AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004542.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004542.01.T01 MTR_1g082215 94.937 632 32 0 1 632 1 632 0.0 1161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004542.01.T01 AT5G27330 25.354 706 369 16 1 629 1 625 1.11e-35 142
MsG0180004542.01.T01 AT3G05130 24.714 700 367 18 1 619 1 621 1.80e-24 108

Find 131 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACCCAGATCACTGAATT+AGG 0.168138 1:-79396583 MsG0180004542.01.T01:CDS
AGGGAGAAGATGAAGGATTT+AGG 0.187545 1:-79396499 MsG0180004542.01.T01:CDS
AACAAATAAGGTGGAGAATT+TGG 0.209500 1:-79395492 MsG0180004542.01.T01:CDS
GGGAGAAGATGAAGGATTTA+GGG 0.269179 1:-79396498 MsG0180004542.01.T01:CDS
TGGTGGTGGTTGTGGGGTTA+AGG 0.273734 1:+79396792 None:intergenic
TGGTGGATGGTGGTGGTTGT+GGG 0.274390 1:+79396785 None:intergenic
TGTGGTCTAGGGTTTGAGAT+TGG 0.283893 1:+79396818 None:intergenic
TGTCTCAGGTTAATCATTAT+AGG 0.291389 1:-79395805 MsG0180004542.01.T01:CDS
TGTTTATAGGACTCTGGATA+TGG 0.296957 1:-79396020 MsG0180004542.01.T01:CDS
GCTTGAGAAGGACTGGGATT+TGG 0.303984 1:-79396377 MsG0180004542.01.T01:CDS
TTGGTGGATGGTGGTGGTTG+TGG 0.310014 1:+79396784 None:intergenic
CACTGTTGCACATGTGTCTA+AGG 0.328802 1:-79395222 MsG0180004542.01.T01:CDS
GTGGTCTAGGGTTTGAGATT+GGG 0.339700 1:+79396819 None:intergenic
ATATGACGAGGCAACAAATA+AGG 0.371426 1:-79395504 MsG0180004542.01.T01:CDS
AGGGGAGGGATACTGTTTAT+AGG 0.374876 1:-79396033 MsG0180004542.01.T01:CDS
AGACCCAGATCACTGAATTA+GGG 0.375216 1:-79396582 MsG0180004542.01.T01:CDS
GATGTTGGAAAATAGTAAAT+TGG 0.379157 1:-79396101 MsG0180004542.01.T01:CDS
GTTGAAGGAGAAGATTGATT+TGG 0.396255 1:-79396314 MsG0180004542.01.T01:CDS
CTGAATGCGGTTTCTGTGAT+TGG 0.397932 1:+79396696 None:intergenic
AATCAATTCAAAGCAAACTT+TGG 0.409026 1:-79395258 MsG0180004542.01.T01:CDS
AGCTAGAGATGAGGTTGAGA+AGG 0.410360 1:-79395948 MsG0180004542.01.T01:CDS
GAAACCCTAATTCAGTGATC+TGG 0.411589 1:+79396578 None:intergenic
GAAGGAGAAGAAAGAGGCTG+AGG 0.417267 1:-79396287 MsG0180004542.01.T01:CDS
GGATATGGTTAAGAGAGAAT+TGG 0.418650 1:-79396005 MsG0180004542.01.T01:CDS
TCTGCGTCTGATGCACATAA+AGG 0.420247 1:-79395050 MsG0180004542.01.T01:CDS
GCAGTCACAAGTTGTGGAAA+TGG 0.421287 1:-79395702 MsG0180004542.01.T01:CDS
TTAAGAGAGAATTGGAGAAT+AGG 0.439435 1:-79395997 MsG0180004542.01.T01:CDS
AAAATTGTAGCTAGAGAGTC+TGG 0.443169 1:-79395848 MsG0180004542.01.T01:CDS
GAAGGATTTAGGGTTGTGTC+TGG 0.450014 1:-79396488 MsG0180004542.01.T01:CDS
GAAGATTGATTTGGTGGTGA+AGG 0.452814 1:-79396305 MsG0180004542.01.T01:CDS
TTGAGGAGCTTGAGAAGGAC+TGG 0.455210 1:-79396384 MsG0180004542.01.T01:CDS
TCATCATTGGTGGATGGTGG+TGG 0.456751 1:+79396778 None:intergenic
TAAATTGGTTGGTGAGAAGA+AGG 0.457718 1:-79396086 MsG0180004542.01.T01:CDS
CTGAACAGATGGGTCATCAT+TGG 0.459753 1:+79396765 None:intergenic
TAAGAATGCTGTTGAGGAAG+TGG 0.466160 1:-79395639 MsG0180004542.01.T01:CDS
GAGGTTGAGAAGGTTAAAGT+TGG 0.473556 1:-79395938 MsG0180004542.01.T01:CDS
AGAGGAATGTTGAGAAGATG+AGG 0.480560 1:-79396456 MsG0180004542.01.T01:CDS
GTATGAGGTTTCTGTTCAAA+GGG 0.485446 1:-79396518 MsG0180004542.01.T01:CDS
AATTTGGAGTTGCAAGTTGT+GGG 0.486287 1:-79395476 MsG0180004542.01.T01:CDS
ACGGAAACTGTTTGATGAAA+AGG 0.486916 1:-79396425 MsG0180004542.01.T01:CDS
AAACAATGGATTACTGTCTC+AGG 0.487360 1:-79395819 MsG0180004542.01.T01:CDS
GAAGGAAAGGGAAATGATGT+TGG 0.488608 1:-79396116 MsG0180004542.01.T01:CDS
GAATGTTGAGAAGATGAGGT+TGG 0.491925 1:-79396452 MsG0180004542.01.T01:CDS
AGTATGAGGTTTCTGTTCAA+AGG 0.495201 1:-79396519 MsG0180004542.01.T01:CDS
TCTTGGACTTGAGCTGCAGC+AGG 0.495279 1:-79396230 MsG0180004542.01.T01:CDS
GCGTGGGAAGATTCGTGAAA+TGG 0.496463 1:-79396164 MsG0180004542.01.T01:CDS
AAAAGGCTGAGAAAGAAAGA+AGG 0.498100 1:-79396408 MsG0180004542.01.T01:CDS
TGTTCAAAGGGAGAAGATGA+AGG 0.500438 1:-79396506 MsG0180004542.01.T01:CDS
TACTGAATTGAAGCTTAAGC+AGG 0.508643 1:-79395543 MsG0180004542.01.T01:CDS
GAATTTGCAGTCACAAGTTG+TGG 0.509082 1:-79395708 MsG0180004542.01.T01:CDS
GAAGGAGAAGATTGATTTGG+TGG 0.509164 1:-79396311 MsG0180004542.01.T01:CDS
AGTAGCAGCAGAGGTTAAAC+CGG 0.511423 1:+79395013 None:intergenic
GAATTTGGAGTTGCAAGTTG+TGG 0.512655 1:-79395477 MsG0180004542.01.T01:CDS
AGGTTGCTGTGGAGAAGGAA+AGG 0.512829 1:-79396129 MsG0180004542.01.T01:CDS
TATTGAGGTTGCTGTGGAGA+AGG 0.514158 1:-79396134 MsG0180004542.01.T01:CDS
TGAAATGGAGGAAACTATTG+AGG 0.516918 1:-79396149 MsG0180004542.01.T01:CDS
CACATAAAGGTAAGAACTTG+TGG 0.519666 1:-79395037 MsG0180004542.01.T01:CDS
TGTACTGAAGGGTGTTGTAG+AGG 0.520552 1:-79395876 MsG0180004542.01.T01:CDS
TGAGCTGCAGCAGGTTAATG+AGG 0.523686 1:-79396221 MsG0180004542.01.T01:CDS
AGCACAAATAGTAGCAGCAG+AGG 0.529268 1:+79395004 None:intergenic
TTGAGGAAGTGGAGCTTGAG+AGG 0.534554 1:-79395628 MsG0180004542.01.T01:CDS
TTGAGAGTTTGACTGAGGGG+AGG 0.535341 1:-79396048 MsG0180004542.01.T01:CDS
GGATACTGTTTATAGGACTC+TGG 0.536791 1:-79396026 MsG0180004542.01.T01:CDS
CAAGAAAGCATTCAAAGCTA+AGG 0.537974 1:-79395120 MsG0180004542.01.T01:CDS
AATGAGACAAACAAGGAGCT+AGG 0.538433 1:-79395386 MsG0180004542.01.T01:CDS
AATGCGGTTTCTGTGATTGG+TGG 0.539119 1:+79396699 None:intergenic
AGTATTGAGAGTTTGACTGA+GGG 0.540460 1:-79396052 MsG0180004542.01.T01:CDS
AAACCCTAATTCAGTGATCT+GGG 0.540876 1:+79396579 None:intergenic
TGAGAGTTTGACTGAGGGGA+GGG 0.543135 1:-79396047 MsG0180004542.01.T01:CDS
AGAAGATGAGGTTGGATGCA+CGG 0.544378 1:-79396444 MsG0180004542.01.T01:CDS
GGGTCATCATTGGTGGATGG+TGG 0.544512 1:+79396775 None:intergenic
CTTTGAGAAGAACGTTGTTG+AGG 0.544572 1:+79396725 None:intergenic
AAACAAAGTGGAGGATTTGG+AGG 0.546631 1:-79395573 MsG0180004542.01.T01:CDS
GGTGGATGGTGGTGGTTGTG+GGG 0.547005 1:+79396786 None:intergenic
GGTGGTGAAGGAGAAGAAAG+AGG 0.547289 1:-79396293 MsG0180004542.01.T01:CDS
GGTTGGTGAGAAGAAGGAGA+TGG 0.555356 1:-79396080 MsG0180004542.01.T01:CDS
ATTCAAAGCTAAGGATGAGC+TGG 0.556043 1:-79395111 MsG0180004542.01.T01:CDS
AATGAAGAGGCGGTGATGCG+TGG 0.557344 1:-79396181 MsG0180004542.01.T01:CDS
AAAGGCTGAGAAAGAAAGAA+GGG 0.557380 1:-79396407 MsG0180004542.01.T01:CDS
TGAGGAGCTTGAGAAGGACT+GGG 0.558130 1:-79396383 MsG0180004542.01.T01:CDS
AAGGAGAAGAAAGAGGCTGA+GGG 0.558642 1:-79396286 MsG0180004542.01.T01:CDS
CAAAGCTAACCACGCCGCCA+TGG 0.560141 1:-79396665 MsG0180004542.01.T01:CDS
TGAAGGGTGTTGTAGAGGAG+TGG 0.561592 1:-79395871 MsG0180004542.01.T01:CDS
TGAGAGGGATAACGTCAGAA+AGG 0.563589 1:-79395612 MsG0180004542.01.T01:CDS
ATGAAGAGGCGGTGATGCGT+GGG 0.564133 1:-79396180 MsG0180004542.01.T01:CDS
AACAGATGGGTCATCATTGG+TGG 0.564931 1:+79396768 None:intergenic
AAGTATTGAGAGTTTGACTG+AGG 0.565456 1:-79396053 MsG0180004542.01.T01:CDS
TGAGAATGCTGAAGCTGAGT+TGG 0.565780 1:-79395438 MsG0180004542.01.T01:CDS
GAAGGTGATTGATGAGTTGA+AGG 0.567020 1:-79396329 MsG0180004542.01.T01:CDS
TGTGTCTGGAGAGTGAGAAG+AGG 0.568416 1:-79396474 MsG0180004542.01.T01:CDS
TGCAGCTCAAAGAGAGTGCA+AGG 0.569535 1:-79395309 MsG0180004542.01.T01:CDS
ATGTTATAAGAATGCTGTTG+AGG 0.573650 1:-79395645 MsG0180004542.01.T01:CDS
GAGAGGGATAACGTCAGAAA+GGG 0.575443 1:-79395611 MsG0180004542.01.T01:CDS
AAGGGTTGAGGAGCTTGAGA+AGG 0.580524 1:-79396389 MsG0180004542.01.T01:CDS
TTGGAAAATAGTAAATTGGT+TGG 0.582640 1:-79396097 MsG0180004542.01.T01:CDS
GAAGAGCTCGCGGAATGAAG+AGG 0.582918 1:-79396194 MsG0180004542.01.T01:CDS
TGAGAAAGAAAGAAGGGTTG+AGG 0.586230 1:-79396401 MsG0180004542.01.T01:CDS
GGTTGCTGTGGAGAAGGAAA+GGG 0.589431 1:-79396128 MsG0180004542.01.T01:CDS
AAAGGTAAGAACTTGTGGAC+CGG 0.591726 1:-79395032 MsG0180004542.01.T01:CDS
AATGAAGTCGTTAAGTTGCA+AGG 0.591972 1:-79395908 MsG0180004542.01.T01:CDS
GTATTGAGAGTTTGACTGAG+GGG 0.596823 1:-79396051 MsG0180004542.01.T01:CDS
GTCACAAGTTGTGGAAATGG+AGG 0.603940 1:-79395699 MsG0180004542.01.T01:CDS
TAGGCAGCGTGAGGTTGATG+AGG 0.607173 1:-79395978 MsG0180004542.01.T01:CDS
CAAAGCTAAGGATGAGCTGG+TGG 0.611150 1:-79395108 MsG0180004542.01.T01:CDS
TGAGGGTGTGAATAGTACTC+AGG 0.615912 1:-79396269 MsG0180004542.01.T01:CDS
CTTCAACATCCATGGCGGCG+TGG 0.620836 1:+79396656 None:intergenic
TGAGGAAGTGGAGCTTGAGA+GGG 0.621802 1:-79395627 MsG0180004542.01.T01:CDS
TTGACTGCATATGTTGCTAA+AGG 0.622390 1:-79394975 MsG0180004542.01.T01:CDS
AGGTGAAATAAGTGTACTGA+AGG 0.625603 1:-79395888 MsG0180004542.01.T01:CDS
GTTGCAAGTTGTGGGACTGA+AGG 0.629045 1:-79395468 MsG0180004542.01.T01:CDS
GATGGGTCATCATTGGTGGA+TGG 0.631583 1:+79396772 None:intergenic
CAACAGTAAGAAGTTTGATG+AGG 0.631997 1:-79395747 MsG0180004542.01.T01:CDS
TGACGAGGCAACAAATAAGG+TGG 0.639359 1:-79395501 MsG0180004542.01.T01:CDS
ACTCTCTTTGAGCTGCAATG+AGG 0.642172 1:+79395315 None:intergenic
CTTTGAGAAGAAGCTGAATG+CGG 0.642555 1:+79396683 None:intergenic
TGGGAAGATTCGTGAAATGG+AGG 0.643009 1:-79396161 MsG0180004542.01.T01:CDS
GGAAACTATTGAGGTTGCTG+TGG 0.643834 1:-79396140 MsG0180004542.01.T01:CDS
TGCTGAAGCTGAGTTGGTCA+AGG 0.646705 1:-79395432 MsG0180004542.01.T01:CDS
GGCGAGAAGAGCTAGAGATG+AGG 0.648893 1:-79395957 MsG0180004542.01.T01:CDS
CGTTAATCAAAACATCTATG+CGG 0.652889 1:+79395360 None:intergenic
CATCATGAAAAGATATGACG+AGG 0.665707 1:-79395516 MsG0180004542.01.T01:CDS
ACATGCTTCTTCTCACCGCG+AGG 0.668840 1:+79395182 None:intergenic
GAGCTCGCGGAATGAAGAGG+CGG 0.670628 1:-79396191 MsG0180004542.01.T01:CDS
GGGTGTGAATAGTACTCAGG+AGG 0.677679 1:-79396266 MsG0180004542.01.T01:CDS
TCGCGGTGAGAAGAAGCATG+TGG 0.678181 1:-79395180 MsG0180004542.01.T01:CDS
TTTCTCTTCAACATCCATGG+CGG 0.680764 1:+79396651 None:intergenic
GAAGATGAATGAGACAAACA+AGG 0.682202 1:-79395393 MsG0180004542.01.T01:CDS
ATTGGAGAATAGGCAGCGTG+AGG 0.687102 1:-79395987 MsG0180004542.01.T01:CDS
GGTGAAATAAGTGTACTGAA+GGG 0.705436 1:-79395887 MsG0180004542.01.T01:CDS
ACATGTGTCTAAGGAAAGTG+TGG 0.709564 1:-79395213 MsG0180004542.01.T01:CDS
AGTGTGGAAGTGATTCCTCG+CGG 0.788854 1:-79395197 MsG0180004542.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATCAATTCAAAGCAAACTT+TGG - Chr1:79396554-79396573 MsG0180004542.01.T01:CDS 25.0%
! GATGTTGGAAAATAGTAAAT+TGG - Chr1:79395711-79395730 MsG0180004542.01.T01:CDS 25.0%
! TGATGAAAAGAAAAACAAAG+TGG - Chr1:79396227-79396246 MsG0180004542.01.T01:CDS 25.0%
! TTGGAAAATAGTAAATTGGT+TGG - Chr1:79395715-79395734 MsG0180004542.01.T01:CDS 25.0%
!!! AGATGTTTTGATTAACGAAA+AGG - Chr1:79396458-79396477 MsG0180004542.01.T01:CDS 25.0%
AACAAATAAGGTGGAGAATT+TGG - Chr1:79396320-79396339 MsG0180004542.01.T01:CDS 30.0%
ATGTTATAAGAATGCTGTTG+AGG - Chr1:79396167-79396186 MsG0180004542.01.T01:CDS 30.0%
CGTTAATCAAAACATCTATG+CGG + Chr1:79396455-79396474 None:intergenic 30.0%
GAAAAATGAGATTGAGTATG+AGG - Chr1:79395279-79395298 MsG0180004542.01.T01:CDS 30.0%
TGAAAAGAAAAACAAAGTGG+AGG - Chr1:79396230-79396249 MsG0180004542.01.T01:CDS 30.0%
TGTCTCAGGTTAATCATTAT+AGG - Chr1:79396007-79396026 MsG0180004542.01.T01:CDS 30.0%
TTAAGAGAGAATTGGAGAAT+AGG - Chr1:79395815-79395834 MsG0180004542.01.T01:CDS 30.0%
! AGATTTTGAATCTGAACAGA+TGG + Chr1:79395061-79395080 None:intergenic 30.0%
! ATTTTTCTCTTCAACATCCA+TGG + Chr1:79395167-79395186 None:intergenic 30.0%
! CAAAGAAAACATCGTTTTGA+AGG + Chr1:79395201-79395220 None:intergenic 30.0%
! GATTTTGAATCTGAACAGAT+GGG + Chr1:79395060-79395079 None:intergenic 30.0%
! GGTATTTGTTCCTTTCTTTT+TGG + Chr1:79394975-79394994 None:intergenic 30.0%
! TGTGAAGAAGTCAATTTTGT+CGG - Chr1:79395459-79395478 MsG0180004542.01.T01:CDS 30.0%
AAAAGGCTGAGAAAGAAAGA+AGG - Chr1:79395404-79395423 MsG0180004542.01.T01:CDS 35.0%
AAAATTGTAGCTAGAGAGTC+TGG - Chr1:79395964-79395983 MsG0180004542.01.T01:CDS 35.0%
AAACCCTAATTCAGTGATCT+GGG + Chr1:79395236-79395255 None:intergenic 35.0%
AAAGGCTGAGAAAGAAAGAA+GGG - Chr1:79395405-79395424 MsG0180004542.01.T01:CDS 35.0%
ACGGAAACTGTTTGATGAAA+AGG - Chr1:79395387-79395406 MsG0180004542.01.T01:CDS 35.0%
AGGTGAAATAAGTGTACTGA+AGG - Chr1:79395924-79395943 MsG0180004542.01.T01:CDS 35.0%
AGTATGAGGTTTCTGTTCAA+AGG - Chr1:79395293-79395312 MsG0180004542.01.T01:CDS 35.0%
ATATGACGAGGCAACAAATA+AGG - Chr1:79396308-79396327 MsG0180004542.01.T01:CDS 35.0%
CAACAGTAAGAAGTTTGATG+AGG - Chr1:79396065-79396084 MsG0180004542.01.T01:CDS 35.0%
CACATAAAGGTAAGAACTTG+TGG - Chr1:79396775-79396794 MsG0180004542.01.T01:CDS 35.0%
CATCATGAAAAGATATGACG+AGG - Chr1:79396296-79396315 MsG0180004542.01.T01:CDS 35.0%
GAAAAACAAAGTGGAGGATT+TGG - Chr1:79396236-79396255 MsG0180004542.01.T01:CDS 35.0%
GAAGATGAATGAGACAAACA+AGG - Chr1:79396419-79396438 MsG0180004542.01.T01:CDS 35.0%
GGATATGGTTAAGAGAGAAT+TGG - Chr1:79395807-79395826 MsG0180004542.01.T01:CDS 35.0%
GGTGAAATAAGTGTACTGAA+GGG - Chr1:79395925-79395944 MsG0180004542.01.T01:CDS 35.0%
GTATGAGGTTTCTGTTCAAA+GGG - Chr1:79395294-79395313 MsG0180004542.01.T01:CDS 35.0%
GTTGAAGGAGAAGATTGATT+TGG - Chr1:79395498-79395517 MsG0180004542.01.T01:CDS 35.0%
TACTGAATTGAAGCTTAAGC+AGG - Chr1:79396269-79396288 MsG0180004542.01.T01:CDS 35.0%
TGAAATGGAGGAAACTATTG+AGG - Chr1:79395663-79395682 MsG0180004542.01.T01:CDS 35.0%
TGATGAGGAGAAAAAGAAAG+TGG - Chr1:79396080-79396099 MsG0180004542.01.T01:CDS 35.0%
TGTTTATAGGACTCTGGATA+TGG - Chr1:79395792-79395811 MsG0180004542.01.T01:CDS 35.0%
TTGACTGCATATGTTGCTAA+AGG - Chr1:79396837-79396856 MsG0180004542.01.T01:CDS 35.0%
! AATGAAGTCGTTAAGTTGCA+AGG - Chr1:79395904-79395923 MsG0180004542.01.T01:CDS 35.0%
! AATTTGGAGTTGCAAGTTGT+GGG - Chr1:79396336-79396355 MsG0180004542.01.T01:CDS 35.0%
! AGTATTGAGAGTTTGACTGA+GGG - Chr1:79395760-79395779 MsG0180004542.01.T01:CDS 35.0%
! CTCGTCATATCTTTTCATGA+TGG + Chr1:79396298-79396317 None:intergenic 35.0%
! GAGGTGAAGATTTTCAATCT+TGG - Chr1:79395565-79395584 MsG0180004542.01.T01:CDS 35.0%
!! AAACAATGGATTACTGTCTC+AGG - Chr1:79395993-79396012 MsG0180004542.01.T01:CDS 35.0%
!! AAGTATTGAGAGTTTGACTG+AGG - Chr1:79395759-79395778 MsG0180004542.01.T01:CDS 35.0%
!! CAAGAAAGCATTCAAAGCTA+AGG - Chr1:79396692-79396711 MsG0180004542.01.T01:CDS 35.0%
!! TAAATTGGTTGGTGAGAAGA+AGG - Chr1:79395726-79395745 MsG0180004542.01.T01:CDS 35.0%
AAACAAAGTGGAGGATTTGG+AGG - Chr1:79396239-79396258 MsG0180004542.01.T01:CDS 40.0%
AAAGGTAAGAACTTGTGGAC+CGG - Chr1:79396780-79396799 MsG0180004542.01.T01:CDS 40.0%
AAGACCCAGATCACTGAATT+AGG - Chr1:79395229-79395248 MsG0180004542.01.T01:CDS 40.0%
AATGAGACAAACAAGGAGCT+AGG - Chr1:79396426-79396445 MsG0180004542.01.T01:CDS 40.0%
ACATGTGTCTAAGGAAAGTG+TGG - Chr1:79396599-79396618 MsG0180004542.01.T01:CDS 40.0%
AGACCCAGATCACTGAATTA+GGG - Chr1:79395230-79395249 MsG0180004542.01.T01:CDS 40.0%
AGAGGAATGTTGAGAAGATG+AGG - Chr1:79395356-79395375 MsG0180004542.01.T01:CDS 40.0%
AGGGAGAAGATGAAGGATTT+AGG - Chr1:79395313-79395332 MsG0180004542.01.T01:CDS 40.0%
ATTCAAAGCTAAGGATGAGC+TGG - Chr1:79396701-79396720 MsG0180004542.01.T01:CDS 40.0%
GAAACCCTAATTCAGTGATC+TGG + Chr1:79395237-79395256 None:intergenic 40.0%
GAAGGAAAGGGAAATGATGT+TGG - Chr1:79395696-79395715 MsG0180004542.01.T01:CDS 40.0%
GAATGTTGAGAAGATGAGGT+TGG - Chr1:79395360-79395379 MsG0180004542.01.T01:CDS 40.0%
GAATTTGCAGTCACAAGTTG+TGG - Chr1:79396104-79396123 MsG0180004542.01.T01:CDS 40.0%
GAGGTTGAGAAGGTTAAAGT+TGG - Chr1:79395874-79395893 MsG0180004542.01.T01:CDS 40.0%
GAGTCTGGAGAGAAAAACAA+TGG - Chr1:79395979-79395998 MsG0180004542.01.T01:CDS 40.0%
GGATACTGTTTATAGGACTC+TGG - Chr1:79395786-79395805 MsG0180004542.01.T01:CDS 40.0%
GGGAGAAGATGAAGGATTTA+GGG - Chr1:79395314-79395333 MsG0180004542.01.T01:CDS 40.0%
GTATTGAGAGTTTGACTGAG+GGG - Chr1:79395761-79395780 MsG0180004542.01.T01:CDS 40.0%
TAAGAATGCTGTTGAGGAAG+TGG - Chr1:79396173-79396192 MsG0180004542.01.T01:CDS 40.0%
TGAAGAGAAAAATCTCGCCT+TGG - Chr1:79395174-79395193 MsG0180004542.01.T01:CDS 40.0%
TGAGAAAGAAAGAAGGGTTG+AGG - Chr1:79395411-79395430 MsG0180004542.01.T01:CDS 40.0%
TGTTCAAAGGGAGAAGATGA+AGG - Chr1:79395306-79395325 MsG0180004542.01.T01:CDS 40.0%
TTTCTCTTCAACATCCATGG+CGG + Chr1:79395164-79395183 None:intergenic 40.0%
! CTTTGAGAAGAACGTTGTTG+AGG + Chr1:79395090-79395109 None:intergenic 40.0%
! CTTTGAGAAGAAGCTGAATG+CGG + Chr1:79395132-79395151 None:intergenic 40.0%
! GAAGGTGATTGATGAGTTGA+AGG - Chr1:79395483-79395502 MsG0180004542.01.T01:CDS 40.0%
! GAAGTCAATTTTGTCGGTGA+AGG - Chr1:79395465-79395484 MsG0180004542.01.T01:CDS 40.0%
! GAATTTGGAGTTGCAAGTTG+TGG - Chr1:79396335-79396354 MsG0180004542.01.T01:CDS 40.0%
! GTCTTTTGCTGAAGAACTTG+AGG - Chr1:79396665-79396684 MsG0180004542.01.T01:CDS 40.0%
!! GAAGATTGATTTGGTGGTGA+AGG - Chr1:79395507-79395526 MsG0180004542.01.T01:CDS 40.0%
!! GAAGGAGAAGATTGATTTGG+TGG - Chr1:79395501-79395520 MsG0180004542.01.T01:CDS 40.0%
!! GGTTAAGGTTTTGTGGTCTA+GGG + Chr1:79395008-79395027 None:intergenic 40.0%
!!! AACATCGTTTTGAAGGTCCA+AGG + Chr1:79395194-79395213 None:intergenic 40.0%
AACAGATGGGTCATCATTGG+TGG + Chr1:79395047-79395066 None:intergenic 45.0%
AAGGAGAAGAAAGAGGCTGA+GGG - Chr1:79395526-79395545 MsG0180004542.01.T01:CDS 45.0%
AATGCGGTTTCTGTGATTGG+TGG + Chr1:79395116-79395135 None:intergenic 45.0%
ACTCTCTTTGAGCTGCAATG+AGG + Chr1:79396500-79396519 None:intergenic 45.0%
AGAAGATGAGGTTGGATGCA+CGG - Chr1:79395368-79395387 MsG0180004542.01.T01:CDS 45.0%
AGCACAAATAGTAGCAGCAG+AGG + Chr1:79396811-79396830 None:intergenic 45.0%
AGCTAGAGATGAGGTTGAGA+AGG - Chr1:79395864-79395883 MsG0180004542.01.T01:CDS 45.0%
AGGGGAGGGATACTGTTTAT+AGG - Chr1:79395779-79395798 MsG0180004542.01.T01:CDS 45.0%
AGTAGCAGCAGAGGTTAAAC+CGG + Chr1:79396802-79396821 None:intergenic 45.0%
CACTGTTGCACATGTGTCTA+AGG - Chr1:79396590-79396609 MsG0180004542.01.T01:CDS 45.0%
CTGAACAGATGGGTCATCAT+TGG + Chr1:79395050-79395069 None:intergenic 45.0%
CTGAATGCGGTTTCTGTGAT+TGG + Chr1:79395119-79395138 None:intergenic 45.0%
GAGAGGGATAACGTCAGAAA+GGG - Chr1:79396201-79396220 MsG0180004542.01.T01:CDS 45.0%
GCAGTCACAAGTTGTGGAAA+TGG - Chr1:79396110-79396129 MsG0180004542.01.T01:CDS 45.0%
GGAAACTATTGAGGTTGCTG+TGG - Chr1:79395672-79395691 MsG0180004542.01.T01:CDS 45.0%
GTCACAAGTTGTGGAAATGG+AGG - Chr1:79396113-79396132 MsG0180004542.01.T01:CDS 45.0%
TATTGAGGTTGCTGTGGAGA+AGG - Chr1:79395678-79395697 MsG0180004542.01.T01:CDS 45.0%
TCTGCGTCTGATGCACATAA+AGG - Chr1:79396762-79396781 MsG0180004542.01.T01:CDS 45.0%
TGACGAGGCAACAAATAAGG+TGG - Chr1:79396311-79396330 MsG0180004542.01.T01:CDS 45.0%
TGAGAATGCTGAAGCTGAGT+TGG - Chr1:79396374-79396393 MsG0180004542.01.T01:CDS 45.0%
TGAGAGGGATAACGTCAGAA+AGG - Chr1:79396200-79396219 MsG0180004542.01.T01:CDS 45.0%
TGGGAAGATTCGTGAAATGG+AGG - Chr1:79395651-79395670 MsG0180004542.01.T01:CDS 45.0%
! GAAGGATTTAGGGTTGTGTC+TGG - Chr1:79395324-79395343 MsG0180004542.01.T01:CDS 45.0%
! GTGGTCTAGGGTTTGAGATT+GGG + Chr1:79394996-79395015 None:intergenic 45.0%
! GTTGTGGGGTTAAGGTTTTG+TGG + Chr1:79395015-79395034 None:intergenic 45.0%
! TGAGGGTGTGAATAGTACTC+AGG - Chr1:79395543-79395562 MsG0180004542.01.T01:CDS 45.0%
! TGTGGTCTAGGGTTTGAGAT+TGG + Chr1:79394997-79395016 None:intergenic 45.0%
!! GGGTTAAGGTTTTGTGGTCT+AGG + Chr1:79395009-79395028 None:intergenic 45.0%
!! TGTACTGAAGGGTGTTGTAG+AGG - Chr1:79395936-79395955 MsG0180004542.01.T01:CDS 45.0%
!!! ATGAGGTTTTGAAGAGCTCG+CGG - Chr1:79395608-79395627 MsG0180004542.01.T01:CDS 45.0%
AAGGGTTGAGGAGCTTGAGA+AGG - Chr1:79395423-79395442 MsG0180004542.01.T01:CDS 50.0%
AGGTTGCTGTGGAGAAGGAA+AGG - Chr1:79395683-79395702 MsG0180004542.01.T01:CDS 50.0%
AGTGTGGAAGTGATTCCTCG+CGG - Chr1:79396615-79396634 MsG0180004542.01.T01:CDS 50.0%
ATTGGAGAATAGGCAGCGTG+AGG - Chr1:79395825-79395844 MsG0180004542.01.T01:CDS 50.0%
CAAAGCTAAGGATGAGCTGG+TGG - Chr1:79396704-79396723 MsG0180004542.01.T01:CDS 50.0%
GAAGGAGAAGAAAGAGGCTG+AGG - Chr1:79395525-79395544 MsG0180004542.01.T01:CDS 50.0%
GATGGGTCATCATTGGTGGA+TGG + Chr1:79395043-79395062 None:intergenic 50.0%
GCGTGGGAAGATTCGTGAAA+TGG - Chr1:79395648-79395667 MsG0180004542.01.T01:CDS 50.0%
GCTTGAGAAGGACTGGGATT+TGG - Chr1:79395435-79395454 MsG0180004542.01.T01:CDS 50.0%
GGGTGTGAATAGTACTCAGG+AGG - Chr1:79395546-79395565 MsG0180004542.01.T01:CDS 50.0%
GGTGGTGAAGGAGAAGAAAG+AGG - Chr1:79395519-79395538 MsG0180004542.01.T01:CDS 50.0%
GGTTGCTGTGGAGAAGGAAA+GGG - Chr1:79395684-79395703 MsG0180004542.01.T01:CDS 50.0%
GTTGCAAGTTGTGGGACTGA+AGG - Chr1:79396344-79396363 MsG0180004542.01.T01:CDS 50.0%
TGAGAGTTTGACTGAGGGGA+GGG - Chr1:79395765-79395784 MsG0180004542.01.T01:CDS 50.0%
TGAGCTGCAGCAGGTTAATG+AGG - Chr1:79395591-79395610 MsG0180004542.01.T01:CDS 50.0%
TGAGGAAGTGGAGCTTGAGA+GGG - Chr1:79396185-79396204 MsG0180004542.01.T01:CDS 50.0%
TGAGGAGCTTGAGAAGGACT+GGG - Chr1:79395429-79395448 MsG0180004542.01.T01:CDS 50.0%
TGTGTCTGGAGAGTGAGAAG+AGG - Chr1:79395338-79395357 MsG0180004542.01.T01:CDS 50.0%
TTGAGAGTTTGACTGAGGGG+AGG - Chr1:79395764-79395783 MsG0180004542.01.T01:CDS 50.0%
TTGAGGAAGTGGAGCTTGAG+AGG - Chr1:79396184-79396203 MsG0180004542.01.T01:CDS 50.0%
TTGAGGAGCTTGAGAAGGAC+TGG - Chr1:79395428-79395447 MsG0180004542.01.T01:CDS 50.0%
! TCATCATTGGTGGATGGTGG+TGG + Chr1:79395037-79395056 None:intergenic 50.0%
! TGCAGCTCAAAGAGAGTGCA+AGG - Chr1:79396503-79396522 MsG0180004542.01.T01:CDS 50.0%
!! GGTTGGTGAGAAGAAGGAGA+TGG - Chr1:79395732-79395751 MsG0180004542.01.T01:CDS 50.0%
!! TGAAGGGTGTTGTAGAGGAG+TGG - Chr1:79395941-79395960 MsG0180004542.01.T01:CDS 50.0%
!! TGCTGAAGCTGAGTTGGTCA+AGG - Chr1:79396380-79396399 MsG0180004542.01.T01:CDS 50.0%
AATGAAGAGGCGGTGATGCG+TGG - Chr1:79395631-79395650 MsG0180004542.01.T01:CDS 55.0%
ACATGCTTCTTCTCACCGCG+AGG + Chr1:79396633-79396652 None:intergenic 55.0%
ATGAAGAGGCGGTGATGCGT+GGG - Chr1:79395632-79395651 MsG0180004542.01.T01:CDS 55.0%
GAAGAGCTCGCGGAATGAAG+AGG - Chr1:79395618-79395637 MsG0180004542.01.T01:CDS 55.0%
GGCGAGAAGAGCTAGAGATG+AGG - Chr1:79395855-79395874 MsG0180004542.01.T01:CDS 55.0%
TCTTGGACTTGAGCTGCAGC+AGG - Chr1:79395582-79395601 MsG0180004542.01.T01:CDS 55.0%
! GGGTCATCATTGGTGGATGG+TGG + Chr1:79395040-79395059 None:intergenic 55.0%
! TCGCGGTGAGAAGAAGCATG+TGG - Chr1:79396632-79396651 MsG0180004542.01.T01:CDS 55.0%
!! TAGGCAGCGTGAGGTTGATG+AGG - Chr1:79395834-79395853 MsG0180004542.01.T01:CDS 55.0%
!! TGGTGGATGGTGGTGGTTGT+GGG + Chr1:79395030-79395049 None:intergenic 55.0%
!! TGGTGGTGGTTGTGGGGTTA+AGG + Chr1:79395023-79395042 None:intergenic 55.0%
!! TTGGTGGATGGTGGTGGTTG+TGG + Chr1:79395031-79395050 None:intergenic 55.0%
CAAAGCTAACCACGCCGCCA+TGG - Chr1:79395147-79395166 MsG0180004542.01.T01:CDS 60.0%
CTTCAACATCCATGGCGGCG+TGG + Chr1:79395159-79395178 None:intergenic 60.0%
GAGCTCGCGGAATGAAGAGG+CGG - Chr1:79395621-79395640 MsG0180004542.01.T01:CDS 60.0%
!! GGTGGATGGTGGTGGTTGTG+GGG + Chr1:79395029-79395048 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 79394968 79396866 79394968 ID=MsG0180004542.01;Name=MsG0180004542.01
Chr1 mRNA 79394968 79396866 79394968 ID=MsG0180004542.01.T01;Parent=MsG0180004542.01;Name=MsG0180004542.01.T01;_AED=0.11;_eAED=0.11;_QI=0|-1|0|1|-1|1|1|0|632
Chr1 exon 79394968 79396866 79394968 ID=MsG0180004542.01.T01:exon:45605;Parent=MsG0180004542.01.T01
Chr1 CDS 79394968 79396866 79394968 ID=MsG0180004542.01.T01:cds;Parent=MsG0180004542.01.T01
Gene Sequence

>MsG0180004542.01.T01

ATGGCCAAAAAGAAAGGAACAAATACCCAATCTCAAACCCTAGACCACAAAACCTTAACCCCACAACCACCACCATCCACCAATGATGACCCATCTGTTCAGATTCAAAATCTCAAGAACCTCAACAACGTTCTTCTCAAAGAAACCACCAATCACAGAAACCGCATTCAGCTTCTTCTCAAAGCTAACCACGCCGCCATGGATGTTGAAGAGAAAAATCTCGCCTTGGACCTTCAAAACGATGTTTTCTTTGTTTTTGTTAAGACCCAGATCACTGAATTAGGGTTTCGCTTTGAAAAGATCGTTGAAGAGAAAAATGAGATTGAGTATGAGGTTTCTGTTCAAAGGGAGAAGATGAAGGATTTAGGGTTGTGTCTGGAGAGTGAGAAGAGGAATGTTGAGAAGATGAGGTTGGATGCACGGAAACTGTTTGATGAAAAGGCTGAGAAAGAAAGAAGGGTTGAGGAGCTTGAGAAGGACTGGGATTTGGCTGTGAAGAAGTCAATTTTGTCGGTGAAGGTGATTGATGAGTTGAAGGAGAAGATTGATTTGGTGGTGAAGGAGAAGAAAGAGGCTGAGGGTGTGAATAGTACTCAGGAGGTGAAGATTTTCAATCTTGGACTTGAGCTGCAGCAGGTTAATGAGGTTTTGAAGAGCTCGCGGAATGAAGAGGCGGTGATGCGTGGGAAGATTCGTGAAATGGAGGAAACTATTGAGGTTGCTGTGGAGAAGGAAAGGGAAATGATGTTGGAAAATAGTAAATTGGTTGGTGAGAAGAAGGAGATGGAGAAAAGTATTGAGAGTTTGACTGAGGGGAGGGATACTGTTTATAGGACTCTGGATATGGTTAAGAGAGAATTGGAGAATAGGCAGCGTGAGGTTGATGAGGCGAGAAGAGCTAGAGATGAGGTTGAGAAGGTTAAAGTTGGCTATGAGAATGAAGTCGTTAAGTTGCAAGGTGAAATAAGTGTACTGAAGGGTGTTGTAGAGGAGTGGAAAATTGTAGCTAGAGAGTCTGGAGAGAAAAACAATGGATTACTGTCTCAGGTTAATCATTATAGGAATGTTATTGATGAAGTGAAGTCTATGAATGAGCTCAACAGTAAGAAGTTTGATGAGGAGAAAAAGAAAGTGGAGAATTTGCAGTCACAAGTTGTGGAAATGGAGGAAAAAATTGAGCTATTACTCTCTCAAGTTCAATGTTATAAGAATGCTGTTGAGGAAGTGGAGCTTGAGAGGGATAACGTCAGAAAGGGATATGATGAAAAGAAAAACAAAGTGGAGGATTTGGAGGCACATGTTACTGAATTGAAGCTTAAGCAGGATACCATCATGAAAAGATATGACGAGGCAACAAATAAGGTGGAGAATTTGGAGTTGCAAGTTGTGGGACTGAAGGAAAAAATTGAGAATGCTGAAGCTGAGTTGGTCAAGGTGAGTAGCGAGAAAGAGAAGATGAATGAGACAAACAAGGAGCTAGGAAGCCGCATAGATGTTTTGATTAACGAAAAGGATGCTACACATAGTAGCCTCATTGCAGCTCAAAGAGAGTGCAAGGATTTGAGAGCTAAGTTTGAGTCTTCTAGAATCAATTCAAAGCAAACTTTGGAATTGTTGAAGAGCACTGTTGCACATGTGTCTAAGGAAAGTGTGGAAGTGATTCCTCGCGGTGAGAAGAAGCATGTGGAAGAAATTCAGTCTTTTGCTGAAGAACTTGAGGCAATCAAGAAAGCATTCAAAGCTAAGGATGAGCTGGTGGATGATATGAAGAAACAAGTTGTATCACTGCAGAAATCTGCGTCTGATGCACATAAAGGTAAGAACTTGTGGACCGGTTTAACCTCTGCTGCTACTATTTGTGCTTTTGCGTTGACTGCATATGTTGCTAAAGGACGTTGA

Protein sequence

>MsG0180004542.01.T01

MAKKKGTNTQSQTLDHKTLTPQPPPSTNDDPSVQIQNLKNLNNVLLKETTNHRNRIQLLLKANHAAMDVEEKNLALDLQNDVFFVFVKTQITELGFRFEKIVEEKNEIEYEVSVQREKMKDLGLCLESEKRNVEKMRLDARKLFDEKAEKERRVEELEKDWDLAVKKSILSVKVIDELKEKIDLVVKEKKEAEGVNSTQEVKIFNLGLELQQVNEVLKSSRNEEAVMRGKIREMEETIEVAVEKEREMMLENSKLVGEKKEMEKSIESLTEGRDTVYRTLDMVKRELENRQREVDEARRARDEVEKVKVGYENEVVKLQGEISVLKGVVEEWKIVARESGEKNNGLLSQVNHYRNVIDEVKSMNELNSKKFDEEKKKVENLQSQVVEMEEKIELLLSQVQCYKNAVEEVELERDNVRKGYDEKKNKVEDLEAHVTELKLKQDTIMKRYDEATNKVENLELQVVGLKEKIENAEAELVKVSSEKEKMNETNKELGSRIDVLINEKDATHSSLIAAQRECKDLRAKFESSRINSKQTLELLKSTVAHVSKESVEVIPRGEKKHVEEIQSFAEELEAIKKAFKAKDELVDDMKKQVVSLQKSASDAHKGKNLWTGLTSAATICAFALTAYVAKGR*