AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006848.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006848.01.T01 MTR_2g015430 96.610 59 2 0 110 168 360 418 2.73e-34 126
MsG0280006848.01.T01 MTR_2g015430 87.500 56 7 0 1 56 138 193 5.20e-28 109
MsG0280006848.01.T01 MTR_4g055170 50.000 64 32 0 1 64 148 211 2.94e-16 76.3
MsG0280006848.01.T01 MTR_3g465930 57.407 54 23 0 1 54 151 204 2.12e-15 73.9
MsG0280006848.01.T01 MTR_3g465910 56.364 55 24 0 1 55 150 204 2.54e-15 73.6
MsG0280006848.01.T01 MTR_3g465950 56.364 55 24 0 1 55 151 205 2.93e-15 73.6
MsG0280006848.01.T01 MTR_3g465990 26.961 204 136 4 1 192 148 350 3.36e-15 73.2
MsG0280006848.01.T01 MTR_6g053810 51.852 54 26 0 1 54 154 207 1.22e-14 71.6
MsG0280006848.01.T01 MTR_3g465980 51.786 56 27 0 1 56 148 203 2.96e-14 70.5
MsG0280006848.01.T01 MTR_3g465870 52.727 55 26 0 1 55 153 207 1.37e-13 68.6
MsG0280006848.01.T01 MTR_7g110610 52.830 53 25 0 2 54 135 187 1.79e-13 68.2
MsG0280006848.01.T01 MTR_3g465880 48.214 56 29 0 1 56 151 206 1.93e-11 62.4
MsG0280006848.01.T01 MTR_7g114490 44.444 63 35 0 1 63 145 207 6.42e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006848.01.T01 AT1G28680 37.102 283 63 7 1 168 142 424 1.54e-48 164
MsG0280006848.01.T01 AT1G28680 36.076 158 40 3 1 97 142 299 2.98e-23 95.5
MsG0280006848.01.T01 AT5G07080 52.727 55 26 0 2 56 151 205 8.88e-15 72.0
MsG0280006848.01.T01 AT2G25150 54.545 55 25 0 2 56 150 204 1.73e-13 68.6
MsG0280006848.01.T01 AT2G23510 52.727 55 26 0 2 56 151 205 1.45e-12 65.9
MsG0280006848.01.T01 AT3G62160 40.000 65 39 0 2 66 136 200 4.63e-11 61.2
MsG0280006848.01.T01 AT3G47170 50.000 52 26 0 2 53 155 206 5.03e-11 61.2

Find 57 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCATTCTACTGTGGATTT+TGG 0.150082 2:-7036899 MsG0280006848.01.T01:CDS
CCATCACTTCTGCTGGATAT+TGG 0.251751 2:-7037132 MsG0280006848.01.T01:CDS
TGTCTCGGAGGATCAAATTT+AGG 0.260444 2:+7036042 None:intergenic
TTTGATCCTCCGAGACAAAT+TGG 0.263351 2:-7036036 MsG0280006848.01.T01:CDS
CATCACTTCTGCTGGATATT+GGG 0.272956 2:-7037131 MsG0280006848.01.T01:CDS
TTAGGAGCGATCCAAGCTTT+TGG 0.306867 2:+7036060 None:intergenic
TCAGCACTAGCCGTTGAATA+AGG 0.318065 2:+7036803 None:intergenic
CCAAGTGGCAAAACAGTAAC+TGG 0.351192 2:+7036866 None:intergenic
ATGGGATCACAGCAGGGAAA+TGG 0.379534 2:-7036952 MsG0280006848.01.T01:intron
GGATGTGCCACGAGTGGATT+CGG 0.409644 2:-7037648 MsG0280006848.01.T01:CDS
GCCACGAGTGGATTCGGCTT+TGG 0.411240 2:-7037642 MsG0280006848.01.T01:intron
TCTGCTGGATATTGGGGAAA+TGG 0.421980 2:-7037124 MsG0280006848.01.T01:CDS
CACTTGGTAGAAACTTGCTT+GGG 0.426890 2:-7036850 MsG0280006848.01.T01:CDS
GGGTGAGTGGTTTCACTGAT+TGG 0.429689 2:-7036931 MsG0280006848.01.T01:CDS
CCATTCACTTTGTGATGGAA+TGG 0.439377 2:-7037770 MsG0280006848.01.T01:CDS
AGAGAGAAGTTGTGGGTCCA+AGG 0.456050 2:-7037670 MsG0280006848.01.T01:CDS
AAGTGCGGTGGGTTCACTCT+CGG 0.458452 2:-7037805 MsG0280006848.01.T01:CDS
TCCACTCGTGGCACATCCCT+TGG 0.464181 2:+7037653 None:intergenic
CTCCGAGACAAATTGGAACC+TGG 0.465104 2:-7036029 MsG0280006848.01.T01:CDS
TTTCACTGATTGGAGACACT+TGG 0.470257 2:-7036921 MsG0280006848.01.T01:CDS
TCCCAGGTTCCAATTTGTCT+CGG 0.470470 2:+7036027 None:intergenic
TTTCAACGCGATGGCTGAGT+TGG 0.472759 2:-7037734 MsG0280006848.01.T01:CDS
AGTAAAGCCATCACTTCTGC+TGG 0.482982 2:-7037139 MsG0280006848.01.T01:CDS
GGAACCTGGGAAGACATTGC+AGG 0.484989 2:-7036015 MsG0280006848.01.T01:CDS
TGGGATCACAGCAGGGAAAT+GGG 0.489521 2:-7036951 MsG0280006848.01.T01:intron
CCACTTGGTAGAAACTTGCT+TGG 0.502609 2:-7036851 MsG0280006848.01.T01:CDS
GCTCCCTGCAATGTCTTCCC+AGG 0.511520 2:+7036011 None:intergenic
GAACCCACCGCACTTGAAAA+CGG 0.517725 2:+7037813 None:intergenic
GGCTGAGTTGGCTCGTGGCA+AGG 0.522476 2:-7037722 MsG0280006848.01.T01:CDS
TGTGGGAGAGAGAGAAGTTG+TGG 0.524203 2:-7037678 MsG0280006848.01.T01:CDS
ATTCACCATTCACTTTGTGA+TGG 0.524293 2:-7037775 MsG0280006848.01.T01:CDS
ATCACTTCTGCTGGATATTG+GGG 0.528613 2:-7037130 MsG0280006848.01.T01:CDS
CCATTCCATCACAAAGTGAA+TGG 0.529607 2:+7037770 None:intergenic
TTCACTGATTGGAGACACTT+GGG 0.534221 2:-7036920 MsG0280006848.01.T01:CDS
CATTCACTTTGTGATGGAAT+GGG 0.536489 2:-7037769 MsG0280006848.01.T01:CDS
CAGGGTAAAGGCCTCAAAAG+TGG 0.540199 2:-7037211 MsG0280006848.01.T01:CDS
GAGAGAAGTTGTGGGTCCAA+GGG 0.541818 2:-7037669 MsG0280006848.01.T01:CDS
TCCGAGACAAATTGGAACCT+GGG 0.560010 2:-7036028 MsG0280006848.01.T01:CDS
CCAATATCCAGCAGAAGTGA+TGG 0.561306 2:+7037132 None:intergenic
AACTTCTCTCTCTCCCACAC+TGG 0.564214 2:+7037682 None:intergenic
CAGGTTCCAATTTGTCTCGG+AGG 0.575814 2:+7036030 None:intergenic
GTGGGAGAGAGAGAAGTTGT+GGG 0.591878 2:-7037677 MsG0280006848.01.T01:CDS
TCCAAGGGATGTGCCACGAG+TGG 0.592833 2:-7037654 MsG0280006848.01.T01:CDS
GAACCTGGGAAGACATTGCA+GGG 0.597324 2:-7036014 MsG0280006848.01.T01:CDS
TAATTGCTACTACAGGGTAA+AGG 0.598627 2:-7037223 MsG0280006848.01.T01:intron
TCACTTTGTGATGGAATGGG+TGG 0.602513 2:-7037766 MsG0280006848.01.T01:CDS
AAAAGTGGAGGATAATGAGA+AGG 0.618094 2:-7037196 MsG0280006848.01.T01:CDS
TCGTGGCAAGGAACATATCA+CGG 0.627406 2:-7037710 MsG0280006848.01.T01:CDS
CCAAGCAAGTTTCTACCAAG+TGG 0.630656 2:+7036851 None:intergenic
CACTTTGTGATGGAATGGGT+GGG 0.632981 2:-7037765 MsG0280006848.01.T01:CDS
GCGATGGCTGAGTTGGCTCG+TGG 0.648947 2:-7037727 MsG0280006848.01.T01:CDS
ACAGCAGGGAAATGGGTGAG+TGG 0.650251 2:-7036944 MsG0280006848.01.T01:intron
GGTAAAGGCCTCAAAAGTGG+AGG 0.661293 2:-7037208 MsG0280006848.01.T01:CDS
ACACTTGGGTCATTCTACTG+TGG 0.668381 2:-7036906 MsG0280006848.01.T01:CDS
ACCAAAGCCGAATCCACTCG+TGG 0.669647 2:+7037641 None:intergenic
ATATCACGGTGAAGCCAGTG+TGG 0.684655 2:-7037696 MsG0280006848.01.T01:CDS
TATCACGGTGAAGCCAGTGT+GGG 0.691989 2:-7037695 MsG0280006848.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATCATGATT+AGG - Chr2:7037625-7037644 MsG0280006848.01.T01:intron 10.0%
!!! TGTTCGTAATATTTTTTTTA+TGG - Chr2:7037211-7037230 MsG0280006848.01.T01:CDS 15.0%
!! AATTTACATCTCATTACTTA+TGG - Chr2:7037398-7037417 MsG0280006848.01.T01:intron 20.0%
!! TAATATTCTTTATGTGATTG+AGG + Chr2:7037534-7037553 None:intergenic 20.0%
! AAAATCATTTCCTATAGCAA+TGG + Chr2:7037316-7037335 None:intergenic 25.0%
! ATAATCCAATAGAACTTACT+TGG + Chr2:7036397-7036416 None:intergenic 25.0%
! ATCTCATTACTTATGGTATT+AGG - Chr2:7037405-7037424 MsG0280006848.01.T01:intron 25.0%
! ATTCAACTGGTGATATATTA+GGG - Chr2:7036531-7036550 MsG0280006848.01.T01:intron 25.0%
! ATTTAAGTCATGAAATCAGA+AGG - Chr2:7037466-7037485 MsG0280006848.01.T01:intron 25.0%
! TAATACATTACCATTGCTAT+AGG - Chr2:7037303-7037322 MsG0280006848.01.T01:intron 25.0%
! TATTCAACTGGTGATATATT+AGG - Chr2:7036530-7036549 MsG0280006848.01.T01:intron 25.0%
! TCTCATTACTTATGGTATTA+GGG - Chr2:7037406-7037425 MsG0280006848.01.T01:intron 25.0%
!! AAATCTTTGTTTGATCAATG+TGG - Chr2:7036324-7036343 MsG0280006848.01.T01:intron 25.0%
!! AATCTTTGTTTGATCAATGT+GGG - Chr2:7036325-7036344 MsG0280006848.01.T01:intron 25.0%
!! TTCCATGATTTTTATTCAAC+TGG - Chr2:7036518-7036537 MsG0280006848.01.T01:intron 25.0%
!!! ATTATCACCACTTTTTATTG+TGG + Chr2:7037509-7037528 None:intergenic 25.0%
!!! TTACTTTTTGCCTTATTCAA+CGG - Chr2:7037021-7037040 MsG0280006848.01.T01:intron 25.0%
!!! TTATTATTGACTTGTGTCTT+AGG - Chr2:7036461-7036480 MsG0280006848.01.T01:intron 25.0%
AACATTTGCATTATGCTGAT+GGG - Chr2:7036864-7036883 MsG0280006848.01.T01:CDS 30.0%
AATCAGAAGGTTCAAACATT+TGG - Chr2:7037479-7037498 MsG0280006848.01.T01:intron 30.0%
CACCAGTTGAATAAAAATCA+TGG + Chr2:7036523-7036542 None:intergenic 30.0%
GAATAAGGCAAAAAGTAACA+AGG + Chr2:7037019-7037038 None:intergenic 30.0%
GATACTTAATAACAACCACT+CGG - Chr2:7037734-7037753 MsG0280006848.01.T01:CDS 30.0%
TACTTATGGTATTAGGGAAT+AGG - Chr2:7037412-7037431 MsG0280006848.01.T01:intron 30.0%
! AAAAGAATGGGTTTAAGGTT+TGG - Chr2:7037056-7037075 MsG0280006848.01.T01:intron 30.0%
! TGAGAAAAAGAATGGGTTTA+AGG - Chr2:7037051-7037070 MsG0280006848.01.T01:intron 30.0%
!!! AGAGTTTTTGAGTTTGGATA+AGG - Chr2:7036219-7036238 MsG0280006848.01.T01:intron 30.0%
!!! TTCACTACTTTTGAAGCTTT+AGG - Chr2:7036354-7036373 MsG0280006848.01.T01:intron 30.0%
AAAAGTGGAGGATAATGAGA+AGG - Chr2:7036638-7036657 MsG0280006848.01.T01:intron 35.0%
ATTCACCATTCACTTTGTGA+TGG - Chr2:7036059-7036078 MsG0280006848.01.T01:CDS 35.0%
ATTTGGTAGAACAACCCATT+TGG - Chr2:7036768-7036787 MsG0280006848.01.T01:intron 35.0%
CAACATTTGCATTATGCTGA+TGG - Chr2:7036863-7036882 MsG0280006848.01.T01:CDS 35.0%
CCTGACAATTAACCATTAGA+GGG - Chr2:7037702-7037721 MsG0280006848.01.T01:CDS 35.0%
GAAGATATGCAAATGTTTGC+TGG - Chr2:7037114-7037133 MsG0280006848.01.T01:CDS 35.0%
TAATTGCTACTACAGGGTAA+AGG - Chr2:7036611-7036630 MsG0280006848.01.T01:intron 35.0%
TGGAATGCCACAATAAAAAG+TGG - Chr2:7037499-7037518 MsG0280006848.01.T01:intron 35.0%
TTTGGTAGAACAACCCATTT+GGG - Chr2:7036769-7036788 MsG0280006848.01.T01:intron 35.0%
! CATTCACTTTGTGATGGAAT+GGG - Chr2:7036065-7036084 MsG0280006848.01.T01:CDS 35.0%
! CTAGTGCTGAGAAAAAGAAT+GGG - Chr2:7037044-7037063 MsG0280006848.01.T01:intron 35.0%
! GTCATTCTACTGTGGATTTT+GGG - Chr2:7036936-7036955 MsG0280006848.01.T01:CDS 35.0%
! TGAGTTTGGATAAGGAGTTT+TGG - Chr2:7036227-7036246 MsG0280006848.01.T01:intron 35.0%
! TGCATATCTTCTCTAAAAGC+AGG + Chr2:7037105-7037124 None:intergenic 35.0%
! TTTTGTAGGTTCCAAAAGCT+TGG - Chr2:7037763-7037782 MsG0280006848.01.T01:CDS 35.0%
!! AAGCTTTAGGTGCTTACATT+TGG - Chr2:7036367-7036386 MsG0280006848.01.T01:intron 35.0%
!!! GGTAAGAGAGTTTTTGAGTT+TGG - Chr2:7036213-7036232 MsG0280006848.01.T01:intron 35.0%
AATGGTTAATTGTCAGGCCA+GGG + Chr2:7037699-7037718 None:intergenic 40.0%
ACCATGGTAATTGCTACTAC+AGG - Chr2:7036604-7036623 MsG0280006848.01.T01:intron 40.0%
ATATCGTCAAATGCGAGACT+CGG + Chr2:7037157-7037176 None:intergenic 40.0%
ATCACTTCTGCTGGATATTG+GGG - Chr2:7036704-7036723 MsG0280006848.01.T01:intron 40.0%
ATCAGTGTATCACCCTCTAA+TGG + Chr2:7037717-7037736 None:intergenic 40.0%
CATCACTTCTGCTGGATATT+GGG - Chr2:7036703-7036722 MsG0280006848.01.T01:intron 40.0%
CATGATTTCTGCTCTAACCA+TGG - Chr2:7036588-7036607 MsG0280006848.01.T01:intron 40.0%
CCATGGTAATTGCTACTACA+GGG - Chr2:7036605-7036624 MsG0280006848.01.T01:intron 40.0%
CCATTCCATCACAAAGTGAA+TGG + Chr2:7036067-7036086 None:intergenic 40.0%
CCCTCTAATGGTTAATTGTC+AGG + Chr2:7037705-7037724 None:intergenic 40.0%
CTTTAGGTGCTTACATTTGG+AGG - Chr2:7036370-7036389 MsG0280006848.01.T01:intron 40.0%
GAGGTCCAAGTAAGTTCTAT+TGG - Chr2:7036389-7036408 MsG0280006848.01.T01:intron 40.0%
GCACTCAGTTGAACATACAT+TGG + Chr2:7036743-7036762 None:intergenic 40.0%
GCCTGACAATTAACCATTAG+AGG - Chr2:7037701-7037720 MsG0280006848.01.T01:CDS 40.0%
GGGTTGTTCTACCAAATCTT+TGG + Chr2:7036765-7036784 None:intergenic 40.0%
TAATGGTTAATTGTCAGGCC+AGG + Chr2:7037700-7037719 None:intergenic 40.0%
TACCATCTGTCATAGAGATC+AGG + Chr2:7037668-7037687 None:intergenic 40.0%
TCAACTGAGTGCCAAAGATT+TGG - Chr2:7036751-7036770 MsG0280006848.01.T01:intron 40.0%
TCATGTGAAGGATGAGTGTT+TGG - Chr2:7036290-7036309 MsG0280006848.01.T01:intron 40.0%
TGTCTCGGAGGATCAAATTT+AGG + Chr2:7037795-7037814 None:intergenic 40.0%
TTCCTGATCTCTATGACAGA+TGG - Chr2:7037663-7037682 MsG0280006848.01.T01:CDS 40.0%
TTGGTGTATGAAGATGGTGA+TGG - Chr2:7036246-7036265 MsG0280006848.01.T01:intron 40.0%
TTTGATCCTCCGAGACAAAT+TGG - Chr2:7037798-7037817 MsG0280006848.01.T01:CDS 40.0%
! ATTCTACTGTGGATTTTGGG+TGG - Chr2:7036939-7036958 MsG0280006848.01.T01:CDS 40.0%
! CACTTGGTAGAAACTTGCTT+GGG - Chr2:7036984-7037003 MsG0280006848.01.T01:intron 40.0%
! CCATTCACTTTGTGATGGAA+TGG - Chr2:7036064-7036083 MsG0280006848.01.T01:CDS 40.0%
! GCTAGTGCTGAGAAAAAGAA+TGG - Chr2:7037043-7037062 MsG0280006848.01.T01:intron 40.0%
! GGTCATTCTACTGTGGATTT+TGG - Chr2:7036935-7036954 MsG0280006848.01.T01:CDS 40.0%
! TTCACTGATTGGAGACACTT+GGG - Chr2:7036914-7036933 MsG0280006848.01.T01:CDS 40.0%
! TTTCACTGATTGGAGACACT+TGG - Chr2:7036913-7036932 MsG0280006848.01.T01:CDS 40.0%
!! AGGTTTGGTGAATTTGAGTG+AGG - Chr2:7037071-7037090 MsG0280006848.01.T01:intron 40.0%
!! CTCATTATCCTCCACTTTTG+AGG + Chr2:7036637-7036656 None:intergenic 40.0%
!! GGAGTTTTGGTGTATGAAGA+TGG - Chr2:7036240-7036259 MsG0280006848.01.T01:intron 40.0%
!! TTCTACTGTGGATTTTGGGT+GGG - Chr2:7036940-7036959 MsG0280006848.01.T01:CDS 40.0%
!!! GACACTTTTTTTCAACGCGA+TGG - Chr2:7036091-7036110 MsG0280006848.01.T01:intron 40.0%
!!! GAGAGAGTGTTTTCATGTGA+AGG - Chr2:7036278-7036297 MsG0280006848.01.T01:intron 40.0%
ACACTTGGGTCATTCTACTG+TGG - Chr2:7036928-7036947 MsG0280006848.01.T01:CDS 45.0%
AGTAAAGCCATCACTTCTGC+TGG - Chr2:7036695-7036714 MsG0280006848.01.T01:intron 45.0%
CCAAGCAAGTTTCTACCAAG+TGG + Chr2:7036986-7037005 None:intergenic 45.0%
CCAAGTGGCAAAACAGTAAC+TGG + Chr2:7036971-7036990 None:intergenic 45.0%
CCAATATCCAGCAGAAGTGA+TGG + Chr2:7036705-7036724 None:intergenic 45.0%
CCATCACTTCTGCTGGATAT+TGG - Chr2:7036702-7036721 MsG0280006848.01.T01:intron 45.0%
CCCTGTAGTAGCAATTACCA+TGG + Chr2:7036608-7036627 None:intergenic 45.0%
CCTACAAAACTATTGCCGAG+TGG + Chr2:7037752-7037771 None:intergenic 45.0%
TATCGTCAAATGCGAGACTC+GGG + Chr2:7037156-7037175 None:intergenic 45.0%
TCAGCACTAGCCGTTGAATA+AGG + Chr2:7037034-7037053 None:intergenic 45.0%
TCCCAGGTTCCAATTTGTCT+CGG + Chr2:7037810-7037829 None:intergenic 45.0%
TCCGAGACAAATTGGAACCT+GGG - Chr2:7037806-7037825 MsG0280006848.01.T01:CDS 45.0%
TCGTGGCAAGGAACATATCA+CGG - Chr2:7036124-7036143 MsG0280006848.01.T01:intron 45.0%
TCTGCTGGATATTGGGGAAA+TGG - Chr2:7036710-7036729 MsG0280006848.01.T01:intron 45.0%
! CACTTTGTGATGGAATGGGT+GGG - Chr2:7036069-7036088 MsG0280006848.01.T01:intron 45.0%
! CCACTTGGTAGAAACTTGCT+TGG - Chr2:7036983-7037002 MsG0280006848.01.T01:intron 45.0%
! CCAGTTACTGTTTTGCCACT+TGG - Chr2:7036968-7036987 MsG0280006848.01.T01:intron 45.0%
! TCACTTTGTGATGGAATGGG+TGG - Chr2:7036068-7036087 MsG0280006848.01.T01:intron 45.0%
! TTAGGAGCGATCCAAGCTTT+TGG + Chr2:7037777-7037796 None:intergenic 45.0%
!! AGCTCTGCTGTTTCCCAAAT+GGG + Chr2:7036785-7036804 None:intergenic 45.0%
!! TAGCTCTGCTGTTTCCCAAA+TGG + Chr2:7036786-7036805 None:intergenic 45.0%
!! TCTACTGTGGATTTTGGGTG+GGG - Chr2:7036941-7036960 MsG0280006848.01.T01:intron 45.0%
!!! CAAGTCACCGTTTTCAAGTG+CGG - Chr2:7036014-7036033 MsG0280006848.01.T01:CDS 45.0%
!!! CCACTCGGCAATAGTTTTGT+AGG - Chr2:7037749-7037768 MsG0280006848.01.T01:CDS 45.0%
AACTTCTCTCTCTCCCACAC+TGG + Chr2:7036155-7036174 None:intergenic 50.0%
AGAGAGAAGTTGTGGGTCCA+AGG - Chr2:7036164-7036183 MsG0280006848.01.T01:intron 50.0%
ATATCACGGTGAAGCCAGTG+TGG - Chr2:7036138-7036157 MsG0280006848.01.T01:intron 50.0%
ATGCTGATGGGATCACAGCA+GGG - Chr2:7036876-7036895 MsG0280006848.01.T01:CDS 50.0%
ATGGGATCACAGCAGGGAAA+TGG - Chr2:7036882-7036901 MsG0280006848.01.T01:CDS 50.0%
CAGGGTAAAGGCCTCAAAAG+TGG - Chr2:7036623-7036642 MsG0280006848.01.T01:intron 50.0%
CAGGTTCCAATTTGTCTCGG+AGG + Chr2:7037807-7037826 None:intergenic 50.0%
CTCCGAGACAAATTGGAACC+TGG - Chr2:7037805-7037824 MsG0280006848.01.T01:CDS 50.0%
GAACCCACCGCACTTGAAAA+CGG + Chr2:7036024-7036043 None:intergenic 50.0%
GAACCTGGGAAGACATTGCA+GGG - Chr2:7037820-7037839 MsG0280006848.01.T01:CDS 50.0%
GAGAGAAGTTGTGGGTCCAA+GGG - Chr2:7036165-7036184 MsG0280006848.01.T01:intron 50.0%
GGGTGAGTGGTTTCACTGAT+TGG - Chr2:7036903-7036922 MsG0280006848.01.T01:CDS 50.0%
GGTAAAGGCCTCAAAAGTGG+AGG - Chr2:7036626-7036645 MsG0280006848.01.T01:intron 50.0%
GTGGGAGAGAGAGAAGTTGT+GGG - Chr2:7036157-7036176 MsG0280006848.01.T01:intron 50.0%
TATCACGGTGAAGCCAGTGT+GGG - Chr2:7036139-7036158 MsG0280006848.01.T01:intron 50.0%
TATGCTGATGGGATCACAGC+AGG - Chr2:7036875-7036894 MsG0280006848.01.T01:CDS 50.0%
TGGGATCACAGCAGGGAAAT+GGG - Chr2:7036883-7036902 MsG0280006848.01.T01:CDS 50.0%
TGTGGGAGAGAGAGAAGTTG+TGG - Chr2:7036156-7036175 MsG0280006848.01.T01:intron 50.0%
TTTCAACGCGATGGCTGAGT+TGG - Chr2:7036100-7036119 MsG0280006848.01.T01:intron 50.0%
!!! TCACCGTTTTCAAGTGCGGT+GGG - Chr2:7036018-7036037 MsG0280006848.01.T01:CDS 50.0%
ACAGCAGGGAAATGGGTGAG+TGG - Chr2:7036890-7036909 MsG0280006848.01.T01:CDS 55.0%
ACCAAAGCCGAATCCACTCG+TGG + Chr2:7036196-7036215 None:intergenic 55.0%
CAGATGGTATGCTGTGACCC+TGG - Chr2:7037679-7037698 MsG0280006848.01.T01:CDS 55.0%
GGAACCTGGGAAGACATTGC+AGG - Chr2:7037819-7037838 MsG0280006848.01.T01:CDS 55.0%
! AAGTGCGGTGGGTTCACTCT+CGG - Chr2:7036029-7036048 MsG0280006848.01.T01:CDS 55.0%
! GGATGTGCCACGAGTGGATT+CGG - Chr2:7036186-7036205 MsG0280006848.01.T01:intron 55.0%
!! ACTGTGGATTTTGGGTGGGG+AGG - Chr2:7036944-7036963 MsG0280006848.01.T01:intron 55.0%
!!! GTCACCGTTTTCAAGTGCGG+TGG - Chr2:7036017-7036036 MsG0280006848.01.T01:CDS 55.0%
GCTCCCTGCAATGTCTTCCC+AGG + Chr2:7037826-7037845 None:intergenic 60.0%
TCCAAGGGATGTGCCACGAG+TGG - Chr2:7036180-7036199 MsG0280006848.01.T01:intron 60.0%
TCCACTCGTGGCACATCCCT+TGG + Chr2:7036184-7036203 None:intergenic 60.0%
! GCCACGAGTGGATTCGGCTT+TGG - Chr2:7036192-7036211 MsG0280006848.01.T01:intron 60.0%
!! GCGATGGCTGAGTTGGCTCG+TGG - Chr2:7036107-7036126 MsG0280006848.01.T01:intron 65.0%
!! GGCTGAGTTGGCTCGTGGCA+AGG - Chr2:7036112-7036131 MsG0280006848.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 7036008 7037848 7036008 ID=MsG0280006848.01;Name=MsG0280006848.01
Chr2 mRNA 7036008 7037848 7036008 ID=MsG0280006848.01.T01;Parent=MsG0280006848.01;Name=MsG0280006848.01.T01;_AED=0.50;_eAED=0.59;_QI=0|0|0|1|1|1|4|0|192
Chr2 exon 7037643 7037848 7037643 ID=MsG0280006848.01.T01:exon:2099;Parent=MsG0280006848.01.T01
Chr2 exon 7037112 7037230 7037112 ID=MsG0280006848.01.T01:exon:2098;Parent=MsG0280006848.01.T01
Chr2 exon 7036784 7036959 7036784 ID=MsG0280006848.01.T01:exon:2097;Parent=MsG0280006848.01.T01
Chr2 exon 7036008 7036085 7036008 ID=MsG0280006848.01.T01:exon:2096;Parent=MsG0280006848.01.T01
Chr2 CDS 7037643 7037848 7037643 ID=MsG0280006848.01.T01:cds;Parent=MsG0280006848.01.T01
Chr2 CDS 7037112 7037230 7037112 ID=MsG0280006848.01.T01:cds;Parent=MsG0280006848.01.T01
Chr2 CDS 7036784 7036959 7036784 ID=MsG0280006848.01.T01:cds;Parent=MsG0280006848.01.T01
Chr2 CDS 7036008 7036085 7036008 ID=MsG0280006848.01.T01:cds;Parent=MsG0280006848.01.T01
Gene Sequence

>MsG0280006848.01.T01

ATGCTTCAAGTCACCGTTTTCAAGTGCGGTGGGTTCACTCTCGGTGCAGCAATTCACCATTCACTTTGTGATGGAATGGGTGGGACACTTTTTTTCAACGCGATGGCTGAGTTGGCTCGTGGCAAGGAACATATCACGGTGAAGCCAGTGTGGGAGAGAGAGAAGTTGTGGGTCCAAGGGATGTGCCACGAGTGGATTCGGCTTTGGGTAAAGGCCTCAAAAGTGGAGGATAATGAGAAGGTTAAGTTTGCATACTCAATCAACATACGAAGATTAGTAAAGCCATCACTTCTGCTGGATATTGGGGAAATGGTTGTGTTCCAATGGAAATGGGTGAGTGGTTTCACTGATTGGAGACACTTGGGTCATTCTACTGTGGATTTTGGGTGGGGAGGTCCAGTTACTGTTTTGCCACTTGGTAGAAACTTGCTTGGGAGTGTTGAGCCTTGTTACTTTTTGCCTTATTCAACGGCTAGTGCTGAGAAAAAGAATGGGTTTAAGGTTCCAAAAGCTTGGATCGCTCCTAAATTTGATCCTCCGAGACAAATTGGAACCTGGGAAGACATTGCAGGGAGCTAG

Protein sequence

>MsG0280006848.01.T01

MLQVTVFKCGGFTLGAAIHHSLCDGMGGTLFFNAMAELARGKEHITVKPVWEREKLWVQGMCHEWIRLWVKASKVEDNEKVKFAYSINIRRLVKPSLLLDIGEMVVFQWKWVSGFTDWRHLGHSTVDFGWGGPVTVLPLGRNLLGSVEPCYFLPYSTASAEKKNGFKVPKAWIAPKFDPPRQIGTWEDIAGS*