Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009297.01.T01 | XP_003616258.2 | 92.347 | 196 | 15 | 0 | 7 | 202 | 29 | 224 | 1.20E-132 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009297.01.T01 | G7KG29 | 92.347 | 196 | 15 | 0 | 7 | 202 | 29 | 224 | 5.71e-133 | 381 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047959.01 | MsG0280009297.01 | 0.802346 | 5.859249e-49 | 2.863548e-46 |
| MsG0180000470.01 | MsG0280009297.01 | 0.841034 | 6.069478e-58 | 8.806181e-55 |
| MsG0180001063.01 | MsG0280009297.01 | 0.820298 | 7.386877e-53 | 5.822103e-50 |
| MsG0180002842.01 | MsG0280009297.01 | 0.824098 | 9.701885e-54 | 8.510517e-51 |
| MsG0180003669.01 | MsG0280009297.01 | 0.836176 | 1.090862e-56 | 1.364119e-53 |
| MsG0180004275.01 | MsG0280009297.01 | 0.806140 | 9.503312e-50 | 5.119219e-47 |
| MsG0180004465.01 | MsG0280009297.01 | 0.801440 | 8.994103e-49 | 4.295503e-46 |
| MsG0180004789.01 | MsG0280009297.01 | 0.804572 | 2.025588e-49 | 1.048005e-46 |
| MsG0180005705.01 | MsG0280009297.01 | 0.800194 | 1.615467e-48 | 7.475527e-46 |
| MsG0180006134.01 | MsG0280009297.01 | 0.812868 | 3.413473e-51 | 2.194917e-48 |
| MsG0180006257.01 | MsG0280009297.01 | 0.803139 | 4.020665e-49 | 2.004975e-46 |
| MsG0280006491.01 | MsG0280009297.01 | 0.801893 | 7.263050e-49 | 3.508909e-46 |
| MsG0280006770.01 | MsG0280009297.01 | 0.827031 | 1.957794e-54 | 1.867679e-51 |
| MsG0280007459.01 | MsG0280009297.01 | 0.800586 | 1.344227e-48 | 6.282745e-46 |
| MsG0280008112.01 | MsG0280009297.01 | 0.801540 | 8.581577e-49 | 4.108741e-46 |
| MsG0280008615.01 | MsG0280009297.01 | 0.819270 | 1.268418e-52 | 9.715059e-50 |
| MsG0280009297.01 | MsG0280010443.01 | 0.815053 | 1.125551e-51 | 7.678570e-49 |
| MsG0280009297.01 | MsG0280010698.01 | 0.822729 | 2.027056e-53 | 1.710833e-50 |
| MsG0280009297.01 | MsG0380012009.01 | 0.811969 | 5.365816e-51 | 3.368587e-48 |
| MsG0280009297.01 | MsG0380012330.01 | 0.808314 | 3.290989e-50 | 1.875659e-47 |
| MsG0280009297.01 | MsG0380012403.01 | 0.808207 | 3.468757e-50 | 1.971439e-47 |
| MsG0280009297.01 | MsG0380014573.01 | 0.810541 | 1.095343e-50 | 6.620400e-48 |
| MsG0280009297.01 | MsG0380015566.01 | 0.811454 | 6.946289e-51 | 4.301619e-48 |
| MsG0280009297.01 | MsG0380016910.01 | 0.811044 | 8.524914e-51 | 5.222604e-48 |
| MsG0280009297.01 | MsG0380017680.01 | 0.812179 | 4.828771e-51 | 3.048913e-48 |
| MsG0280009297.01 | MsG0480018163.01 | 0.804328 | 2.277633e-49 | 1.171021e-46 |
| MsG0280009297.01 | MsG0480019337.01 | 0.807544 | 4.800094e-50 | 2.680903e-47 |
| MsG0280009297.01 | MsG0480019435.01 | 0.803115 | 4.066252e-49 | 2.026434e-46 |
| MsG0280009297.01 | MsG0480021536.01 | 0.811830 | 5.754461e-51 | 3.599071e-48 |
| MsG0280009297.01 | MsG0480022222.01 | 0.804207 | 2.413816e-49 | 1.237153e-46 |
| MsG0280009297.01 | MsG0480022259.01 | 0.822670 | 2.092379e-53 | 1.762966e-50 |
| MsG0280009297.01 | MsG0480022262.01 | 0.816840 | 4.494542e-52 | 3.220045e-49 |
| MsG0280009297.01 | MsG0480023654.01 | 0.802662 | 5.044384e-49 | 2.485028e-46 |
| MsG0280009297.01 | MsG0580025022.01 | 0.804002 | 2.662157e-49 | 1.357373e-46 |
| MsG0280009297.01 | MsG0580025638.01 | 0.811920 | 5.498276e-51 | 3.447074e-48 |
| MsG0280009297.01 | MsG0580027833.01 | 0.810663 | 1.030439e-50 | 6.249000e-48 |
| MsG0280009297.01 | MsG0580028527.01 | 0.800340 | 1.508630e-48 | 7.007493e-46 |
| MsG0280009297.01 | MsG0580030138.01 | 0.836328 | 9.980495e-57 | 1.253784e-53 |
| MsG0280009297.01 | MsG0680032157.01 | 0.819645 | 1.041548e-52 | 8.061406e-50 |
| MsG0280009297.01 | MsG0680033412.01 | 0.811203 | 7.874506e-51 | 4.844164e-48 |
| MsG0280009297.01 | MsG0680034565.01 | 0.806307 | 8.766864e-50 | 4.742514e-47 |
| MsG0280009297.01 | MsG0680035909.01 | 0.814371 | 1.593908e-51 | 1.067574e-48 |
| MsG0280009297.01 | MsG0780036080.01 | 0.837339 | 5.511237e-57 | 7.136702e-54 |
| MsG0280009297.01 | MsG0780036201.01 | 0.812059 | 5.128347e-51 | 3.227337e-48 |
| MsG0280009297.01 | MsG0780037592.01 | 0.812530 | 4.046826e-51 | 2.579402e-48 |
| MsG0280009297.01 | MsG0780037919.01 | 0.808236 | 3.419161e-50 | 1.944744e-47 |
| MsG0280009297.01 | MsG0780038401.01 | 0.810716 | 1.003632e-50 | 6.095092e-48 |
| MsG0280009297.01 | MsG0780038439.01 | 0.800222 | 1.594735e-48 | 7.384871e-46 |
| MsG0280009297.01 | MsG0780039252.01 | 0.806937 | 6.454797e-50 | 3.548654e-47 |
| MsG0280009297.01 | MsG0780039631.01 | 0.816093 | 6.604443e-52 | 4.636014e-49 |
| MsG0280009297.01 | MsG0780040704.01 | 0.807070 | 6.048351e-50 | 3.336722e-47 |
| MsG0280009297.01 | MsG0780041456.01 | 0.807712 | 4.420070e-50 | 2.479573e-47 |
| MsG0280009297.01 | MsG0880042186.01 | 0.803705 | 3.068219e-49 | 1.552428e-46 |
| MsG0280009297.01 | MsG0880042966.01 | 0.805419 | 1.347222e-49 | 7.123960e-47 |
| MsG0280009297.01 | MsG0880043479.01 | 0.800934 | 1.141868e-48 | 5.384326e-46 |
| MsG0280009297.01 | MsG0880043509.01 | 0.804152 | 2.477153e-49 | 1.267903e-46 |
| MsG0280009297.01 | MsG0880043941.01 | 0.812011 | 5.254818e-51 | 3.302656e-48 |
| MsG0280009297.01 | MsG0880044574.01 | 0.815269 | 1.007939e-51 | 6.917090e-49 |
| MsG0280009297.01 | MsG0880045895.01 | 0.805154 | 1.531195e-49 | 8.041978e-47 |
| MsG0280009297.01 | MsG0880046020.01 | 0.803381 | 3.581829e-49 | 1.797261e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009297.01.T01 | MTR_5g077900 | 92.347 | 196 | 15 | 0 | 7 | 202 | 29 | 224 | 1.45e-136 | 381 |
| MsG0280009297.01.T01 | MTR_0002s1270 | 92.347 | 196 | 15 | 0 | 7 | 202 | 203 | 398 | 3.97e-136 | 387 |
| MsG0280009297.01.T01 | MTR_7g046380 | 91.979 | 187 | 15 | 0 | 7 | 193 | 211 | 397 | 1.93e-129 | 370 |
| MsG0280009297.01.T01 | MTR_2g092960 | 37.688 | 199 | 119 | 2 | 7 | 204 | 1025 | 1219 | 8.18e-45 | 159 |
| MsG0280009297.01.T01 | MTR_0462s0020 | 37.500 | 184 | 109 | 2 | 19 | 200 | 112 | 291 | 3.47e-41 | 141 |
| MsG0280009297.01.T01 | MTR_8g017000 | 38.806 | 201 | 116 | 3 | 7 | 204 | 493 | 689 | 5.41e-39 | 142 |
| MsG0280009297.01.T01 | MTR_2g037270 | 38.308 | 201 | 117 | 3 | 7 | 204 | 493 | 689 | 2.55e-38 | 140 |
| MsG0280009297.01.T01 | MTR_0057s0200 | 94.915 | 59 | 3 | 0 | 146 | 204 | 1 | 59 | 3.05e-36 | 121 |
| MsG0280009297.01.T01 | MTR_3g011560 | 35.176 | 199 | 113 | 3 | 7 | 204 | 493 | 676 | 3.62e-34 | 128 |
| MsG0280009297.01.T01 | MTR_4g066320 | 84.127 | 63 | 9 | 1 | 143 | 204 | 59 | 121 | 1.08e-33 | 117 |
| MsG0280009297.01.T01 | MTR_8g051620 | 61.538 | 78 | 30 | 0 | 7 | 84 | 29 | 106 | 1.31e-30 | 108 |
| MsG0280009297.01.T01 | MTR_8g051620 | 60.000 | 80 | 32 | 0 | 7 | 86 | 29 | 108 | 1.63e-30 | 108 |
| MsG0280009297.01.T01 | MTR_3g028430 | 74.074 | 54 | 5 | 1 | 151 | 204 | 15 | 59 | 7.49e-20 | 79.7 |
| MsG0280009297.01.T01 | MTR_4g066300 | 88.235 | 34 | 4 | 0 | 142 | 175 | 5 | 38 | 1.30e-14 | 66.2 |
| MsG0280009297.01.T01 | MTR_2g086200 | 60.000 | 50 | 20 | 0 | 155 | 204 | 185 | 234 | 1.49e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAAAGTGTTTGGGATTT+TGG | 0.107550 | 2:+49681630 | MsG0280009297.01.T01:CDS |
| AAAGAGTTATATTATCTAAT+TGG | 0.208399 | 2:-49683594 | None:intergenic |
| TTGCCATTAGGTTGCTTTCT+TGG | 0.248489 | 2:-49682910 | None:intergenic |
| GCAATAGAAAGAAGGTTAAA+TGG | 0.271188 | 2:+49682080 | MsG0280009297.01.T01:CDS |
| GGATTAAAATCCAAGCATAC+TGG | 0.319311 | 2:-49681655 | None:intergenic |
| ACAAATAGATCGAAAGTGTT+TGG | 0.322044 | 2:+49681622 | MsG0280009297.01.T01:CDS |
| GTTAACATATAGAGCTTTAG+AGG | 0.328169 | 2:+49682039 | MsG0280009297.01.T01:intron |
| TCATTGCTTCATTAAGATCT+TGG | 0.330442 | 2:-49681918 | None:intergenic |
| TATAAGTCATCATCAGTTAA+TGG | 0.351177 | 2:-49683124 | None:intergenic |
| GAAATTTCTACTTAAGTTGT+TGG | 0.354277 | 2:+49683486 | MsG0280009297.01.T01:three_prime_UTR |
| TCTTGACTTGTATAAGGCTT+AGG | 0.381448 | 2:+49683177 | MsG0280009297.01.T01:CDS |
| TAATACTAAAACTAAAGTTC+AGG | 0.382008 | 2:+49681687 | MsG0280009297.01.T01:CDS |
| CAAATAGATCGAAAGTGTTT+GGG | 0.382377 | 2:+49681623 | MsG0280009297.01.T01:CDS |
| AGAGGTTCATCAACTTGCTC+AGG | 0.406730 | 2:+49682057 | MsG0280009297.01.T01:CDS |
| GACAACTAAACTATTGTCCT+TGG | 0.409668 | 2:-49681881 | None:intergenic |
| TATCCACAATCATTGCCATT+AGG | 0.411955 | 2:-49682922 | None:intergenic |
| TATACTTACTTATATAGATA+TGG | 0.415179 | 2:-49681760 | None:intergenic |
| GAGGCATCTGAATACAATAT+AGG | 0.444646 | 2:-49683519 | None:intergenic |
| CTGCTAATATTACTAAGTCT+TGG | 0.472781 | 2:+49682977 | MsG0280009297.01.T01:CDS |
| AATATTGACGTGGAAAATTG+AGG | 0.474049 | 2:+49683555 | MsG0280009297.01.T01:three_prime_UTR |
| ATATGATTTGCGAAACCAAT+GGG | 0.486055 | 2:+49683144 | MsG0280009297.01.T01:CDS |
| TAGCCAAGAAAGCAACCTAA+TGG | 0.495668 | 2:+49682907 | MsG0280009297.01.T01:intron |
| TATAAGGCTTAGGATTTACA+TGG | 0.496621 | 2:+49683187 | MsG0280009297.01.T01:exon |
| CAACCTAATGGCAATGATTG+TGG | 0.497368 | 2:+49682919 | MsG0280009297.01.T01:CDS |
| TCATCATCAGTTAATGGCGT+TGG | 0.497730 | 2:-49683118 | None:intergenic |
| CAAGAAAACAAGTTGCCCAT+TGG | 0.504204 | 2:-49683159 | None:intergenic |
| GTTAATAATTATTTGTCCCA+AGG | 0.509187 | 2:+49681864 | MsG0280009297.01.T01:CDS |
| CGTATTAGACAGTTGTTGGT+GGG | 0.518435 | 2:+49681442 | MsG0280009297.01.T01:CDS |
| AATACTAAAACTAAAGTTCA+GGG | 0.519185 | 2:+49681688 | MsG0280009297.01.T01:CDS |
| ACAACTAAACTATTGTCCTT+GGG | 0.519949 | 2:-49681880 | None:intergenic |
| TCGTATTAGACAGTTGTTGG+TGG | 0.523813 | 2:+49681441 | MsG0280009297.01.T01:CDS |
| AATATTCCAAGCTAGAAAAG+AGG | 0.529926 | 2:-49683538 | None:intergenic |
| TGCTCAGGGCAATAGAAAGA+AGG | 0.550095 | 2:+49682072 | MsG0280009297.01.T01:CDS |
| AGTTGTTGGTGGGTAATGCT+TGG | 0.552427 | 2:+49681452 | MsG0280009297.01.T01:CDS |
| GAGGTTCATCAACTTGCTCA+GGG | 0.558482 | 2:+49682058 | MsG0280009297.01.T01:CDS |
| GATTAAAATCCAAGCATACT+GGG | 0.559851 | 2:-49681654 | None:intergenic |
| CTCATCTCAGTCGTAAGCAT+CGG | 0.575955 | 2:-49683393 | None:intergenic |
| TATATGATTTGCGAAACCAA+TGG | 0.577102 | 2:+49683143 | MsG0280009297.01.T01:CDS |
| TAATATTACTAAGTCTTGGA+TGG | 0.604101 | 2:+49682981 | MsG0280009297.01.T01:CDS |
| GATCTTGGTGCATTGAACAA+AGG | 0.604500 | 2:-49681903 | None:intergenic |
| TTCAGGGACACATACAAACT+AGG | 0.610492 | 2:+49681704 | MsG0280009297.01.T01:CDS |
| TTACGATGATGATTCTGCTG+TGG | 0.615064 | 2:+49683449 | MsG0280009297.01.T01:three_prime_UTR |
| TCTACGTGTGCAGAAGACAC+TGG | 0.621651 | 2:+49681839 | MsG0280009297.01.T01:intron |
| TATTACTAAGTCTTGGATGG+AGG | 0.643493 | 2:+49682984 | MsG0280009297.01.T01:CDS |
| TCTAGCTTGGAATATTGACG+TGG | 0.663259 | 2:+49683545 | MsG0280009297.01.T01:three_prime_UTR |
| GCTGAAAATTGATTATGATG+TGG | 0.703535 | 2:+49683354 | MsG0280009297.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTCAAATTATTTAGAAA+GGG | + | Chr2:49682583-49682602 | MsG0280009297.01.T01:intron | 15.0% |
| !! | AAAGAGTTATATTATCTAAT+TGG | - | Chr2:49683597-49683616 | None:intergenic | 15.0% |
| !! | AACTAATCACTTTATAAAAA+TGG | + | Chr2:49682873-49682892 | MsG0280009297.01.T01:intron | 15.0% |
| !! | GTATTATACAAAAGAATTAT+TGG | - | Chr2:49682781-49682800 | None:intergenic | 15.0% |
| !! | TAAACTCAAATTATTTAGAA+AGG | + | Chr2:49682582-49682601 | MsG0280009297.01.T01:intron | 15.0% |
| !! | TATACTTACTTATATAGATA+TGG | - | Chr2:49681763-49681782 | None:intergenic | 15.0% |
| !!! | AGAAGATTGTAAATTTTTTA+TGG | - | Chr2:49682356-49682375 | None:intergenic | 15.0% |
| !!! | CTTTGATGATTTTTTTAATT+TGG | + | Chr2:49682017-49682036 | MsG0280009297.01.T01:intron | 15.0% |
| !!! | CTTTTATACTATTATCAATA+TGG | + | Chr2:49681520-49681539 | MsG0280009297.01.T01:intron | 15.0% |
| !!! | TGTTAATTTTAAATTTGTCT+AGG | + | Chr2:49681575-49681594 | MsG0280009297.01.T01:intron | 15.0% |
| !! | AACACTTAAATATTGAATTG+TGG | - | Chr2:49681559-49681578 | None:intergenic | 20.0% |
| !! | AATACTAAAACTAAAGTTCA+GGG | + | Chr2:49681688-49681707 | MsG0280009297.01.T01:CDS | 20.0% |
| !! | AATTGAAAACATATAGGTTT+AGG | + | Chr2:49682415-49682434 | MsG0280009297.01.T01:intron | 20.0% |
| !! | ATTGAAAACATATAGGTTTA+GGG | + | Chr2:49682416-49682435 | MsG0280009297.01.T01:intron | 20.0% |
| !! | TAAAGTAAAAAAATTCACTG+AGG | + | Chr2:49682614-49682633 | MsG0280009297.01.T01:intron | 20.0% |
| !! | TAATACAAGAAACAATCATA+CGG | - | Chr2:49682163-49682182 | None:intergenic | 20.0% |
| !! | TAATACTAAAACTAAAGTTC+AGG | + | Chr2:49681687-49681706 | MsG0280009297.01.T01:CDS | 20.0% |
| !!! | AGATTGTAAATTTTTTATGG+AGG | - | Chr2:49682353-49682372 | None:intergenic | 20.0% |
| !!! | ATTGTTTCTTGTATTAAAAG+TGG | + | Chr2:49682167-49682186 | MsG0280009297.01.T01:intron | 20.0% |
| !!! | GTTTTAGTATTATGATCTTT+TGG | - | Chr2:49681679-49681698 | None:intergenic | 20.0% |
| !!! | TAAACCTATATGTTTTCAAT+TGG | - | Chr2:49682416-49682435 | None:intergenic | 20.0% |
| ! | AAATATACAGGGAACAATTA+AGG | - | Chr2:49682139-49682158 | None:intergenic | 25.0% |
| ! | AATCATACGGAAAATATACA+GGG | - | Chr2:49682150-49682169 | None:intergenic | 25.0% |
| ! | ACGTAGAAGAACAATTATTA+AGG | - | Chr2:49681826-49681845 | None:intergenic | 25.0% |
| ! | CAAATGTCAAATTATGAGAT+TGG | - | Chr2:49683225-49683244 | None:intergenic | 25.0% |
| ! | GTTAATAATTATTTGTCCCA+AGG | + | Chr2:49681864-49681883 | MsG0280009297.01.T01:CDS | 25.0% |
| ! | TAAAAAAATTCACTGAGGTA+CGG | + | Chr2:49682619-49682638 | MsG0280009297.01.T01:intron | 25.0% |
| ! | TAATATTACTAAGTCTTGGA+TGG | + | Chr2:49682981-49683000 | MsG0280009297.01.T01:CDS | 25.0% |
| ! | TATAAGTCATCATCAGTTAA+TGG | - | Chr2:49683127-49683146 | None:intergenic | 25.0% |
| ! | TATATTAACCTACACATTGT+AGG | + | Chr2:49683084-49683103 | MsG0280009297.01.T01:intron | 25.0% |
| ! | TTGGTTAAGTAGTGTAAAAA+AGG | - | Chr2:49682762-49682781 | None:intergenic | 25.0% |
| !! | ACTTTTCTATTCTACAACTT+TGG | + | Chr2:49681479-49681498 | MsG0280009297.01.T01:CDS | 25.0% |
| !! | GAAATTTCTACTTAAGTTGT+TGG | + | Chr2:49683486-49683505 | MsG0280009297.01.T01:three_prime_UTR | 25.0% |
| !! | TAGCTTAATTGATTTAGTAG+TGG | - | Chr2:49682488-49682507 | None:intergenic | 25.0% |
| !!! | GTTATACATTTTAGTGTTGT+AGG | - | Chr2:49681998-49682017 | None:intergenic | 25.0% |
| !!! | TTGTTTTCTTGACTTGTATA+AGG | + | Chr2:49683171-49683190 | MsG0280009297.01.T01:CDS | 25.0% |
| AACAAGAACCATACTTACTT+TGG | - | Chr2:49682113-49682132 | None:intergenic | 30.0% | |
| AATATTCCAAGCTAGAAAAG+AGG | - | Chr2:49683541-49683560 | None:intergenic | 30.0% | |
| AATATTGACGTGGAAAATTG+AGG | + | Chr2:49683555-49683574 | MsG0280009297.01.T01:three_prime_UTR | 30.0% | |
| ACAACAGTATCTATTCATGA+AGG | - | Chr2:49682803-49682822 | None:intergenic | 30.0% | |
| ACAACTAAACTATTGTCCTT+GGG | - | Chr2:49681883-49681902 | None:intergenic | 30.0% | |
| ACAAGAACCATACTTACTTT+GGG | - | Chr2:49682112-49682131 | None:intergenic | 30.0% | |
| ATTATTTAGAAAGGGTAGTC+TGG | + | Chr2:49682591-49682610 | MsG0280009297.01.T01:intron | 30.0% | |
| CAATCATACGGAAAATATAC+AGG | - | Chr2:49682151-49682170 | None:intergenic | 30.0% | |
| CTGCTAATATTACTAAGTCT+TGG | + | Chr2:49682977-49682996 | MsG0280009297.01.T01:CDS | 30.0% | |
| GATTAAAATCCAAGCATACT+GGG | - | Chr2:49681657-49681676 | None:intergenic | 30.0% | |
| GCAATAGAAAGAAGGTTAAA+TGG | + | Chr2:49682080-49682099 | MsG0280009297.01.T01:CDS | 30.0% | |
| GCAGTGAAACAATATAATCT+TGG | + | Chr2:49682269-49682288 | MsG0280009297.01.T01:intron | 30.0% | |
| GCTGAAAATTGATTATGATG+TGG | + | Chr2:49683354-49683373 | MsG0280009297.01.T01:intron | 30.0% | |
| GGAGGATAAACAAGAATAAA+AGG | - | Chr2:49682335-49682354 | None:intergenic | 30.0% | |
| GTAGCCAATTGAAAACATAT+AGG | + | Chr2:49682409-49682428 | MsG0280009297.01.T01:intron | 30.0% | |
| TATAAGGCTTAGGATTTACA+TGG | + | Chr2:49683187-49683206 | MsG0280009297.01.T01:exon | 30.0% | |
| TCATTGCTTCATTAAGATCT+TGG | - | Chr2:49681921-49681940 | None:intergenic | 30.0% | |
| ! | ATATGATTTGCGAAACCAAT+GGG | + | Chr2:49683144-49683163 | MsG0280009297.01.T01:CDS | 30.0% |
| ! | GTAGAGAGTAGAATTTTGAA+CGG | + | Chr2:49683244-49683263 | MsG0280009297.01.T01:intron | 30.0% |
| ! | GTTAACATATAGAGCTTTAG+AGG | + | Chr2:49682039-49682058 | MsG0280009297.01.T01:intron | 30.0% |
| ! | TAGACTTAGCTTGATTACAT+TGG | + | Chr2:49682646-49682665 | MsG0280009297.01.T01:intron | 30.0% |
| ! | TATATGATTTGCGAAACCAA+TGG | + | Chr2:49683143-49683162 | MsG0280009297.01.T01:CDS | 30.0% |
| ! | TTTTCGTATTAGACAGTTGT+TGG | + | Chr2:49681438-49681457 | MsG0280009297.01.T01:CDS | 30.0% |
| !! | ACAAATAGATCGAAAGTGTT+TGG | + | Chr2:49681622-49681641 | MsG0280009297.01.T01:CDS | 30.0% |
| !! | CAAATAGATCGAAAGTGTTT+GGG | + | Chr2:49681623-49681642 | MsG0280009297.01.T01:CDS | 30.0% |
| AAAGCAAATTGTTGTCACCA+AGG | + | Chr2:49682440-49682459 | MsG0280009297.01.T01:intron | 35.0% | |
| AAGCAAATTGTTGTCACCAA+GGG | + | Chr2:49682441-49682460 | MsG0280009297.01.T01:intron | 35.0% | |
| AGATCTAACTCTGTTCTGTA+TGG | - | Chr2:49682682-49682701 | None:intergenic | 35.0% | |
| ATTGAAGACCTACAATGTGT+AGG | - | Chr2:49683095-49683114 | None:intergenic | 35.0% | |
| CCATGTGAATGTACAGTAAA+AGG | - | Chr2:49682250-49682269 | None:intergenic | 35.0% | |
| CTTGTATCTGTCTTAATGTG+TGG | + | Chr2:49683268-49683287 | MsG0280009297.01.T01:intron | 35.0% | |
| CTTTCTTGGCTACAAATGAA+TGG | - | Chr2:49682899-49682918 | None:intergenic | 35.0% | |
| GACAACTAAACTATTGTCCT+TGG | - | Chr2:49681884-49681903 | None:intergenic | 35.0% | |
| GATCTAACTCTGTTCTGTAT+GGG | - | Chr2:49682681-49682700 | None:intergenic | 35.0% | |
| GGATTAAAATCCAAGCATAC+TGG | - | Chr2:49681658-49681677 | None:intergenic | 35.0% | |
| TACAGAACAGAGTTAGATCT+AGG | + | Chr2:49682682-49682701 | MsG0280009297.01.T01:intron | 35.0% | |
| TATCCACAATCATTGCCATT+AGG | - | Chr2:49682925-49682944 | None:intergenic | 35.0% | |
| TATTACTAAGTCTTGGATGG+AGG | + | Chr2:49682984-49683003 | MsG0280009297.01.T01:CDS | 35.0% | |
| TGCTTCTGCTTATAAAAAGC+TGG | + | Chr2:49682726-49682745 | MsG0280009297.01.T01:intron | 35.0% | |
| ! | AGATCTAGGATTCCATTACA+TGG | + | Chr2:49682696-49682715 | MsG0280009297.01.T01:intron | 35.0% |
| ! | CCTTTTACTGTACATTCACA+TGG | + | Chr2:49682247-49682266 | MsG0280009297.01.T01:intron | 35.0% |
| ! | GAGGCATCTGAATACAATAT+AGG | - | Chr2:49683522-49683541 | None:intergenic | 35.0% |
| !! | TCTTGACTTGTATAAGGCTT+AGG | + | Chr2:49683177-49683196 | MsG0280009297.01.T01:CDS | 35.0% |
| !!! | ATCGAAAGTGTTTGGGATTT+TGG | + | Chr2:49681630-49681649 | MsG0280009297.01.T01:CDS | 35.0% |
| AAGCATGTGAGTCCATGTAA+TGG | - | Chr2:49682711-49682730 | None:intergenic | 40.0% | |
| CAACCTAATGGCAATGATTG+TGG | + | Chr2:49682919-49682938 | MsG0280009297.01.T01:CDS | 40.0% | |
| CAAGAAAACAAGTTGCCCAT+TGG | - | Chr2:49683162-49683181 | None:intergenic | 40.0% | |
| CGTATTAGACAGTTGTTGGT+GGG | + | Chr2:49681442-49681461 | MsG0280009297.01.T01:CDS | 40.0% | |
| GTATCTGTCTTAATGTGTGG+TGG | + | Chr2:49683271-49683290 | MsG0280009297.01.T01:intron | 40.0% | |
| GTTTCGTCCCAAAGTAAGTA+TGG | + | Chr2:49682102-49682121 | MsG0280009297.01.T01:intron | 40.0% | |
| TAGCCAAGAAAGCAACCTAA+TGG | + | Chr2:49682907-49682926 | MsG0280009297.01.T01:intron | 40.0% | |
| TCATCATCAGTTAATGGCGT+TGG | - | Chr2:49683121-49683140 | None:intergenic | 40.0% | |
| TCGTATTAGACAGTTGTTGG+TGG | + | Chr2:49681441-49681460 | MsG0280009297.01.T01:CDS | 40.0% | |
| TTACGATGATGATTCTGCTG+TGG | + | Chr2:49683449-49683468 | MsG0280009297.01.T01:three_prime_UTR | 40.0% | |
| TTCAGGGACACATACAAACT+AGG | + | Chr2:49681704-49681723 | MsG0280009297.01.T01:CDS | 40.0% | |
| ! | GATCTTGGTGCATTGAACAA+AGG | - | Chr2:49681906-49681925 | None:intergenic | 40.0% |
| ! | GTCTTAATGTGTGGTGGTTT+TGG | + | Chr2:49683277-49683296 | MsG0280009297.01.T01:intron | 40.0% |
| ! | TCTAGCTTGGAATATTGACG+TGG | + | Chr2:49683545-49683564 | MsG0280009297.01.T01:three_prime_UTR | 40.0% |
| ! | TTGCCATTAGGTTGCTTTCT+TGG | - | Chr2:49682913-49682932 | None:intergenic | 40.0% |
| CTAAGAAACGAACACACCCT+TGG | - | Chr2:49682460-49682479 | None:intergenic | 45.0% | |
| CTCATCTCAGTCGTAAGCAT+CGG | - | Chr2:49683396-49683415 | None:intergenic | 45.0% | |
| TGCTCAGGGCAATAGAAAGA+AGG | + | Chr2:49682072-49682091 | MsG0280009297.01.T01:CDS | 45.0% | |
| ! | AGAGGTTCATCAACTTGCTC+AGG | + | Chr2:49682057-49682076 | MsG0280009297.01.T01:CDS | 45.0% |
| ! | AGTTGTTGGTGGGTAATGCT+TGG | + | Chr2:49681452-49681471 | MsG0280009297.01.T01:CDS | 45.0% |
| ! | GAGGTTCATCAACTTGCTCA+GGG | + | Chr2:49682058-49682077 | MsG0280009297.01.T01:CDS | 45.0% |
| ! | GATTTTGGACCCAGTATGCT+TGG | + | Chr2:49681645-49681664 | MsG0280009297.01.T01:CDS | 45.0% |
| !!! | CAGATGCCTCTTTTCTAGCT+TGG | + | Chr2:49683532-49683551 | MsG0280009297.01.T01:three_prime_UTR | 45.0% |
| !! | ATAAGTAATTAATATTAATA+AGG | - | Chr2:49683067-49683086 | None:intergenic | 5.0% |
| TCTACGTGTGCAGAAGACAC+TGG | + | Chr2:49681839-49681858 | MsG0280009297.01.T01:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 49681427 | 49683620 | 49681427 | ID=MsG0280009297.01;Name=MsG0280009297.01 |
| Chr2 | mRNA | 49681427 | 49683620 | 49681427 | ID=MsG0280009297.01.T01;Parent=MsG0280009297.01;Name=MsG0280009297.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0.66|0.71|1|0.83|0.57|7|276|204 |
| Chr2 | exon | 49681427 | 49681506 | 49681427 | ID=MsG0280009297.01.T01:exon:20720;Parent=MsG0280009297.01.T01 |
| Chr2 | exon | 49681597 | 49681773 | 49681597 | ID=MsG0280009297.01.T01:exon:20721;Parent=MsG0280009297.01.T01 |
| Chr2 | exon | 49681852 | 49681956 | 49681852 | ID=MsG0280009297.01.T01:exon:20722;Parent=MsG0280009297.01.T01 |
| Chr2 | exon | 49682051 | 49682114 | 49682051 | ID=MsG0280009297.01.T01:exon:20723;Parent=MsG0280009297.01.T01 |
| Chr2 | exon | 49682910 | 49683005 | 49682910 | ID=MsG0280009297.01.T01:exon:20724;Parent=MsG0280009297.01.T01 |
| Chr2 | exon | 49683106 | 49683208 | 49683106 | ID=MsG0280009297.01.T01:exon:20725;Parent=MsG0280009297.01.T01 |
| Chr2 | exon | 49683355 | 49683620 | 49683355 | ID=MsG0280009297.01.T01:exon:20726;Parent=MsG0280009297.01.T01 |
| Chr2 | CDS | 49681427 | 49681506 | 49681427 | ID=MsG0280009297.01.T01:cds;Parent=MsG0280009297.01.T01 |
| Chr2 | CDS | 49681597 | 49681773 | 49681597 | ID=MsG0280009297.01.T01:cds;Parent=MsG0280009297.01.T01 |
| Chr2 | CDS | 49681852 | 49681956 | 49681852 | ID=MsG0280009297.01.T01:cds;Parent=MsG0280009297.01.T01 |
| Chr2 | CDS | 49682051 | 49682114 | 49682051 | ID=MsG0280009297.01.T01:cds;Parent=MsG0280009297.01.T01 |
| Chr2 | CDS | 49682910 | 49683005 | 49682910 | ID=MsG0280009297.01.T01:cds;Parent=MsG0280009297.01.T01 |
| Chr2 | CDS | 49683106 | 49683198 | 49683106 | ID=MsG0280009297.01.T01:cds;Parent=MsG0280009297.01.T01 |
| Chr2 | three_prime_UTR | 49683199 | 49683208 | 49683199 | ID=MsG0280009297.01.T01:three_prime_utr;Parent=MsG0280009297.01.T01 |
| Chr2 | three_prime_UTR | 49683355 | 49683620 | 49683355 | ID=MsG0280009297.01.T01:three_prime_utr;Parent=MsG0280009297.01.T01 |
| Gene Sequence |
| Protein sequence |
