AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010008.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010008.01.T01 MTR_2g076200 84.444 270 34 3 22 286 105 371 2.04e-162 456
MsG0280010008.01.T01 MTR_2g076210 67.399 273 76 7 22 286 100 367 2.49e-115 337
MsG0280010008.01.T01 MTR_2g020280 46.780 295 124 8 22 286 102 393 2.72e-78 243
MsG0280010008.01.T01 MTR_2g020280 46.599 294 124 8 23 286 4 294 3.74e-78 239
MsG0280010008.01.T01 MTR_5g020580 43.322 307 124 6 22 286 118 416 3.43e-77 241
MsG0280010008.01.T01 MTR_8g077195 45.302 298 129 6 22 286 116 412 4.99e-75 235
MsG0280010008.01.T01 MTR_1g022370 46.048 291 130 9 22 286 133 422 9.04e-75 234
MsG0280010008.01.T01 MTR_1g098790 43.218 317 127 7 22 286 116 431 1.23e-72 229
MsG0280010008.01.T01 MTR_2g007930 43.450 313 127 9 22 286 117 427 9.74e-68 217
MsG0280010008.01.T01 MTR_1g088960 43.234 303 121 9 22 286 113 402 4.95e-66 211
MsG0280010008.01.T01 MTR_8g077650 38.406 276 146 9 22 278 58 328 6.32e-42 147
MsG0280010008.01.T01 MTR_8g077620 39.649 285 128 13 22 277 115 384 1.06e-41 148
MsG0280010008.01.T01 MTR_8g077675 33.219 292 154 9 22 279 111 395 7.19e-32 122
MsG0280010008.01.T01 MTR_8g077640 31.655 278 117 6 21 276 157 383 5.97e-28 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010008.01.T01 AT1G53320 69.818 275 69 5 23 286 108 379 9.33e-124 358
MsG0280010008.01.T01 AT2G47900 43.434 297 132 7 22 286 115 407 3.09e-72 228
MsG0280010008.01.T01 AT2G47900 43.434 297 131 7 22 286 115 406 3.61e-72 228
MsG0280010008.01.T01 AT2G47900 43.434 297 131 7 22 286 115 406 3.61e-72 228
MsG0280010008.01.T01 AT2G18280 44.251 287 134 7 22 286 111 393 3.85e-71 224
MsG0280010008.01.T01 AT2G18280 44.251 287 134 7 22 286 111 393 3.85e-71 224
MsG0280010008.01.T01 AT1G25280 43.077 325 124 9 22 286 122 445 3.53e-70 224
MsG0280010008.01.T01 AT5G18680 43.448 290 138 9 21 286 10 297 1.46e-66 210
MsG0280010008.01.T01 AT1G76900 39.233 339 129 7 22 286 120 455 6.30e-66 213
MsG0280010008.01.T01 AT1G76900 39.233 339 129 7 22 286 120 455 6.30e-66 213
MsG0280010008.01.T01 AT1G76900 39.233 339 129 7 22 286 120 455 6.30e-66 213
MsG0280010008.01.T01 AT5G18680 43.103 290 137 9 22 286 103 389 7.54e-65 208
MsG0280010008.01.T01 AT1G47270 43.243 296 123 10 22 286 107 388 2.75e-64 207
MsG0280010008.01.T01 AT1G47270 43.243 296 123 10 22 286 131 412 4.40e-64 207
MsG0280010008.01.T01 AT1G47270 43.243 296 123 10 22 286 132 413 5.02e-64 207
MsG0280010008.01.T01 AT1G25280 46.000 250 77 7 94 286 19 267 9.45e-64 201
MsG0280010008.01.T01 AT1G25280 46.000 250 77 7 94 286 19 267 9.45e-64 201
MsG0280010008.01.T01 AT3G06380 41.017 295 135 9 21 286 4 288 7.05e-63 200
MsG0280010008.01.T01 AT1G43640 40.952 315 133 8 22 286 52 363 9.56e-62 199
MsG0280010008.01.T01 AT3G06380 41.156 294 134 9 22 286 97 380 1.87e-61 199
MsG0280010008.01.T01 AT1G43640 40.952 315 133 8 22 286 118 429 2.62e-61 200

Find 84 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGATGGTTTGGCACCATTA+TGG 0.220136 2:-62795056 None:intergenic
CTTCACAGCTCGGACTTTCT+TGG 0.231255 2:+62795000 MsG0280010008.01.T01:CDS
GCAGCCCTTGTCCGCCTTCC+AGG 0.253322 2:+62795518 MsG0280010008.01.T01:CDS
ATGAGACATAAGTTGATTTC+GGG 0.253623 2:+62792383 MsG0280010008.01.T01:CDS
AATGAGACATAAGTTGATTT+CGG 0.261135 2:+62792382 None:intergenic
CTTTCCCTCCCGGTTGGCTT+TGG 0.300866 2:-62795428 None:intergenic
CTTCAAAAGGTTGAACTTGT+AGG 0.307145 2:-62795160 None:intergenic
CGATGGTTTGGCACCATTAT+GGG 0.310618 2:-62795055 None:intergenic
GTTTAGTACCAAAGCTAGTT+AGG 0.325857 2:-62795554 None:intergenic
GCCATTTGCCTAACTAGCTT+TGG 0.333355 2:+62795546 MsG0280010008.01.T01:CDS
TGGCACCATTATGGGGTGGC+TGG 0.351579 2:-62795047 None:intergenic
GGCAAAACGCCGGCTAGCTC+TGG 0.355300 2:-62795082 None:intergenic
TTGAGGGCTTATCTGTTTGC+TGG 0.356555 2:-62795103 None:intergenic
ACTGACTGCAAGCCTGTATC+AGG 0.363573 2:-62793604 None:intergenic
AACTAGCTTTGGTACTAAAC+TGG 0.385771 2:+62795557 MsG0280010008.01.T01:CDS
AACAGTACTTACATGATGTA+AGG 0.402699 2:-62792526 None:intergenic
TGCTGGTGCTTGAACTTTCA+TGG 0.404252 2:+62795354 MsG0280010008.01.T01:CDS
TCTTCATCTCCTTTCCCTCC+CGG 0.407140 2:-62795438 None:intergenic
GAAACGGTTCTCCTCCAGTT+TGG 0.411512 2:+62795459 MsG0280010008.01.T01:CDS
CGTCCCCTACTTTACCAAAC+TGG 0.415882 2:-62795473 None:intergenic
TACTGTGGACCAAAGCCAAC+CGG 0.423752 2:+62795419 MsG0280010008.01.T01:CDS
TTGGCCCTCTCGACTTCAAA+AGG 0.424052 2:-62795173 None:intergenic
AAAGTTTCCTGTCTCATCAA+TGG 0.435431 2:+62795215 MsG0280010008.01.T01:CDS
AAAATTGCTGATCCTGATAC+AGG 0.441684 2:+62793592 MsG0280010008.01.T01:CDS
AGCTCTGGCACACGATGGTT+TGG 0.442139 2:-62795067 None:intergenic
ATACCTTCACCATGGACTAT+AGG 0.445930 2:+62795496 MsG0280010008.01.T01:CDS
TCCTCCAGTTTGGTAAAGTA+GGG 0.446113 2:+62795469 MsG0280010008.01.T01:CDS
CAAAGCCAACCGGGAGGGAA+AGG 0.450993 2:+62795429 MsG0280010008.01.T01:CDS
CTCCTCCAGTTTGGTAAAGT+AGG 0.453347 2:+62795468 MsG0280010008.01.T01:CDS
GGCATGAGCATTTGCAATGC+TGG 0.463812 2:+62795337 MsG0280010008.01.T01:CDS
AAACGCCTGGAAGGCGGACA+AGG 0.466204 2:-62795523 None:intergenic
TCCGCTTTATAAGACAATGA+TGG 0.469186 2:-62792469 None:intergenic
GACAGCCAGCCACCCCATAA+TGG 0.478762 2:+62795042 MsG0280010008.01.T01:CDS
ACCAAAGCTAGTTAGGCAAA+TGG 0.480991 2:-62795547 None:intergenic
AAGTTTCCTGTCTCATCAAT+GGG 0.481200 2:+62795216 MsG0280010008.01.T01:CDS
CCGCTTTATAAGACAATGAT+GGG 0.481752 2:-62792468 None:intergenic
CATCTCCTTTCCCTCCCGGT+TGG 0.483246 2:-62795434 None:intergenic
AGTGAGCACATCATCCTCCT+TGG 0.487846 2:-62795192 None:intergenic
TGCTGGTAACTTCGAGGCAG+GGG 0.489666 2:+62795131 MsG0280010008.01.T01:CDS
TTAGGCAAATGGCAAACGCC+TGG 0.502545 2:-62795536 None:intergenic
CTTTCACCCATTGATGAGAC+AGG 0.505376 2:-62795222 None:intergenic
ATGATGTAAGGGCGAGATAG+AGG 0.507033 2:-62792514 None:intergenic
CTTTCAGCTGGTTGCTACTG+TGG 0.512635 2:+62795404 MsG0280010008.01.T01:CDS
CCTGCTGGTAACTTCGAGGC+AGG 0.517968 2:+62795129 MsG0280010008.01.T01:CDS
ATCAGTGAAGAACTTTCAGC+TGG 0.522886 2:+62795392 MsG0280010008.01.T01:CDS
TGCAAATGCTCATGCCACCT+TGG 0.523848 2:-62795330 None:intergenic
CCCATCATTGTCTTATAAAG+CGG 0.524392 2:+62792468 MsG0280010008.01.T01:CDS
TGGGGAAGATCACGTGGTCC+TGG 0.524705 2:-62792449 None:intergenic
AAGTTACCAGCAGGAACTTG+AGG 0.529054 2:-62795120 None:intergenic
GCTGAATTGTCTTCACAGCT+CGG 0.536398 2:+62794990 MsG0280010008.01.T01:CDS
CATCGTGTGCCAGAGCTAGC+CGG 0.539800 2:+62795073 MsG0280010008.01.T01:CDS
ATAAGCCCTCAAGTTCCTGC+TGG 0.547760 2:+62795114 MsG0280010008.01.T01:CDS
AGTTACCAGCAGGAACTTGA+GGG 0.551679 2:-62795119 None:intergenic
CTGCTGGTAACTTCGAGGCA+GGG 0.552365 2:+62795130 MsG0280010008.01.T01:CDS
GATGGTTTGGCACCATTATG+GGG 0.557500 2:-62795054 None:intergenic
GGCGAGATAGAGGTAAAATG+TGG 0.568448 2:-62792504 None:intergenic
GCTGTCGTAAATTGTGAAGT+TGG 0.573043 2:-62795025 None:intergenic
CAAGGGCTGCCTATAGTCCA+TGG 0.582759 2:-62795505 None:intergenic
AGGGAAAGGAGATGAAGAAA+CGG 0.585294 2:+62795443 MsG0280010008.01.T01:CDS
AACGCCTGGAAGGCGGACAA+GGG 0.585668 2:-62795522 None:intergenic
TCTGTTTGCTGGCAAAACGC+CGG 0.592503 2:-62795092 None:intergenic
AGTTCCTGCTGGTAACTTCG+AGG 0.598795 2:+62795125 MsG0280010008.01.T01:CDS
GCAAATGGCAAACGCCTGGA+AGG 0.600612 2:-62795532 None:intergenic
ACAGTACTTACATGATGTAA+GGG 0.604759 2:-62792525 None:intergenic
CCTGCCTCGAAGTTACCAGC+AGG 0.604926 2:-62795129 None:intergenic
ACTGTGGACCAAAGCCAACC+GGG 0.622254 2:+62795420 MsG0280010008.01.T01:CDS
AATGGCAAACGCCTGGAAGG+CGG 0.622747 2:-62795529 None:intergenic
CTGCCTATAGTCCATGGTGA+AGG 0.631313 2:-62795499 None:intergenic
CCTCCAGTTTGGTAAAGTAG+GGG 0.636441 2:+62795470 MsG0280010008.01.T01:CDS
TGGACCAAAGCCAACCGGGA+GGG 0.641249 2:+62795424 MsG0280010008.01.T01:CDS
CAATGATGGGGAAGATCACG+TGG 0.646996 2:-62792455 None:intergenic
CTTTCATGGTCGTGTGACAG+TGG 0.649357 2:+62795368 MsG0280010008.01.T01:CDS
TCTTGAAGAACAAAGCTCCA+AGG 0.652245 2:+62795313 MsG0280010008.01.T01:CDS
CCCCTACTTTACCAAACTGG+AGG 0.658277 2:-62795470 None:intergenic
GGTTTGGCACCATTATGGGG+TGG 0.668160 2:-62795051 None:intergenic
CGGCTAGCTCTGGCACACGA+TGG 0.676984 2:-62795072 None:intergenic
TGAGACATAAGTTGATTTCG+GGG 0.679433 2:+62792384 MsG0280010008.01.T01:CDS
GACATAGCTTATGTAGACCT+AGG 0.681895 2:+62793563 MsG0280010008.01.T01:CDS
TGAAGTCGAGAGGGCCAAGG+AGG 0.682719 2:+62795178 MsG0280010008.01.T01:CDS
CGCTTTATAAGACAATGATG+GGG 0.686571 2:-62792467 None:intergenic
GAGACATAAGTTGATTTCGG+GGG 0.689609 2:+62792385 MsG0280010008.01.T01:CDS
AGGGGACGATACCTTCACCA+TGG 0.697116 2:+62795488 MsG0280010008.01.T01:CDS
TGAAGAACAAAGCTCCAAGG+TGG 0.704573 2:+62795316 MsG0280010008.01.T01:CDS
GTGGACCAAAGCCAACCGGG+AGG 0.734579 2:+62795423 MsG0280010008.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCATTAATATATAAAG+GGG + Chr2:62793190-62793209 MsG0280010008.01.T01:intron 10.0%
!! GAAATTTCATTAATATATAA+AGG + Chr2:62793188-62793207 MsG0280010008.01.T01:intron 10.0%
!! AAAACCATTAATTGAATTTA+TGG + Chr2:62794930-62794949 MsG0280010008.01.T01:intron 15.0%
!! ATTCACTATAGTTTAATATA+AGG - Chr2:62794707-62794726 None:intergenic 15.0%
!! TATACTAATTTAGTAATTGT+AGG + Chr2:62793444-62793463 MsG0280010008.01.T01:intron 15.0%
!! TTAACTAATTTAGTAATTGT+AGG + Chr2:62793499-62793518 MsG0280010008.01.T01:intron 15.0%
!! AATCAGCAATTTATAATTGT+CGG - Chr2:62793934-62793953 None:intergenic 20.0%
!! ACATTCTTATTATGTAAATC+TGG + Chr2:62793417-62793436 MsG0280010008.01.T01:intron 20.0%
!! ATTTACTGTAAACATATGTT+TGG + Chr2:62793766-62793785 MsG0280010008.01.T01:intron 20.0%
!! CAACCATAAGAAAAATAAAA+AGG + Chr2:62794486-62794505 MsG0280010008.01.T01:intron 20.0%
!! TTGACCATAAATTCAATTAA+TGG - Chr2:62794937-62794956 None:intergenic 20.0%
!! TTTCAACCATCTATAAAAAA+AGG - Chr2:62792574-62792593 None:intergenic 20.0%
!!! ATTATTTTTGCATTTAAGCA+TGG + Chr2:62793301-62793320 MsG0280010008.01.T01:intron 20.0%
!!! CAAGAGTTTTTGTATAAATA+AGG - Chr2:62794799-62794818 None:intergenic 20.0%
!!! CTTTGATCTTAGATATTTTT+AGG - Chr2:62794608-62794627 None:intergenic 20.0%
!!! GTTCCTTTTTATTTTTCTTA+TGG - Chr2:62794492-62794511 None:intergenic 20.0%
!!! TACATTTTCTTTGATGTTTT+GGG + Chr2:62793977-62793996 MsG0280010008.01.T01:intron 20.0%
!!! TACTTAATTCTATCATCTTT+TGG + Chr2:62793334-62793353 MsG0280010008.01.T01:intron 20.0%
!!! TTACATTTTCTTTGATGTTT+TGG + Chr2:62793976-62793995 MsG0280010008.01.T01:intron 20.0%
!!! TTTTATTTTTCTTATGGTTG+AGG - Chr2:62794486-62794505 None:intergenic 20.0%
!!! TTTTTATCCTTTTTGTTGAA+TGG + Chr2:62794263-62794282 MsG0280010008.01.T01:intron 20.0%
!!! TTTTTGCCTTTTTTTATAGA+TGG + Chr2:62792565-62792584 MsG0280010008.01.T01:intron 20.0%
! AAATGATGATAGTTAGTACA+AGG + Chr2:62793890-62793909 MsG0280010008.01.T01:intron 25.0%
! AATATATTTGTCAAACCACA+TGG + Chr2:62792814-62792833 MsG0280010008.01.T01:intron 25.0%
! ACAAATCATAGTATGCATTT+AGG - Chr2:62793267-62793286 None:intergenic 25.0%
! ATGATAGAATTAAGTAACCA+TGG - Chr2:62793330-62793349 None:intergenic 25.0%
! TAAAAGGATATCATACAACT+CGG - Chr2:62792609-62792628 None:intergenic 25.0%
! TTCTTATTATGTAAATCTGG+AGG + Chr2:62793420-62793439 MsG0280010008.01.T01:intron 25.0%
! TTGTATAAATAAGGCTAAGA+GGG - Chr2:62794790-62794809 None:intergenic 25.0%
! TTTGTATAAATAAGGCTAAG+AGG - Chr2:62794791-62794810 None:intergenic 25.0%
!! AAAGGAACTTACTCTTTTAA+AGG + Chr2:62794504-62794523 MsG0280010008.01.T01:intron 25.0%
!! AAATGCATACTATGATTTGT+TGG + Chr2:62793267-62793286 MsG0280010008.01.T01:intron 25.0%
!! AAGCTTATCTTTTCTTATTG+TGG - Chr2:62793070-62793089 None:intergenic 25.0%
!! AGCTTATCTTTTCTTATTGT+GGG - Chr2:62793069-62793088 None:intergenic 25.0%
!! ATATCCTTTTATCTTCCTAT+GGG + Chr2:62792618-62792637 MsG0280010008.01.T01:intron 25.0%
!!! GAAACATTTTATTTCTTTCC+TGG - Chr2:62794221-62794240 None:intergenic 25.0%
!!! GATTTTAAAAATCCAAAGCA+CGG + Chr2:62794635-62794654 MsG0280010008.01.T01:intron 25.0%
AAAACTCTTGATGTGTATGT+TGG + Chr2:62794809-62794828 MsG0280010008.01.T01:intron 30.0%
AAACAACTCTCTTTCAATCA+TGG - Chr2:62793814-62793833 None:intergenic 30.0%
AAACCAAACTAGTTAGGAAT+AGG - Chr2:62792934-62792953 None:intergenic 30.0%
AAAGGAATATTCACTACTAC+AGG - Chr2:62793664-62793683 None:intergenic 30.0%
AACAGTACTTACATGATGTA+AGG - Chr2:62792529-62792548 None:intergenic 30.0%
ACAAAAAGTTATTTGCTTCC+AGG + Chr2:62794200-62794219 MsG0280010008.01.T01:intron 30.0%
ACAGTACTTACATGATGTAA+GGG - Chr2:62792528-62792547 None:intergenic 30.0%
ACTACTACAGGAAAAGAAAA+AGG - Chr2:62793652-62793671 None:intergenic 30.0%
AGAGAATTAGAACTTTGTGT+TGG + Chr2:62794415-62794434 MsG0280010008.01.T01:intron 30.0%
ATGAATACAGATTTCAGCAT+AGG - Chr2:62794862-62794881 None:intergenic 30.0%
ATGAGTAAATTGAACAAGGT+AGG - Chr2:62792911-62792930 None:intergenic 30.0%
ATTCCTTTGTAGTAGTTATG+TGG + Chr2:62793676-62793695 MsG0280010008.01.T01:intron 30.0%
CACCAATATTATGTAGCTTT+GGG - Chr2:62794749-62794768 None:intergenic 30.0%
CGATATAACATACTCAGTAT+GGG - Chr2:62794111-62794130 None:intergenic 30.0%
GTTGATCGTATAAAGTCTAA+TGG + Chr2:62792648-62792667 MsG0280010008.01.T01:intron 30.0%
TACTGTAAACATATGTTTGG+TGG + Chr2:62793769-62793788 MsG0280010008.01.T01:intron 30.0%
TAGGATGAGTAAATTGAACA+AGG - Chr2:62792915-62792934 None:intergenic 30.0%
TATTAGCAGCTAGAAGATAT+AGG + Chr2:62794078-62794097 MsG0280010008.01.T01:intron 30.0%
TCACCAATATTATGTAGCTT+TGG - Chr2:62794750-62794769 None:intergenic 30.0%
TCCAATTCTTGAGCAATTAA+TGG + Chr2:62793733-62793752 MsG0280010008.01.T01:intron 30.0%
TCCATTAATTGCTCAAGAAT+TGG - Chr2:62793737-62793756 None:intergenic 30.0%
TGAAATCTGTATTCATAGCT+TGG + Chr2:62794866-62794885 MsG0280010008.01.T01:intron 30.0%
! AATGTTTTCAGAGATTGAAG+TGG + Chr2:62793133-62793152 MsG0280010008.01.T01:intron 30.0%
! ATTCCTAACTAGTTTGGTTT+AGG + Chr2:62792934-62792953 MsG0280010008.01.T01:intron 30.0%
! GATATCCTTTTATCTTCCTA+TGG + Chr2:62792617-62792636 MsG0280010008.01.T01:intron 30.0%
! TATCCTTTTATCTTCCTATG+GGG + Chr2:62792619-62792638 MsG0280010008.01.T01:intron 30.0%
! TTCCTAACTAGTTTGGTTTA+GGG + Chr2:62792935-62792954 MsG0280010008.01.T01:intron 30.0%
!! ACATCATGTAAGTACTGTTT+TGG + Chr2:62792530-62792549 MsG0280010008.01.T01:intron 30.0%
!! ATGAGACATAAGTTGATTTC+GGG + Chr2:62792383-62792402 MsG0280010008.01.T01:CDS 30.0%
!!! GATATTTTAGCTTTCCGTTA+CGG + Chr2:62793014-62793033 MsG0280010008.01.T01:intron 30.0%
AAAATTGCTGATCCTGATAC+AGG + Chr2:62793592-62793611 MsG0280010008.01.T01:CDS 35.0%
AAAGTTTCCTGTCTCATCAA+TGG + Chr2:62795215-62795234 MsG0280010008.01.T01:CDS 35.0%
AACCCTAAACCAAACTAGTT+AGG - Chr2:62792940-62792959 None:intergenic 35.0%
AAGTTTCCTGTCTCATCAAT+GGG + Chr2:62795216-62795235 MsG0280010008.01.T01:CDS 35.0%
AGATCTGCAAAACATCTCAT+TGG + Chr2:62792687-62792706 MsG0280010008.01.T01:intron 35.0%
CAACCACATAACTACTACAA+AGG - Chr2:62793682-62793701 None:intergenic 35.0%
CAAGGAAGTAATGCTTATGT+TGG + Chr2:62794152-62794171 MsG0280010008.01.T01:intron 35.0%
CACCCAAAGCTACATAATAT+TGG + Chr2:62794744-62794763 MsG0280010008.01.T01:intron 35.0%
CATCCTATTCCTAACTAGTT+TGG + Chr2:62792928-62792947 MsG0280010008.01.T01:intron 35.0%
CATCTCATTGGTCAAATGTA+TGG + Chr2:62792699-62792718 MsG0280010008.01.T01:intron 35.0%
CCCATCATTGTCTTATAAAG+CGG + Chr2:62792468-62792487 MsG0280010008.01.T01:CDS 35.0%
CCGCTTTATAAGACAATGAT+GGG - Chr2:62792471-62792490 None:intergenic 35.0%
CGCTTTATAAGACAATGATG+GGG - Chr2:62792470-62792489 None:intergenic 35.0%
CTTCAAAAGGTTGAACTTGT+AGG - Chr2:62795163-62795182 None:intergenic 35.0%
GCGATATAACATACTCAGTA+TGG - Chr2:62794112-62794131 None:intergenic 35.0%
GTATGGCAAACATTACTTGT+GGG + Chr2:62792716-62792735 MsG0280010008.01.T01:intron 35.0%
GTTTAGTACCAAAGCTAGTT+AGG - Chr2:62795557-62795576 None:intergenic 35.0%
GTTTGTAACTGTGTGATTTG+TGG + Chr2:62793830-62793849 MsG0280010008.01.T01:intron 35.0%
TAATTCTCTGTTTCCTACCA+AGG - Chr2:62794404-62794423 None:intergenic 35.0%
TATGGCAAACATTACTTGTG+GGG + Chr2:62792717-62792736 MsG0280010008.01.T01:intron 35.0%
TCCGCTTTATAAGACAATGA+TGG - Chr2:62792472-62792491 None:intergenic 35.0%
TGAAGACAATTCAGCAACTA+TGG - Chr2:62794985-62795004 None:intergenic 35.0%
TGTATGGCAAACATTACTTG+TGG + Chr2:62792715-62792734 MsG0280010008.01.T01:intron 35.0%
TTTCCTTTATCTGTGAATGC+TGG - Chr2:62794053-62794072 None:intergenic 35.0%
! CATTTAGAGCCACCATAAAA+CGG - Chr2:62792991-62793010 None:intergenic 35.0%
! GGTTTAGGGTTGTGAAATAT+CGG + Chr2:62792949-62792968 MsG0280010008.01.T01:intron 35.0%
! GTCGATTGATAACACTAGTT+TGG + Chr2:62793040-62793059 MsG0280010008.01.T01:intron 35.0%
! TCAGATAGCAAGTCTTTTGA+TGG + Chr2:62795246-62795265 MsG0280010008.01.T01:CDS 35.0%
! TCAGCAATTTTTCTAGACCT+AGG - Chr2:62793583-62793602 None:intergenic 35.0%
! TTTTCAGAGATTGAAGTGGA+AGG + Chr2:62793137-62793156 MsG0280010008.01.T01:intron 35.0%
!! AACTAGCTTTGGTACTAAAC+TGG + Chr2:62795557-62795576 MsG0280010008.01.T01:CDS 35.0%
!! ACAAAGAAGAGCTTTGTTGT+TGG + Chr2:62792747-62792766 MsG0280010008.01.T01:intron 35.0%
!! TATGTAGCTTTGGGTGTAAA+TGG - Chr2:62794740-62794759 None:intergenic 35.0%
!! TGAGACATAAGTTGATTTCG+GGG + Chr2:62792384-62792403 MsG0280010008.01.T01:CDS 35.0%
!! TTTATGGTGGCTCTAAATGA+TGG + Chr2:62792992-62793011 MsG0280010008.01.T01:intron 35.0%
ACCAAAGCTAGTTAGGCAAA+TGG - Chr2:62795550-62795569 None:intergenic 40.0%
AGCAAGTCATCTTGGAGTAT+TGG - Chr2:62792869-62792888 None:intergenic 40.0%
AGGGAAAGGAGATGAAGAAA+CGG + Chr2:62795443-62795462 MsG0280010008.01.T01:CDS 40.0%
ATCAGTGAAGAACTTTCAGC+TGG + Chr2:62795392-62795411 MsG0280010008.01.T01:CDS 40.0%
ATGCTTATGTTGGCAAGCTA+AGG + Chr2:62794162-62794181 MsG0280010008.01.T01:intron 40.0%
ATGTTGGTCAACAAAGTTGC+TGG + Chr2:62794825-62794844 MsG0280010008.01.T01:intron 40.0%
GACATAGCTTATGTAGACCT+AGG + Chr2:62793563-62793582 MsG0280010008.01.T01:CDS 40.0%
GCTGTCGTAAATTGTGAAGT+TGG - Chr2:62795028-62795047 None:intergenic 40.0%
GTACCCCATAGGAAGATAAA+AGG - Chr2:62792625-62792644 None:intergenic 40.0%
GTAGTTATGTGGTTGTCACA+TGG + Chr2:62793687-62793706 MsG0280010008.01.T01:intron 40.0%
TAAAGGGGAGATTTCATGAG+TGG + Chr2:62793205-62793224 MsG0280010008.01.T01:intron 40.0%
TATCAATCGACGAACCGTAA+CGG - Chr2:62793031-62793050 None:intergenic 40.0%
TCCTCCAGTTTGGTAAAGTA+GGG + Chr2:62795469-62795488 MsG0280010008.01.T01:CDS 40.0%
TCTTACGTGTTTCTTCTGCT+TGG + Chr2:62794239-62794258 MsG0280010008.01.T01:intron 40.0%
TCTTGAAGAACAAAGCTCCA+AGG + Chr2:62795313-62795332 MsG0280010008.01.T01:CDS 40.0%
TTGACTGAAGCAAGTCATCT+TGG - Chr2:62792877-62792896 None:intergenic 40.0%
! AACTTTGTGTTGGCACAATC+AGG + Chr2:62794425-62794444 MsG0280010008.01.T01:intron 40.0%
! ACTTTGTGTTGGCACAATCA+GGG + Chr2:62794426-62794445 MsG0280010008.01.T01:intron 40.0%
! ATACCTTCACCATGGACTAT+AGG + Chr2:62795496-62795515 MsG0280010008.01.T01:CDS 40.0%
! ATCCTTTTTGTTGAATGGCG+TGG + Chr2:62794268-62794287 MsG0280010008.01.T01:intron 40.0%
! GACTTGCTTCAGTCAATGTA+TGG + Chr2:62792881-62792900 MsG0280010008.01.T01:intron 40.0%
!! ATAAGTTGATTTCGGGGGTT+TGG + Chr2:62792390-62792409 MsG0280010008.01.T01:CDS 40.0%
!! GAGACATAAGTTGATTTCGG+GGG + Chr2:62792385-62792404 MsG0280010008.01.T01:CDS 40.0%
!! TTGGAGTATTGGACTAAGTC+TGG - Chr2:62792858-62792877 None:intergenic 40.0%
!!! TCAACCTTTTGAAGTCGAGA+GGG + Chr2:62795169-62795188 MsG0280010008.01.T01:CDS 40.0%
!!! TGTTTTGATGACTTACAGCC+AGG + Chr2:62792431-62792450 MsG0280010008.01.T01:CDS 40.0%
!!! TTCAACCTTTTGAAGTCGAG+AGG + Chr2:62795168-62795187 MsG0280010008.01.T01:CDS 40.0%
AAGTTACCAGCAGGAACTTG+AGG - Chr2:62795123-62795142 None:intergenic 45.0%
ACTAAGTCTGGTCAACTGAC+TGG - Chr2:62792846-62792865 None:intergenic 45.0%
AGCAACTATGGTCAGTACTC+AGG - Chr2:62794973-62794992 None:intergenic 45.0%
AGTTACCAGCAGGAACTTGA+GGG - Chr2:62795122-62795141 None:intergenic 45.0%
ATGAGCAGAACAGGAAAGAG+GGG - Chr2:62794028-62794047 None:intergenic 45.0%
ATGATGTAAGGGCGAGATAG+AGG - Chr2:62792517-62792536 None:intergenic 45.0%
CACCACGCCATTCAACAAAA+AGG - Chr2:62794273-62794292 None:intergenic 45.0%
CCTCCAGTTTGGTAAAGTAG+GGG + Chr2:62795470-62795489 MsG0280010008.01.T01:CDS 45.0%
CGATCAACAATGTACCCCAT+AGG - Chr2:62792636-62792655 None:intergenic 45.0%
CTCCTCCAGTTTGGTAAAGT+AGG + Chr2:62795468-62795487 MsG0280010008.01.T01:CDS 45.0%
CTTTCACCCATTGATGAGAC+AGG - Chr2:62795225-62795244 None:intergenic 45.0%
GATGAGCAGAACAGGAAAGA+GGG - Chr2:62794029-62794048 None:intergenic 45.0%
GATGCTGACGACTTATCACA+AGG + Chr2:62794134-62794153 MsG0280010008.01.T01:intron 45.0%
GCAGCTAGAAGATATAGGTG+TGG + Chr2:62794083-62794102 MsG0280010008.01.T01:intron 45.0%
GCATTTAAGCATGGTGTCCA+TGG + Chr2:62793310-62793329 MsG0280010008.01.T01:intron 45.0%
GCTGAATTGTCTTCACAGCT+CGG + Chr2:62794990-62795009 MsG0280010008.01.T01:CDS 45.0%
GGAGATTTCATGAGTGGCTA+AGG + Chr2:62793211-62793230 MsG0280010008.01.T01:intron 45.0%
GGCGAGATAGAGGTAAAATG+TGG - Chr2:62792507-62792526 None:intergenic 45.0%
TCGCCAGCATTCACAGATAA+AGG + Chr2:62794047-62794066 MsG0280010008.01.T01:intron 45.0%
TGAAGAACAAAGCTCCAAGG+TGG + Chr2:62795316-62795335 MsG0280010008.01.T01:CDS 45.0%
TGCTGGTGCTTGAACTTTCA+TGG + Chr2:62795354-62795373 MsG0280010008.01.T01:CDS 45.0%
TTGAGGGCTTATCTGTTTGC+TGG - Chr2:62795106-62795125 None:intergenic 45.0%
TTGTGAAATATCGGCCATGG+TGG + Chr2:62792958-62792977 MsG0280010008.01.T01:intron 45.0%
TTTCTCTGTTGTGATCGCCT+TGG + Chr2:62794384-62794403 MsG0280010008.01.T01:intron 45.0%
! AAAACCTTCGCTTGTTGCAG+GGG + Chr2:62794541-62794560 MsG0280010008.01.T01:intron 45.0%
! ACGATGGTTTGGCACCATTA+TGG - Chr2:62795059-62795078 None:intergenic 45.0%
! ACTGACTGGTTAGAACCATG+TGG - Chr2:62792832-62792851 None:intergenic 45.0%
! CGATGGTTTGGCACCATTAT+GGG - Chr2:62795058-62795077 None:intergenic 45.0%
! GAAAACCTTCGCTTGTTGCA+GGG + Chr2:62794540-62794559 MsG0280010008.01.T01:intron 45.0%
! GATGGTTTGGCACCATTATG+GGG - Chr2:62795057-62795076 None:intergenic 45.0%
! GCCATTTGCCTAACTAGCTT+TGG + Chr2:62795546-62795565 MsG0280010008.01.T01:CDS 45.0%
! TGAAAACCTTCGCTTGTTGC+AGG + Chr2:62794539-62794558 MsG0280010008.01.T01:intron 45.0%
!! GTAGCTTTGGGTGTAAATGG+AGG - Chr2:62794737-62794756 None:intergenic 45.0%
!! AAATTTCATTAATATATAAA+GGG + Chr2:62793189-62793208 MsG0280010008.01.T01:intron 5.0%
AAAGAGGGGCAGGGGAATAA+AGG - Chr2:62794014-62794033 None:intergenic 50.0%
ACTGACTGCAAGCCTGTATC+AGG - Chr2:62793607-62793626 None:intergenic 50.0%
AGAGCCACCATAAAACGGCA+TGG - Chr2:62792986-62793005 None:intergenic 50.0%
AGTGAGCACATCATCCTCCT+TGG - Chr2:62795195-62795214 None:intergenic 50.0%
AGTTCCTGCTGGTAACTTCG+AGG + Chr2:62795125-62795144 MsG0280010008.01.T01:CDS 50.0%
ATAAGCCCTCAAGTTCCTGC+TGG + Chr2:62795114-62795133 MsG0280010008.01.T01:CDS 50.0%
CCCCTACTTTACCAAACTGG+AGG - Chr2:62795473-62795492 None:intergenic 50.0%
CGATGAGCAGAACAGGAAAG+AGG - Chr2:62794030-62794049 None:intergenic 50.0%
CGTCCCCTACTTTACCAAAC+TGG - Chr2:62795476-62795495 None:intergenic 50.0%
CTGCCTATAGTCCATGGTGA+AGG - Chr2:62795502-62795521 None:intergenic 50.0%
CTTCACAGCTCGGACTTTCT+TGG + Chr2:62795000-62795019 MsG0280010008.01.T01:CDS 50.0%
CTTTCAGCTGGTTGCTACTG+TGG + Chr2:62795404-62795423 MsG0280010008.01.T01:CDS 50.0%
CTTTCATGGTCGTGTGACAG+TGG + Chr2:62795368-62795387 MsG0280010008.01.T01:CDS 50.0%
GAAACGGTTCTCCTCCAGTT+TGG + Chr2:62795459-62795478 MsG0280010008.01.T01:CDS 50.0%
GGCATGAGCATTTGCAATGC+TGG + Chr2:62795337-62795356 MsG0280010008.01.T01:CDS 50.0%
GGGTTGTGAAATATCGGCCA+TGG + Chr2:62792955-62792974 MsG0280010008.01.T01:intron 50.0%
TACTGTGGACCAAAGCCAAC+CGG + Chr2:62795419-62795438 MsG0280010008.01.T01:CDS 50.0%
TCTGTTGTGATCGCCTTGGT+AGG + Chr2:62794388-62794407 MsG0280010008.01.T01:intron 50.0%
TCTTCATCTCCTTTCCCTCC+CGG - Chr2:62795441-62795460 None:intergenic 50.0%
TGCAAATGCTCATGCCACCT+TGG - Chr2:62795333-62795352 None:intergenic 50.0%
TTAGGCAAATGGCAAACGCC+TGG - Chr2:62795539-62795558 None:intergenic 50.0%
TTGGCCCTCTCGACTTCAAA+AGG - Chr2:62795176-62795195 None:intergenic 50.0%
! CAATGATGGGGAAGATCACG+TGG - Chr2:62792458-62792477 None:intergenic 50.0%
! TCTGTTTGCTGGCAAAACGC+CGG - Chr2:62795095-62795114 None:intergenic 50.0%
!!! TTTTGAAGTCGAGAGGGCCA+AGG + Chr2:62795175-62795194 MsG0280010008.01.T01:CDS 50.0%
AATGGCAAACGCCTGGAAGG+CGG - Chr2:62795532-62795551 None:intergenic 55.0%
ACTGTGGACCAAAGCCAACC+GGG + Chr2:62795420-62795439 MsG0280010008.01.T01:CDS 55.0%
AGAACAGGAAAGAGGGGCAG+GGG - Chr2:62794022-62794041 None:intergenic 55.0%
AGGGGACGATACCTTCACCA+TGG + Chr2:62795488-62795507 MsG0280010008.01.T01:CDS 55.0%
ATGCTGGCGATGAGCAGAAC+AGG - Chr2:62794037-62794056 None:intergenic 55.0%
CAAGGGCTGCCTATAGTCCA+TGG - Chr2:62795508-62795527 None:intergenic 55.0%
CAGAACAGGAAAGAGGGGCA+GGG - Chr2:62794023-62794042 None:intergenic 55.0%
CTGCTGGTAACTTCGAGGCA+GGG + Chr2:62795130-62795149 MsG0280010008.01.T01:CDS 55.0%
GCAAATGGCAAACGCCTGGA+AGG - Chr2:62795535-62795554 None:intergenic 55.0%
GGTTTGGCACCATTATGGGG+TGG - Chr2:62795054-62795073 None:intergenic 55.0%
TGCTGGTAACTTCGAGGCAG+GGG + Chr2:62795131-62795150 MsG0280010008.01.T01:CDS 55.0%
! AGCTCTGGCACACGATGGTT+TGG - Chr2:62795070-62795089 None:intergenic 55.0%
! GCAGGGGTGCAAACGGATTT+CGG + Chr2:62794557-62794576 MsG0280010008.01.T01:intron 55.0%
! GCTTGTTGCAGGGGTGCAAA+CGG + Chr2:62794550-62794569 MsG0280010008.01.T01:intron 55.0%
!! AAAACGGCATGGTGCCACCA+TGG - Chr2:62792975-62792994 None:intergenic 55.0%
!!! GGCACCATGCCGTTTTATGG+TGG + Chr2:62792979-62792998 MsG0280010008.01.T01:intron 55.0%
!!! GGTGGCACCATGCCGTTTTA+TGG + Chr2:62792976-62792995 MsG0280010008.01.T01:intron 55.0%
AAACGCCTGGAAGGCGGACA+AGG - Chr2:62795526-62795545 None:intergenic 60.0%
AACGCCTGGAAGGCGGACAA+GGG - Chr2:62795525-62795544 None:intergenic 60.0%
CAAAGCCAACCGGGAGGGAA+AGG + Chr2:62795429-62795448 MsG0280010008.01.T01:CDS 60.0%
CATCGTGTGCCAGAGCTAGC+CGG + Chr2:62795073-62795092 MsG0280010008.01.T01:CDS 60.0%
CATCTCCTTTCCCTCCCGGT+TGG - Chr2:62795437-62795456 None:intergenic 60.0%
CCTGCCTCGAAGTTACCAGC+AGG - Chr2:62795132-62795151 None:intergenic 60.0%
CCTGCTGGTAACTTCGAGGC+AGG + Chr2:62795129-62795148 MsG0280010008.01.T01:CDS 60.0%
GACAGCCAGCCACCCCATAA+TGG + Chr2:62795042-62795061 MsG0280010008.01.T01:CDS 60.0%
GCAGAACAGGAAAGAGGGGC+AGG - Chr2:62794024-62794043 None:intergenic 60.0%
TGAAGTCGAGAGGGCCAAGG+AGG + Chr2:62795178-62795197 MsG0280010008.01.T01:CDS 60.0%
TGCACCCCTGCAACAAGCGA+AGG - Chr2:62794548-62794567 None:intergenic 60.0%
TGCAGTGCAGTGCCGTGCTT+TGG - Chr2:62794650-62794669 None:intergenic 60.0%
TGGACCAAAGCCAACCGGGA+GGG + Chr2:62795424-62795443 MsG0280010008.01.T01:CDS 60.0%
TGGCACCATTATGGGGTGGC+TGG - Chr2:62795050-62795069 None:intergenic 60.0%
TGGGGAAGATCACGTGGTCC+TGG - Chr2:62792452-62792471 None:intergenic 60.0%
!! CTTTCCCTCCCGGTTGGCTT+TGG - Chr2:62795431-62795450 None:intergenic 60.0%
GTGGACCAAAGCCAACCGGG+AGG + Chr2:62795423-62795442 MsG0280010008.01.T01:CDS 65.0%
! GGCAAAACGCCGGCTAGCTC+TGG - Chr2:62795085-62795104 None:intergenic 65.0%
!! CGGCTAGCTCTGGCACACGA+TGG - Chr2:62795075-62795094 None:intergenic 65.0%
GCAGCCCTTGTCCGCCTTCC+AGG + Chr2:62795518-62795537 MsG0280010008.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 62792383 62795590 62792383 ID=MsG0280010008.01;Name=MsG0280010008.01
Chr2 mRNA 62792383 62795590 62792383 ID=MsG0280010008.01.T01;Parent=MsG0280010008.01;Name=MsG0280010008.01.T01;_AED=0.49;_eAED=0.60;_QI=0|0|0|1|0|0|3|0|286
Chr2 exon 62792383 62792536 62792383 ID=MsG0280010008.01.T01:exon:34807;Parent=MsG0280010008.01.T01
Chr2 exon 62793521 62793624 62793521 ID=MsG0280010008.01.T01:exon:34808;Parent=MsG0280010008.01.T01
Chr2 exon 62794988 62795590 62794988 ID=MsG0280010008.01.T01:exon:34809;Parent=MsG0280010008.01.T01
Chr2 CDS 62792383 62792536 62792383 ID=MsG0280010008.01.T01:cds;Parent=MsG0280010008.01.T01
Chr2 CDS 62793521 62793624 62793521 ID=MsG0280010008.01.T01:cds;Parent=MsG0280010008.01.T01
Chr2 CDS 62794988 62795590 62794988 ID=MsG0280010008.01.T01:cds;Parent=MsG0280010008.01.T01
Gene Sequence

>MsG0280010008.01.T01

ATGAGACATAAGTTGATTTCGGGGGTTTGGAGTTTGACAATCTTGTTATGTTTTGATGACTTACAGCCAGGACCACGTGATCTTCCCCATCATTGTCTTATAAAGCGGAGTAAGAAGACTTCCACATTTTACCTCTATCTCGCCCTTACATCATGTCTTGACGTTAATTCTACTTCACTTGTTTTGATTAATACGCGACATAGCTTATGTAGACCTAGGTCTAGAAAAATTGCTGATCCTGATACAGGCTTGCAGTCATTGCTGAATTGTCTTCACAGCTCGGACTTTCTTGGCACCAACTTCACAATTTACGACAGCCAGCCACCCCATAATGGTGCCAAACCATCGTGTGCCAGAGCTAGCCGGCGTTTTGCCAGCAAACAGATAAGCCCTCAAGTTCCTGCTGGTAACTTCGAGGCAGGGGATGTTTCCTACAAGTTCAACCTTTTGAAGTCGAGAGGGCCAAGGAGGATGATGTGCTCACTAAAGTTTCCTGTCTCATCAATGGGTGAAAGTTCAGATAGCAAGTCTTTTGATGGTCAAAAGATGCACAGCAAAGAACATGCTGCTTCTGCGCACACAATCTTGAAGAACAAAGCTCCAAGGTGGCATGAGCATTTGCAATGCTGGTGCTTGAACTTTCATGGTCGTGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCGGGAGGGAAAGGAGATGAAGAAACGGTTCTCCTCCAGTTTGGTAAAGTAGGGGACGATACCTTCACCATGGACTATAGGCAGCCCTTGTCCGCCTTCCAGGCGTTTGCCATTTGCCTAACTAGCTTTGGTACTAAACTGGCTTGTGAGTAA

Protein sequence

>MsG0280010008.01.T01

MRHKLISGVWSLTILLCFDDLQPGPRDLPHHCLIKRSKKTSTFYLYLALTSCLDVNSTSLVLINTRHSLCRPRSRKIADPDTGLQSLLNCLHSSDFLGTNFTIYDSQPPHNGAKPSCARASRRFASKQISPQVPAGNFEAGDVSYKFNLLKSRGPRRMMCSLKFPVSSMGESSDSKSFDGQKMHSKEHAASAHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE*