AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032520.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032520.01.T01 MTR_6g086600 87.936 373 14 3 1 342 1 373 0.0 645
MsG0680032520.01.T01 MTR_6g086600 87.393 349 15 2 23 342 16 364 0.0 602
MsG0680032520.01.T01 MTR_1g070360 40.541 148 78 3 184 326 54 196 3.33e-33 125
MsG0680032520.01.T01 MTR_1g016110 35.795 176 92 4 153 323 28 187 4.04e-18 84.3
MsG0680032520.01.T01 MTR_1g019620 35.795 176 92 4 153 323 75 234 1.44e-17 83.6
MsG0680032520.01.T01 MTR_1g016110 35.795 176 92 4 153 323 75 234 1.51e-17 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032520.01.T01 AT3G24430 78.644 295 34 2 77 342 78 372 8.89e-163 466
MsG0680032520.01.T01 AT4G19540 43.448 145 78 3 184 326 75 217 2.49e-32 124
MsG0680032520.01.T01 AT5G50960 35.754 179 103 5 159 332 72 243 4.83e-23 99.0

Find 115 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATCATTGATCCAGATTT+TGG 0.095166 6:-43625946 MsG0680032520.01.T01:CDS
CAACACATACTCCTAGATTT+TGG 0.188730 6:+43623252 None:intergenic
ATCATAAAACATTCTCCTTT+TGG 0.222041 6:-43621450 MsG0680032520.01.T01:three_prime_UTR
TATATTGATGCTGATATTTA+TGG 0.226095 6:-43625102 MsG0680032520.01.T01:CDS
ATGCGCGGCCCTATGGTTTC+TGG 0.254274 6:-43624862 MsG0680032520.01.T01:CDS
GGAGTCAAGTTGGTTTCTTT+TGG 0.256137 6:-43624910 MsG0680032520.01.T01:CDS
GAGACATACAGTCGGCTAAT+AGG 0.268458 6:+43623459 None:intergenic
AATTATGCCGTTTCAATAAC+AGG 0.287392 6:-43622462 MsG0680032520.01.T01:three_prime_UTR
ACAATATCCGTTCCAAAATC+TGG 0.310740 6:+43625934 None:intergenic
ACAATTACAGCAGCAGTTAA+TGG 0.320244 6:+43623927 None:intergenic
TCCCATTGCCGAATTTCTTC+AGG 0.330388 6:+43622485 None:intergenic
TCTGTGAATGTAAAGTGTTC+AGG 0.337643 6:-43627226 MsG0680032520.01.T01:CDS
AAAGGGACCAAAGTTCATTA+TGG 0.349495 6:-43627195 MsG0680032520.01.T01:CDS
CATGTATTCAGTTGGAATTA+TGG 0.354832 6:+43624933 None:intergenic
GCTAGAGCTGCTTCTGTTGA+AGG 0.357102 6:-43627130 MsG0680032520.01.T01:intron
TGGTCCAAGCTTACCAACTA+TGG 0.359534 6:-43625082 MsG0680032520.01.T01:CDS
TTGCAGGTTGTTCAGCAGTT+TGG 0.361065 6:-43623503 MsG0680032520.01.T01:intron
TCATTCCGTCTCACTGTTGC+AGG 0.363783 6:+43622657 None:intergenic
TATGGACTTCTTATAATAAG+AGG 0.376124 6:-43627177 MsG0680032520.01.T01:CDS
TGCAATTATGCGCGGCCCTA+TGG 0.383680 6:-43624869 MsG0680032520.01.T01:CDS
CAATTACAGCAGCAGTTAAT+GGG 0.383745 6:+43623928 None:intergenic
ATTGTCTGAAGTTGATCATA+AGG 0.398569 6:+43621769 None:intergenic
ATCGACATGCCTCCGGGAAC+AGG 0.402030 6:-43624454 MsG0680032520.01.T01:CDS
CCAGTAGAAGCATAGTATAT+TGG 0.403787 6:-43621626 MsG0680032520.01.T01:three_prime_UTR
AGACATACAGTCGGCTAATA+GGG 0.408261 6:+43623460 None:intergenic
ACATTGAACCTGAAGAAATT+CGG 0.416513 6:-43622493 MsG0680032520.01.T01:three_prime_UTR
GAAAGAATTTCATCTGAATC+TGG 0.418952 6:+43622685 None:intergenic
AGTTGAATGTCTCCTGTTCC+CGG 0.419810 6:+43624442 None:intergenic
GAGATATATGCTTTACTCAA+TGG 0.421608 6:+43621543 None:intergenic
AGGTGGTGGCAGTGCTCCCT+TGG 0.423999 6:-43625475 MsG0680032520.01.T01:CDS
GGCTTTCAATACATCATCTT+CGG 0.428251 6:+43625975 None:intergenic
GAGGAGATTCACCTTGCAAC+TGG 0.430371 6:+43625349 None:intergenic
TGAGGATCAGCCACCACTTC+AGG 0.439550 6:+43623296 None:intergenic
GTTCAATGTAATCAGAATAT+CGG 0.440547 6:+43622507 None:intergenic
GGAAGTTCCTCGGTATCAAC+TGG 0.444743 6:-43626003 MsG0680032520.01.T01:CDS
TTGAATCTCAGGTGTCGTTT+CGG 0.446377 6:-43625784 MsG0680032520.01.T01:intron
CCTTGTTATCGACATGCCTC+CGG 0.447834 6:-43624461 MsG0680032520.01.T01:CDS
TCCAAGATATTCCAAAATCT+AGG 0.449108 6:-43623263 MsG0680032520.01.T01:three_prime_UTR
AAGAAGTCCATAATGAACTT+TGG 0.449601 6:+43627188 None:intergenic
TGGAAAAGATACTATCCATT+TGG 0.451525 6:-43623661 MsG0680032520.01.T01:intron
ACCTGAAGAAATTCGGCAAT+GGG 0.451537 6:-43622486 MsG0680032520.01.T01:three_prime_UTR
GGAAAATCGAATATTAGAAA+TGG 0.456568 6:-43625052 MsG0680032520.01.T01:intron
CATAATTCCAACTGAATACA+TGG 0.456907 6:-43624932 MsG0680032520.01.T01:CDS
AGCTATCCGTTCTGAGATAG+TGG 0.461249 6:-43623323 MsG0680032520.01.T01:CDS
CATTCAACTCACTTTATGCC+AGG 0.470185 6:-43624428 MsG0680032520.01.T01:intron
TCGATGTTGCAAAAGGAGTT+CGG 0.470587 6:-43623878 MsG0680032520.01.T01:CDS
CATATGACAGTTTGAGAAGC+AGG 0.482624 6:-43625504 MsG0680032520.01.T01:intron
GAGACCATAGTTGGTAAGCT+TGG 0.482760 6:+43625078 None:intergenic
CTTGTTATCGACATGCCTCC+GGG 0.484187 6:-43624460 MsG0680032520.01.T01:CDS
GGAAGTTGCTCTGCGAATAA+CGG 0.492258 6:+43625410 None:intergenic
CCAATATACTATGCTTCTAC+TGG 0.496248 6:+43621626 None:intergenic
TATGAAGCTTCATTTCCAAA+AGG 0.500984 6:+43621435 None:intergenic
GTTTGAGAAGCAGGCAAATG+AGG 0.501339 6:-43625495 MsG0680032520.01.T01:CDS
TGAATACATGGGAGTCAAGT+TGG 0.507061 6:-43624920 MsG0680032520.01.T01:CDS
TCATTTACCACGTCCTTGAT+CGG 0.507285 6:+43625737 None:intergenic
CAGACAATGGAACGGTTAGT+TGG 0.507492 6:-43621754 MsG0680032520.01.T01:three_prime_UTR
GTTTCAATAACAGGGCCTGA+TGG 0.508418 6:-43622453 MsG0680032520.01.T01:three_prime_UTR
ATCAGGCCCTGTTATTGAAA+CGG 0.516906 6:+43622455 None:intergenic
AGGGCCTGATGGGTTTAGTC+AGG 0.518108 6:-43622442 MsG0680032520.01.T01:intron
TTCGCAGAGCAACTTCCAGC+AGG 0.518320 6:-43625404 MsG0680032520.01.T01:CDS
TCGTTCATCGATGTTGCAAA+AGG 0.518766 6:-43623885 MsG0680032520.01.T01:CDS
TTGACTCCCATGTATTCAGT+TGG 0.519307 6:+43624925 None:intergenic
TTTCAATAACAGGGCCTGAT+GGG 0.519704 6:-43622452 MsG0680032520.01.T01:three_prime_UTR
GAAATCGTCTGTAAACCTGC+TGG 0.523125 6:+43625389 None:intergenic
GGAACGGATATTGTTACTTG+TGG 0.525646 6:-43625925 MsG0680032520.01.T01:CDS
GGTGGTGGCAGTGCTCCCTT+GGG 0.525748 6:-43625474 MsG0680032520.01.T01:CDS
ATGGACTTCTTATAATAAGA+GGG 0.529864 6:-43627176 MsG0680032520.01.T01:CDS
GCAGGAATAGAATACCTTGT+TGG 0.530146 6:+43623207 None:intergenic
TTTAAACAGGATGAATGGAC+GGG 0.535044 6:-43622549 MsG0680032520.01.T01:intron
CTTACCAACTATGGTCTCTC+CGG 0.539146 6:-43625073 MsG0680032520.01.T01:CDS
TACACCGGCATGTCCGATCA+AGG 0.549240 6:-43625750 MsG0680032520.01.T01:CDS
AACCTGAAGAAATTCGGCAA+TGG 0.556115 6:-43622487 MsG0680032520.01.T01:three_prime_UTR
ACTCGGTAGTAGTGAGAAGT+TGG 0.557427 6:+43624830 None:intergenic
TTGCAGATCGATAAAGCTCT+AGG 0.558415 6:-43625889 MsG0680032520.01.T01:CDS
ATTACCTGACTAAACCCATC+AGG 0.562451 6:+43622438 None:intergenic
ATATGCAGTTGGAAGTTCCT+CGG 0.563519 6:-43626013 MsG0680032520.01.T01:intron
CAACAGTGAGACGGAATGAT+CGG 0.575612 6:-43622653 MsG0680032520.01.T01:three_prime_UTR
ACATTGACATTCTTGACCCA+AGG 0.579491 6:+43625458 None:intergenic
ATACAAAGCTAGTGTGTGGA+TGG 0.581619 6:+43621471 None:intergenic
ATGATCGGTCTGCTCGAGTG+TGG 0.581748 6:-43622638 MsG0680032520.01.T01:intron
GAAGCAGGCAAATGAGGTGG+TGG 0.582151 6:-43625489 MsG0680032520.01.T01:CDS
ATTGCCTTGCGATTTATCGT+AGG 0.583150 6:+43622721 None:intergenic
CCGGAGGCATGTCGATAACA+AGG 0.586363 6:+43624461 None:intergenic
TAGTGACTCCAGAAACCATA+GGG 0.591488 6:+43624854 None:intergenic
GGCATGTCCGATCAAGGACG+TGG 0.592063 6:-43625744 MsG0680032520.01.T01:intron
TGCATCCTGCAACAGTGAGA+CGG 0.597022 6:-43622662 MsG0680032520.01.T01:three_prime_UTR
TTATGATCAACTTCAGACAA+TGG 0.600201 6:-43621767 MsG0680032520.01.T01:three_prime_UTR
TATCGCTGTATCCAGTTGCA+AGG 0.603418 6:-43625360 MsG0680032520.01.T01:intron
TAGTGGAATGCCTGAAGTGG+TGG 0.628766 6:-43623306 MsG0680032520.01.T01:CDS
CTGCATGTTGATGAGTGTGG+TGG 0.630762 6:+43627554 None:intergenic
ACGTCCTTGATCGGACATGC+CGG 0.631014 6:+43625746 None:intergenic
GGCTGTTCCAGTTGATACCG+AGG 0.634942 6:+43625996 None:intergenic
ATCTTGGAAAACATCACTTG+AGG 0.640170 6:+43623278 None:intergenic
ATTATGCCGTTTCAATAACA+GGG 0.641012 6:-43622461 MsG0680032520.01.T01:three_prime_UTR
GGCATTCCACTATCTCAGAA+CGG 0.641126 6:+43623317 None:intergenic
TTAAACAGGATGAATGGACG+GGG 0.643427 6:-43622548 MsG0680032520.01.T01:intron
TGGATCAATGATCTGAGACA+AGG 0.643587 6:+43625954 None:intergenic
TTAGTGACTCCAGAAACCAT+AGG 0.646928 6:+43624853 None:intergenic
TGTGCTAAAATACGCCAACA+AGG 0.648845 6:-43623221 MsG0680032520.01.T01:intron
CATTGACATTCTTGACCCAA+GGG 0.654050 6:+43625459 None:intergenic
TCGGTTAGAGCTCACTACAC+CGG 0.658277 6:-43625765 MsG0680032520.01.T01:CDS
GTGACCTACGATAAATCGCA+AGG 0.658506 6:-43622725 MsG0680032520.01.T01:three_prime_UTR
TGAGAAGCAGGCAAATGAGG+TGG 0.659115 6:-43625492 MsG0680032520.01.T01:CDS
ATCAACTTCAGACAATGGAA+CGG 0.672374 6:-43621762 MsG0680032520.01.T01:three_prime_UTR
TATGATACAAAGCTAGTGTG+TGG 0.672585 6:+43621467 None:intergenic
CAAGGACGTGCAATTATGCG+CGG 0.675432 6:-43624877 MsG0680032520.01.T01:CDS
AGATAGTGGAATGCCTGAAG+TGG 0.678327 6:-43623309 MsG0680032520.01.T01:CDS
ATAATTCCAACTGAATACAT+GGG 0.686201 6:-43624931 MsG0680032520.01.T01:CDS
TTCTCGACAACAGCTACACA+AGG 0.689907 6:+43623705 None:intergenic
GATCGATAAAGCTCTAGGAG+AGG 0.690504 6:-43625884 MsG0680032520.01.T01:intron
ATAGGGAGATCAAATAGATG+CGG 0.696235 6:+43623477 None:intergenic
TAAACAGGATGAATGGACGG+GGG 0.700512 6:-43622547 MsG0680032520.01.T01:intron
ATACTGCATGTTGATGAGTG+TGG 0.714831 6:+43627551 None:intergenic
TGAATGTCTCCTGTTCCCGG+AGG 0.729128 6:+43624445 None:intergenic
AACTTCTCACTACTACCGAG+TGG 0.751912 6:-43624828 MsG0680032520.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTAATTTCTTTATCA+TGG + Chr6:43623454-43623473 None:intergenic 10.0%
!! TAAAGATTATTATATAAATG+TGG + Chr6:43624484-43624503 None:intergenic 10.0%
!! TTTATGTTATTCAAATTTAT+TGG - Chr6:43624373-43624392 MsG0680032520.01.T01:intron 10.0%
!!! ATTAATTTTTTTGTGATATT+AGG - Chr6:43627640-43627659 MsG0680032520.01.T01:five_prime_UTR 10.0%
!!! GTTTTTAAATGTATAATATA+GGG - Chr6:43624042-43624061 MsG0680032520.01.T01:intron 10.0%
!!! TGTTTTTAAATGTATAATAT+AGG - Chr6:43624041-43624060 MsG0680032520.01.T01:intron 10.0%
!!! TTAATTTTTTTGTGATATTA+GGG - Chr6:43627641-43627660 MsG0680032520.01.T01:five_prime_UTR 10.0%
!!! TTTATGTTTTTTTTTTTGAA+AGG - Chr6:43621957-43621976 MsG0680032520.01.T01:intron 10.0%
!!! TTTTTATTTTTTGTTTTTTC+AGG - Chr6:43621789-43621808 MsG0680032520.01.T01:intron 10.0%
!! AAAGTGAAAAAATTTGTATT+AGG + Chr6:43626233-43626252 None:intergenic 15.0%
!! AAGATAAGATTTATTAGTAA+GGG + Chr6:43626000-43626019 None:intergenic 15.0%
!! AATAAGAATATATTAAAAGG+TGG + Chr6:43621535-43621554 None:intergenic 15.0%
!! ATTATACATTTAAAAACACA+TGG + Chr6:43624039-43624058 None:intergenic 15.0%
!! GTAATTAGATTAACTATTTA+TGG + Chr6:43623797-43623816 None:intergenic 15.0%
!! TAAGATAAGATTTATTAGTA+AGG + Chr6:43626001-43626020 None:intergenic 15.0%
!! TGTCAAAAAAAATATAAATG+TGG + Chr6:43624454-43624473 None:intergenic 15.0%
!!! AGCAATTAATTTTTAATAGT+CGG - Chr6:43627148-43627167 MsG0680032520.01.T01:CDS 15.0%
!!! ATAATCATTTTTTAGTTTCT+CGG + Chr6:43623522-43623541 None:intergenic 15.0%
!!! TAATTTGTATTTACATACTT+CGG - Chr6:43622733-43622752 MsG0680032520.01.T01:three_prime_UTR 15.0%
!!! TAATTTTTTTGTGATATTAG+GGG - Chr6:43627642-43627661 MsG0680032520.01.T01:five_prime_UTR 15.0%
!!! TTATTTTGTGTTTATGTAAA+AGG - Chr6:43625321-43625340 MsG0680032520.01.T01:intron 15.0%
!! AAAAACACAGTATTTAATCA+CGG - Chr6:43622638-43622657 MsG0680032520.01.T01:intron 20.0%
!! AAAGTTCCTTCTATTAAAAA+TGG - Chr6:43627001-43627020 MsG0680032520.01.T01:intron 20.0%
!! AGTAATATATATTATGCAGT+AGG + Chr6:43621642-43621661 None:intergenic 20.0%
!! AGTTAAAGTAATTACACTAT+AGG + Chr6:43625058-43625077 None:intergenic 20.0%
!! ATTGTGAAAATATCATTGTT+AGG - Chr6:43622092-43622111 MsG0680032520.01.T01:intron 20.0%
!! GTCAAAAATAAAAATTTGCA+GGG - Chr6:43623857-43623876 MsG0680032520.01.T01:intron 20.0%
!! TATAAGTTATAACTTCCATA+GGG - Chr6:43622197-43622216 MsG0680032520.01.T01:intron 20.0%
!! TATATTGATGCTGATATTTA+TGG - Chr6:43623949-43623968 MsG0680032520.01.T01:intron 20.0%
!! TATCATTTCTTCATATTTGT+TGG + Chr6:43623225-43623244 None:intergenic 20.0%
!! TCAAAAATAAAAATTTGCAG+GGG - Chr6:43623858-43623877 MsG0680032520.01.T01:intron 20.0%
!! TGTCAAAAATAAAAATTTGC+AGG - Chr6:43623856-43623875 MsG0680032520.01.T01:intron 20.0%
!! TTATAAGTTATAACTTCCAT+AGG - Chr6:43622196-43622215 MsG0680032520.01.T01:intron 20.0%
!! TTTCTATTATGCAATATTCA+GGG + Chr6:43626117-43626136 None:intergenic 20.0%
!!! AATACAATTTTTGTATCATC+TGG + Chr6:43626937-43626956 None:intergenic 20.0%
!!! ACTTTAAAACTAGTTACATT+CGG + Chr6:43625914-43625933 None:intergenic 20.0%
!!! AGTTTTGCATATATACTTAA+TGG + Chr6:43626079-43626098 None:intergenic 20.0%
!!! ATCTGTATACTTTTTAACAA+GGG + Chr6:43622615-43622634 None:intergenic 20.0%
!!! ATTTCTAATATTCGATTTTC+CGG + Chr6:43624000-43624019 None:intergenic 20.0%
!!! ATTTTTTGTTTTTTCAGGTT+TGG - Chr6:43621794-43621813 MsG0680032520.01.T01:intron 20.0%
!!! GAACTAACTTTATTTTAAAC+AGG - Chr6:43626489-43626508 MsG0680032520.01.T01:intron 20.0%
!!! GTTTGAAAGTTTTGTAAATA+AGG - Chr6:43622061-43622080 MsG0680032520.01.T01:intron 20.0%
!!! GTTTTGTAAATAAGGATAAT+TGG - Chr6:43622069-43622088 MsG0680032520.01.T01:intron 20.0%
!!! TAATTTAAAAAGCATCAAGT+AGG + Chr6:43624430-43624449 None:intergenic 20.0%
!!! TATCTGTATACTTTTTAACA+AGG + Chr6:43622616-43622635 None:intergenic 20.0%
!!! TGTATTTTTGTTGTGATTTT+TGG - Chr6:43621695-43621714 MsG0680032520.01.T01:three_prime_UTR 20.0%
!!! TTAAATGACATGATTTGTTA+AGG + Chr6:43624322-43624341 None:intergenic 20.0%
!!! TTTATTTTAAACAGGATGAA+TGG - Chr6:43626497-43626516 MsG0680032520.01.T01:intron 20.0%
!!! TTTTCTATTATGCAATATTC+AGG + Chr6:43626118-43626137 None:intergenic 20.0%
!!! TTTTTTCTTTCTCTTGATTT+TGG - Chr6:43621594-43621613 MsG0680032520.01.T01:three_prime_UTR 20.0%
! AAAAATAAAAATTTGCAGGG+GGG - Chr6:43623860-43623879 MsG0680032520.01.T01:CDS 25.0%
! AACTTTCAACGATAATAGAA+AGG + Chr6:43622699-43622718 None:intergenic 25.0%
! AAGAGAAGAGAATAAACTAA+AGG + Chr6:43625642-43625661 None:intergenic 25.0%
! AATATGACCAATATATGATG+AGG + Chr6:43623724-43623743 None:intergenic 25.0%
! AATTTGTATTAGGATGCATT+AGG + Chr6:43626223-43626242 None:intergenic 25.0%
! ATAATTCCAACTGAATACAT+GGG - Chr6:43624120-43624139 MsG0680032520.01.T01:intron 25.0%
! ATATATACTTAATGGAAAGC+AGG + Chr6:43626071-43626090 None:intergenic 25.0%
! ATGGACTTCTTATAATAAGA+GGG - Chr6:43621875-43621894 MsG0680032520.01.T01:intron 25.0%
! CAAAAATAAAAATTTGCAGG+GGG - Chr6:43623859-43623878 MsG0680032520.01.T01:intron 25.0%
! GGAAAATCGAATATTAGAAA+TGG - Chr6:43623999-43624018 MsG0680032520.01.T01:intron 25.0%
! GTTCAATGTAATCAGAATAT+CGG + Chr6:43626547-43626566 None:intergenic 25.0%
! TAAACTCATTTCATAGAGAA+GGG - Chr6:43623397-43623416 MsG0680032520.01.T01:intron 25.0%
! TAAAGTTAGTTCAAATGAGA+TGG + Chr6:43626481-43626500 None:intergenic 25.0%
! TAGGTTATATGAAAACTATG+AGG - Chr6:43622297-43622316 MsG0680032520.01.T01:intron 25.0%
! TATGGACTTCTTATAATAAG+AGG - Chr6:43621874-43621893 MsG0680032520.01.T01:intron 25.0%
! TGAGATTCAAACAAAAAACT+TGG + Chr6:43623257-43623276 None:intergenic 25.0%
! TTGCATAATAGAAAAAACTG+CGG - Chr6:43626123-43626142 MsG0680032520.01.T01:intron 25.0%
!! AATAAGCTGAAAACAGTTTT+TGG + Chr6:43622239-43622258 None:intergenic 25.0%
!! AATAAGCTGAAAATAGCTTT+TGG - Chr6:43622353-43622372 MsG0680032520.01.T01:intron 25.0%
!! AATGTTTTCTTATATGCAGT+TGG - Chr6:43623027-43623046 MsG0680032520.01.T01:intron 25.0%
!! ATCATAAAACATTCTCCTTT+TGG - Chr6:43627601-43627620 MsG0680032520.01.T01:CDS 25.0%
!! ATTTGGTTTACAAAATGTAG+GGG - Chr6:43624555-43624574 MsG0680032520.01.T01:intron 25.0%
!! GACACAAAAAATGTTTCTTT+TGG - Chr6:43624881-43624900 MsG0680032520.01.T01:CDS 25.0%
!! GATTTGGTTTACAAAATGTA+GGG - Chr6:43624554-43624573 MsG0680032520.01.T01:intron 25.0%
!! TAACTCTATGCAAAAGTTTT+TGG - Chr6:43622039-43622058 MsG0680032520.01.T01:intron 25.0%
!! TCCAAAAAGCATACATATTT+AGG + Chr6:43622470-43622489 None:intergenic 25.0%
!! TGGTTTCATAACTGTATTTT+CGG - Chr6:43626883-43626902 MsG0680032520.01.T01:intron 25.0%
!!! AAGTTTTTTGTTTGAATCTC+AGG - Chr6:43623256-43623275 MsG0680032520.01.T01:three_prime_UTR 25.0%
!!! CAAAAATTGTATTTTTTCCG+CGG - Chr6:43626944-43626963 MsG0680032520.01.T01:intron 25.0%
!!! CATTTATCAATCTTGTTGTT+AGG + Chr6:43622796-43622815 None:intergenic 25.0%
!!! TAAGTAGTTTGCGATAATTT+TGG - Chr6:43623743-43623762 MsG0680032520.01.T01:intron 25.0%
!!! TGATTTGGTTTACAAAATGT+AGG - Chr6:43624553-43624572 MsG0680032520.01.T01:intron 25.0%
AAGAAGTCCATAATGAACTT+TGG + Chr6:43621866-43621885 None:intergenic 30.0%
AAGTTGAACCTAAAGCAAAA+TGG + Chr6:43627084-43627103 None:intergenic 30.0%
ACACTTTCGGACAAATTATA+TGG + Chr6:43626910-43626929 None:intergenic 30.0%
ACATTGAACCTGAAGAAATT+CGG - Chr6:43626558-43626577 MsG0680032520.01.T01:intron 30.0%
AGATATGCTATGCATAGAAT+AGG - Chr6:43624274-43624293 MsG0680032520.01.T01:intron 30.0%
AGTAAACCTTGCTTATACTT+TGG - Chr6:43623904-43623923 MsG0680032520.01.T01:CDS 30.0%
ATGAGACGAAATGTAAATCA+TGG + Chr6:43623819-43623838 None:intergenic 30.0%
CATAATTCCAACTGAATACA+TGG - Chr6:43624119-43624138 MsG0680032520.01.T01:intron 30.0%
CATATCAAGCATAACCTATT+AGG + Chr6:43624527-43624546 None:intergenic 30.0%
CATGTATTCAGTTGGAATTA+TGG + Chr6:43624121-43624140 None:intergenic 30.0%
CATTAGCATATCATTGTTCT+CGG - Chr6:43626694-43626713 MsG0680032520.01.T01:intron 30.0%
CTCATATTGAGCTGAAATTT+AGG - Chr6:43624974-43624993 MsG0680032520.01.T01:intron 30.0%
GAAAGAATTTCATCTGAATC+TGG + Chr6:43626369-43626388 None:intergenic 30.0%
GAATAGTATCAAGTATGTGT+TGG + Chr6:43625281-43625300 None:intergenic 30.0%
GAGATATATGCTTTACTCAA+TGG + Chr6:43627511-43627530 None:intergenic 30.0%
GATATGCTATGCATAGAATA+GGG - Chr6:43624275-43624294 MsG0680032520.01.T01:intron 30.0%
GTAAACTCATTTCATAGAGA+AGG - Chr6:43623396-43623415 MsG0680032520.01.T01:intron 30.0%
GTAGTTCAATACATACTCTA+GGG + Chr6:43624408-43624427 None:intergenic 30.0%
TATCATTGTTAGGATGTGTT+TGG - Chr6:43622102-43622121 MsG0680032520.01.T01:intron 30.0%
TATGAAGCTTCATTTCCAAA+AGG + Chr6:43627619-43627638 None:intergenic 30.0%
TCACACGTAAAATTTGATTG+CGG + Chr6:43625033-43625052 None:intergenic 30.0%
TCCAAGATATTCCAAAATCT+AGG - Chr6:43625788-43625807 MsG0680032520.01.T01:intron 30.0%
TCTATTATCGTTGAAAGTTC+AGG - Chr6:43622700-43622719 MsG0680032520.01.T01:three_prime_UTR 30.0%
TGAATCTCCTCATCATATAT+TGG - Chr6:43623714-43623733 MsG0680032520.01.T01:intron 30.0%
TGCAATGTGAAACAAACTAA+AGG + Chr6:43624664-43624683 None:intergenic 30.0%
TGTGAAACAAACTAAAGGAA+TGG + Chr6:43624659-43624678 None:intergenic 30.0%
TTATGATCAACTTCAGACAA+TGG - Chr6:43627284-43627303 MsG0680032520.01.T01:intron 30.0%
TTTGGTCAAGCACATATATT+AGG + Chr6:43626767-43626786 None:intergenic 30.0%
! AATTATGCCGTTTCAATAAC+AGG - Chr6:43626589-43626608 MsG0680032520.01.T01:intron 30.0%
! ACAAAGTTCTCATTAGCTTA+AGG + Chr6:43622549-43622568 None:intergenic 30.0%
! ATGGATAGTATCTTTTCCAT+CGG + Chr6:43625389-43625408 None:intergenic 30.0%
! ATTATGCCGTTTCAATAACA+GGG - Chr6:43626590-43626609 MsG0680032520.01.T01:intron 30.0%
! ATTGTCTGAAGTTGATCATA+AGG + Chr6:43627285-43627304 None:intergenic 30.0%
! CAAAATCACTGCTCAATTTT+CGG - Chr6:43625951-43625970 MsG0680032520.01.T01:CDS 30.0%
! CAGTTAAGCTTTCTTTTCAA+TGG + Chr6:43626663-43626682 None:intergenic 30.0%
! CTTGATATGTAGTCTTGATT+TGG - Chr6:43624538-43624557 MsG0680032520.01.T01:intron 30.0%
! GCCTAAATATGTATGCTTTT+TGG - Chr6:43622466-43622485 MsG0680032520.01.T01:three_prime_UTR 30.0%
! TGGAACTGGTTTATAAAGAT+GGG - Chr6:43622486-43622505 MsG0680032520.01.T01:three_prime_UTR 30.0%
! TTGGAACTGGTTTATAAAGA+TGG - Chr6:43622485-43622504 MsG0680032520.01.T01:three_prime_UTR 30.0%
! TTTATCCAGAAGTATACTTC+TGG - Chr6:43624856-43624875 MsG0680032520.01.T01:CDS 30.0%
! TTTTAAACAGGATGAATGGA+CGG - Chr6:43626501-43626520 MsG0680032520.01.T01:intron 30.0%
!! AAGCACATATATTAGGTTGA+AGG + Chr6:43626760-43626779 None:intergenic 30.0%
!! AATATGCTTAGTTCTACTCA+AGG - Chr6:43622012-43622031 MsG0680032520.01.T01:intron 30.0%
!! ATATGCTTAGTTCTACTCAA+GGG - Chr6:43622013-43622032 MsG0680032520.01.T01:intron 30.0%
!! GGTGTACCATTTTTAATAGA+AGG + Chr6:43627010-43627029 None:intergenic 30.0%
!! TATCAATCTTGTTGTTAGGT+AGG + Chr6:43622792-43622811 None:intergenic 30.0%
!!! ACATTGCATTTTAACTGTTG+TGG - Chr6:43624676-43624695 MsG0680032520.01.T01:intron 30.0%
!!! ATATGTATGCTTTTTGGAAC+TGG - Chr6:43622472-43622491 MsG0680032520.01.T01:three_prime_UTR 30.0%
!!! TCCTAGATTTTGGAATATCT+TGG + Chr6:43625792-43625811 None:intergenic 30.0%
!!! TTGTTTTTATGCTGAAAGCA+TGG - Chr6:43621984-43622003 MsG0680032520.01.T01:intron 30.0%
!!! TTTAGGTTCAACTTTTTTGC+CGG - Chr6:43627090-43627109 MsG0680032520.01.T01:intron 30.0%
AAAGGGACCAAAGTTCATTA+TGG - Chr6:43621856-43621875 MsG0680032520.01.T01:intron 35.0%
AAGTACATGAAACTCAAGAC+TGG + Chr6:43623499-43623518 None:intergenic 35.0%
AAGTTCATCCCTTTATGAAC+AGG + Chr6:43626831-43626850 None:intergenic 35.0%
ACAATATCCGTTCCAAAATC+TGG + Chr6:43623120-43623139 None:intergenic 35.0%
ACAATTACAGCAGCAGTTAA+TGG + Chr6:43625127-43625146 None:intergenic 35.0%
ACCAAACTTCAGAACTCAAA+TGG - Chr6:43626781-43626800 MsG0680032520.01.T01:intron 35.0%
AGGAATGGTAAGTTATAACC+TGG + Chr6:43624644-43624663 None:intergenic 35.0%
AGGCCTAAAGCAAACTTTAA+AGG - Chr6:43627057-43627076 MsG0680032520.01.T01:intron 35.0%
AGTTCATCCCTTTATGAACA+GGG + Chr6:43626830-43626849 None:intergenic 35.0%
ATAGGGAGATCAAATAGATG+CGG + Chr6:43625577-43625596 None:intergenic 35.0%
ATCAACTTCAGACAATGGAA+CGG - Chr6:43627289-43627308 MsG0680032520.01.T01:intron 35.0%
ATCTTGGAAAACATCACTTG+AGG + Chr6:43625776-43625795 None:intergenic 35.0%
CAATTACAGCAGCAGTTAAT+GGG + Chr6:43625126-43625145 None:intergenic 35.0%
CATACATATTTAGGCCTGTT+TGG + Chr6:43622461-43622480 None:intergenic 35.0%
CATTGTTCTCGGTTAGAAAA+TGG - Chr6:43626705-43626724 MsG0680032520.01.T01:intron 35.0%
CCAATATACTATGCTTCTAC+TGG + Chr6:43627428-43627447 None:intergenic 35.0%
CTTATTTCCATAAGCTCTCT+AGG - Chr6:43622253-43622272 MsG0680032520.01.T01:intron 35.0%
GAAAACTTTGGGCTGAAATA+TGG - Chr6:43625004-43625023 MsG0680032520.01.T01:intron 35.0%
GATTGTTCGATCATATTTGC+AGG - Chr6:43625532-43625551 MsG0680032520.01.T01:intron 35.0%
GCTTATACTTTGGCTGATAT+GGG - Chr6:43623914-43623933 MsG0680032520.01.T01:CDS 35.0%
GGCCTAAAGCAAACTTTAAA+GGG - Chr6:43627058-43627077 MsG0680032520.01.T01:intron 35.0%
GGCTTTCAATACATCATCTT+CGG + Chr6:43623079-43623098 None:intergenic 35.0%
GGTAGTTCAATACATACTCT+AGG + Chr6:43624409-43624428 None:intergenic 35.0%
GTAATGTACACACATCAGAT+TGG - Chr6:43626631-43626650 MsG0680032520.01.T01:intron 35.0%
TATCAGCCAAAGTATAAGCA+AGG + Chr6:43623913-43623932 None:intergenic 35.0%
TATGATACAAAGCTAGTGTG+TGG + Chr6:43627587-43627606 None:intergenic 35.0%
TCCTTTCCAGAAAACCTAAT+AGG - Chr6:43624510-43624529 MsG0680032520.01.T01:intron 35.0%
TCGAATAAGACAATCCAAAC+AGG - Chr6:43622444-43622463 MsG0680032520.01.T01:three_prime_UTR 35.0%
TGCTTATACTTTGGCTGATA+TGG - Chr6:43623913-43623932 MsG0680032520.01.T01:CDS 35.0%
TGTGTGATGTCTTAGAAATG+CGG + Chr6:43626863-43626882 None:intergenic 35.0%
TTCTCGGTTAGAAAATGGTT+TGG - Chr6:43626710-43626729 MsG0680032520.01.T01:intron 35.0%
TTTAAACAGGATGAATGGAC+GGG - Chr6:43626502-43626521 MsG0680032520.01.T01:intron 35.0%
TTTCAGAAATGCATACCACT+CGG + Chr6:43624241-43624260 None:intergenic 35.0%
! AGCTTACGATAATGGCTTAT+AGG - Chr6:43622278-43622297 MsG0680032520.01.T01:intron 35.0%
! ATCATCTGGAAGTACACTTT+CGG + Chr6:43626923-43626942 None:intergenic 35.0%
! CAACACATACTCCTAGATTT+TGG + Chr6:43625802-43625821 None:intergenic 35.0%
! CAGATCATTGATCCAGATTT+TGG - Chr6:43623105-43623124 MsG0680032520.01.T01:intron 35.0%
! CCAGTAGAAGCATAGTATAT+TGG - Chr6:43627425-43627444 MsG0680032520.01.T01:intron 35.0%
! CGTATAATAAGTTGACCCTA+TGG + Chr6:43622215-43622234 None:intergenic 35.0%
! GCATAACCTATTAGGTTTTC+TGG + Chr6:43624519-43624538 None:intergenic 35.0%
! GGAACTGGTTTATAAAGATG+GGG - Chr6:43622487-43622506 MsG0680032520.01.T01:three_prime_UTR 35.0%
! GGAATTATGGTCTTCTTTTC+TGG + Chr6:43624108-43624127 None:intergenic 35.0%
! TCGATGAACGATAGTTTTTG+AGG + Chr6:43625157-43625176 None:intergenic 35.0%
! TCGGATGTTTTCAAAGCTTA+AGG - Chr6:43625192-43625211 MsG0680032520.01.T01:intron 35.0%
! TCTAGGATAGCTTACGATAA+TGG - Chr6:43622270-43622289 MsG0680032520.01.T01:intron 35.0%
! TCTGTGAATGTAAAGTGTTC+AGG - Chr6:43621825-43621844 MsG0680032520.01.T01:intron 35.0%
! TTATGTCCTCTAAAAACCAG+TGG - Chr6:43622862-43622881 MsG0680032520.01.T01:intron 35.0%
! TTGGTTTCTTTTGGATTTGC+TGG - Chr6:43624150-43624169 MsG0680032520.01.T01:intron 35.0%
! TTTATGCTGAAAGCATGGAA+TGG - Chr6:43621989-43622008 MsG0680032520.01.T01:intron 35.0%
!! ACCTATTAGGTTTTCTGGAA+AGG + Chr6:43624514-43624533 None:intergenic 35.0%
!! AGTGTTCAGGTTTTTCTCAA+AGG - Chr6:43621838-43621857 MsG0680032520.01.T01:intron 35.0%
!! ATGTGTTTGGACTGGTTTAT+TGG - Chr6:43622115-43622134 MsG0680032520.01.T01:intron 35.0%
!! CATTGATCCAGATTTTGGAA+CGG - Chr6:43623110-43623129 MsG0680032520.01.T01:intron 35.0%
!! CATTTCTAAGACATCACACA+TGG - Chr6:43626863-43626882 MsG0680032520.01.T01:intron 35.0%
!! CCTAAAGCTAAGGTTTTAGT+CGG - Chr6:43627171-43627190 MsG0680032520.01.T01:CDS 35.0%
!! GTGTTCAGGTTTTTCTCAAA+GGG - Chr6:43621839-43621858 MsG0680032520.01.T01:intron 35.0%
!! TCAATACATACTCTAGGGTA+GGG + Chr6:43624403-43624422 None:intergenic 35.0%
!! TGTTGGCTTGAAAATTTGTG+AGG + Chr6:43623208-43623227 None:intergenic 35.0%
!! TTAAAGGGCCATTTTGCTTT+AGG - Chr6:43627073-43627092 MsG0680032520.01.T01:intron 35.0%
!! TTCAATACATACTCTAGGGT+AGG + Chr6:43624404-43624423 None:intergenic 35.0%
!!! TGCATTTTAACTGTTGTGGT+AGG - Chr6:43624680-43624699 MsG0680032520.01.T01:intron 35.0%
AACCTGAAGAAATTCGGCAA+TGG - Chr6:43626564-43626583 MsG0680032520.01.T01:intron 40.0%
AAGCTATCCTAGAGAGCTTA+TGG + Chr6:43622263-43622282 None:intergenic 40.0%
AAGGAGCAATCTGCATCATA+TGG + Chr6:43627266-43627285 None:intergenic 40.0%
AAGTTATCAGGAAGGCTTCA+TGG + Chr6:43624951-43624970 None:intergenic 40.0%
ACATTGACATTCTTGACCCA+AGG + Chr6:43623596-43623615 None:intergenic 40.0%
ACCTGAAGAAATTCGGCAAT+GGG - Chr6:43626565-43626584 MsG0680032520.01.T01:intron 40.0%
ACTCTAACCTACGTCAGATA+TGG + Chr6:43623360-43623379 None:intergenic 40.0%
AGACATACAGTCGGCTAATA+GGG + Chr6:43625594-43625613 None:intergenic 40.0%
AGACTGTTTGACAGAGCTTA+GGG - Chr6:43622166-43622185 MsG0680032520.01.T01:intron 40.0%
AGATAGACTAAGAGTCACCA+AGG - Chr6:43622906-43622925 MsG0680032520.01.T01:intron 40.0%
AGCATGTACCCTGTTCATAA+AGG - Chr6:43626819-43626838 MsG0680032520.01.T01:intron 40.0%
AGTAACACGAGACATACAGT+CGG + Chr6:43625603-43625622 None:intergenic 40.0%
AGTTATCAGGAAGGCTTCAT+GGG + Chr6:43624950-43624969 None:intergenic 40.0%
ATACAAAGCTAGTGTGTGGA+TGG + Chr6:43627583-43627602 None:intergenic 40.0%
ATATCTGACGTAGGTTAGAG+TGG - Chr6:43623359-43623378 MsG0680032520.01.T01:intron 40.0%
ATATGCAGTTGGAAGTTCCT+CGG - Chr6:43623038-43623057 MsG0680032520.01.T01:intron 40.0%
ATCAGGCCCTGTTATTGAAA+CGG + Chr6:43626599-43626618 None:intergenic 40.0%
ATGAAGCCTTCCTGATAACT+TGG - Chr6:43624950-43624969 MsG0680032520.01.T01:CDS 40.0%
ATTACCTGACTAAACCCATC+AGG + Chr6:43626616-43626635 None:intergenic 40.0%
ATTGCCTTGCGATTTATCGT+AGG + Chr6:43626333-43626352 None:intergenic 40.0%
CAAGATCAGACCAGTTAATC+GGG - Chr6:43624735-43624754 MsG0680032520.01.T01:intron 40.0%
CAATATGAGCCCAAGTTATC+AGG + Chr6:43624963-43624982 None:intergenic 40.0%
CACGTAAAATTTGATTGCGG+TGG + Chr6:43625030-43625049 None:intergenic 40.0%
CAGTATTTAATCACGGAGCT+CGG - Chr6:43622645-43622664 MsG0680032520.01.T01:three_prime_UTR 40.0%
CATATGACAGTTTGAGAAGC+AGG - Chr6:43623547-43623566 MsG0680032520.01.T01:intron 40.0%
CATTCAACTCACTTTATGCC+AGG - Chr6:43624623-43624642 MsG0680032520.01.T01:intron 40.0%
CATTGACATTCTTGACCCAA+GGG + Chr6:43623595-43623614 None:intergenic 40.0%
CCAAGATCAGACCAGTTAAT+CGG - Chr6:43624734-43624753 MsG0680032520.01.T01:intron 40.0%
CTGAAGTCATGTGAGTAGTT+CGG - Chr6:43626977-43626996 MsG0680032520.01.T01:intron 40.0%
CTTATTTCCATAAGCTCTCC+AGG + Chr6:43622339-43622358 None:intergenic 40.0%
CTTGTCAAATGTCATCAAGC+AGG + Chr6:43625865-43625884 None:intergenic 40.0%
GCAGGAATAGAATACCTTGT+TGG + Chr6:43625847-43625866 None:intergenic 40.0%
GCATGTACCCTGTTCATAAA+GGG - Chr6:43626820-43626839 MsG0680032520.01.T01:intron 40.0%
GTCAGATATGGCTCAAACAA+TGG + Chr6:43623348-43623367 None:intergenic 40.0%
GTGTGATGTCTTAGAAATGC+GGG + Chr6:43626862-43626881 None:intergenic 40.0%
TAATAGTCGGCCTAAAGCTA+AGG - Chr6:43627161-43627180 MsG0680032520.01.T01:CDS 40.0%
TAGGCCAGACTGAAAACTTT+GGG - Chr6:43624993-43625012 MsG0680032520.01.T01:intron 40.0%
TAGTGACTCCAGAAACCATA+GGG + Chr6:43624200-43624219 None:intergenic 40.0%
TATACTTCCGAAGTGGCTTT+GGG - Chr6:43624907-43624926 MsG0680032520.01.T01:CDS 40.0%
TCATTTACCACGTCCTTGAT+CGG + Chr6:43623317-43623336 None:intergenic 40.0%
TCGATGTTGCAAAAGGAGTT+CGG - Chr6:43625173-43625192 MsG0680032520.01.T01:intron 40.0%
TCGTTCATCGATGTTGCAAA+AGG - Chr6:43625166-43625185 MsG0680032520.01.T01:intron 40.0%
TCTTCTCGCTCTCTTCTATA+GGG - Chr6:43626028-43626047 MsG0680032520.01.T01:intron 40.0%
TGAAGCCTTCCTGATAACTT+GGG - Chr6:43624951-43624970 MsG0680032520.01.T01:CDS 40.0%
TGAAGTCATGTGAGTAGTTC+GGG - Chr6:43626978-43626997 MsG0680032520.01.T01:intron 40.0%
TGAATACATGGGAGTCAAGT+TGG - Chr6:43624131-43624150 MsG0680032520.01.T01:intron 40.0%
TGTGATGTCTTAGAAATGCG+GGG + Chr6:43626861-43626880 None:intergenic 40.0%
TGTGCTAAAATACGCCAACA+AGG - Chr6:43625830-43625849 MsG0680032520.01.T01:intron 40.0%
TTAAACAGGATGAATGGACG+GGG - Chr6:43626503-43626522 MsG0680032520.01.T01:intron 40.0%
TTAGGCCAGACTGAAAACTT+TGG - Chr6:43624992-43625011 MsG0680032520.01.T01:intron 40.0%
TTAGTGACTCCAGAAACCAT+AGG + Chr6:43624201-43624220 None:intergenic 40.0%
TTCAGAACTCAAATGGCGTT+CGG - Chr6:43626788-43626807 MsG0680032520.01.T01:intron 40.0%
TTCTTCTCGCTCTCTTCTAT+AGG - Chr6:43626027-43626046 MsG0680032520.01.T01:intron 40.0%
TTGACTCCCATGTATTCAGT+TGG + Chr6:43624129-43624148 None:intergenic 40.0%
TTGCAGATCGATAAAGCTCT+AGG - Chr6:43623162-43623181 MsG0680032520.01.T01:intron 40.0%
TTGTTAGGATGTGTTTGGAC+TGG - Chr6:43622107-43622126 MsG0680032520.01.T01:intron 40.0%
TTTCAATAACAGGGCCTGAT+GGG - Chr6:43626599-43626618 MsG0680032520.01.T01:intron 40.0%
! ATACTGCATGTTGATGAGTG+TGG + Chr6:43621503-43621522 None:intergenic 40.0%
! CCGACTAAAACCTTAGCTTT+AGG + Chr6:43627174-43627193 None:intergenic 40.0%
! GCTTAAGGTTGATCAAGCAT+TGG + Chr6:43622534-43622553 None:intergenic 40.0%
! GGAACGGATATTGTTACTTG+TGG - Chr6:43623126-43623145 MsG0680032520.01.T01:intron 40.0%
! GTTGGTTAGAAGCATGAGAT+TGG + Chr6:43625263-43625282 None:intergenic 40.0%
! TGGATCAATGATCTGAGACA+AGG + Chr6:43623100-43623119 None:intergenic 40.0%
! TTGGAAGTATACTTCCGAAG+TGG - Chr6:43624900-43624919 MsG0680032520.01.T01:CDS 40.0%
!! GAACGATAGTTTTTGAGGAG+TGG + Chr6:43625152-43625171 None:intergenic 40.0%
!! GCCATTTGAGTTCTGAAGTT+TGG + Chr6:43626785-43626804 None:intergenic 40.0%
!! GGCCCTTTAAAGTTTGCTTT+AGG + Chr6:43627063-43627082 None:intergenic 40.0%
!! TCACTTTGTTGTTGGGTTGT+AGG - Chr6:43626149-43626168 MsG0680032520.01.T01:intron 40.0%
!! TTGAATCTCAGGTGTCGTTT+CGG - Chr6:43623267-43623286 MsG0680032520.01.T01:three_prime_UTR 40.0%
!! TTTTAACTGTTGTGGTAGGC+TGG - Chr6:43624684-43624703 MsG0680032520.01.T01:intron 40.0%
!!! ATGTGTCATTTTGATGCCGA+TGG - Chr6:43625370-43625389 MsG0680032520.01.T01:CDS 40.0%
!!! CTTCAACCACTGGTTTTTAG+AGG + Chr6:43622871-43622890 None:intergenic 40.0%
!!! GGAGTCAAGTTGGTTTCTTT+TGG - Chr6:43624141-43624160 MsG0680032520.01.T01:intron 40.0%
!!! TCTTTTGGATTTGCTGGACA+AGG - Chr6:43624156-43624175 MsG0680032520.01.T01:intron 40.0%
AACCAGTGGTTGAAGAAAGC+TGG - Chr6:43622876-43622895 MsG0680032520.01.T01:intron 45.0%
AACTTCTCACTACTACCGAG+TGG - Chr6:43624223-43624242 MsG0680032520.01.T01:intron 45.0%
AAGGTTGTAATCGCAGACGT+AGG + Chr6:43622680-43622699 None:intergenic 45.0%
ACTCGGTAGTAGTGAGAAGT+TGG + Chr6:43624224-43624243 None:intergenic 45.0%
AGTTGAATGTCTCCTGTTCC+CGG + Chr6:43624612-43624631 None:intergenic 45.0%
ATCAAGCTGACCCGATTAAC+TGG + Chr6:43624748-43624767 None:intergenic 45.0%
ATGAGCCCAAGTTATCAGGA+AGG + Chr6:43624959-43624978 None:intergenic 45.0%
CAACAGTGAGACGGAATGAT+CGG - Chr6:43626398-43626417 MsG0680032520.01.T01:intron 45.0%
CAGACAATGGAACGGTTAGT+TGG - Chr6:43627297-43627316 MsG0680032520.01.T01:intron 45.0%
CTGGTCTGATCTTGGCTTAA+GGG + Chr6:43624729-43624748 None:intergenic 45.0%
CTGTCAAACAGTCTCAGAAG+TGG + Chr6:43622160-43622179 None:intergenic 45.0%
CTTACCAACTATGGTCTCTC+CGG - Chr6:43623978-43623997 MsG0680032520.01.T01:intron 45.0%
CTTTAGGCCTCATTCATCCT+TGG + Chr6:43627047-43627066 None:intergenic 45.0%
GAAATCGTCTGTAAACCTGC+TGG + Chr6:43623665-43623684 None:intergenic 45.0%
GAGACATACAGTCGGCTAAT+AGG + Chr6:43625595-43625614 None:intergenic 45.0%
GAGACTGTTTGACAGAGCTT+AGG - Chr6:43622165-43622184 MsG0680032520.01.T01:intron 45.0%
GGAAGTTGCTCTGCGAATAA+CGG + Chr6:43623644-43623663 None:intergenic 45.0%
GGCATTCCACTATCTCAGAA+CGG + Chr6:43625737-43625756 None:intergenic 45.0%
GTATACTTCCGAAGTGGCTT+TGG - Chr6:43624906-43624925 MsG0680032520.01.T01:CDS 45.0%
GTGACCTACGATAAATCGCA+AGG - Chr6:43626326-43626345 MsG0680032520.01.T01:intron 45.0%
GTGATGTCTTAGAAATGCGG+GGG + Chr6:43626860-43626879 None:intergenic 45.0%
GTTTCAATAACAGGGCCTGA+TGG - Chr6:43626598-43626617 MsG0680032520.01.T01:intron 45.0%
GTTTGAGAAGCAGGCAAATG+AGG - Chr6:43623556-43623575 MsG0680032520.01.T01:intron 45.0%
GTTTGAGCCATATCTGACGT+AGG - Chr6:43623350-43623369 MsG0680032520.01.T01:intron 45.0%
TAAACAGGATGAATGGACGG+GGG - Chr6:43626504-43626523 MsG0680032520.01.T01:intron 45.0%
TATACTTCCGGACACATGTG+TGG + Chr6:43624811-43624830 None:intergenic 45.0%
TATCGCTGTATCCAGTTGCA+AGG - Chr6:43623691-43623710 MsG0680032520.01.T01:CDS 45.0%
TCCCATTGCCGAATTTCTTC+AGG + Chr6:43626569-43626588 None:intergenic 45.0%
TCTCTCAAACCATCTCGCAA+GGG - Chr6:43622402-43622421 MsG0680032520.01.T01:intron 45.0%
TGATGTCTTAGAAATGCGGG+GGG + Chr6:43626859-43626878 None:intergenic 45.0%
TGGAAAGCAGGTCTACTTGT+CGG + Chr6:43626059-43626078 None:intergenic 45.0%
TGGTCCAAGCTTACCAACTA+TGG - Chr6:43623969-43623988 MsG0680032520.01.T01:intron 45.0%
TTCTCGACAACAGCTACACA+AGG + Chr6:43625349-43625368 None:intergenic 45.0%
TTGCAGGTTGTTCAGCAGTT+TGG - Chr6:43625548-43625567 MsG0680032520.01.T01:intron 45.0%
! AAAAATTTGCAGGGGGGTGT+AGG - Chr6:43623866-43623885 MsG0680032520.01.T01:CDS 45.0%
! ACTGGTCTGATCTTGGCTTA+AGG + Chr6:43624730-43624749 None:intergenic 45.0%
! ATACTTCCGAAGTGGCTTTG+GGG - Chr6:43624908-43624927 MsG0680032520.01.T01:CDS 45.0%
! CCCATCCAGAAGTATACTTC+CGG + Chr6:43624823-43624842 None:intergenic 45.0%
! CCGATTAACTGGTCTGATCT+TGG + Chr6:43624737-43624756 None:intergenic 45.0%
! CCGGAAGTATACTTCTGGAT+GGG - Chr6:43624820-43624839 MsG0680032520.01.T01:intron 45.0%
! GGTGTTTTCATAAGCTGTCC+TGG - Chr6:43622318-43622337 MsG0680032520.01.T01:intron 45.0%
! GTCGTCCAGAAGTATACTTC+TGG + Chr6:43624864-43624883 None:intergenic 45.0%
! GTGGTGGAAAAAGAAGCTCT+CGG + Chr6:43624792-43624811 None:intergenic 45.0%
! TCAGCCCAAAGTTTTCAGTC+TGG + Chr6:43625000-43625019 None:intergenic 45.0%
! TCCGGAAGTATACTTCTGGA+TGG - Chr6:43624819-43624838 MsG0680032520.01.T01:intron 45.0%
! TCTGCGAATAACGGTTTTGC+TGG + Chr6:43623635-43623654 None:intergenic 45.0%
! TGTGTCCGGAAGTATACTTC+TGG - Chr6:43624815-43624834 MsG0680032520.01.T01:intron 45.0%
! TTGTTGTTAGGTAGGTCGCT+CGG + Chr6:43622784-43622803 None:intergenic 45.0%
! TTTTCCACCACACATGTGTC+CGG - Chr6:43624801-43624820 MsG0680032520.01.T01:intron 45.0%
! TTTTCCGGAGAGACCATAGT+TGG + Chr6:43623985-43624004 None:intergenic 45.0%
!! AGATAGTGGAATGCCTGAAG+TGG - Chr6:43625742-43625761 MsG0680032520.01.T01:intron 45.0%
!! AGCTATCCGTTCTGAGATAG+TGG - Chr6:43625728-43625747 MsG0680032520.01.T01:intron 45.0%
!! ATACATACTCTAGGGTAGGG+TGG + Chr6:43624400-43624419 None:intergenic 45.0%
!! GAGACCATAGTTGGTAAGCT+TGG + Chr6:43623976-43623995 None:intergenic 45.0%
!! GATCGATAAAGCTCTAGGAG+AGG - Chr6:43623167-43623186 MsG0680032520.01.T01:intron 45.0%
!! TGATGAGTGTGGTGGTTTTG+AGG + Chr6:43621492-43621511 None:intergenic 45.0%
!!! AGTGTGGTGGTTTTGAGGAA+TGG + Chr6:43621487-43621506 None:intergenic 45.0%
!! TATAATAAGAATATATTAAA+AGG + Chr6:43621538-43621557 None:intergenic 5.0%
AAGCTGTCCTGGAGAGCTTA+TGG - Chr6:43622329-43622348 MsG0680032520.01.T01:intron 50.0%
ACAGACTGCACAGACATCCT+TGG + Chr6:43622926-43622945 None:intergenic 50.0%
ACTTCAGATGTGCACATCCG+CGG + Chr6:43626964-43626983 None:intergenic 50.0%
AGCAAAAAGACCACACGTGC+CGG + Chr6:43627112-43627131 None:intergenic 50.0%
AGCCAGCTTTCTTCAACCAC+TGG + Chr6:43622881-43622900 None:intergenic 50.0%
AGGCTGGAATTTCACTCGCT+TGG - Chr6:43624700-43624719 MsG0680032520.01.T01:intron 50.0%
AGGTTTCAGGATCTCAGGCA+TGG - Chr6:43625416-43625435 MsG0680032520.01.T01:CDS 50.0%
AGTCGAGCCAAGGATGAATG+AGG - Chr6:43627037-43627056 MsG0680032520.01.T01:intron 50.0%
ATCGCAGACGTAGGCACATT+TGG + Chr6:43622671-43622690 None:intergenic 50.0%
CAAGGACGTGCAATTATGCG+CGG - Chr6:43624174-43624193 MsG0680032520.01.T01:intron 50.0%
CTCTCTCAAACCATCTCGCA+AGG - Chr6:43622401-43622420 MsG0680032520.01.T01:intron 50.0%
GAGGAGATTCACCTTGCAAC+TGG + Chr6:43623705-43623724 None:intergenic 50.0%
GCTAGAGCTGCTTCTGTTGA+AGG - Chr6:43621921-43621940 MsG0680032520.01.T01:intron 50.0%
GCTGATATGGGTGCTAGAGT+TGG - Chr6:43623926-43623945 MsG0680032520.01.T01:CDS 50.0%
GGAAGTTCCTCGGTATCAAC+TGG - Chr6:43623048-43623067 MsG0680032520.01.T01:intron 50.0%
GGTAGAGGTTTCAGGATCTC+AGG - Chr6:43625411-43625430 MsG0680032520.01.T01:CDS 50.0%
TAGTGGAATGCCTGAAGTGG+TGG - Chr6:43625745-43625764 MsG0680032520.01.T01:CDS 50.0%
TCATTCCGTCTCACTGTTGC+AGG + Chr6:43626397-43626416 None:intergenic 50.0%
TCGGTTAGAGCTCACTACAC+CGG - Chr6:43623286-43623305 MsG0680032520.01.T01:exon 50.0%
TGACATAAGCCCTTGCGAGA+TGG + Chr6:43622414-43622433 None:intergenic 50.0%
TGAGAAGCAGGCAAATGAGG+TGG - Chr6:43623559-43623578 MsG0680032520.01.T01:intron 50.0%
TGCATCCTGCAACAGTGAGA+CGG - Chr6:43626389-43626408 MsG0680032520.01.T01:intron 50.0%
TTAGGTAGGTCGCTCGGTTT+AGG + Chr6:43622778-43622797 None:intergenic 50.0%
! CCTTGTTATCGACATGCCTC+CGG - Chr6:43624590-43624609 MsG0680032520.01.T01:intron 50.0%
! CTGCATGTTGATGAGTGTGG+TGG + Chr6:43621500-43621519 None:intergenic 50.0%
! CTTGTTATCGACATGCCTCC+GGG - Chr6:43624591-43624610 MsG0680032520.01.T01:intron 50.0%
! TGCGGCAGTCACTTTGTTGT+TGG - Chr6:43626141-43626160 MsG0680032520.01.T01:intron 50.0%
! TGTTGGGTTGTAGGCACAAC+TGG - Chr6:43626158-43626177 MsG0680032520.01.T01:intron 50.0%
!! GCGGCAGTCACTTTGTTGTT+GGG - Chr6:43626142-43626161 MsG0680032520.01.T01:intron 50.0%
!! TACTTCCGAAGTGGCTTTGG+GGG - Chr6:43624909-43624928 MsG0680032520.01.T01:CDS 50.0%
!!! AACTTTTTTGCCGGCACGTG+TGG - Chr6:43627099-43627118 MsG0680032520.01.T01:intron 50.0%
ACGTCCTTGATCGGACATGC+CGG + Chr6:43623308-43623327 None:intergenic 55.0%
ACTTCCGGACACATGTGTGG+TGG + Chr6:43624808-43624827 None:intergenic 55.0%
ATGATCGGTCTGCTCGAGTG+TGG - Chr6:43626413-43626432 MsG0680032520.01.T01:intron 55.0%
GAAGCAGGCAAATGAGGTGG+TGG - Chr6:43623562-43623581 MsG0680032520.01.T01:intron 55.0%
TACACCGGCATGTCCGATCA+AGG - Chr6:43623301-43623320 MsG0680032520.01.T01:CDS 55.0%
TGAATGTCTCCTGTTCCCGG+AGG + Chr6:43624609-43624628 None:intergenic 55.0%
TGAGGATCAGCCACCACTTC+AGG + Chr6:43625758-43625777 None:intergenic 55.0%
TGCAATTATGCGCGGCCCTA+TGG - Chr6:43624182-43624201 MsG0680032520.01.T01:intron 55.0%
TGTCTTAGAAATGCGGGGGG+TGG + Chr6:43626856-43626875 None:intergenic 55.0%
TTCGCAGAGCAACTTCCAGC+AGG - Chr6:43623647-43623666 MsG0680032520.01.T01:intron 55.0%
! CCGGAGGCATGTCGATAACA+AGG + Chr6:43624593-43624612 None:intergenic 55.0%
! GGCTGTTCCAGTTGATACCG+AGG + Chr6:43623058-43623077 None:intergenic 55.0%
!! AGGGCCTGATGGGTTTAGTC+AGG - Chr6:43626609-43626628 MsG0680032520.01.T01:intron 55.0%
ACCACAGCTGAGTCGAGCCA+AGG - Chr6:43627027-43627046 MsG0680032520.01.T01:intron 60.0%
ATCGACATGCCTCCGGGAAC+AGG - Chr6:43624597-43624616 MsG0680032520.01.T01:intron 60.0%
ATGCGCGGCCCTATGGTTTC+TGG - Chr6:43624189-43624208 MsG0680032520.01.T01:intron 60.0%
GGCATGTCCGATCAAGGACG+TGG - Chr6:43623307-43623326 MsG0680032520.01.T01:CDS 60.0%
! TCCTTGGCTCGACTCAGCTG+TGG + Chr6:43627031-43627050 None:intergenic 60.0%
!! TTCCGAAGTGGCTTTGGGGG+CGG - Chr6:43624912-43624931 MsG0680032520.01.T01:CDS 60.0%
TCCCGCCCCCAAAGCCACTT+CGG + Chr6:43624917-43624936 None:intergenic 65.0%
! AGGTGGTGGCAGTGCTCCCT+TGG - Chr6:43623576-43623595 MsG0680032520.01.T01:intron 65.0%
! GGTGGTGGCAGTGCTCCCTT+GGG - Chr6:43623577-43623596 MsG0680032520.01.T01:intron 65.0%
!! TCCGAAGTGGCTTTGGGGGC+GGG - Chr6:43624913-43624932 MsG0680032520.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 43621411 43627662 43621411 ID=MsG0680032520.01;Name=MsG0680032520.01
Chr6 mRNA 43621411 43627662 43621411 ID=MsG0680032520.01.T01;Parent=MsG0680032520.01;Name=MsG0680032520.01.T01;_AED=0.49;_eAED=0.49;_QI=38|0.85|0.86|1|0.78|0.73|15|696|370
Chr6 exon 43627555 43627662 43627555 ID=MsG0680032520.01.T01:exon:11661;Parent=MsG0680032520.01.T01
Chr6 exon 43627131 43627262 43627131 ID=MsG0680032520.01.T01:exon:11662;Parent=MsG0680032520.01.T01
Chr6 exon 43625885 43626027 43625885 ID=MsG0680032520.01.T01:exon:11663;Parent=MsG0680032520.01.T01
Chr6 exon 43625745 43625795 43625745 ID=MsG0680032520.01.T01:exon:11664;Parent=MsG0680032520.01.T01
Chr6 exon 43625361 43625516 43625361 ID=MsG0680032520.01.T01:exon:11665;Parent=MsG0680032520.01.T01
Chr6 exon 43625053 43625130 43625053 ID=MsG0680032520.01.T01:exon:11666;Parent=MsG0680032520.01.T01
Chr6 exon 43624829 43624971 43624829 ID=MsG0680032520.01.T01:exon:11667;Parent=MsG0680032520.01.T01
Chr6 exon 43624429 43624498 43624429 ID=MsG0680032520.01.T01:exon:11668;Parent=MsG0680032520.01.T01
Chr6 exon 43623860 43623955 43623860 ID=MsG0680032520.01.T01:exon:11669;Parent=MsG0680032520.01.T01
Chr6 exon 43623662 43623730 43623662 ID=MsG0680032520.01.T01:exon:11670;Parent=MsG0680032520.01.T01
Chr6 exon 43623468 43623519 43623468 ID=MsG0680032520.01.T01:exon:11671;Parent=MsG0680032520.01.T01
Chr6 exon 43623222 43623343 43623222 ID=MsG0680032520.01.T01:exon:11672;Parent=MsG0680032520.01.T01
Chr6 exon 43622639 43622758 43622639 ID=MsG0680032520.01.T01:exon:11673;Parent=MsG0680032520.01.T01
Chr6 exon 43622443 43622562 43622443 ID=MsG0680032520.01.T01:exon:11674;Parent=MsG0680032520.01.T01
Chr6 exon 43621411 43621797 43621411 ID=MsG0680032520.01.T01:exon:11675;Parent=MsG0680032520.01.T01
Chr6 five_prime_UTR 43627625 43627662 43627625 ID=MsG0680032520.01.T01:five_prime_utr;Parent=MsG0680032520.01.T01
Chr6 CDS 43627555 43627624 43627555 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43627131 43627262 43627131 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43625885 43626027 43625885 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43625745 43625795 43625745 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43625361 43625516 43625361 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43625053 43625130 43625053 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43624829 43624971 43624829 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43624429 43624498 43624429 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43623860 43623955 43623860 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43623662 43623730 43623662 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43623468 43623519 43623468 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 CDS 43623291 43623343 43623291 ID=MsG0680032520.01.T01:cds;Parent=MsG0680032520.01.T01
Chr6 three_prime_UTR 43623222 43623290 43623222 ID=MsG0680032520.01.T01:three_prime_utr;Parent=MsG0680032520.01.T01
Chr6 three_prime_UTR 43622639 43622758 43622639 ID=MsG0680032520.01.T01:three_prime_utr;Parent=MsG0680032520.01.T01
Chr6 three_prime_UTR 43622443 43622562 43622443 ID=MsG0680032520.01.T01:three_prime_utr;Parent=MsG0680032520.01.T01
Chr6 three_prime_UTR 43621411 43621797 43621411 ID=MsG0680032520.01.T01:three_prime_utr;Parent=MsG0680032520.01.T01
Gene Sequence

>MsG0680032520.01.T01

ATGCAAACTGTTCAAGCTTCATCACACTTTTCTATCCATTCCTCAAAACCACCACACTCATCAACATGCAGTTTGGTTACTTCTTCTGTGAATGTAAAGTGTTCAGGTTTTTCTCAAAGGGACCAAAGTTCATTATGGACTTCTTATAATAAGAGGGTTATCTTGAAAAGCTCTTTTTCTGCTAGAGCTGCTTCTGTTGAAGTTGGAAGTTCCTCGGTATCAACTGGAACAGCCGAAGATGATGTATTGAAAGCCTTGTCTCAGATCATTGATCCAGATTTTGGAACGGATATTGTTACTTGTGGATTTGTGAAAGATTTGCAGATCGATAAAGCTCTAGGAGAGGTGTCGTTTCGGTTAGAGCTCACTACACCGGCATGTCCGATCAAGGACGTGTTTGAGAAGCAGGCAAATGAGGTGGTGGCAGTGCTCCCTTGGGTCAAGAATGTCAATGTTACGATGTCTGCGCAGCCAGCAAAACCGTTATTCGCAGAGCAACTTCCAGCAGGTTTACAGACGATTTCAAATATTATCGCTGTATCCAGTTGCAAGAGTTGGTATATTGATGCTGATATTTATGGTCCAAGCTTACCAACTATGGTCTCTCCGGAAAATCGAATATTAGAAATGAATCCAGAAAAGAAGACCATAATTCCAACTGAATACATGGGAGTCAAGTTGGTTTCTTTTGGATTTGCTGGACAAGGACGTGCAATTATGCGCGGCCCTATGGTTTCTGGAGTCACTAACCAACTTCTCACTACTACCGAGTGGGGCGAGCTTGATTACCTTGTTATCGACATGCCTCCGGGAACAGGAGACATTCAACTCACTTTATGCCAGATAGTCCCATTAACTGCTGCTGTAATTGTTACCACTCCTCAAAAACTATCGTTCATCGATGTTGCAAAAGGAGTTCGGATGTTTTCAAAGCTTAAGGTACCTTGTGTAGCTGTTGTCGAGAACATGTGTCATTTTGATGCCGATGGAAAAGATACTATCCATTTGGTTGTTCAGCAGTTTGGATACCGCATCTATTTGATCTCCCTATTAGCCGACTCTATCCGTTCTGAGATAGTGGAATGCCTGAAGTGGTGGCTGATCCTCAAGTGA

Protein sequence

>MsG0680032520.01.T01

MQTVQASSHFSIHSSKPPHSSTCSLVTSSVNVKCSGFSQRDQSSLWTSYNKRVILKSSFSARAASVEVGSSSVSTGTAEDDVLKALSQIIDPDFGTDIVTCGFVKDLQIDKALGEVSFRLELTTPACPIKDVFEKQANEVVAVLPWVKNVNVTMSAQPAKPLFAEQLPAGLQTISNIIAVSSCKSWYIDADIYGPSLPTMVSPENRILEMNPEKKTIIPTEYMGVKLVSFGFAGQGRAIMRGPMVSGVTNQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQIVPLTAAVIVTTPQKLSFIDVAKGVRMFSKLKVPCVAVVENMCHFDADGKDTIHLVVQQFGYRIYLISLLADSIRSEIVECLKWWLILK*