AlfalfaGEDB | MsG0480023650.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023650.01

KEGG: -
GO: -
PFAM: PF12552

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023650.01.T01	XP_024627861.1	90.293	443	34	2	1	441	1	436	0	768

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0480023650.01	0.807751	4.337535e-50	2.435696e-47
MsG0080047945.01	MsG0480023650.01	0.814004	1.921376e-51	1.274137e-48
MsG0080047955.01	MsG0480023650.01	0.856390	3.323403e-62	7.920147e-59
MsG0080047956.01	MsG0480023650.01	0.843524	1.328982e-58	2.084947e-55
MsG0080048068.01	MsG0480023650.01	0.804546	2.051417e-49	1.060620e-46
MsG0080048528.01	MsG0480023650.01	0.829401	5.255038e-55	5.372864e-52
MsG0080048727.01	MsG0480023650.01	0.825367	4.871872e-54	4.431536e-51
MsG0080048773.01	MsG0480023650.01	0.843096	1.728793e-58	2.675514e-55
MsG0080048777.01	MsG0480023650.01	0.826815	2.205694e-54	2.090961e-51
MsG0080048780.01	MsG0480023650.01	0.865972	4.007139e-65	1.328633e-61

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023650.01.T01	MTR_8g098335	89.842	443	34	2	1	441	1	434	0.0	761

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 56 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCCCAGCAGTTCGC+AGG	0.510618	4:-88088673	MsG0480023650.01.T01:CDS
AAATGTGAATGGCGAATGTT+TGG	0.414827	4:-88090339	MsG0480023650.01.T01:CDS
AAATTGACCGTGAAGGACCA+AGG	0.639782	4:-88088495	MsG0480023650.01.T01:CDS
AAGCACATCTGAACCAATTC+TGG	0.268014	4:+88089996	None:intergenic
ACCATGCCACAATCCCACAA+TGG	0.689259	4:+88090445	None:intergenic
ACTAACATGGACATTAATTG+GGG	0.615194	4:+88088599	None:intergenic
ACTATAACCTCTTCTTCTTC+TGG	0.312350	4:+88089226	None:intergenic
AGACCTTATAACATCCTCTT+TGG	0.324442	4:-88088041	MsG0480023650.01.T01:CDS
AGGAGAAAAGAACAGCAGTG+CGG	0.716182	4:-88088717	MsG0480023650.01.T01:CDS
AGTTCGCAGGACTTGGAAGA+TGG	0.556294	4:-88088660	MsG0480023650.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTACTAACAACTCGAA+TGG	+	Chr4:88088711-88088730	None:intergenic	30.0%
ACAGCATCCAAAAATTGATT+AGG	+	Chr4:88089360-88089379	None:intergenic	30.0%
ACTAACATGGACATTAATTG+GGG	+	Chr4:88089841-88089860	None:intergenic	30.0%
ACTACTTCAGTAACTTAGAA+AGG	+	Chr4:88088796-88088815	None:intergenic	30.0%
ATAATGTGCATGCAAATTGT+CGG	+	Chr4:88090150-88090169	None:intergenic	30.0%
ATGTTATAAGGTCTTCAAGA+TGG	+	Chr4:88090390-88090409	None:intergenic	30.0%
ATTCTTTAGTATGGTCTGAA+AGG	-	Chr4:88090273-88090292	MsG0480023650.01.T01:CDS	30.0%
CAAAACTTACATCAACATCA+GGG	+	Chr4:88088487-88088506	None:intergenic	30.0%
CTACTAACATGGACATTAAT+TGG	+	Chr4:88089843-88089862	None:intergenic	30.0%
TCAAAACTTACATCAACATC+AGG	+	Chr4:88088488-88088507	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	88087967	88090492	88087967	ID=MsG0480023650.01;Name=MsG0480023650.01
Chr4	mRNA	88087967	88090492	88087967	ID=MsG0480023650.01.T01;Parent=MsG0480023650.01;Name=MsG0480023650.01.T01;_AED=0.50;_eAED=0.50;_QI=98\|0.66\|0.75\|1\|1\|1\|4\|0\|442
Chr4	exon	88087967	88088115	88087967	ID=MsG0480023650.01.T01:exon:6454;Parent=MsG0480023650.01.T01
Chr4	exon	88088277	88089255	88088277	ID=MsG0480023650.01.T01:exon:6453;Parent=MsG0480023650.01.T01
Chr4	exon	88089963	88090030	88089963	ID=MsG0480023650.01.T01:exon:6452;Parent=MsG0480023650.01.T01
Chr4	exon	88090262	88090492	88090262	ID=MsG0480023650.01.T01:exon:6451;Parent=MsG0480023650.01.T01
Chr4	five_prime_UTR	88090395	88090492	88090395	ID=MsG0480023650.01.T01:five_prime_utr;Parent=MsG0480023650.01.T01
Chr4	CDS	88090262	88090394	88090262	ID=MsG0480023650.01.T01:cds;Parent=MsG0480023650.01.T01
Chr4	CDS	88089963	88090030	88089963	ID=MsG0480023650.01.T01:cds;Parent=MsG0480023650.01.T01
Chr4	CDS	88088277	88089255	88088277	ID=MsG0480023650.01.T01:cds;Parent=MsG0480023650.01.T01
Chr4	CDS	88087967	88088115	88087967	ID=MsG0480023650.01.T01:cds;Parent=MsG0480023650.01.T01

Gene Sequence

>MsG0480023650.01.T01

ATGGACAGAAGATCTCCTCCTCTGGTTAACCAAAAATGTGAATGGCGAATGTTTGGAATCTTTAATCTTCGTGAGGCTCATTCGGATGGAAGATCGGTTTCCAATAGTAGGCAGTTGGATAAACACACCAGTGGAAATGGGAAATCCAGAATTGGTTCAGATGTGCTTAGCGCAGTTGATGAAAAGTACCCTGATGTTGATGTATGCTCCAGAAGAAGAAGAGGTTATAGTTGTAAGAGTGTACGTGTGGAGAATGATCGGATAGCAGATTTGGAAAATGAAGTAACAAAAATGATTGTTAATCAGAGATTTTTCAACAAAAACTCTCAAGGCAAAGATGGTGCAGATTGTCAGCCTAATCAATTTTTGGATGCTGTACAGGTTTTATATTCGAACAAGGAACTTTTCACAAAACTTCTGCAAGATCCTAACTCTCTGTTGGTAAAACAGATTCATGACATACAGAAAACTCAAGTGAAAGCAGAACAAAATGGAGTAATAAGATTGAATAAAGCTCAAAACAGTAGTAGTTTTGATAGGTTTAATTCGAGTTCAAATTGTGAGTCTCAGTCCTCTAAAAAAATAGTAGTTTCGAAGCCTGATACAAATAATGCACAACACTTTGCTGACACTAGCTCTGGCAATGCTCAAAATATTAAGCCTTCAAATTTTACATTTGGTGAAATAAAGAGAAAGTTAAGACATGTCATGAGAGTAAGGAGAAAAGAACAGCAGTGCGGGACAACTGATTCGGCGCCAAGAAAATTTCCCAGCAGTTCGCAGGACTTGGAAGATGGTAAAAATGTAAAAAAGTTGGACACTTCTGAAAGAAATTCCCCAATTAATGTCCATGTTAGTAGTGAAAAAAGTTTGAAGTTTTTCAAGTTGAAGGATTCTGAGTCAACTATGAGACAAGAAGAAGTTGCTTCTGAGCAAAATAAATTGACCGTGAAGGACCAAGGTGTGAAAGTTTTATCTCATAAAAAGCAGCAGATGGTCCTCAAAGCACTTCATAGAGATGGGGAAAGTTGCTCTTATAGTAGTTCTTCAGCTCAAAAAATCAAAGATTTGCATGTGGCCACTTTTAGTAATGAGTTGCAAGTTTTTGGTGCTGCAGATATTAGTGTCAATAAGAGTCTTTCTGCCGACAATTTGCATGCACATTATGATATTCCTAGAGATGGGTCACTAGTACAAGTTGATTACGATAGATTTGAAGAGAACCATCTTGAAGACCTTATAACATCCTCTTTGGATCCAATGAACAAGTCAAAGGATATCATAAGTGAAGTTCTGCAGACTTTCAGCTTGAAATGTGATGACCTATGA

Protein sequence

>MsG0480023650.01.T01

MDRRSPPLVNQKCEWRMFGIFNLREAHSDGRSVSNSRQLDKHTSGNGKSRIGSDVLSAVDEKYPDVDVCSRRRRGYSCKSVRVENDRIADLENEVTKMIVNQRFFNKNSQGKDGADCQPNQFLDAVQVLYSNKELFTKLLQDPNSLLVKQIHDIQKTQVKAEQNGVIRLNKAQNSSSFDRFNSSSNCESQSSKKIVVSKPDTNNAQHFADTSSGNAQNIKPSNFTFGEIKRKLRHVMRVRRKEQQCGTTDSAPRKFPSSSQDLEDGKNVKKLDTSERNSPINVHVSSEKSLKFFKLKDSESTMRQEEVASEQNKLTVKDQGVKVLSHKKQQMVLKALHRDGESCSYSSSSAQKIKDLHVATFSNELQVFGAADISVNKSLSADNLHAHYDIPRDGSLVQVDYDRFEENHLEDLITSSLDPMNKSKDIISEVLQTFSLKCDDL*