AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023650.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023650.01.T01 MTR_8g098335 89.842 443 34 2 1 441 1 434 0.0 761
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTAACATGGACATTAAT+TGG 0.098262 4:+88088597 None:intergenic
AAGCACATCTGAACCAATTC+TGG 0.268014 4:+88089996 None:intergenic
TGTTGTGCATTATTTGTATC+AGG 0.297508 4:+88088837 None:intergenic
TTTATCCAACTGCCTACTAT+TGG 0.307894 4:+88090272 None:intergenic
ACTATAACCTCTTCTTCTTC+TGG 0.312350 4:+88089226 None:intergenic
AGACCTTATAACATCCTCTT+TGG 0.324442 4:-88088041 MsG0480023650.01.T01:CDS
TGTGGCATGGTTCTTACTAT+TGG 0.324521 4:-88090433 MsG0480023650.01.T01:five_prime_UTR
ATATCCTTTGACTTGTTCAT+TGG 0.329729 4:+88088016 None:intergenic
GAATGATCGGATAGCAGATT+TGG 0.343186 4:-88089183 MsG0480023650.01.T01:CDS
TTCCAAGTCCTGCGAACTGC+TGG 0.360062 4:+88088665 None:intergenic
TACTAACATGGACATTAATT+GGG 0.364399 4:+88088598 None:intergenic
TCACCAAATGTAAAATTTGA+AGG 0.376315 4:+88088774 None:intergenic
TAATCTTCGTGAGGCTCATT+CGG 0.396050 4:-88090310 MsG0480023650.01.T01:CDS
TCCCAGCAGTTCGCAGGACT+TGG 0.403469 4:-88088667 MsG0480023650.01.T01:CDS
AAATGTGAATGGCGAATGTT+TGG 0.414827 4:-88090339 MsG0480023650.01.T01:CDS
CATCTCTATGAAGTGCTTTG+AGG 0.416519 4:+88088436 None:intergenic
TCAAAACTTACATCAACATC+AGG 0.435516 4:+88089952 None:intergenic
CAAGTGAAAGCAGAACAAAA+TGG 0.438289 4:-88088963 MsG0480023650.01.T01:CDS
TTTCACACCTTGGTCCTTCA+CGG 0.447121 4:+88088488 None:intergenic
GATCCAAAGAGGATGTTATA+AGG 0.448481 4:+88088038 None:intergenic
TTGCAACTCATTACTAAAAG+TGG 0.454464 4:+88088356 None:intergenic
TAAGACATGTCATGAGAGTA+AGG 0.458092 4:-88088737 MsG0480023650.01.T01:CDS
GGAAATGGGAAATCCAGAAT+TGG 0.460733 4:-88090009 MsG0480023650.01.T01:CDS
CTCAAAGCACTTCATAGAGA+TGG 0.475720 4:-88088435 MsG0480023650.01.T01:CDS
TCAAAGCACTTCATAGAGAT+GGG 0.495966 4:-88088434 MsG0480023650.01.T01:CDS
GCAGTGCGGGACAACTGATT+CGG 0.510006 4:-88088703 MsG0480023650.01.T01:CDS
AAAATTTCCCAGCAGTTCGC+AGG 0.510618 4:-88088673 MsG0480023650.01.T01:CDS
TCCATTGTGGGATTGTGGCA+TGG 0.511328 4:-88090446 MsG0480023650.01.T01:five_prime_UTR
CACTTTGCTGACACTAGCTC+TGG 0.514081 4:-88088816 MsG0480023650.01.T01:CDS
ATAATGTGCATGCAAATTGT+CGG 0.521272 4:+88088290 None:intergenic
GGAGAAAAGAACAGCAGTGC+GGG 0.535867 4:-88088716 MsG0480023650.01.T01:CDS
GGTTTCCAATAGTAGGCAGT+TGG 0.538036 4:-88090277 MsG0480023650.01.T01:CDS
TCCAAGTCCTGCGAACTGCT+GGG 0.538815 4:+88088666 None:intergenic
ATGTTATAAGGTCTTCAAGA+TGG 0.541014 4:+88088050 None:intergenic
GGCTCATTCGGATGGAAGAT+CGG 0.542039 4:-88090298 MsG0480023650.01.T01:CDS
CTTGTTCATTGGATCCAAAG+AGG 0.545524 4:+88088027 None:intergenic
CTTCGTGAGGCTCATTCGGA+TGG 0.545723 4:-88090306 MsG0480023650.01.T01:CDS
GAGATAAAACTTTCACACCT+TGG 0.547276 4:+88088478 None:intergenic
GGACAGAAGATCTCCTCCTC+TGG 0.548594 4:-88090370 MsG0480023650.01.T01:CDS
GAAGATCGGTTTCCAATAGT+AGG 0.549773 4:-88090284 MsG0480023650.01.T01:CDS
AGTTCGCAGGACTTGGAAGA+TGG 0.556294 4:-88088660 MsG0480023650.01.T01:CDS
GCAAGATCCTAACTCTCTGT+TGG 0.561889 4:-88089015 MsG0480023650.01.T01:CDS
GTATGCTCCAGAAGAAGAAG+AGG 0.572437 4:-88089233 MsG0480023650.01.T01:CDS
TGGAATCTTTAATCTTCGTG+AGG 0.576871 4:-88090319 MsG0480023650.01.T01:CDS
GCAAAATAAATTGACCGTGA+AGG 0.591471 4:-88088502 MsG0480023650.01.T01:CDS
GGATCCAATGAACAAGTCAA+AGG 0.593979 4:-88088020 MsG0480023650.01.T01:CDS
GTGTACGTGTGGAGAATGAT+CGG 0.594868 4:-88089196 MsG0480023650.01.T01:CDS
ACTAACATGGACATTAATTG+GGG 0.615194 4:+88088599 None:intergenic
CAAAACTTACATCAACATCA+GGG 0.632189 4:+88089953 None:intergenic
AAATTGACCGTGAAGGACCA+AGG 0.639782 4:-88088495 MsG0480023650.01.T01:CDS
TAGTTGTAAGAGTGTACGTG+TGG 0.641450 4:-88089207 MsG0480023650.01.T01:CDS
GCACATTATGATATTCCTAG+AGG 0.662018 4:-88088276 MsG0480023650.01.T01:intron
CAAAGCACTTCATAGAGATG+GGG 0.670872 4:-88088433 MsG0480023650.01.T01:CDS
ACCATGCCACAATCCCACAA+TGG 0.689259 4:+88090445 None:intergenic
AGGAGAAAAGAACAGCAGTG+CGG 0.716182 4:-88088717 MsG0480023650.01.T01:CDS
CAGTTGGATAAACACACCAG+TGG 0.724616 4:-88090261 MsG0480023650.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATACTCATCTTAAATT+TGG - Chr4:88088380-88088399 MsG0480023650.01.T01:CDS 15.0%
!! TGTTAATAAATATCTAGAAA+GGG - Chr4:88088739-88088758 MsG0480023650.01.T01:CDS 15.0%
!! AAAAAACTAGTTATATAACG+AGG + Chr4:88090191-88090210 None:intergenic 20.0%
!! CTGTTAATAAATATCTAGAA+AGG - Chr4:88088738-88088757 MsG0480023650.01.T01:CDS 20.0%
!! GTTAATAAATATCTAGAAAG+GGG - Chr4:88088740-88088759 MsG0480023650.01.T01:CDS 20.0%
!! TAAAATGTATTTATGGTTAC+TGG - Chr4:88088288-88088307 MsG0480023650.01.T01:CDS 20.0%
!! TACTAAATCATTCATGTAAT+GGG + Chr4:88089152-88089171 None:intergenic 20.0%
!! TACTATTGTATTATGGTTAA+TGG + Chr4:88088844-88088863 None:intergenic 20.0%
!! TATTGATCAATTCTTTAGTA+TGG - Chr4:88090264-88090283 MsG0480023650.01.T01:CDS 20.0%
!! TGGTAAAAATGTAAAAAAGT+TGG - Chr4:88089797-88089816 MsG0480023650.01.T01:intron 20.0%
!!! AAAATAGTTTTCTTCAATCA+TGG - Chr4:88088046-88088065 MsG0480023650.01.T01:CDS 20.0%
!!! GAATCAAATTTTGATTTTCT+GGG - Chr4:88088348-88088367 MsG0480023650.01.T01:CDS 20.0%
!!! GATTGAAGAAAACTATTTTT+AGG + Chr4:88088045-88088064 None:intergenic 20.0%
!!! TGAATCAAATTTTGATTTTC+TGG - Chr4:88088347-88088366 MsG0480023650.01.T01:CDS 20.0%
!!! TTCTTCTTTTTTAGCTTAAA+AGG - Chr4:88088205-88088224 MsG0480023650.01.T01:intron 20.0%
!!! TTTAAAATGTCATGTATAGT+TGG - Chr4:88089086-88089105 MsG0480023650.01.T01:CDS 20.0%
! AAAAATCAAAGATTTGCATG+TGG - Chr4:88090058-88090077 MsG0480023650.01.T01:intron 25.0%
! AAGGCAATACTATTGTATTA+TGG + Chr4:88088851-88088870 None:intergenic 25.0%
! ACAGCTTCAAATGATATTTA+TGG + Chr4:88088320-88088339 None:intergenic 25.0%
! ACTAAATCATTCATGTAATG+GGG + Chr4:88089151-88089170 None:intergenic 25.0%
! CAATACATAGATGATAAATG+AGG + Chr4:88090249-88090268 None:intergenic 25.0%
! CTACTAAATCATTCATGTAA+TGG + Chr4:88089153-88089172 None:intergenic 25.0%
! TACTAACATGGACATTAATT+GGG + Chr4:88089842-88089861 None:intergenic 25.0%
! TCACCAAATGTAAAATTTGA+AGG + Chr4:88089666-88089685 None:intergenic 25.0%
!! AAGCCTTCAAATTTTACATT+TGG - Chr4:88089660-88089679 MsG0480023650.01.T01:intron 25.0%
!! ATAGCGAAGGTTTAAAATAT+CGG + Chr4:88089008-88089027 None:intergenic 25.0%
!! ATTTTTCTGATTTTCCATTG+TGG - Chr4:88087978-88087997 MsG0480023650.01.T01:CDS 25.0%
!! GAGAGTCTAAAATGTATTTA+TGG - Chr4:88088281-88088300 MsG0480023650.01.T01:CDS 25.0%
!! TTTTTCTGATTTTCCATTGT+GGG - Chr4:88087979-88087998 MsG0480023650.01.T01:CDS 25.0%
!!! AAAACAGTAGTAGTTTTGAT+AGG - Chr4:88089520-88089539 MsG0480023650.01.T01:intron 25.0%
!!! AACTTTTTTCACTACTAACA+TGG + Chr4:88089854-88089873 None:intergenic 25.0%
!!! CGAAACTACTATTTTTTTAG+AGG + Chr4:88089577-88089596 None:intergenic 25.0%
!!! TTTGAAGTTTTTCAAGTTGA+AGG - Chr4:88089872-88089891 MsG0480023650.01.T01:intron 25.0%
!!! TTTTTCAACAAAAACTCTCA+AGG - Chr4:88089312-88089331 MsG0480023650.01.T01:intron 25.0%
AAATGTACTAACAACTCGAA+TGG + Chr4:88088711-88088730 None:intergenic 30.0%
ACAGCATCCAAAAATTGATT+AGG + Chr4:88089360-88089379 None:intergenic 30.0%
ACTAACATGGACATTAATTG+GGG + Chr4:88089841-88089860 None:intergenic 30.0%
ACTACTTCAGTAACTTAGAA+AGG + Chr4:88088796-88088815 None:intergenic 30.0%
ATAATGTGCATGCAAATTGT+CGG + Chr4:88090150-88090169 None:intergenic 30.0%
ATGTTATAAGGTCTTCAAGA+TGG + Chr4:88090390-88090409 None:intergenic 30.0%
ATTCTTTAGTATGGTCTGAA+AGG - Chr4:88090273-88090292 MsG0480023650.01.T01:CDS 30.0%
CAAAACTTACATCAACATCA+GGG + Chr4:88088487-88088506 None:intergenic 30.0%
CTACTAACATGGACATTAAT+TGG + Chr4:88089843-88089862 None:intergenic 30.0%
TCAAAACTTACATCAACATC+AGG + Chr4:88088488-88088507 None:intergenic 30.0%
TGGTTAACCAAAAATGTGAA+TGG - Chr4:88088087-88088106 MsG0480023650.01.T01:CDS 30.0%
TGTTGTGCATTATTTGTATC+AGG + Chr4:88089603-88089622 None:intergenic 30.0%
TTGCAACTCATTACTAAAAG+TGG + Chr4:88090084-88090103 None:intergenic 30.0%
TTTGTAGCAGCTATTGTAAA+AGG - Chr4:88088542-88088561 MsG0480023650.01.T01:CDS 30.0%
! ACTCATCTTAAATTTGGAAC+TGG - Chr4:88088386-88088405 MsG0480023650.01.T01:CDS 30.0%
! AGTAATGAGTTGCAAGTTTT+TGG - Chr4:88090089-88090108 MsG0480023650.01.T01:intron 30.0%
! ATTTAGTAGCATAGCATTGA+TGG - Chr4:88089164-88089183 MsG0480023650.01.T01:CDS 30.0%
! TTGTCAGCCTAATCAATTTT+TGG - Chr4:88089350-88089369 MsG0480023650.01.T01:intron 30.0%
!! ACAGGTTTTATATTCGAACA+AGG - Chr4:88089380-88089399 MsG0480023650.01.T01:intron 30.0%
!! ATATCCTTTGACTTGTTCAT+TGG + Chr4:88090424-88090443 None:intergenic 30.0%
!!! TTAAACCCTTTTTAAAGCCT+CGG - Chr4:88088616-88088635 MsG0480023650.01.T01:CDS 30.0%
AAAAACTCTCAAGGCAAAGA+TGG - Chr4:88089321-88089340 MsG0480023650.01.T01:intron 35.0%
AAAAGAAGAACTCTTACCAC+TGG + Chr4:88088195-88088214 None:intergenic 35.0%
AAATGTGAATGGCGAATGTT+TGG - Chr4:88088098-88088117 MsG0480023650.01.T01:intron 35.0%
AATAGTATTGCCTTGCTTTG+AGG - Chr4:88088857-88088876 MsG0480023650.01.T01:CDS 35.0%
ACTATAACCTCTTCTTCTTC+TGG + Chr4:88089214-88089233 None:intergenic 35.0%
AGACCTTATAACATCCTCTT+TGG - Chr4:88090396-88090415 MsG0480023650.01.T01:five_prime_UTR 35.0%
ATCTCATAAAAAGCAGCAGA+TGG - Chr4:88089977-88089996 MsG0480023650.01.T01:CDS 35.0%
CAAGTGAAAGCAGAACAAAA+TGG - Chr4:88089474-88089493 MsG0480023650.01.T01:intron 35.0%
GAGATAAAACTTTCACACCT+TGG + Chr4:88089962-88089981 None:intergenic 35.0%
GATCCAAAGAGGATGTTATA+AGG + Chr4:88090402-88090421 None:intergenic 35.0%
GCAAAATAAATTGACCGTGA+AGG - Chr4:88089935-88089954 MsG0480023650.01.T01:intron 35.0%
GCACATTATGATATTCCTAG+AGG - Chr4:88090161-88090180 MsG0480023650.01.T01:intron 35.0%
TAAGACATGTCATGAGAGTA+AGG - Chr4:88089700-88089719 MsG0480023650.01.T01:intron 35.0%
TCATACATGCTTGTGATTTC+AGG + Chr4:88088593-88088612 None:intergenic 35.0%
TGGAATCTTTAATCTTCGTG+AGG - Chr4:88088118-88088137 MsG0480023650.01.T01:intron 35.0%
TTTATCCAACTGCCTACTAT+TGG + Chr4:88088168-88088187 None:intergenic 35.0%
! ACATTCGCCATTCACATTTT+TGG + Chr4:88088097-88088116 None:intergenic 35.0%
! GTTTTCTTGCAGAAACAGAT+GGG - Chr4:88090326-88090345 MsG0480023650.01.T01:CDS 35.0%
! TCAAAGCACTTCATAGAGAT+GGG - Chr4:88090003-88090022 MsG0480023650.01.T01:CDS 35.0%
! TGTTTTACCAACAGAGAGTT+AGG + Chr4:88089432-88089451 None:intergenic 35.0%
!! ATGAAACTAGTTGATAGCGA+AGG + Chr4:88089021-88089040 None:intergenic 35.0%
!! TCAATTTTTGGATGCTGTAC+AGG - Chr4:88089362-88089381 MsG0480023650.01.T01:intron 35.0%
!!! TCACATTTTTGGTTAACCAG+AGG + Chr4:88088086-88088105 None:intergenic 35.0%
AAGCACATCTGAACCAATTC+TGG + Chr4:88088444-88088463 None:intergenic 40.0%
ACATAAAACTCGACATGACG+TGG + Chr4:88088917-88088936 None:intergenic 40.0%
AGAAAGGGGAAAGACTTTGA+AGG - Chr4:88088754-88088773 MsG0480023650.01.T01:CDS 40.0%
ATATAACGAGGCATACCTCT+AGG + Chr4:88090179-88090198 None:intergenic 40.0%
ATCACTAGATCCTCAAAGCA+AGG + Chr4:88088870-88088889 None:intergenic 40.0%
ATCGGTCATAGTAACTGTTG+TGG + Chr4:88088990-88089009 None:intergenic 40.0%
CTTGTTCATTGGATCCAAAG+AGG + Chr4:88090413-88090432 None:intergenic 40.0%
GAATGATCGGATAGCAGATT+TGG - Chr4:88089254-88089273 MsG0480023650.01.T01:intron 40.0%
GGAAATGGGAAATCCAGAAT+TGG - Chr4:88088428-88088447 MsG0480023650.01.T01:CDS 40.0%
GGATCCAATGAACAAGTCAA+AGG - Chr4:88090417-88090436 MsG0480023650.01.T01:five_prime_UTR 40.0%
TAATCTTCGTGAGGCTCATT+CGG - Chr4:88088127-88088146 MsG0480023650.01.T01:intron 40.0%
TAGACTCTCAGTGCATACAA+TGG + Chr4:88088270-88088289 None:intergenic 40.0%
TGTGGCATGGTTCTTACTAT+TGG - Chr4:88088004-88088023 MsG0480023650.01.T01:CDS 40.0%
TTGGCAAGATGCAGCAAAAA+TGG - Chr4:88089105-88089124 MsG0480023650.01.T01:CDS 40.0%
! ATCATTCATGTAATGGGGTG+AGG + Chr4:88089146-88089165 None:intergenic 40.0%
! CAAAGCACTTCATAGAGATG+GGG - Chr4:88090004-88090023 MsG0480023650.01.T01:CDS 40.0%
! CATCTCTATGAAGTGCTTTG+AGG + Chr4:88090004-88090023 None:intergenic 40.0%
! CGTTTTCTTGCAGAAACAGA+TGG - Chr4:88090325-88090344 MsG0480023650.01.T01:CDS 40.0%
! CTCAAAGCACTTCATAGAGA+TGG - Chr4:88090002-88090021 MsG0480023650.01.T01:CDS 40.0%
! CTTTGAGGATCTAGTGATCA+AGG - Chr4:88088872-88088891 MsG0480023650.01.T01:CDS 40.0%
! GAACTGCTGGGAAATTTTCT+TGG + Chr4:88089762-88089781 None:intergenic 40.0%
! GAAGATCGGTTTCCAATAGT+AGG - Chr4:88088153-88088172 MsG0480023650.01.T01:intron 40.0%
! GATTTTCCATTGTGGGATTG+TGG - Chr4:88087986-88088005 MsG0480023650.01.T01:CDS 40.0%
! TAGTTGTAAGAGTGTACGTG+TGG - Chr4:88089230-88089249 MsG0480023650.01.T01:CDS 40.0%
! TCATTCATGTAATGGGGTGA+GGG + Chr4:88089145-88089164 None:intergenic 40.0%
! TTTTCCAAGCTGCAGGAAAT+GGG - Chr4:88088414-88088433 MsG0480023650.01.T01:CDS 40.0%
! TTTTTCCAAGCTGCAGGAAA+TGG - Chr4:88088413-88088432 MsG0480023650.01.T01:CDS 40.0%
!! ACTAGTCCGAGGCTTTAAAA+AGG + Chr4:88088625-88088644 None:intergenic 40.0%
!! CTAGTCCGAGGCTTTAAAAA+GGG + Chr4:88088624-88088643 None:intergenic 40.0%
!!! CATTTTTGGTTAACCAGAGG+AGG + Chr4:88088083-88088102 None:intergenic 40.0%
!!! GATGGAAGAATTTTGACTGC+AGG - Chr4:88089182-88089201 MsG0480023650.01.T01:CDS 40.0%
!!! TTTTTAAAGCCTCGGACTAG+TGG - Chr4:88088624-88088643 MsG0480023650.01.T01:CDS 40.0%
AAAATTTCCCAGCAGTTCGC+AGG - Chr4:88089764-88089783 MsG0480023650.01.T01:intron 45.0%
AAATTGACCGTGAAGGACCA+AGG - Chr4:88089942-88089961 MsG0480023650.01.T01:intron 45.0%
AGGAGAAAAGAACAGCAGTG+CGG - Chr4:88089720-88089739 MsG0480023650.01.T01:intron 45.0%
ATTTCCCATTTCCTGCAGCT+TGG + Chr4:88088421-88088440 None:intergenic 45.0%
CAGTTGGATAAACACACCAG+TGG - Chr4:88088176-88088195 MsG0480023650.01.T01:intron 45.0%
GCAAGATCCTAACTCTCTGT+TGG - Chr4:88089422-88089441 MsG0480023650.01.T01:intron 45.0%
GGTTTCCAATAGTAGGCAGT+TGG - Chr4:88088160-88088179 MsG0480023650.01.T01:intron 45.0%
GTATGCTCCAGAAGAAGAAG+AGG - Chr4:88089204-88089223 MsG0480023650.01.T01:CDS 45.0%
GTGTACGTGTGGAGAATGAT+CGG - Chr4:88089241-88089260 MsG0480023650.01.T01:intron 45.0%
TTACCAAAACCACTAGTCCG+AGG + Chr4:88088636-88088655 None:intergenic 45.0%
TTTCACACCTTGGTCCTTCA+CGG + Chr4:88089952-88089971 None:intergenic 45.0%
! CATTCATGTAATGGGGTGAG+GGG + Chr4:88089144-88089163 None:intergenic 45.0%
!!! GGTGATTTTTTCCAAGCTGC+AGG - Chr4:88088407-88088426 MsG0480023650.01.T01:CDS 45.0%
ACCATGCCACAATCCCACAA+TGG + Chr4:88087995-88088014 None:intergenic 50.0%
AGTTCGCAGGACTTGGAAGA+TGG - Chr4:88089777-88089796 MsG0480023650.01.T01:intron 50.0%
CACTTTGCTGACACTAGCTC+TGG - Chr4:88089621-88089640 MsG0480023650.01.T01:intron 50.0%
GGAGAAAAGAACAGCAGTGC+GGG - Chr4:88089721-88089740 MsG0480023650.01.T01:intron 50.0%
GGCTCATTCGGATGGAAGAT+CGG - Chr4:88088139-88088158 MsG0480023650.01.T01:intron 50.0%
TCCATTGTGGGATTGTGGCA+TGG - Chr4:88087991-88088010 MsG0480023650.01.T01:CDS 50.0%
!!! AAGCCTCGGACTAGTGGTTT+TGG - Chr4:88088630-88088649 MsG0480023650.01.T01:CDS 50.0%
ACATGACGTGGACCAAACCG+TGG + Chr4:88088905-88088924 None:intergenic 55.0%
CCTCAATCGTGGTCGTGTTG+CGG + Chr4:88088948-88088967 None:intergenic 55.0%
CTTCGTGAGGCTCATTCGGA+TGG - Chr4:88088131-88088150 MsG0480023650.01.T01:intron 55.0%
GCAGTGCGGGACAACTGATT+CGG - Chr4:88089734-88089753 MsG0480023650.01.T01:intron 55.0%
GGACAGAAGATCTCCTCCTC+TGG - Chr4:88088067-88088086 MsG0480023650.01.T01:CDS 55.0%
GTGATCAAGGTCTGCGACCA+CGG - Chr4:88088885-88088904 MsG0480023650.01.T01:CDS 55.0%
GTGGTCAAATGAGCCCGATG+CGG + Chr4:88088971-88088990 None:intergenic 55.0%
TCCAAGTCCTGCGAACTGCT+GGG + Chr4:88089774-88089793 None:intergenic 55.0%
TTCCAAGTCCTGCGAACTGC+TGG + Chr4:88089775-88089794 None:intergenic 55.0%
! ATGTAATGGGGTGAGGGGAG+TGG + Chr4:88089139-88089158 None:intergenic 55.0%
ACCACGATTGAGGCCGCATC+GGG - Chr4:88088955-88088974 MsG0480023650.01.T01:CDS 60.0%
CAAGGTCTGCGACCACGGTT+TGG - Chr4:88088890-88088909 MsG0480023650.01.T01:CDS 60.0%
CCGCAACACGACCACGATTG+AGG - Chr4:88088945-88088964 MsG0480023650.01.T01:CDS 60.0%
GACCACGATTGAGGCCGCAT+CGG - Chr4:88088954-88088973 MsG0480023650.01.T01:CDS 60.0%
TCCCAGCAGTTCGCAGGACT+TGG - Chr4:88089770-88089789 MsG0480023650.01.T01:intron 60.0%
GCCCGATGCGGCCTCAATCG+TGG + Chr4:88088959-88088978 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 88087967 88090492 88087967 ID=MsG0480023650.01;Name=MsG0480023650.01
Chr4 mRNA 88087967 88090492 88087967 ID=MsG0480023650.01.T01;Parent=MsG0480023650.01;Name=MsG0480023650.01.T01;_AED=0.50;_eAED=0.50;_QI=98|0.66|0.75|1|1|1|4|0|442
Chr4 exon 88087967 88088115 88087967 ID=MsG0480023650.01.T01:exon:6454;Parent=MsG0480023650.01.T01
Chr4 exon 88088277 88089255 88088277 ID=MsG0480023650.01.T01:exon:6453;Parent=MsG0480023650.01.T01
Chr4 exon 88089963 88090030 88089963 ID=MsG0480023650.01.T01:exon:6452;Parent=MsG0480023650.01.T01
Chr4 exon 88090262 88090492 88090262 ID=MsG0480023650.01.T01:exon:6451;Parent=MsG0480023650.01.T01
Chr4 five_prime_UTR 88090395 88090492 88090395 ID=MsG0480023650.01.T01:five_prime_utr;Parent=MsG0480023650.01.T01
Chr4 CDS 88090262 88090394 88090262 ID=MsG0480023650.01.T01:cds;Parent=MsG0480023650.01.T01
Chr4 CDS 88089963 88090030 88089963 ID=MsG0480023650.01.T01:cds;Parent=MsG0480023650.01.T01
Chr4 CDS 88088277 88089255 88088277 ID=MsG0480023650.01.T01:cds;Parent=MsG0480023650.01.T01
Chr4 CDS 88087967 88088115 88087967 ID=MsG0480023650.01.T01:cds;Parent=MsG0480023650.01.T01
Gene Sequence

>MsG0480023650.01.T01

ATGGACAGAAGATCTCCTCCTCTGGTTAACCAAAAATGTGAATGGCGAATGTTTGGAATCTTTAATCTTCGTGAGGCTCATTCGGATGGAAGATCGGTTTCCAATAGTAGGCAGTTGGATAAACACACCAGTGGAAATGGGAAATCCAGAATTGGTTCAGATGTGCTTAGCGCAGTTGATGAAAAGTACCCTGATGTTGATGTATGCTCCAGAAGAAGAAGAGGTTATAGTTGTAAGAGTGTACGTGTGGAGAATGATCGGATAGCAGATTTGGAAAATGAAGTAACAAAAATGATTGTTAATCAGAGATTTTTCAACAAAAACTCTCAAGGCAAAGATGGTGCAGATTGTCAGCCTAATCAATTTTTGGATGCTGTACAGGTTTTATATTCGAACAAGGAACTTTTCACAAAACTTCTGCAAGATCCTAACTCTCTGTTGGTAAAACAGATTCATGACATACAGAAAACTCAAGTGAAAGCAGAACAAAATGGAGTAATAAGATTGAATAAAGCTCAAAACAGTAGTAGTTTTGATAGGTTTAATTCGAGTTCAAATTGTGAGTCTCAGTCCTCTAAAAAAATAGTAGTTTCGAAGCCTGATACAAATAATGCACAACACTTTGCTGACACTAGCTCTGGCAATGCTCAAAATATTAAGCCTTCAAATTTTACATTTGGTGAAATAAAGAGAAAGTTAAGACATGTCATGAGAGTAAGGAGAAAAGAACAGCAGTGCGGGACAACTGATTCGGCGCCAAGAAAATTTCCCAGCAGTTCGCAGGACTTGGAAGATGGTAAAAATGTAAAAAAGTTGGACACTTCTGAAAGAAATTCCCCAATTAATGTCCATGTTAGTAGTGAAAAAAGTTTGAAGTTTTTCAAGTTGAAGGATTCTGAGTCAACTATGAGACAAGAAGAAGTTGCTTCTGAGCAAAATAAATTGACCGTGAAGGACCAAGGTGTGAAAGTTTTATCTCATAAAAAGCAGCAGATGGTCCTCAAAGCACTTCATAGAGATGGGGAAAGTTGCTCTTATAGTAGTTCTTCAGCTCAAAAAATCAAAGATTTGCATGTGGCCACTTTTAGTAATGAGTTGCAAGTTTTTGGTGCTGCAGATATTAGTGTCAATAAGAGTCTTTCTGCCGACAATTTGCATGCACATTATGATATTCCTAGAGATGGGTCACTAGTACAAGTTGATTACGATAGATTTGAAGAGAACCATCTTGAAGACCTTATAACATCCTCTTTGGATCCAATGAACAAGTCAAAGGATATCATAAGTGAAGTTCTGCAGACTTTCAGCTTGAAATGTGATGACCTATGA

Protein sequence

>MsG0480023650.01.T01

MDRRSPPLVNQKCEWRMFGIFNLREAHSDGRSVSNSRQLDKHTSGNGKSRIGSDVLSAVDEKYPDVDVCSRRRRGYSCKSVRVENDRIADLENEVTKMIVNQRFFNKNSQGKDGADCQPNQFLDAVQVLYSNKELFTKLLQDPNSLLVKQIHDIQKTQVKAEQNGVIRLNKAQNSSSFDRFNSSSNCESQSSKKIVVSKPDTNNAQHFADTSSGNAQNIKPSNFTFGEIKRKLRHVMRVRRKEQQCGTTDSAPRKFPSSSQDLEDGKNVKKLDTSERNSPINVHVSSEKSLKFFKLKDSESTMRQEEVASEQNKLTVKDQGVKVLSHKKQQMVLKALHRDGESCSYSSSSAQKIKDLHVATFSNELQVFGAADISVNKSLSADNLHAHYDIPRDGSLVQVDYDRFEENHLEDLITSSLDPMNKSKDIISEVLQTFSLKCDDL*