AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041174.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041174.01.T01 MTR_7g105840 95.570 158 7 0 1 158 1 158 2.17e-110 310
MsG0780041174.01.T01 MTR_7g105840 95.652 138 6 0 1 138 1 138 1.04e-94 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041174.01.T01 AT2G33180 76.344 93 22 0 66 158 74 166 1.53e-48 154

Find 92 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGAACATTTAATAAATT+AGG 0.202937 7:+87584664 MsG0780041174.01.T01:three_prime_UTR
ATAGGTTTCTTCTACTTCTT+TGG 0.214007 7:+87585033 MsG0780041174.01.T01:three_prime_UTR
GGTGATTTGGGCAACGGTAT+AGG 0.256823 7:+87584961 MsG0780041174.01.T01:three_prime_UTR
GTGATTTGGGCAACGGTATA+GGG 0.304559 7:+87584962 MsG0780041174.01.T01:three_prime_UTR
AACTCTTGCTATAGAAATTC+AGG 0.324340 7:+87582934 MsG0780041174.01.T01:five_prime_UTR
ACCAACACTTGTATCAATTA+AGG 0.328965 7:-87584899 None:intergenic
AATTATAGTGCACTTTGTTA+TGG 0.349610 7:+87585073 MsG0780041174.01.T01:three_prime_UTR
GATAGTCCTGAGAATTTCTA+AGG 0.364684 7:+87583551 MsG0780041174.01.T01:CDS
GATAAGGTGACTTGGTGATT+TGG 0.366081 7:+87584948 MsG0780041174.01.T01:three_prime_UTR
CCTTCTCAATTTGAGAAGCT+TGG 0.375168 7:+87584372 MsG0780041174.01.T01:three_prime_UTR
ACTGAAAGAGATGCTGATAA+AGG 0.378200 7:-87583152 None:intergenic
TTTGAGATAATTAGCAAGTC+TGG 0.379651 7:-87583363 None:intergenic
TTAGCTTGAAGGGTCGGTTT+TGG 0.381453 7:+87583318 MsG0780041174.01.T01:CDS
TCCCCTTCACACTGATTATG+AGG 0.382972 7:+87584822 MsG0780041174.01.T01:three_prime_UTR
TCCTATTCCCAACACTCCTT+TGG 0.383151 7:+87582891 MsG0780041174.01.T01:five_prime_UTR
AACACAGTGACAGTGCCTTC+TGG 0.384818 7:-87582995 None:intergenic
AGAAAATAGACACTGATATA+TGG 0.389534 7:-87584729 None:intergenic
GGAGTGTTGGGAATAGGATA+TGG 0.395725 7:-87582886 None:intergenic
TGGTCACCAGTTTCATATCT+AGG 0.397018 7:-87584709 None:intergenic
ATAAGGTGACTTGGTGATTT+GGG 0.397109 7:+87584949 MsG0780041174.01.T01:three_prime_UTR
TTGTTTAGTTGAGTGCTTAC+GGG 0.399777 7:+87582846 MsG0780041174.01.T01:five_prime_UTR
CAATTTGAGAAGCTTGGATA+AGG 0.399848 7:+87584378 MsG0780041174.01.T01:three_prime_UTR
GTTGGTATCATTTGATCAAA+AGG 0.400167 7:+87584916 MsG0780041174.01.T01:three_prime_UTR
ATAAAAGATTATTTGCAGAT+AGG 0.406151 7:+87585015 MsG0780041174.01.T01:three_prime_UTR
ACACAGTGACAGTGCCTTCT+GGG 0.412469 7:-87582994 None:intergenic
AATAAATTAGGTGATAGTTT+CGG 0.421880 7:+87584676 MsG0780041174.01.T01:three_prime_UTR
AGCTCAACCAAAGGAGTGTT+GGG 0.428366 7:-87582898 None:intergenic
TTTGTTTAGTTGAGTGCTTA+CGG 0.430500 7:+87582845 MsG0780041174.01.T01:five_prime_UTR
CATCTGAGAGTATGTTATCA+TGG 0.431521 7:+87584562 MsG0780041174.01.T01:three_prime_UTR
ATCTTTCCTAGATATGAAAC+TGG 0.432788 7:+87584703 MsG0780041174.01.T01:three_prime_UTR
AATTTGAGAAGCTTGGATAA+GGG 0.433338 7:+87584379 MsG0780041174.01.T01:three_prime_UTR
AAACCGACCCTTCAAGCTAA+TGG 0.437576 7:-87583315 None:intergenic
AGGTTGTTGTGTAGAGTAAC+TGG 0.440719 7:-87583045 None:intergenic
GACACTTCTGTTGGTATGAC+AGG 0.448505 7:+87583254 MsG0780041174.01.T01:CDS
ACCAAAGGAGTGTTGGGAAT+AGG 0.450556 7:-87582892 None:intergenic
CAGATCTTTGACACTTCTGT+TGG 0.451786 7:+87583245 MsG0780041174.01.T01:CDS
TAATTGAGCATGTGGGTGTT+GGG 0.455367 7:-87583080 None:intergenic
GTATAGGGGTTGGAGTGATA+AGG 0.457284 7:+87584977 MsG0780041174.01.T01:three_prime_UTR
AGACAACGTAAGACAGGCTT+TGG 0.458074 7:+87583199 MsG0780041174.01.T01:CDS
TGGGTGTTGGGTGTCATGAA+TGG 0.469938 7:-87583068 None:intergenic
GTCGATGCTCGAGGTGAGCT+TGG 0.475623 7:+87583221 MsG0780041174.01.T01:CDS
ATAGTACCTTAGAAATTCTC+AGG 0.476842 7:-87583557 None:intergenic
TTACGTGACCATTAGCTTGA+AGG 0.478261 7:+87583307 MsG0780041174.01.T01:CDS
TTGGGCAACGGTATAGGGGT+TGG 0.479857 7:+87584967 MsG0780041174.01.T01:three_prime_UTR
CAGCTCAACCAAAGGAGTGT+TGG 0.486097 7:-87582899 None:intergenic
TATGAGGTTGGTACTCCCCT+TGG 0.501393 7:+87584838 MsG0780041174.01.T01:three_prime_UTR
CTTCACACTGATTATGAGGT+TGG 0.501784 7:+87584826 MsG0780041174.01.T01:three_prime_UTR
TCCTTAATTGATACAAGTGT+TGG 0.503146 7:+87584898 MsG0780041174.01.T01:three_prime_UTR
ATAATTGAGCATGTGGGTGT+TGG 0.510622 7:-87583081 None:intergenic
AGCTGAGAGATTACTCGGTT+AGG 0.510807 7:+87584783 MsG0780041174.01.T01:three_prime_UTR
CCAAGCTTCTCAAATTGAGA+AGG 0.518775 7:-87584372 None:intergenic
ATATAGCAAGTGCAGATTGA+AGG 0.526037 7:+87582958 MsG0780041174.01.T01:five_prime_UTR
GTGTTGGGTGTCATGAATGG+AGG 0.530393 7:-87583065 None:intergenic
TGTAGTTGAACTGGTGGAGT+TGG 0.530566 7:+87583277 MsG0780041174.01.T01:CDS
ATTTGAGAAGCTTGGATAAG+GGG 0.534463 7:+87584380 MsG0780041174.01.T01:three_prime_UTR
TATGACAGGTGTAGTTGAAC+TGG 0.539229 7:+87583268 MsG0780041174.01.T01:CDS
TATCATTTGATCAAAAGGCT+AGG 0.544344 7:+87584921 MsG0780041174.01.T01:three_prime_UTR
CACAGAAGACAACGTAAGAC+AGG 0.550536 7:+87583193 MsG0780041174.01.T01:CDS
ATCATTTGATCAAAAGGCTA+GGG 0.553771 7:+87584922 MsG0780041174.01.T01:three_prime_UTR
CAAAAGGCTAGGGAGTGATA+AGG 0.553860 7:+87584932 MsG0780041174.01.T01:three_prime_UTR
TGACTTGGTGATTTGGGCAA+CGG 0.561343 7:+87584955 MsG0780041174.01.T01:three_prime_UTR
TGGTAGAGAACTTCTTCCAA+GGG 0.564592 7:-87584854 None:intergenic
TACGTGACCATTAGCTTGAA+GGG 0.566065 7:+87583308 MsG0780041174.01.T01:CDS
CTTGTTGTACTCATGAGAAG+TGG 0.569532 7:-87583104 None:intergenic
GATGAAGCTGAGAGATTACT+CGG 0.571310 7:+87584778 MsG0780041174.01.T01:three_prime_UTR
TGACCATTAGCTTGAAGGGT+CGG 0.573287 7:+87583312 MsG0780041174.01.T01:CDS
AACCTCATAATCAGTGTGAA+GGG 0.575517 7:-87584824 None:intergenic
TTGTCTTCTGTGAGGTCAAG+TGG 0.576356 7:-87583182 None:intergenic
TGTTATCATGGAAACATCAC+AGG 0.578970 7:+87584574 MsG0780041174.01.T01:three_prime_UTR
ATGGTAGAGAACTTCTTCCA+AGG 0.581069 7:-87584855 None:intergenic
TGTTGTGTAGAGTAACTGGT+AGG 0.593892 7:-87583041 None:intergenic
TTCAAGCTAATGGTCACGTA+AGG 0.597217 7:-87583305 None:intergenic
TGATTTGGGCAACGGTATAG+GGG 0.599868 7:+87584963 MsG0780041174.01.T01:three_prime_UTR
CAACCTCATAATCAGTGTGA+AGG 0.599974 7:-87584825 None:intergenic
GATAATTAGCAAGTCTGGCA+AGG 0.601106 7:-87583358 None:intergenic
TAGGGAGTGATAAGGTGACT+TGG 0.608066 7:+87584940 MsG0780041174.01.T01:three_prime_UTR
GTTGAACTGGTGGAGTTGGA+TGG 0.610128 7:+87583281 MsG0780041174.01.T01:CDS
ACCTCATAATCAGTGTGAAG+GGG 0.631211 7:-87584823 None:intergenic
GAGTATGTCTCTATCCCAGA+AGG 0.634643 7:+87582980 MsG0780041174.01.T01:exon
ACACGAAACAGCTCAACCAA+AGG 0.637467 7:-87582907 None:intergenic
CAGGCTTTGGTCGATGCTCG+AGG 0.637657 7:+87583212 MsG0780041174.01.T01:CDS
CACTTCTCATGAGTACAACA+AGG 0.638760 7:+87583105 MsG0780041174.01.T01:CDS
GTCTTACGTTGTCTTCTGTG+AGG 0.639028 7:-87583190 None:intergenic
GACAGGTGTAGTTGAACTGG+TGG 0.640631 7:+87583271 MsG0780041174.01.T01:CDS
CAACAAGGTGTATACTGCGA+AGG 0.641582 7:+87583120 MsG0780041174.01.T01:CDS
TAAGAAGCTTGAAGCATCAG+TGG 0.650396 7:-87584459 None:intergenic
GAAGTGGATAATTGAGCATG+TGG 0.651338 7:-87583088 None:intergenic
GTTGTGTAGAGTAACTGGTA+GGG 0.670609 7:-87583040 None:intergenic
GTGTAGAGTAACTGGTAGGG+TGG 0.682532 7:-87583037 None:intergenic
TCTTCTGTGAGGTCAAGTGG+CGG 0.692555 7:-87583179 None:intergenic
AAGTGGATAATTGAGCATGT+GGG 0.695100 7:-87583087 None:intergenic
GGTAGAGAACTTCTTCCAAG+GGG 0.716092 7:-87584853 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTGTTTTATTTTTTTT+AGG + Chr7:87583605-87583624 MsG0780041174.01.T01:intron 10.0%
!! CAAAAAAAATTAATGCATAT+AGG - Chr7:87583925-87583944 None:intergenic 15.0%
!! TCAAAAAAGAAATCTAAATT+TGG + Chr7:87583834-87583853 MsG0780041174.01.T01:intron 15.0%
!! TTGTGAACATTTAATAAATT+AGG + Chr7:87584664-87584683 MsG0780041174.01.T01:three_prime_UTR 15.0%
!! AATAAATTAGGTGATAGTTT+CGG + Chr7:87584676-87584695 MsG0780041174.01.T01:three_prime_UTR 20.0%
!! ACAGTTAATATTGATACATA+AGG - Chr7:87583758-87583777 None:intergenic 20.0%
!! ATAAAACAAAAACCAAATAG+TGG - Chr7:87583598-87583617 None:intergenic 20.0%
!! ATAAAAGATTATTTGCAGAT+AGG + Chr7:87585015-87585034 MsG0780041174.01.T01:three_prime_UTR 20.0%
!! ATAATATCGAATAGATGTAT+TGG - Chr7:87584116-87584135 None:intergenic 20.0%
!! ATTTAATATGCAAACTCAAA+AGG + Chr7:87584199-87584218 MsG0780041174.01.T01:intron 20.0%
!! TTATGTATCAATATTAACTG+TGG + Chr7:87583757-87583776 MsG0780041174.01.T01:intron 20.0%
!!! AATTGTTTTAATTAGCAGTT+AGG + Chr7:87584244-87584263 MsG0780041174.01.T01:intron 20.0%
!!! ATCTGCAAATAATCTTTTAT+AGG - Chr7:87585015-87585034 None:intergenic 20.0%
!!! CTTGTTTACTTTTTATGTTT+TGG + Chr7:87583480-87583499 MsG0780041174.01.T01:intron 20.0%
!!! GCTTTTAAAAATTACAAAAG+CGG + Chr7:87584033-87584052 MsG0780041174.01.T01:intron 20.0%
!!! TGGTTTTCTTTATTTTCATT+TGG + Chr7:87585093-87585112 MsG0780041174.01.T01:three_prime_UTR 20.0%
!!! TTTATTTTCATTTGGTAGAT+TGG + Chr7:87585101-87585120 MsG0780041174.01.T01:three_prime_UTR 20.0%
! AATTATAGTGCACTTTGTTA+TGG + Chr7:87585073-87585092 MsG0780041174.01.T01:three_prime_UTR 25.0%
! AGAAAATAGACACTGATATA+TGG - Chr7:87584732-87584751 None:intergenic 25.0%
! CATAGAAAACGAAAAACAAT+TGG + Chr7:87583526-87583545 MsG0780041174.01.T01:CDS 25.0%
!!! ACTTTTTATGTTTTGGTTTC+AGG + Chr7:87583487-87583506 MsG0780041174.01.T01:intron 25.0%
AATTTGAGAAGCTTGGATAA+GGG + Chr7:87584379-87584398 MsG0780041174.01.T01:three_prime_UTR 30.0%
ACACAAGTACAAAAAGAAGA+TGG - Chr7:87584877-87584896 None:intergenic 30.0%
ACCAACACTTGTATCAATTA+AGG - Chr7:87584902-87584921 None:intergenic 30.0%
AGGAAACAACAACTCTTAAA+AGG - Chr7:87584288-87584307 None:intergenic 30.0%
ATAGGTTTCTTCTACTTCTT+TGG + Chr7:87585033-87585052 MsG0780041174.01.T01:three_prime_UTR 30.0%
ATAGTACCTTAGAAATTCTC+AGG - Chr7:87583560-87583579 None:intergenic 30.0%
ATCATTTGATCAAAAGGCTA+GGG + Chr7:87584922-87584941 MsG0780041174.01.T01:three_prime_UTR 30.0%
ATCTTTCCTAGATATGAAAC+TGG + Chr7:87584703-87584722 MsG0780041174.01.T01:three_prime_UTR 30.0%
GGATTCAATTCAAAAACACA+GGG + Chr7:87584064-87584083 MsG0780041174.01.T01:intron 30.0%
GTTGGTATCATTTGATCAAA+AGG + Chr7:87584916-87584935 MsG0780041174.01.T01:three_prime_UTR 30.0%
TATCATTTGATCAAAAGGCT+AGG + Chr7:87584921-87584940 MsG0780041174.01.T01:three_prime_UTR 30.0%
TCCTTAATTGATACAAGTGT+TGG + Chr7:87584898-87584917 MsG0780041174.01.T01:three_prime_UTR 30.0%
TGGATTCAATTCAAAAACAC+AGG + Chr7:87584063-87584082 MsG0780041174.01.T01:intron 30.0%
TTTGTTTAGTTGAGTGCTTA+CGG + Chr7:87582845-87582864 MsG0780041174.01.T01:five_prime_UTR 30.0%
! AACTCTTGCTATAGAAATTC+AGG + Chr7:87582934-87582953 MsG0780041174.01.T01:five_prime_UTR 30.0%
! TTTGAGATAATTAGCAAGTC+TGG - Chr7:87583366-87583385 None:intergenic 30.0%
!! GAAGTTTGCTTTTGCATTTT+GGG - Chr7:87583448-87583467 None:intergenic 30.0%
!! TGAAGTTTGCTTTTGCATTT+TGG - Chr7:87583449-87583468 None:intergenic 30.0%
AACCTCATAATCAGTGTGAA+GGG - Chr7:87584827-87584846 None:intergenic 35.0%
AAGACTAGAATGTCTGAATG+AGG + Chr7:87583947-87583966 MsG0780041174.01.T01:intron 35.0%
AAGTGGATAATTGAGCATGT+GGG - Chr7:87583090-87583109 None:intergenic 35.0%
ACTGAAAGAGATGCTGATAA+AGG - Chr7:87583155-87583174 None:intergenic 35.0%
ATATAGCAAGTGCAGATTGA+AGG + Chr7:87582958-87582977 MsG0780041174.01.T01:five_prime_UTR 35.0%
ATTTGAGAAGCTTGGATAAG+GGG + Chr7:87584380-87584399 MsG0780041174.01.T01:three_prime_UTR 35.0%
CAATTTGAGAAGCTTGGATA+AGG + Chr7:87584378-87584397 MsG0780041174.01.T01:three_prime_UTR 35.0%
GATAGTCCTGAGAATTTCTA+AGG + Chr7:87583551-87583570 MsG0780041174.01.T01:CDS 35.0%
TGTTATCATGGAAACATCAC+AGG + Chr7:87584574-87584593 MsG0780041174.01.T01:three_prime_UTR 35.0%
TTGTTTAGTTGAGTGCTTAC+GGG + Chr7:87582846-87582865 MsG0780041174.01.T01:five_prime_UTR 35.0%
! CATCTGAGAGTATGTTATCA+TGG + Chr7:87584562-87584581 MsG0780041174.01.T01:three_prime_UTR 35.0%
! CTAAGGTACTATATTACGCA+CGG + Chr7:87583568-87583587 MsG0780041174.01.T01:intron 35.0%
! TTGGTTTCAGGAGATTTTAG+AGG + Chr7:87583499-87583518 MsG0780041174.01.T01:intron 35.0%
!! AAGGCGTTGAAATGTTAATG+TGG + Chr7:87583975-87583994 MsG0780041174.01.T01:intron 35.0%
!! ATAAGGTGACTTGGTGATTT+GGG + Chr7:87584949-87584968 MsG0780041174.01.T01:three_prime_UTR 35.0%
ACCTCATAATCAGTGTGAAG+GGG - Chr7:87584826-87584845 None:intergenic 40.0%
AGGTTGTTGTGTAGAGTAAC+TGG - Chr7:87583048-87583067 None:intergenic 40.0%
ATAATTGAGCATGTGGGTGT+TGG - Chr7:87583084-87583103 None:intergenic 40.0%
ATGAAAACAACTTTGCCGCT+AGG + Chr7:87584090-87584109 MsG0780041174.01.T01:intron 40.0%
ATGGTAGAGAACTTCTTCCA+AGG - Chr7:87584858-87584877 None:intergenic 40.0%
CAACCTCATAATCAGTGTGA+AGG - Chr7:87584828-87584847 None:intergenic 40.0%
CACTTCTCATGAGTACAACA+AGG + Chr7:87583105-87583124 MsG0780041174.01.T01:CDS 40.0%
CAGATCTTTGACACTTCTGT+TGG + Chr7:87583245-87583264 MsG0780041174.01.T01:CDS 40.0%
CCAAGCTTCTCAAATTGAGA+AGG - Chr7:87584375-87584394 None:intergenic 40.0%
CCTTCTCAATTTGAGAAGCT+TGG + Chr7:87584372-87584391 MsG0780041174.01.T01:three_prime_UTR 40.0%
GAAGTGGATAATTGAGCATG+TGG - Chr7:87583091-87583110 None:intergenic 40.0%
GATAATTAGCAAGTCTGGCA+AGG - Chr7:87583361-87583380 None:intergenic 40.0%
GATGAAGCTGAGAGATTACT+CGG + Chr7:87584778-87584797 MsG0780041174.01.T01:three_prime_UTR 40.0%
GTCACGTCACTAATCAAACT+TGG - Chr7:87584001-87584020 None:intergenic 40.0%
GTTGTGTAGAGTAACTGGTA+GGG - Chr7:87583043-87583062 None:intergenic 40.0%
TAATTGAGCATGTGGGTGTT+GGG - Chr7:87583083-87583102 None:intergenic 40.0%
TATGACAGGTGTAGTTGAAC+TGG + Chr7:87583268-87583287 MsG0780041174.01.T01:CDS 40.0%
TGGTAGAGAACTTCTTCCAA+GGG - Chr7:87584857-87584876 None:intergenic 40.0%
TGGTCACCAGTTTCATATCT+AGG - Chr7:87584712-87584731 None:intergenic 40.0%
TGTTGTGTAGAGTAACTGGT+AGG - Chr7:87583044-87583063 None:intergenic 40.0%
TTCAAGCTAATGGTCACGTA+AGG - Chr7:87583308-87583327 None:intergenic 40.0%
! CTTCACACTGATTATGAGGT+TGG + Chr7:87584826-87584845 MsG0780041174.01.T01:three_prime_UTR 40.0%
! CTTGTTGTACTCATGAGAAG+TGG - Chr7:87583107-87583126 None:intergenic 40.0%
! GAAAAAGCACAAGAGAGAAG+AGG - Chr7:87583406-87583425 None:intergenic 40.0%
! GAATAGATGTATTGGCCTAG+CGG - Chr7:87584108-87584127 None:intergenic 40.0%
! TAAGAAGCTTGAAGCATCAG+TGG - Chr7:87584462-87584481 None:intergenic 40.0%
! TACGTGACCATTAGCTTGAA+GGG + Chr7:87583308-87583327 MsG0780041174.01.T01:CDS 40.0%
! TTACGTGACCATTAGCTTGA+AGG + Chr7:87583307-87583326 MsG0780041174.01.T01:CDS 40.0%
!! GATAAGGTGACTTGGTGATT+TGG + Chr7:87584948-87584967 MsG0780041174.01.T01:three_prime_UTR 40.0%
AAACCGACCCTTCAAGCTAA+TGG - Chr7:87583318-87583337 None:intergenic 45.0%
ACAAGAGAGAAGAGGCTTAC+AGG - Chr7:87583398-87583417 None:intergenic 45.0%
ACACGAAACAGCTCAACCAA+AGG - Chr7:87582910-87582929 None:intergenic 45.0%
AGACAACGTAAGACAGGCTT+TGG + Chr7:87583199-87583218 MsG0780041174.01.T01:CDS 45.0%
AGCTGAGAGATTACTCGGTT+AGG + Chr7:87584783-87584802 MsG0780041174.01.T01:three_prime_UTR 45.0%
ATTACAAAAGCGGCGCAACA+TGG + Chr7:87584043-87584062 MsG0780041174.01.T01:intron 45.0%
CAAAAGGCTAGGGAGTGATA+AGG + Chr7:87584932-87584951 MsG0780041174.01.T01:three_prime_UTR 45.0%
CAACAAGGTGTATACTGCGA+AGG + Chr7:87583120-87583139 MsG0780041174.01.T01:CDS 45.0%
CACACCCTCAAATGCATACA+GGG - Chr7:87583783-87583802 None:intergenic 45.0%
CACAGAAGACAACGTAAGAC+AGG + Chr7:87583193-87583212 MsG0780041174.01.T01:CDS 45.0%
GACACTTCTGTTGGTATGAC+AGG + Chr7:87583254-87583273 MsG0780041174.01.T01:CDS 45.0%
GAGTATGTCTCTATCCCAGA+AGG + Chr7:87582980-87582999 MsG0780041174.01.T01:exon 45.0%
GGTAGAGAACTTCTTCCAAG+GGG - Chr7:87584856-87584875 None:intergenic 45.0%
GTATAGGGGTTGGAGTGATA+AGG + Chr7:87584977-87584996 MsG0780041174.01.T01:three_prime_UTR 45.0%
GTCTTACGTTGTCTTCTGTG+AGG - Chr7:87583193-87583212 None:intergenic 45.0%
TAGGGAGTGATAAGGTGACT+TGG + Chr7:87584940-87584959 MsG0780041174.01.T01:three_prime_UTR 45.0%
TCCTATTCCCAACACTCCTT+TGG + Chr7:87582891-87582910 MsG0780041174.01.T01:five_prime_UTR 45.0%
TGTAGTTGAACTGGTGGAGT+TGG + Chr7:87583277-87583296 MsG0780041174.01.T01:CDS 45.0%
TTGTCTTCTGTGAGGTCAAG+TGG - Chr7:87583185-87583204 None:intergenic 45.0%
! GTGATTTGGGCAACGGTATA+GGG + Chr7:87584962-87584981 MsG0780041174.01.T01:three_prime_UTR 45.0%
! TCCCCTTCACACTGATTATG+AGG + Chr7:87584822-87584841 MsG0780041174.01.T01:three_prime_UTR 45.0%
! TGACCATTAGCTTGAAGGGT+CGG + Chr7:87583312-87583331 MsG0780041174.01.T01:CDS 45.0%
! TGATTTGGGCAACGGTATAG+GGG + Chr7:87584963-87584982 MsG0780041174.01.T01:three_prime_UTR 45.0%
!! ACCAAAGGAGTGTTGGGAAT+AGG - Chr7:87582895-87582914 None:intergenic 45.0%
!! AGCTCAACCAAAGGAGTGTT+GGG - Chr7:87582901-87582920 None:intergenic 45.0%
!! ATGTCTGAATGAGGCGTTGA+AGG + Chr7:87583956-87583975 MsG0780041174.01.T01:intron 45.0%
!! GGAGTGTTGGGAATAGGATA+TGG - Chr7:87582889-87582908 None:intergenic 45.0%
!! TGACTTGGTGATTTGGGCAA+CGG + Chr7:87584955-87584974 MsG0780041174.01.T01:three_prime_UTR 45.0%
!! TTAGCTTGAAGGGTCGGTTT+TGG + Chr7:87583318-87583337 MsG0780041174.01.T01:CDS 45.0%
AACACAGTGACAGTGCCTTC+TGG - Chr7:87582998-87583017 None:intergenic 50.0%
ACACAGTGACAGTGCCTTCT+GGG - Chr7:87582997-87583016 None:intergenic 50.0%
GACAGGTGTAGTTGAACTGG+TGG + Chr7:87583271-87583290 MsG0780041174.01.T01:CDS 50.0%
GCACACCCTCAAATGCATAC+AGG - Chr7:87583784-87583803 None:intergenic 50.0%
GTGGCCCTGTATGCATTTGA+GGG + Chr7:87583776-87583795 MsG0780041174.01.T01:intron 50.0%
GTGTAGAGTAACTGGTAGGG+TGG - Chr7:87583040-87583059 None:intergenic 50.0%
GTTGAACTGGTGGAGTTGGA+TGG + Chr7:87583281-87583300 MsG0780041174.01.T01:CDS 50.0%
TACCAGAGACTGCATAGTCG+AGG - Chr7:87584308-87584327 None:intergenic 50.0%
TCTTCTGTGAGGTCAAGTGG+CGG - Chr7:87583182-87583201 None:intergenic 50.0%
TGTGGCCCTGTATGCATTTG+AGG + Chr7:87583775-87583794 MsG0780041174.01.T01:intron 50.0%
TTCCTCGACTATGCAGTCTC+TGG + Chr7:87584303-87584322 MsG0780041174.01.T01:intron 50.0%
! CAGCTCAACCAAAGGAGTGT+TGG - Chr7:87582902-87582921 None:intergenic 50.0%
! GGTGATTTGGGCAACGGTAT+AGG + Chr7:87584961-87584980 MsG0780041174.01.T01:three_prime_UTR 50.0%
! GTGTTGGGTGTCATGAATGG+AGG - Chr7:87583068-87583087 None:intergenic 50.0%
!! TATGAGGTTGGTACTCCCCT+TGG + Chr7:87584838-87584857 MsG0780041174.01.T01:three_prime_UTR 50.0%
!! TGGGTGTTGGGTGTCATGAA+TGG - Chr7:87583071-87583090 None:intergenic 50.0%
ACGCACGGCTTGCCACTATT+TGG + Chr7:87583583-87583602 MsG0780041174.01.T01:intron 55.0%
TTGGGCAACGGTATAGGGGT+TGG + Chr7:87584967-87584986 MsG0780041174.01.T01:three_prime_UTR 55.0%
GTCGATGCTCGAGGTGAGCT+TGG + Chr7:87583221-87583240 MsG0780041174.01.T01:CDS 60.0%
! CAGGCTTTGGTCGATGCTCG+AGG + Chr7:87583212-87583231 MsG0780041174.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 87582810 87585122 87582810 ID=MsG0780041174.01;Name=MsG0780041174.01
Chr7 mRNA 87582810 87585122 87582810 ID=MsG0780041174.01.T01;Parent=MsG0780041174.01;Name=MsG0780041174.01.T01;_AED=0.45;_eAED=0.45;_QI=174|1|1|1|0.5|0.33|3|805|158
Chr7 exon 87582810 87583397 87582810 ID=MsG0780041174.01.T01:exon:52220;Parent=MsG0780041174.01.T01
Chr7 exon 87583509 87583572 87583509 ID=MsG0780041174.01.T01:exon:52221;Parent=MsG0780041174.01.T01
Chr7 exon 87584319 87585122 87584319 ID=MsG0780041174.01.T01:exon:52222;Parent=MsG0780041174.01.T01
Chr7 five_prime_UTR 87582810 87582983 87582810 ID=MsG0780041174.01.T01:five_prime_utr;Parent=MsG0780041174.01.T01
Chr7 CDS 87582984 87583397 87582984 ID=MsG0780041174.01.T01:cds;Parent=MsG0780041174.01.T01
Chr7 CDS 87583509 87583571 87583509 ID=MsG0780041174.01.T01:cds;Parent=MsG0780041174.01.T01
Chr7 three_prime_UTR 87583572 87583572 87583572 ID=MsG0780041174.01.T01:three_prime_utr;Parent=MsG0780041174.01.T01
Chr7 three_prime_UTR 87584319 87585122 87584319 ID=MsG0780041174.01.T01:three_prime_utr;Parent=MsG0780041174.01.T01
Gene Sequence

>MsG0780041174.01.T01

ATGTCTCTATCCCAGAAGGCACTGTCACTGTGTTGTAGCTCACTTAAACTATGCCACCCTACCAGTTACTCTACACAACAACCTCCATTCATGACACCCAACACCCACATGCTCAATTATCCACTTCTCATGAGTACAACAAGGTGTATACTGCGAAGGAAGTTGAAGCCTTTATCAGCATCTCTTTCAGTTGAACCGCCACTTGACCTCACAGAAGACAACGTAAGACAGGCTTTGGTCGATGCTCGAGGTGAGCTTGGTCAGATCTTTGACACTTCTGTTGGTATGACAGGTGTAGTTGAACTGGTGGAGTTGGATGGACCTTACGTGACCATTAGCTTGAAGGGTCGGTTTTGGCACAAACGTTCAACTGTCCTTGCCAGACTTGCTAATTATCTCAAACAGAGAATTCCTGAGATTTTAGAGGTTGACATAGAAAACGAAAAACAATTGGATGATAGTCCTGAGAATTTCTAA

Protein sequence

>MsG0780041174.01.T01

MSLSQKALSLCCSSLKLCHPTSYSTQQPPFMTPNTHMLNYPLLMSTTRCILRRKLKPLSASLSVEPPLDLTEDNVRQALVDARGELGQIFDTSVGMTGVVELVELDGPYVTISLKGRFWHKRSTVLARLANYLKQRIPEILEVDIENEKQLDDSPENF*