AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028209.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028209.01.T01 MTR_6g016335 97.333 225 6 0 57 281 192 416 1.98e-165 468
MsG0580028209.01.T01 MTR_1g102550 80.408 245 48 0 37 281 150 394 9.01e-147 420
MsG0580028209.01.T01 MTR_6g016320 95.161 62 3 0 190 251 11 72 1.68e-38 130
MsG0580028209.01.T01 MTR_1g083640 95.652 46 2 0 7 52 1 46 1.76e-20 89.4
MsG0580028209.01.T01 MTR_5g071590 82.609 46 5 1 7 52 1 43 1.68e-15 73.6
MsG0580028209.01.T01 MTR_6g016325 90.625 32 3 0 250 281 30 61 3.32e-13 65.9
MsG0580028209.01.T01 MTR_4g008820 71.154 52 0 1 1 52 119 155 4.27e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028209.01.T01 AT1G19920 90.667 225 21 0 57 281 182 406 1.54e-157 448
MsG0580028209.01.T01 AT3G22890 76.136 264 63 0 18 281 129 392 1.47e-146 419
MsG0580028209.01.T01 AT4G14680 75.379 264 65 0 18 281 131 394 3.20e-144 414
MsG0580028209.01.T01 AT4G14680 75.379 264 65 0 18 281 131 394 1.46e-143 414
MsG0580028209.01.T01 AT5G43780 85.333 225 33 0 57 281 172 396 1.90e-143 412

Find 73 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGCTGGAAATTGGCTTAT+TGG 0.194116 5:+76591868 MsG0580028209.01.T01:CDS
ACAGGATGAAGCAATAAAAT+TGG 0.258258 5:-76592096 None:intergenic
TCATTGTTCCAGCTGGAAAT+TGG 0.287994 5:+76591860 MsG0580028209.01.T01:CDS
TTAACAAGGCATGACCATTA+TGG 0.305379 5:-76592029 None:intergenic
TTGGCTTATTGGAGGAGATT+TGG 0.324311 5:+76591879 MsG0580028209.01.T01:CDS
GAATTCTTCACGAAGTTGTT+TGG 0.332061 5:-76591956 None:intergenic
GATCAAGAACTCCATCTTCT+AGG 0.341116 5:-76593754 None:intergenic
CGCCTTTCAGTTAAGAAATC+CGG 0.363354 5:+76592005 MsG0580028209.01.T01:CDS
AGACCATCATTGTATTTGAT+AGG 0.381497 5:-76591913 None:intergenic
AATTCTTCACGAAGTTGTTT+GGG 0.383556 5:-76591955 None:intergenic
TGTTACTCCCCATTGAAATC+AGG 0.389401 5:+76591246 MsG0580028209.01.T01:CDS
TCCTCAACGTAAGGCAATCC+TGG 0.418206 5:-76591835 None:intergenic
TGGTCGCGATCCCGCTGGTA+TGG 0.419632 5:+76593889 MsG0580028209.01.T01:CDS
ACGATGTTCCGTTAGATGTC+AGG 0.428955 5:+76592139 MsG0580028209.01.T01:CDS
GAAACTTCATCACTGATTCA+TGG 0.432651 5:+76591165 MsG0580028209.01.T01:CDS
TTATTGCTTCATCCTGTTGG+AGG 0.437861 5:+76592102 MsG0580028209.01.T01:CDS
ATAGAAACAATGGTTGTCTC+TGG 0.438582 5:-76593776 None:intergenic
GGGTCATCCAACTGAGAAAC+GGG 0.451624 5:+76593910 MsG0580028209.01.T01:CDS
TGTCCCACCCTGATTTCAAT+GGG 0.453847 5:-76591254 None:intergenic
TGTTCATAGGTCCTAGAAGA+TGG 0.456208 5:+76593743 MsG0580028209.01.T01:intron
TCCTGGAGCAGTTGTTCCCC+AGG 0.464917 5:-76591818 None:intergenic
GCATGCCATTGTACTTCACT+TGG 0.465203 5:-76593827 None:intergenic
AACACTCAGTTGTCCACTCT+CGG 0.465270 5:-76591142 None:intergenic
CCATCGCCTATGCATTATGC+AGG 0.471656 5:+76593803 MsG0580028209.01.T01:CDS
GGTCGCGATCCCGCTGGTAT+GGG 0.473901 5:+76593890 MsG0580028209.01.T01:CDS
GGCGCCGACTTCTATATTGT+TGG 0.488847 5:+76593869 MsG0580028209.01.T01:CDS
GACTTGTATGACCCTGATCA+TGG 0.490265 5:+76593932 MsG0580028209.01.T01:CDS
TACAAGTCCCGTTTCTCAGT+TGG 0.492506 5:-76593917 None:intergenic
GTGTCCCACCCTGATTTCAA+TGG 0.494995 5:-76591255 None:intergenic
TGGGTCATCCAACTGAGAAA+CGG 0.499633 5:+76593909 MsG0580028209.01.T01:CDS
ACCTGGGGAACAACTGCTCC+AGG 0.502578 5:+76591817 MsG0580028209.01.T01:CDS
GCAATACTACTTACCCTGAA+TGG 0.502969 5:-76594004 None:intergenic
ATTGTTGGTCGCGATCCCGC+TGG 0.504920 5:+76593884 MsG0580028209.01.T01:CDS
AAACCTATCAAATACAATGA+TGG 0.508307 5:+76591910 MsG0580028209.01.T01:CDS
AAGAAAGAATAGCTAGAACC+TGG 0.509563 5:+76591800 MsG0580028209.01.T01:CDS
TTAAGAAATCCGGTCCATAA+TGG 0.512744 5:+76592015 MsG0580028209.01.T01:CDS
GCAAAGGCACGGATAAATGC+AGG 0.515091 5:+76593848 MsG0580028209.01.T01:CDS
ACCTTTGTGAAACCTCCAAC+AGG 0.515528 5:-76592114 None:intergenic
GCTGGAAATTGGCTTATTGG+AGG 0.523653 5:+76591871 MsG0580028209.01.T01:CDS
ATGATGGTCTTGATAACTAC+AGG 0.527746 5:+76591926 MsG0580028209.01.T01:CDS
AGAAAGAATAGCTAGAACCT+GGG 0.539463 5:+76591801 MsG0580028209.01.T01:CDS
ATGTTAAGCTTCTCGAGACC+AGG 0.540824 5:-76593977 None:intergenic
TCCAGGATTGCCTTACGTTG+AGG 0.546081 5:+76591834 MsG0580028209.01.T01:CDS
GAGGAGGTCATTGTTCCAGC+TGG 0.547705 5:+76591853 MsG0580028209.01.T01:CDS
AAGGTGCTTAGCATGGCTCC+TGG 0.555425 5:+76593959 MsG0580028209.01.T01:CDS
GTTACTCCCCATTGAAATCA+GGG 0.556533 5:+76591247 MsG0580028209.01.T01:CDS
CCAATAAGCCAATTTCCAGC+TGG 0.563923 5:-76591868 None:intergenic
GACCGGATTTCTTAACTGAA+AGG 0.569641 5:-76592007 None:intergenic
TGCTCCATCCTGACATCTAA+CGG 0.570183 5:-76592147 None:intergenic
ACGAGTATCGTTCATTAACA+AGG 0.579648 5:-76592043 None:intergenic
CTTGGCCCTGCATAATGCAT+AGG 0.581891 5:-76593809 None:intergenic
TCACTGATTCATGGTGAGAG+TGG 0.583529 5:+76591174 MsG0580028209.01.T01:CDS
GTTGGATGACCCATACCAGC+GGG 0.598608 5:-76593899 None:intergenic
TCGTCAACGTCTATTAGACA+TGG 0.599665 5:+76592062 MsG0580028209.01.T01:CDS
TACAATGGCATGCAAAGGCA+CGG 0.599759 5:+76593837 MsG0580028209.01.T01:CDS
CGATGGAAATATAGAAACAA+TGG 0.600676 5:-76593786 None:intergenic
ACAATGACCTCCTCAACGTA+AGG 0.605536 5:-76591844 None:intergenic
AAGGCATGACCATTATGGAC+CGG 0.612091 5:-76592024 None:intergenic
ATATCAACTTCATCCGAGAG+TGG 0.612216 5:+76591129 MsG0580028209.01.T01:CDS
CCTGCATAATGCATAGGCGA+TGG 0.613223 5:-76593803 None:intergenic
CAGGATGGAGCAACATAGCA+AGG 0.622612 5:+76592158 MsG0580028209.01.T01:CDS
AGGATTGCCTTACGTTGAGG+AGG 0.626411 5:+76591837 MsG0580028209.01.T01:CDS
TGAAGTACAATGGCATGCAA+AGG 0.627938 5:+76593832 MsG0580028209.01.T01:CDS
CATCGCCTATGCATTATGCA+GGG 0.632349 5:+76593804 MsG0580028209.01.T01:CDS
GAAAGAATAGCTAGAACCTG+GGG 0.638025 5:+76591802 MsG0580028209.01.T01:CDS
AACTTCGTGAAGAATTCGAT+AGG 0.647589 5:+76591962 MsG0580028209.01.T01:CDS
GCGACCAACAATATAGAAGT+CGG 0.651022 5:-76593873 None:intergenic
CAGGGCCAAGTGAAGTACAA+TGG 0.651820 5:+76593822 MsG0580028209.01.T01:CDS
TCCTGTTGGAGGTTTCACAA+AGG 0.658037 5:+76592113 MsG0580028209.01.T01:CDS
CGTCAACGTCTATTAGACAT+GGG 0.666925 5:+76592063 MsG0580028209.01.T01:CDS
TGTTCCGTTAGATGTCAGGA+TGG 0.672939 5:+76592143 MsG0580028209.01.T01:CDS
AGTTGGATGACCCATACCAG+CGG 0.716912 5:-76593900 None:intergenic
GTCCCACCCTGATTTCAATG+GGG 0.736716 5:-76591253 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAACATTGATTATTAT+AGG - Chr5:76592426-76592445 None:intergenic 10.0%
!! ATAAAAGAATTACAAATGAA+CGG - Chr5:76592488-76592507 None:intergenic 15.0%
!! GAAAAATTAATGAATAACAT+AGG - Chr5:76593657-76593676 None:intergenic 15.0%
!! AATGTTTAAAAAATTGACCT+TGG + Chr5:76592435-76592454 MsG0580028209.01.T01:intron 20.0%
!! ATGTTAAAAAATGAACAAGA+TGG - Chr5:76591643-76591662 None:intergenic 20.0%
!! TAATGAAGAATCTGAATATT+GGG + Chr5:76593579-76593598 MsG0580028209.01.T01:intron 20.0%
!!! AAATTCTTTTTCTTGTTCAT+AGG + Chr5:76592676-76592695 MsG0580028209.01.T01:intron 20.0%
!!! AATTTTTCTTGTTTGTTGTA+CGG + Chr5:76593669-76593688 MsG0580028209.01.T01:intron 20.0%
!!! GAATCAATTTTGTTTAATAC+TGG + Chr5:76592219-76592238 MsG0580028209.01.T01:intron 20.0%
!!! GGTTAATTTTTTTAAAGCAT+TGG + Chr5:76593690-76593709 MsG0580028209.01.T01:intron 20.0%
! AAAATTGTTACTCTGTTGAA+GGG + Chr5:76592964-76592983 MsG0580028209.01.T01:intron 25.0%
! AAACCTATCAAATACAATGA+TGG + Chr5:76591910-76591929 MsG0580028209.01.T01:CDS 25.0%
! AAAGAAATTGAACTATGACT+CGG - Chr5:76591532-76591551 None:intergenic 25.0%
! AACAAACAAGAAAGATCTAT+AGG - Chr5:76592613-76592632 None:intergenic 25.0%
! ACAGATATGTAACATTCATA+AGG - Chr5:76593176-76593195 None:intergenic 25.0%
! CATATACGATTGAAAATTGT+AGG - Chr5:76591417-76591436 None:intergenic 25.0%
! CTAATGAAGAATCTGAATAT+TGG + Chr5:76593578-76593597 MsG0580028209.01.T01:intron 25.0%
! GCTATATGAGAAAAAAATGA+TGG - Chr5:76592190-76592209 None:intergenic 25.0%
! TAGATAGAGAAAATACTACT+CGG - Chr5:76593118-76593137 None:intergenic 25.0%
! TTATGCAATTGGAAGAATAA+TGG + Chr5:76593529-76593548 MsG0580028209.01.T01:intron 25.0%
! TTCTTTAAACTACTCAAACT+GGG + Chr5:76591546-76591565 MsG0580028209.01.T01:intron 25.0%
! TTTCTTTAAACTACTCAAAC+TGG + Chr5:76591545-76591564 MsG0580028209.01.T01:intron 25.0%
!! TTTTTGAATTACAATGGCTA+TGG + Chr5:76591669-76591688 MsG0580028209.01.T01:intron 25.0%
!!! ATTGTTTTGTTTACTTGTGA+TGG + Chr5:76593147-76593166 MsG0580028209.01.T01:intron 25.0%
!!! CGGTTAATTTTTTAAAGCAT+TGG + Chr5:76592636-76592655 MsG0580028209.01.T01:intron 25.0%
!!! TTGTTCATTTTTTAACATGC+TGG + Chr5:76591645-76591664 MsG0580028209.01.T01:intron 25.0%
AACTTCCTGGAAAATATTGA+AGG - Chr5:76593239-76593258 None:intergenic 30.0%
AAGGATCAAAACTCAAATCT+AGG - Chr5:76592844-76592863 None:intergenic 30.0%
AATAATAAGTAGACAGCTCT+TGG - Chr5:76592540-76592559 None:intergenic 30.0%
AATTCTTCACGAAGTTGTTT+GGG - Chr5:76591958-76591977 None:intergenic 30.0%
ACAGGATGAAGCAATAAAAT+TGG - Chr5:76592099-76592118 None:intergenic 30.0%
AGACCATCATTGTATTTGAT+AGG - Chr5:76591916-76591935 None:intergenic 30.0%
ATACAAACAAAATCACGTGA+AGG - Chr5:76592863-76592882 None:intergenic 30.0%
ATCTCAGTTCATGGTTTAAT+TGG + Chr5:76591612-76591631 MsG0580028209.01.T01:intron 30.0%
ATTTAAGTAAACTCCTGTCA+TGG + Chr5:76591694-76591713 MsG0580028209.01.T01:intron 30.0%
CGATGGAAATATAGAAACAA+TGG - Chr5:76593789-76593808 None:intergenic 30.0%
CTAGGATAAATGTGCAAATA+TGG - Chr5:76592826-76592845 None:intergenic 30.0%
CTATGAGTTAGACAAAATCA+CGG - Chr5:76591280-76591299 None:intergenic 30.0%
CTGCAAAGAAGTGAAATTAA+TGG - Chr5:76591754-76591773 None:intergenic 30.0%
GAAAATTGTTACTCTGTTGA+AGG + Chr5:76592963-76592982 MsG0580028209.01.T01:intron 30.0%
GAAGTGAAATTAATGGTCAT+TGG - Chr5:76591747-76591766 None:intergenic 30.0%
TAAAAAATTGACCTTGGAAG+TGG + Chr5:76592441-76592460 MsG0580028209.01.T01:intron 30.0%
TTACATATCTGTGCATGTAT+TGG + Chr5:76593184-76593203 MsG0580028209.01.T01:intron 30.0%
TTATTCGAGAAGTTAGATTG+CGG + Chr5:76592555-76592574 MsG0580028209.01.T01:intron 30.0%
! AAAGCATTCCTTCAAAGAAA+AGG + Chr5:76593437-76593456 MsG0580028209.01.T01:intron 30.0%
! ATTTTACACAACCAACCATA+TGG - Chr5:76593605-76593624 None:intergenic 30.0%
! ATTTTATTGCTTCATCCTGT+TGG + Chr5:76592099-76592118 MsG0580028209.01.T01:CDS 30.0%
! GCTGGATTTTTGAATTACAA+TGG + Chr5:76591663-76591682 MsG0580028209.01.T01:intron 30.0%
! TTCAATATTTTCCAGGAAGT+TGG + Chr5:76593238-76593257 MsG0580028209.01.T01:intron 30.0%
!! ACGTGATTTTGTTTGTATAG+TGG + Chr5:76592865-76592884 MsG0580028209.01.T01:intron 30.0%
!! GATCTTTCTTGTTTGTTGTA+CGG + Chr5:76592616-76592635 MsG0580028209.01.T01:intron 30.0%
!! TGATTTTGTTTGTATAGTGG+AGG + Chr5:76592868-76592887 MsG0580028209.01.T01:intron 30.0%
!!! ACATGAAAGTAGTTTTGAGA+TGG + Chr5:76593287-76593306 MsG0580028209.01.T01:intron 30.0%
!!! CAATGTTTTAGAAATCGAAC+CGG + Chr5:76591486-76591505 MsG0580028209.01.T01:intron 30.0%
AACAGTTTCACTATACCACT+TGG + Chr5:76593362-76593381 MsG0580028209.01.T01:intron 35.0%
AACTTCGTGAAGAATTCGAT+AGG + Chr5:76591962-76591981 MsG0580028209.01.T01:CDS 35.0%
AAGAAAGAATAGCTAGAACC+TGG + Chr5:76591800-76591819 MsG0580028209.01.T01:CDS 35.0%
AATCTGAATATTGGGCCATA+TGG + Chr5:76593587-76593606 MsG0580028209.01.T01:intron 35.0%
AGAAAGAATAGCTAGAACCT+GGG + Chr5:76591801-76591820 MsG0580028209.01.T01:CDS 35.0%
ATAGAAACAATGGTTGTCTC+TGG - Chr5:76593779-76593798 None:intergenic 35.0%
CAAGAAAGATCTATAGGTCA+TGG - Chr5:76592607-76592626 None:intergenic 35.0%
GAATTCTTCACGAAGTTGTT+TGG - Chr5:76591959-76591978 None:intergenic 35.0%
TAATCCACTCAAGGATTTCA+AGG + Chr5:76592753-76592772 MsG0580028209.01.T01:intron 35.0%
TATTCCTTGAAATCCTTGAG+TGG - Chr5:76592760-76592779 None:intergenic 35.0%
TCTTCAACTCAGTGTATGTT+TGG - Chr5:76591308-76591327 None:intergenic 35.0%
TGGATAAACTGCTTTATACC+AGG - Chr5:76592587-76592606 None:intergenic 35.0%
TTAACAAGGCATGACCATTA+TGG - Chr5:76592032-76592051 None:intergenic 35.0%
TTAAGAAATCCGGTCCATAA+TGG + Chr5:76592015-76592034 MsG0580028209.01.T01:CDS 35.0%
TTATTTGGGAGGTTCAACTA+CGG - Chr5:76591578-76591597 None:intergenic 35.0%
TTCCAATTGCATAAAACAGC+TGG - Chr5:76593523-76593542 None:intergenic 35.0%
TTTCAAGAACTCCATCTTCT+AGG - Chr5:76592703-76592722 None:intergenic 35.0%
! ACGAGTATCGTTCATTAACA+AGG - Chr5:76592046-76592065 None:intergenic 35.0%
! AGCTTAACATTTTGCCATTC+AGG + Chr5:76593990-76594009 MsG0580028209.01.T01:CDS 35.0%
! ATGATGGTCTTGATAACTAC+AGG + Chr5:76591926-76591945 MsG0580028209.01.T01:CDS 35.0%
! CATGACCTTCAATATTTTCC+AGG + Chr5:76593231-76593250 MsG0580028209.01.T01:intron 35.0%
! GCTTAACATTTTGCCATTCA+GGG + Chr5:76593991-76594010 MsG0580028209.01.T01:CDS 35.0%
! TTGTCAAATAGCAGCTTTAG+CGG + Chr5:76592308-76592327 MsG0580028209.01.T01:intron 35.0%
!! GAAACTTCATCACTGATTCA+TGG + Chr5:76591165-76591184 MsG0580028209.01.T01:CDS 35.0%
!! TTTTGTTTGTATAGTGGAGG+TGG + Chr5:76592871-76592890 MsG0580028209.01.T01:intron 35.0%
AAACTCAAAGACACCATGAC+AGG - Chr5:76591710-76591729 None:intergenic 40.0%
AACCTCCCAAATAACTGAAC+CGG + Chr5:76591584-76591603 MsG0580028209.01.T01:intron 40.0%
ACTGTTTATGAGCTCCAACA+TGG - Chr5:76593348-76593367 None:intergenic 40.0%
ATATCAACTTCATCCGAGAG+TGG + Chr5:76591129-76591148 MsG0580028209.01.T01:CDS 40.0%
CGCCTTTCAGTTAAGAAATC+CGG + Chr5:76592005-76592024 MsG0580028209.01.T01:CDS 40.0%
CGTCAACGTCTATTAGACAT+GGG + Chr5:76592063-76592082 MsG0580028209.01.T01:CDS 40.0%
CTTGAGTAGTAATCCACTCA+AGG + Chr5:76592744-76592763 MsG0580028209.01.T01:intron 40.0%
GAAAGAATAGCTAGAACCTG+GGG + Chr5:76591802-76591821 MsG0580028209.01.T01:CDS 40.0%
GACCGGATTTCTTAACTGAA+AGG - Chr5:76592010-76592029 None:intergenic 40.0%
GATCAAGAACTCCATCTTCT+AGG - Chr5:76593757-76593776 None:intergenic 40.0%
GATCTTTCAATCCAACTTCC+TGG - Chr5:76593252-76593271 None:intergenic 40.0%
GCAATACTACTTACCCTGAA+TGG - Chr5:76594007-76594026 None:intergenic 40.0%
GCGACCAACAATATAGAAGT+CGG - Chr5:76593876-76593895 None:intergenic 40.0%
GTTACTCCCCATTGAAATCA+GGG + Chr5:76591247-76591266 MsG0580028209.01.T01:CDS 40.0%
TCATTGTTCCAGCTGGAAAT+TGG + Chr5:76591860-76591879 MsG0580028209.01.T01:CDS 40.0%
TCGTCAACGTCTATTAGACA+TGG + Chr5:76592062-76592081 MsG0580028209.01.T01:CDS 40.0%
TGAAGTACAATGGCATGCAA+AGG + Chr5:76593832-76593851 MsG0580028209.01.T01:CDS 40.0%
TGAATATTGGGCCATATGGT+TGG + Chr5:76593591-76593610 MsG0580028209.01.T01:intron 40.0%
TGACCCTGATCATGGAAAAA+AGG + Chr5:76593940-76593959 MsG0580028209.01.T01:CDS 40.0%
TGTCTCCGGTTCAGTTATTT+GGG - Chr5:76591592-76591611 None:intergenic 40.0%
TGTTACTCCCCATTGAAATC+AGG + Chr5:76591246-76591265 MsG0580028209.01.T01:CDS 40.0%
TGTTCATAGGTCCTAGAAGA+TGG + Chr5:76592689-76592708 MsG0580028209.01.T01:intron 40.0%
TGTTGTCGTTGTAGTTTGAG+TGG - Chr5:76593404-76593423 None:intergenic 40.0%
TTAACCAGTGTTGTCAATCG+TGG - Chr5:76592388-76592407 None:intergenic 40.0%
TTATTGCTTCATCCTGTTGG+AGG + Chr5:76592102-76592121 MsG0580028209.01.T01:CDS 40.0%
TTCAACATGTCGAAACTCAC+TGG - Chr5:76592511-76592530 None:intergenic 40.0%
TTGAATTGCAACCACTTCCA+AGG - Chr5:76592455-76592474 None:intergenic 40.0%
TTGGCTTATTGGAGGAGATT+TGG + Chr5:76591879-76591898 MsG0580028209.01.T01:CDS 40.0%
TTGTCTCCGGTTCAGTTATT+TGG - Chr5:76591593-76591612 None:intergenic 40.0%
! GAAATTGAACTATGACTCGG+AGG - Chr5:76591529-76591548 None:intergenic 40.0%
!! ATACTGGTGCTATAGAGTAG+CGG + Chr5:76592235-76592254 MsG0580028209.01.T01:intron 40.0%
!! TGCCAGCTGTTTTATGCAAT+TGG + Chr5:76593518-76593537 MsG0580028209.01.T01:intron 40.0%
!! TGGAAAAAAGGTGCTTAGCA+TGG + Chr5:76593952-76593971 MsG0580028209.01.T01:CDS 40.0%
!!! AGCACCTTTTTTCCATGATC+AGG - Chr5:76593947-76593966 None:intergenic 40.0%
!!! GCACCTTTTTTCCATGATCA+GGG - Chr5:76593946-76593965 None:intergenic 40.0%
AACACTCAGTTGTCCACTCT+CGG - Chr5:76591145-76591164 None:intergenic 45.0%
AAGGCATGACCATTATGGAC+CGG - Chr5:76592027-76592046 None:intergenic 45.0%
ACAATGACCTCCTCAACGTA+AGG - Chr5:76591847-76591866 None:intergenic 45.0%
ACCACTTGGTTTACCAAACC+AGG + Chr5:76593376-76593395 MsG0580028209.01.T01:intron 45.0%
ACCTTTGTGAAACCTCCAAC+AGG - Chr5:76592117-76592136 None:intergenic 45.0%
ACGATGTTCCGTTAGATGTC+AGG + Chr5:76592139-76592158 MsG0580028209.01.T01:CDS 45.0%
AGTTTGAGTGGTACCTGGTT+TGG - Chr5:76593392-76593411 None:intergenic 45.0%
ATGTTAAGCTTCTCGAGACC+AGG - Chr5:76593980-76593999 None:intergenic 45.0%
CAATCCACGATTGACAACAC+TGG + Chr5:76592381-76592400 MsG0580028209.01.T01:intron 45.0%
CATCGCCTATGCATTATGCA+GGG + Chr5:76593804-76593823 MsG0580028209.01.T01:CDS 45.0%
CCAATAAGCCAATTTCCAGC+TGG - Chr5:76591871-76591890 None:intergenic 45.0%
CCATGAACTGAGATTGTCTC+CGG - Chr5:76591606-76591625 None:intergenic 45.0%
GACTTGTATGACCCTGATCA+TGG + Chr5:76593932-76593951 MsG0580028209.01.T01:CDS 45.0%
GCATGCCATTGTACTTCACT+TGG - Chr5:76593830-76593849 None:intergenic 45.0%
GTTAGATTGCGGTTTCAACC+TGG + Chr5:76592566-76592585 MsG0580028209.01.T01:intron 45.0%
GTTGTAGTTTGAGTGGTACC+TGG - Chr5:76593397-76593416 None:intergenic 45.0%
TACAAGTCCCGTTTCTCAGT+TGG - Chr5:76593920-76593939 None:intergenic 45.0%
TACAATGGCATGCAAAGGCA+CGG + Chr5:76593837-76593856 MsG0580028209.01.T01:CDS 45.0%
TCCTGTTGGAGGTTTCACAA+AGG + Chr5:76592113-76592132 MsG0580028209.01.T01:CDS 45.0%
TCCTTCTGAGTCTTGGCTTA+TGG - Chr5:76593496-76593515 None:intergenic 45.0%
TGCTCCATCCTGACATCTAA+CGG - Chr5:76592150-76592169 None:intergenic 45.0%
TGGGTCATCCAACTGAGAAA+CGG + Chr5:76593909-76593928 MsG0580028209.01.T01:CDS 45.0%
TGTCCCACCCTGATTTCAAT+GGG - Chr5:76591257-76591276 None:intergenic 45.0%
TGTTCCGTTAGATGTCAGGA+TGG + Chr5:76592143-76592162 MsG0580028209.01.T01:CDS 45.0%
! CCAGCTGGAAATTGGCTTAT+TGG + Chr5:76591868-76591887 MsG0580028209.01.T01:CDS 45.0%
! GCTGGAAATTGGCTTATTGG+AGG + Chr5:76591871-76591890 MsG0580028209.01.T01:CDS 45.0%
! GGTCTTGTCAGTTTGATGTC+CGG - Chr5:76591508-76591527 None:intergenic 45.0%
! GTTTGTATAGTGGAGGTGGA+GGG + Chr5:76592875-76592894 MsG0580028209.01.T01:intron 45.0%
! TGTTTGTATAGTGGAGGTGG+AGG + Chr5:76592874-76592893 MsG0580028209.01.T01:intron 45.0%
!! ACCTGGTTTGGTAAACCAAG+TGG - Chr5:76593380-76593399 None:intergenic 45.0%
!! CGTCTTGTTTGCAACCATGT+TGG + Chr5:76593331-76593350 MsG0580028209.01.T01:intron 45.0%
!! GAGGGAAAGTGACTTGTTCA+AGG + Chr5:76592893-76592912 MsG0580028209.01.T01:intron 45.0%
!! TCACTGATTCATGGTGAGAG+TGG + Chr5:76591174-76591193 MsG0580028209.01.T01:CDS 45.0%
!!! CGTGCTAGCCTTTTCTTTGA+AGG - Chr5:76593448-76593467 None:intergenic 45.0%
ACTCCCCATTGAAATCAGGG+TGG + Chr5:76591250-76591269 MsG0580028209.01.T01:intron 50.0%
AGGATTGCCTTACGTTGAGG+AGG + Chr5:76591837-76591856 MsG0580028209.01.T01:CDS 50.0%
AGTTGGATGACCCATACCAG+CGG - Chr5:76593903-76593922 None:intergenic 50.0%
CAGGATGGAGCAACATAGCA+AGG + Chr5:76592158-76592177 MsG0580028209.01.T01:CDS 50.0%
CAGGGCCAAGTGAAGTACAA+TGG + Chr5:76593822-76593841 MsG0580028209.01.T01:CDS 50.0%
CCATCGCCTATGCATTATGC+AGG + Chr5:76593803-76593822 MsG0580028209.01.T01:CDS 50.0%
CCGGAGACAATCTCAGTTCA+TGG + Chr5:76591603-76591622 MsG0580028209.01.T01:intron 50.0%
CCTGCATAATGCATAGGCGA+TGG - Chr5:76593806-76593825 None:intergenic 50.0%
CTCCCCATTGAAATCAGGGT+GGG + Chr5:76591251-76591270 MsG0580028209.01.T01:intron 50.0%
CTCCGGTTCAGTTATTTGGG+AGG - Chr5:76591589-76591608 None:intergenic 50.0%
CTTGGCCCTGCATAATGCAT+AGG - Chr5:76593812-76593831 None:intergenic 50.0%
GCCATAAGCCAAGACTCAGA+AGG + Chr5:76593492-76593511 MsG0580028209.01.T01:intron 50.0%
GGAACAGAAGCAACGCAATC+AGG - Chr5:76593636-76593655 None:intergenic 50.0%
GGGTCATCCAACTGAGAAAC+GGG + Chr5:76593910-76593929 MsG0580028209.01.T01:CDS 50.0%
GTCCCACCCTGATTTCAATG+GGG - Chr5:76591256-76591275 None:intergenic 50.0%
GTGTCCCACCCTGATTTCAA+TGG - Chr5:76591258-76591277 None:intergenic 50.0%
TCCAGGATTGCCTTACGTTG+AGG + Chr5:76591834-76591853 MsG0580028209.01.T01:CDS 50.0%
TCCTCAACGTAAGGCAATCC+TGG - Chr5:76591838-76591857 None:intergenic 50.0%
TGGCACATCCTTCTGAGTCT+TGG - Chr5:76593503-76593522 None:intergenic 50.0%
! GCAAAGGCACGGATAAATGC+AGG + Chr5:76593848-76593867 MsG0580028209.01.T01:CDS 50.0%
!! GGCGCCGACTTCTATATTGT+TGG + Chr5:76593869-76593888 MsG0580028209.01.T01:CDS 50.0%
GAGGAGGTCATTGTTCCAGC+TGG + Chr5:76591853-76591872 MsG0580028209.01.T01:CDS 55.0%
GTTGGATGACCCATACCAGC+GGG - Chr5:76593902-76593921 None:intergenic 55.0%
! AAGGTGCTTAGCATGGCTCC+TGG + Chr5:76593959-76593978 MsG0580028209.01.T01:CDS 55.0%
ACCTGGGGAACAACTGCTCC+AGG + Chr5:76591817-76591836 MsG0580028209.01.T01:CDS 60.0%
ATTGTTGGTCGCGATCCCGC+TGG + Chr5:76593884-76593903 MsG0580028209.01.T01:CDS 60.0%
TCCTGGAGCAGTTGTTCCCC+AGG - Chr5:76591821-76591840 None:intergenic 60.0%
GGTCGCGATCCCGCTGGTAT+GGG + Chr5:76593890-76593909 MsG0580028209.01.T01:CDS 65.0%
TGGTCGCGATCCCGCTGGTA+TGG + Chr5:76593889-76593908 MsG0580028209.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 76591102 76594045 76591102 ID=MsG0580028209.01;Name=MsG0580028209.01
Chr5 mRNA 76591102 76594045 76591102 ID=MsG0580028209.01.T01;Parent=MsG0580028209.01;Name=MsG0580028209.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|0.66|1|1|3|0|288
Chr5 exon 76591102 76591268 76591102 ID=MsG0580028209.01.T01:exon:46098;Parent=MsG0580028209.01.T01
Chr5 exon 76591774 76592179 76591774 ID=MsG0580028209.01.T01:exon:46099;Parent=MsG0580028209.01.T01
Chr5 exon 76593752 76594045 76593752 ID=MsG0580028209.01.T01:exon:46100;Parent=MsG0580028209.01.T01
Chr5 CDS 76591102 76591268 76591102 ID=MsG0580028209.01.T01:cds;Parent=MsG0580028209.01.T01
Chr5 CDS 76591774 76592179 76591774 ID=MsG0580028209.01.T01:cds;Parent=MsG0580028209.01.T01
Chr5 CDS 76593752 76594045 76593752 ID=MsG0580028209.01.T01:cds;Parent=MsG0580028209.01.T01
Gene Sequence

>MsG0580028209.01.T01

TGTTTGTTGCTGTTTTCAATGGATTTGATATCAACTTCATCCGAGAGTGGACAACTGAGTGTTGAAACTTCATCACTGATTCATGGTGAGAGTGGACAATTGAGTGTTGAAAGTTCTTCAATGATTCATGCTGACAGTTCTCAATGTTACTCCCCATTGAAATCAGGCATTGAAATCTACAAGCATAACAAAGAAGAAAGAATAGCTAGAACCTGGGGAACAACTGCTCCAGGATTGCCTTACGTTGAGGAGGTCATTGTTCCAGCTGGAAATTGGCTTATTGGAGGAGATTTGGAAGTGCTAAAACCTATCAAATACAATGATGGTCTTGATAACTACAGGCTCTCTCCCAAACAACTTCGTGAAGAATTCGATAGGCGTAAAGCTGATGCAGTTTTCGCCTTTCAGTTAAGAAATCCGGTCCATAATGGTCATGCCTTGTTAATGAACGATACTCGTCAACGTCTATTAGACATGGGTTACAAAAATCCAATTTTATTGCTTCATCCTGTTGGAGGTTTCACAAAGGTTGACGATGTTCCGTTAGATGTCAGGATGGAGCAACATAGCAAGGTCCTAGAAGATGGAGTTCTTGATCCAGAGACAACCATTGTTTCTATATTTCCATCGCCTATGCATTATGCAGGGCCAAGTGAAGTACAATGGCATGCAAAGGCACGGATAAATGCAGGCGCCGACTTCTATATTGTTGGTCGCGATCCCGCTGGTATGGGTCATCCAACTGAGAAACGGGACTTGTATGACCCTGATCATGGAAAAAAGGTGCTTAGCATGGCTCCTGGTCTCGAGAAGCTTAACATTTTGCCATTCAGGGTAAGTAGTATTGCTTTTGCACATGAAGCTTAA

Protein sequence

>MsG0580028209.01.T01

CLLLFSMDLISTSSESGQLSVETSSLIHGESGQLSVESSSMIHADSSQCYSPLKSGIEIYKHNKEERIARTWGTTAPGLPYVEEVIVPAGNWLIGGDLEVLKPIKYNDGLDNYRLSPKQLREEFDRRKADAVFAFQLRNPVHNGHALLMNDTRQRLLDMGYKNPILLLHPVGGFTKVDDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPSEVQWHAKARINAGADFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFRVSSIAFAHEA*