATGCC+TGG - Chr7:94261157-94261176 MsG0780041706.01.T01:CDS 60.0%
AGGACATCCGGGGTTGGAAC+AGG + Chr7:94260124-94260143 None:intergenic 60.0%
CCACCATAGCCATCCCATCC+AGG + Chr7:94261178-94261197 None:intergenic 60.0%
CCTGGATGGGATGGCTATGG+TGG - Chr7:94261175-94261194 MsG0780041706.01.T01:intron 60.0%
! GTAGCTCAAAGGCACAGGCC+AGG + Chr7:94258630-94258649 None:intergenic 60.0%
GGCACAGGCCAGGATACCTG+AGG + Chr7:94258620-94258639 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 94258146 94261399 94258146 ID=MsG0780041706.01;Name=MsG0780041706.01
Chr7 mRNA 94258146 94261399 94258146 ID=MsG0780041706.01.T01;Parent=MsG0780041706.01;Name=MsG0780041706.01.T01;_AED=0.43;_eAED=0.51;_QI=0|0.33|0.25|1|0|0|4|0|179
Chr7 exon 94261329 94261399 94261329 ID=MsG0780041706.01.T01:exon:20721;Parent=MsG0780041706.01.T01
Chr7 exon 94261039 94261179 94261039 ID=MsG0780041706.01.T01:exon:20720;Parent=MsG0780041706.01.T01
Chr7 exon 94259649 94259743 94259649 ID=MsG0780041706.01.T01:exon:20719;Parent=MsG0780041706.01.T01
Chr7 exon 94258146 94258378 94258146 ID=MsG0780041706.01.T01:exon:20718;Parent=MsG0780041706.01.T01
Chr7 CDS 94261329 94261399 94261329 ID=MsG0780041706.01.T01:cds;Parent=MsG0780041706.01.T01
Chr7 CDS 94261039 94261179 94261039 ID=MsG0780041706.01.T01:cds;Parent=MsG0780041706.01.T01
Chr7 CDS 94259649 94259743 94259649 ID=MsG0780041706.01.T01:cds;Parent=MsG0780041706.01.T01
Chr7 CDS 94258146 94258378 94258146 ID=MsG0780041706.01.T01:cds;Parent=MsG0780041706.01.T01
Gene Sequence

>MsG0780041706.01.T01

ATGCCAATGTCAACACCACCACAAAGGGAGAGGAGAATCTTCTCCCAATCCTTCAAACATCCCACGGGTAAGATGCTTGTTGTTCTTGAAGATTGGAGAAATTCACGCATAATCCAAGTAGCTGCCATATTGGTTTCCATTTTAATGATTGTTCCATCAGCTGATGCTGTTGATGCACTCAAAACTTGTGCTTGTTTGCTCAAAGAATGCAGGGTGAATTGGCTAAGTGTCTTGCAAACCATCATGTGCTGCCACATTGCTTGTCTCCAAACTTGCAACAATAGACCAGATGAGACTGAATGGCCAAAAACGATGCCTGGATGGGATGGCTATGGTGGTGCCGTTGTGTACACAAGGAGTGCAGTTTTACCTGAATCTATTATTCCTGAACTTGATAGAGCGGCGAAGAGTGTAGGAAGAGACTTTAGCAAGTTCATCAGAACAGATAACACATGTGGACCAGAGCCTTCCATTGTGGAAAGGCTGGAGAAAAAGGTAGAGGAAGGAGAGAAAACCATTGTGAGGAAGTTGAAGAGTTAG

Protein sequence

>MsG0780041706.01.T01

MPMSTPPQRERRIFSQSFKHPTGKMLVVLEDWRNSRIIQVAAILVSILMIVPSADAVDALKTCACLLKECRVNWLSVLQTIMCCHIACLQTCNNRPDETEWPKTMPGWDGYGGAVVYTRSAVLPESIIPELDRAAKSVGRDFSKFIRTDNTCGPEPSIVERLEKKVEEGEKTIVRKLKS*