AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049004.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049004.01.T01 MTR_2g020160 98.058 412 7 1 1 411 1 412 0.0 820
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049004.01.T01 AT5G18660 71.327 422 100 5 1 408 1 415 0.0 600

Find 103 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTATAAGTTTACAATTAT+TGG 0.034668 contig602end:+11632 MsG0080049004.01.T01:intergenic
GCCAAATCTTGTTCACTTAT+AGG 0.199757 contig602end:+10565 MsG0080049004.01.T01:intergenic
ACCAAGACATTAACATCTTT+TGG 0.207193 contig602end:+11150 MsG0080049004.01.T01:intergenic
GAAAGTTCCAATAGGGATTA+TGG 0.213230 contig602end:-10404 MsG0080049004.01.T01:CDS
CATTTATACATAAACAAAAT+TGG 0.229435 contig602end:+10088 MsG0080049004.01.T01:intergenic
TTTCTCTGATGTGACAAATT+TGG 0.231196 contig602end:-10974 MsG0080049004.01.T01:CDS
GCAATAAGCAATTTATTAAT+AGG 0.240180 contig602end:+10004 MsG0080049004.01.T01:intergenic
TAGAGAAAAGAGTGGAATAA+AGG 0.258502 contig602end:-11049 MsG0080049004.01.T01:CDS
GGCTGAAAGTATGTTGATTT+TGG 0.261140 contig602end:-10290 MsG0080049004.01.T01:CDS
TATTGGTGTTCTTGACAATT+TGG 0.267908 contig602end:-10374 MsG0080049004.01.T01:CDS
GTCTTGGTAGTAGGTTCAAC+TGG 0.297195 contig602end:-11135 MsG0080049004.01.T01:CDS
TCGCTGTACTCGCCAGTATC+AGG 0.304596 contig602end:+10265 MsG0080049004.01.T01:intergenic
ACCTATAAGTGAACAAGATT+TGG 0.307663 contig602end:-10566 MsG0080049004.01.T01:CDS
TTGGAAGATGCTGCTGAGTT+TGG 0.326591 contig602end:-10334 MsG0080049004.01.T01:CDS
ACAACATTGAATGAGTTAAA+AGG 0.336207 contig602end:-11009 MsG0080049004.01.T01:CDS
TTCTTGCTTCTAAATGTTGA+TGG 0.349443 contig602end:+11174 MsG0080049004.01.T01:intergenic
GCAAAATCCATAATCCCTAT+TGG 0.356770 contig602end:+10397 MsG0080049004.01.T01:intergenic
TTTAGGTGGTCAAGTTGATT+TGG 0.358962 contig602end:-10644 MsG0080049004.01.T01:CDS
GAGGGTTTGGTGTTTGAGTG+AGG 0.371768 contig602end:+11335 MsG0080049004.01.T01:intergenic
ATGGAGGGGTTAAGGATTCA+TGG 0.373729 contig602end:-10879 MsG0080049004.01.T01:CDS
GGTTAAGGTATTTCCTTCAT+TGG 0.375273 contig602end:-10353 MsG0080049004.01.T01:CDS
TAGTAGAAATGGAGGGGTTA+AGG 0.375942 contig602end:-10887 MsG0080049004.01.T01:CDS
TATTGGAACTTTCAAGAACT+TGG 0.381093 contig602end:+10414 MsG0080049004.01.T01:intergenic
AGAAATTGAAGGAGAGGGTT+TGG 0.390580 contig602end:+11322 MsG0080049004.01.T01:intergenic
TGTTCTTGACAATTTGGTTA+AGG 0.399383 contig602end:-10368 MsG0080049004.01.T01:CDS
AGGGTTTGGTGTTTGAGTGA+GGG 0.399831 contig602end:+11336 MsG0080049004.01.T01:intergenic
TTGTGATTGAAAGGAAATAA+TGG 0.401785 contig602end:+11440 MsG0080049004.01.T01:intergenic
GTGTGTAAGAGAAATCTAAA+TGG 0.403912 contig602end:+11510 MsG0080049004.01.T01:intergenic
ACAATTATTGGAAAATTCAA+TGG 0.405950 contig602end:+11644 MsG0080049004.01.T01:intergenic
AGTTCTTGAAAGTTCCAATA+GGG 0.406884 contig602end:-10411 MsG0080049004.01.T01:CDS
TCTTGTCTTGCTAGTAGAAA+TGG 0.408504 contig602end:-10898 MsG0080049004.01.T01:CDS
AGAGAAAAGAGTGGAATAAA+GGG 0.408945 contig602end:-11048 MsG0080049004.01.T01:CDS
GTAGGTTCAACTGGGTATAT+AGG 0.410679 contig602end:-11126 MsG0080049004.01.T01:CDS
TCTTGCTTCTAAATGTTGAT+GGG 0.421309 contig602end:+11175 MsG0080049004.01.T01:intergenic
TCACTTCATCAACCTATTCA+AGG 0.430086 contig602end:-11283 MsG0080049004.01.T01:CDS
AAGTTCTTGAAAGTTCCAAT+AGG 0.431475 contig602end:-10412 MsG0080049004.01.T01:CDS
AATAAATTGCTTATTGCTAC+CGG 0.432814 contig602end:-9998 None:intergenic
GTGAAAGAGTTGATTCAAAG+AGG 0.433123 contig602end:-11093 MsG0080049004.01.T01:CDS
CAACTTGTTCAGATTGTGAA+AGG 0.441779 contig602end:+11205 MsG0080049004.01.T01:intergenic
TCCAAAAGATGTTAATGTCT+TGG 0.443326 contig602end:-11151 MsG0080049004.01.T01:CDS
GATGTTAATGTCTTGGTAGT+AGG 0.450407 contig602end:-11144 MsG0080049004.01.T01:CDS
GGGTTTGGTGTTTGAGTGAG+GGG 0.452202 contig602end:+11337 MsG0080049004.01.T01:intergenic
CAAGTTGATTTGGTGAAAGA+TGG 0.452904 contig602end:-10634 MsG0080049004.01.T01:CDS
GTGCTCAGGGAAGGGATGGC+TGG 0.454004 contig602end:-10190 MsG0080049004.01.T01:CDS
AAAATTTCCCCTTGTTCCAA+TGG 0.458224 contig602end:+10460 MsG0080049004.01.T01:intergenic
AATGGAGTCAATGCCTTCCC+TGG 0.459081 contig602end:+10478 MsG0080049004.01.T01:intergenic
GCCTTCCCTGGTCCTCCAAT+AGG 0.460882 contig602end:+10490 MsG0080049004.01.T01:intergenic
CCATCACCAAACATCACATA+AGG 0.461120 contig602end:+10607 MsG0080049004.01.T01:intergenic
TTTGCTAGGGTGCTCAGGGA+AGG 0.472138 contig602end:-10199 MsG0080049004.01.T01:CDS
GTGAAGAGAAATTGAAGGAG+AGG 0.474439 contig602end:+11316 MsG0080049004.01.T01:intergenic
AGGTTGATGAAGTGAGAAGG+AGG 0.475446 contig602end:+11291 MsG0080049004.01.T01:intergenic
TTGCTAGGGTGCTCAGGGAA+GGG 0.475808 contig602end:-10198 MsG0080049004.01.T01:CDS
GGATGAGTTGGTAAAGGAAG+CGG 0.485061 contig602end:-10722 MsG0080049004.01.T01:CDS
GGGAAGCCTTATGTGATGTT+TGG 0.486837 contig602end:-10613 MsG0080049004.01.T01:CDS
TGAAAGAGTTGATTCAAAGA+GGG 0.488936 contig602end:-11092 MsG0080049004.01.T01:CDS
GATGAGAAGACGCCGAGCTA+TGG 0.490154 contig602end:-10244 MsG0080049004.01.T01:CDS
AGGAAGCGGAGAAAGATGAT+AGG 0.500448 contig602end:-10708 MsG0080049004.01.T01:CDS
TAGGGTGCTCAGGGAAGGGA+TGG 0.504745 contig602end:-10194 MsG0080049004.01.T01:CDS
AAGTTGATTTGGTGAAAGAT+GGG 0.505222 contig602end:-10633 MsG0080049004.01.T01:CDS
ATGAGAAGACGCCGAGCTAT+GGG 0.509494 contig602end:-10243 MsG0080049004.01.T01:CDS
AGGGAAGGCATTGACTCCAT+TGG 0.512516 contig602end:-10476 MsG0080049004.01.T01:CDS
AACTTGTTCAGATTGTGAAA+GGG 0.521535 contig602end:+11206 MsG0080049004.01.T01:intergenic
GCTTGAGGATGAGTTGGTAA+AGG 0.525596 contig602end:-10728 MsG0080049004.01.T01:CDS
ATTGGAACTTTCAAGAACTT+GGG 0.529491 contig602end:+10415 MsG0080049004.01.T01:intergenic
TCAGCAGCATCTTCCAATGA+AGG 0.532717 contig602end:+10340 MsG0080049004.01.T01:intergenic
TGAGGGGTGTGTGATGAAAG+TGG 0.534640 contig602end:+11353 MsG0080049004.01.T01:intergenic
CTTGCTTCTAAATGTTGATG+GGG 0.544812 contig602end:+11176 MsG0080049004.01.T01:intergenic
AGGGTGTGAAGAGAAATTGA+AGG 0.545623 contig602end:+11311 MsG0080049004.01.T01:intergenic
AATAGGTTGATGAAGTGAGA+AGG 0.547274 contig602end:+11288 MsG0080049004.01.T01:intergenic
TGAAGAGAAATTGAAGGAGA+GGG 0.547534 contig602end:+11317 MsG0080049004.01.T01:intergenic
GCACGCTGAAACTCGAGAAG+AGG 0.548329 contig602end:+10760 MsG0080049004.01.T01:intergenic
GGGATGGCTGGTCAAGAGCT+AGG 0.549334 contig602end:-10178 MsG0080049004.01.T01:CDS
ACCTATTGGAGGACCAGGGA+AGG 0.552480 contig602end:-10491 MsG0080049004.01.T01:CDS
GCGTGCGAAGCTGAAGCTTG+AGG 0.553193 contig602end:-10743 MsG0080049004.01.T01:CDS
GCTGAAGCTTGAGGATGAGT+TGG 0.553213 contig602end:-10734 MsG0080049004.01.T01:CDS
AACGTATCATTCCCATAGCT+CGG 0.554956 contig602end:+10232 MsG0080049004.01.T01:intergenic
GATTTGAAGAACCTAGGTGT+TGG 0.562927 contig602end:-10937 MsG0080049004.01.T01:CDS
CCTTATGTGATGTTTGGTGA+TGG 0.564492 contig602end:-10607 MsG0080049004.01.T01:CDS
GGTTGATGAAGTGAGAAGGA+GGG 0.571070 contig602end:+11292 MsG0080049004.01.T01:intergenic
GCATTGACTCCATTGGAACA+AGG 0.574091 contig602end:-10469 MsG0080049004.01.T01:CDS
GGATTGTGTTTGTGATTGAA+AGG 0.574426 contig602end:+11431 MsG0080049004.01.T01:intergenic
TTAAGAAATTGTGAATGCAG+AGG 0.577184 contig602end:+11410 MsG0080049004.01.T01:intergenic
GATGAGGATTTGAAGAACCT+AGG 0.591299 contig602end:-10943 MsG0080049004.01.T01:CDS
TGGTGGTGATGAGAATACGT+GGG 0.592861 contig602end:+11534 MsG0080049004.01.T01:intergenic
TCTTGCTAGTAGAAATGGAG+GGG 0.600302 contig602end:-10893 MsG0080049004.01.T01:CDS
CATTGACTCCATTGGAACAA+GGG 0.600349 contig602end:-10468 MsG0080049004.01.T01:CDS
AATCACACAACATAGTGAAG+AGG 0.603441 contig602end:-11574 MsG0080049004.01.T01:exon
ATTTATTAATAGGTGAATCG+TGG 0.606516 contig602end:+10014 MsG0080049004.01.T01:intergenic
GAGCTATGGGAATGATACGT+TGG 0.608370 contig602end:-10230 MsG0080049004.01.T01:CDS
TGTTGATTGTGTAATGAGTG+AGG 0.616265 contig602end:-10533 MsG0080049004.01.T01:CDS
ATTGACTCCATTGGAACAAG+GGG 0.618767 contig602end:-10467 MsG0080049004.01.T01:CDS
GTCTTGCTAGTAGAAATGGA+GGG 0.622888 contig602end:-10894 MsG0080049004.01.T01:CDS
TGTCTTGCTAGTAGAAATGG+AGG 0.623450 contig602end:-10895 MsG0080049004.01.T01:CDS
GGTTTAGTTATAGTATAGTG+AGG 0.643964 contig602end:-10687 MsG0080049004.01.T01:CDS
GCAATAGCTAGAGAAAAGAG+TGG 0.645121 contig602end:-11057 MsG0080049004.01.T01:CDS
TGAAAGTGGAAGAATAACAC+AGG 0.652551 contig602end:+11367 MsG0080049004.01.T01:intergenic
GTAAGAGAAATCTAAATGGA+TGG 0.654429 contig602end:+11514 MsG0080049004.01.T01:intergenic
GGTGGTGATGAGAATACGTG+GGG 0.663672 contig602end:+11535 MsG0080049004.01.T01:intergenic
CAACATCAAAACCAACACCT+AGG 0.664857 contig602end:+10926 MsG0080049004.01.T01:intergenic
AGAGAAATCTAAATGGATGG+TGG 0.665809 contig602end:+11517 MsG0080049004.01.T01:intergenic
ATGGTGGTGATGAGAATACG+TGG 0.673640 contig602end:+11533 MsG0080049004.01.T01:intergenic
TCTTGGTAGTAGGTTCAACT+GGG 0.681666 contig602end:-11134 MsG0080049004.01.T01:CDS
GAAAGTGGAAGAATAACACA+GGG 0.724228 contig602end:+11368 MsG0080049003.01.T01:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAAAAATAGAAGTAAT+TGG + contig602end:10098-10117 MsG0080049004.01.T01:intergenic 10.0%
!!! AATTACTTCTATTTTTTAAA+TGG - contig602end:10097-10116 MsG0080049004.01.T01:exon 10.0%
!! CATTTATACATAAACAAAAT+TGG + contig602end:11615-11634 MsG0080049004.01.T01:intergenic 15.0%
!!! AAATTTTGTTTAAGCTTTTA+GGG - contig602end:11256-11275 MsG0080049004.01.T01:CDS 15.0%
!!! AATATTTTAAGATGGTTTTA+TGG - contig602end:11554-11573 MsG0080049004.01.T01:exon 15.0%
!!! TTTTGTTTGTTATACTTAAT+GGG + contig602end:10457-10476 MsG0080049004.01.T01:intergenic 15.0%
!!! TTTTTGTTTGTTATACTTAA+TGG + contig602end:10458-10477 MsG0080049004.01.T01:intergenic 15.0%
!! ACAATTATTGGAAAATTCAA+TGG + contig602end:10059-10078 MsG0080049004.01.T01:intergenic 20.0%
!! CACTATAAGTTTACAATTAT+TGG + contig602end:10071-10090 MsG0080049004.01.T01:intergenic 20.0%
!! GCAATAAGCAATTTATTAAT+AGG + contig602end:11699-11718 MsG0080049004.01.T01:intergenic 20.0%
!!! ATTAACAAGATTTTACCTAT+TGG - contig602end:11195-11214 MsG0080049004.01.T01:CDS 20.0%
!!! GAAATTTTGTTTAAGCTTTT+AGG - contig602end:11255-11274 MsG0080049004.01.T01:CDS 20.0%
! ACAACATTGAATGAGTTAAA+AGG - contig602end:10691-10710 MsG0080049004.01.T01:CDS 25.0%
! ATTTATTAATAGGTGAATCG+TGG + contig602end:11689-11708 MsG0080049004.01.T01:intergenic 25.0%
! TTGTGATTGAAAGGAAATAA+TGG + contig602end:10263-10282 MsG0080049004.01.T01:intergenic 25.0%
!! TTCTCATTTTGTATTGCTTT+CGG - contig602end:10900-10919 MsG0080049004.01.T01:CDS 25.0%
!!! AAATTTGGATGTTTTTGATG+AGG - contig602end:10741-10760 MsG0080049004.01.T01:CDS 25.0%
!!! GAGCAAACAATATTTTAAGA+TGG - contig602end:11546-11565 MsG0080049004.01.T01:exon 25.0%
AAGTTCTTGAAAGTTCCAAT+AGG - contig602end:11288-11307 MsG0080049004.01.T01:CDS 30.0%
AATGAGAAGAAGAAAAAGAG+TGG + contig602end:10225-10244 MsG0080049004.01.T01:intergenic 30.0%
ACCTAAACTCTTAAAAAACG+CGG + contig602end:11043-11062 MsG0080049004.01.T01:intergenic 30.0%
ACCTATAAGTGAACAAGATT+TGG - contig602end:11134-11153 MsG0080049004.01.T01:CDS 30.0%
AGAGAAAAGAGTGGAATAAA+GGG - contig602end:10652-10671 MsG0080049004.01.T01:CDS 30.0%
AGTTCTTGAAAGTTCCAATA+GGG - contig602end:11289-11308 MsG0080049004.01.T01:CDS 30.0%
ATTGGAACTTTCAAGAACTT+GGG + contig602end:11288-11307 MsG0080049004.01.T01:intergenic 30.0%
GGTTTAGTTATAGTATAGTG+AGG - contig602end:11013-11032 MsG0080049004.01.T01:CDS 30.0%
GTAAGAGAAATCTAAATGGA+TGG + contig602end:10189-10208 MsG0080049004.01.T01:intergenic 30.0%
GTGTGTAAGAGAAATCTAAA+TGG + contig602end:10193-10212 MsG0080049004.01.T01:intergenic 30.0%
TAGAGAAAAGAGTGGAATAA+AGG - contig602end:10651-10670 MsG0080049004.01.T01:CDS 30.0%
TATTGGAACTTTCAAGAACT+TGG + contig602end:11289-11308 MsG0080049004.01.T01:intergenic 30.0%
TCCAAAAGATGTTAATGTCT+TGG - contig602end:10549-10568 MsG0080049004.01.T01:CDS 30.0%
TCTTGCTTCTAAATGTTGAT+GGG + contig602end:10528-10547 MsG0080049004.01.T01:intergenic 30.0%
TGTTCTTGACAATTTGGTTA+AGG - contig602end:11332-11351 MsG0080049004.01.T01:CDS 30.0%
TTAAGAAATTGTGAATGCAG+AGG + contig602end:10293-10312 MsG0080049004.01.T01:intergenic 30.0%
TTCTTGCTTCTAAATGTTGA+TGG + contig602end:10529-10548 MsG0080049004.01.T01:intergenic 30.0%
TTTCTCTGATGTGACAAATT+TGG - contig602end:10726-10745 MsG0080049004.01.T01:CDS 30.0%
! AACAAGATTTTACCTATTGG+AGG - contig602end:11198-11217 MsG0080049004.01.T01:CDS 30.0%
! AACTTGTTCAGATTGTGAAA+GGG + contig602end:10497-10516 MsG0080049004.01.T01:intergenic 30.0%
! ACCAAGACATTAACATCTTT+TGG + contig602end:10553-10572 MsG0080049004.01.T01:intergenic 30.0%
! ACTAAGAATAGTCTTTTAGC+TGG - contig602end:10862-10881 MsG0080049004.01.T01:CDS 30.0%
! TATTGGTGTTCTTGACAATT+TGG - contig602end:11326-11345 MsG0080049004.01.T01:CDS 30.0%
! TGAAAGAGTTGATTCAAAGA+GGG - contig602end:10608-10627 MsG0080049004.01.T01:CDS 30.0%
! TGTGTGATTTTACCTTGAAT+AGG + contig602end:10432-10451 MsG0080049004.01.T01:intergenic 30.0%
!! AAAAATTGGAAGGTACTATG+CGG - contig602end:11389-11408 MsG0080049004.01.T01:exon 30.0%
!! AAGTTGATTTGGTGAAAGAT+GGG - contig602end:11067-11086 MsG0080049004.01.T01:CDS 30.0%
!! TTTGTTTAAGCTTTTAGGGA+AGG - contig602end:11260-11279 MsG0080049004.01.T01:CDS 30.0%
!!! GTTGGAAGATTTTTTTGCTA+GGG - contig602end:11488-11507 MsG0080049004.01.T01:exon 30.0%
AAAATTTCCCCTTGTTCCAA+TGG + contig602end:11243-11262 MsG0080049003.01.T01:intergenic 35.0%
AAACTCTTAAAAAACGCGGT+CGG + contig602end:11039-11058 MsG0080049003.01.T01:intergenic 35.0%
AATCACACAACATAGTGAAG+AGG - contig602end:10126-10145 MsG0080049004.01.T01:exon 35.0%
AGAGAAATCTAAATGGATGG+TGG + contig602end:10186-10205 MsG0080049004.01.T01:intergenic 35.0%
CTGAGTTTGGAAAAATTGGA+AGG - contig602end:11379-11398 MsG0080049004.01.T01:exon 35.0%
CTTGCTTCTAAATGTTGATG+GGG + contig602end:10527-10546 MsG0080049004.01.T01:intergenic 35.0%
GAAAGTGGAAGAATAACACA+GGG + contig602end:10335-10354 MsG0080049004.01.T01:intergenic 35.0%
GAAAGTTCCAATAGGGATTA+TGG - contig602end:11296-11315 MsG0080049004.01.T01:CDS 35.0%
GCAAAATCCATAATCCCTAT+TGG + contig602end:11306-11325 MsG0080049004.01.T01:intergenic 35.0%
GCCAAATCTTGTTCACTTAT+AGG + contig602end:11138-11157 MsG0080049004.01.T01:intergenic 35.0%
GGATTGTGTTTGTGATTGAA+AGG + contig602end:10272-10291 MsG0080049004.01.T01:intergenic 35.0%
TCACTTCATCAACCTATTCA+AGG - contig602end:10417-10436 MsG0080049004.01.T01:CDS 35.0%
TCTTGTCTTGCTAGTAGAAA+TGG - contig602end:10802-10821 MsG0080049004.01.T01:CDS 35.0%
TGAAAGTGGAAGAATAACAC+AGG + contig602end:10336-10355 MsG0080049004.01.T01:intergenic 35.0%
TGAAGAGAAATTGAAGGAGA+GGG + contig602end:10386-10405 MsG0080049004.01.T01:intergenic 35.0%
! CAACTTGTTCAGATTGTGAA+AGG + contig602end:10498-10517 MsG0080049004.01.T01:intergenic 35.0%
! GATGTTAATGTCTTGGTAGT+AGG - contig602end:10556-10575 MsG0080049004.01.T01:CDS 35.0%
! GGTTAAGGTATTTCCTTCAT+TGG - contig602end:11347-11366 MsG0080049004.01.T01:CDS 35.0%
! GTGAAAGAGTTGATTCAAAG+AGG - contig602end:10607-10626 MsG0080049004.01.T01:CDS 35.0%
! TGTTGATTGTGTAATGAGTG+AGG - contig602end:11167-11186 MsG0080049004.01.T01:CDS 35.0%
! TTGATTTTGGATCCTGATAC+TGG - contig602end:11423-11442 MsG0080049004.01.T01:exon 35.0%
!! AATAGGTTGATGAAGTGAGA+AGG + contig602end:10415-10434 MsG0080049004.01.T01:intergenic 35.0%
!! AGAATAGTCTTTTAGCTGGT+AGG - contig602end:10866-10885 MsG0080049004.01.T01:CDS 35.0%
!! CAAGTTGATTTGGTGAAAGA+TGG - contig602end:11066-11085 MsG0080049004.01.T01:CDS 35.0%
!! GGGATTATGGATTTTGCTAT+TGG - contig602end:11309-11328 MsG0080049004.01.T01:CDS 35.0%
!! TTTAGGTGGTCAAGTTGATT+TGG - contig602end:11056-11075 MsG0080049004.01.T01:CDS 35.0%
!!! ACCGCGTTTTTTAAGAGTTT+AGG - contig602end:11039-11058 MsG0080049004.01.T01:CDS 35.0%
!!! CGTTGGAAGATTTTTTTGCT+AGG - contig602end:11487-11506 MsG0080049004.01.T01:exon 35.0%
!!! GCGTTTTTTAAGAGTTTAGG+TGG - contig602end:11042-11061 MsG0080049004.01.T01:CDS 35.0%
!!! GGCTGAAAGTATGTTGATTT+TGG - contig602end:11410-11429 MsG0080049004.01.T01:exon 35.0%
AACGTATCATTCCCATAGCT+CGG + contig602end:11471-11490 MsG0080049003.01.T01:intergenic 40.0%
AGAAATTGAAGGAGAGGGTT+TGG + contig602end:10381-10400 MsG0080049004.01.T01:intergenic 40.0%
AGGGTGTGAAGAGAAATTGA+AGG + contig602end:10392-10411 MsG0080049004.01.T01:intergenic 40.0%
CAACATCAAAACCAACACCT+AGG + contig602end:10777-10796 MsG0080049004.01.T01:intergenic 40.0%
CCATCACCAAACATCACATA+AGG + contig602end:11096-11115 MsG0080049004.01.T01:intergenic 40.0%
GATGAGGATTTGAAGAACCT+AGG - contig602end:10757-10776 MsG0080049004.01.T01:CDS 40.0%
GATTTGAAGAACCTAGGTGT+TGG - contig602end:10763-10782 MsG0080049004.01.T01:CDS 40.0%
GCAATAGCTAGAGAAAAGAG+TGG - contig602end:10643-10662 MsG0080049004.01.T01:CDS 40.0%
GCTGCTGAGTTTGGAAAAAT+TGG - contig602end:11375-11394 MsG0080049004.01.T01:CDS 40.0%
GTAGGTTCAACTGGGTATAT+AGG - contig602end:10574-10593 MsG0080049004.01.T01:CDS 40.0%
GTCTTGCTAGTAGAAATGGA+GGG - contig602end:10806-10825 MsG0080049004.01.T01:CDS 40.0%
GTGAAGAGAAATTGAAGGAG+AGG + contig602end:10387-10406 MsG0080049004.01.T01:intergenic 40.0%
TAGTAGAAATGGAGGGGTTA+AGG - contig602end:10813-10832 MsG0080049004.01.T01:CDS 40.0%
TCTTGCTAGTAGAAATGGAG+GGG - contig602end:10807-10826 MsG0080049004.01.T01:CDS 40.0%
TGTCTTGCTAGTAGAAATGG+AGG - contig602end:10805-10824 MsG0080049004.01.T01:CDS 40.0%
! ATTGACTCCATTGGAACAAG+GGG - contig602end:11233-11252 MsG0080049004.01.T01:CDS 40.0%
! ATTTTACCTATTGGAGGACC+AGG - contig602end:11204-11223 MsG0080049004.01.T01:CDS 40.0%
! CCTTATGTGATGTTTGGTGA+TGG - contig602end:11093-11112 MsG0080049004.01.T01:CDS 40.0%
! TCTTGGTAGTAGGTTCAACT+GGG - contig602end:10566-10585 MsG0080049004.01.T01:CDS 40.0%
! TTTTACCTATTGGAGGACCA+GGG - contig602end:11205-11224 MsG0080049004.01.T01:CDS 40.0%
!! CATTGACTCCATTGGAACAA+GGG - contig602end:11232-11251 MsG0080049004.01.T01:CDS 40.0%
!! CTTTTAGCTGGTAGGAAACT+TGG - contig602end:10874-10893 MsG0080049004.01.T01:CDS 40.0%
!!! ATTTTTTTGCTAGGGTGCTC+AGG - contig602end:11496-11515 MsG0080049004.01.T01:exon 40.0%
!!! TTTTTTTGCTAGGGTGCTCA+GGG - contig602end:11497-11516 MsG0080049004.01.T01:exon 40.0%
AGGAAGCGGAGAAAGATGAT+AGG - contig602end:10992-11011 MsG0080049004.01.T01:CDS 45.0%
ATGGAGGGGTTAAGGATTCA+TGG - contig602end:10821-10840 MsG0080049004.01.T01:CDS 45.0%
GAGCTATGGGAATGATACGT+TGG - contig602end:11470-11489 MsG0080049004.01.T01:exon 45.0%
TCAGCAGCATCTTCCAATGA+AGG + contig602end:11363-11382 MsG0080049004.01.T01:intergenic 45.0%
TTGGAAGATGCTGCTGAGTT+TGG - contig602end:11366-11385 MsG0080049004.01.T01:CDS 45.0%
! ATGGTGGTGATGAGAATACG+TGG + contig602end:10170-10189 MsG0080049004.01.T01:intergenic 45.0%
! GGGAAGCCTTATGTGATGTT+TGG - contig602end:11087-11106 MsG0080049004.01.T01:CDS 45.0%
! GTCTTGGTAGTAGGTTCAAC+TGG - contig602end:10565-10584 MsG0080049004.01.T01:CDS 45.0%
! TGGTGGTGATGAGAATACGT+GGG + contig602end:10169-10188 MsG0080049004.01.T01:intergenic 45.0%
!! AGGGTTTGGTGTTTGAGTGA+GGG + contig602end:10367-10386 MsG0080049004.01.T01:intergenic 45.0%
!! AGGTTGATGAAGTGAGAAGG+AGG + contig602end:10412-10431 MsG0080049004.01.T01:intergenic 45.0%
!! GCATTGACTCCATTGGAACA+AGG - contig602end:11231-11250 MsG0080049004.01.T01:CDS 45.0%
!! GCTTGAGGATGAGTTGGTAA+AGG - contig602end:10972-10991 MsG0080049004.01.T01:CDS 45.0%
!! GGATGAGTTGGTAAAGGAAG+CGG - contig602end:10978-10997 MsG0080049004.01.T01:CDS 45.0%
!! GGTTGATGAAGTGAGAAGGA+GGG + contig602end:10411-10430 MsG0080049004.01.T01:intergenic 45.0%
AATGGAGTCAATGCCTTCCC+TGG + contig602end:11225-11244 MsG0080049004.01.T01:intergenic 50.0%
ATGAGAAGACGCCGAGCTAT+GGG - contig602end:11457-11476 MsG0080049004.01.T01:exon 50.0%
GCTGAAGCTTGAGGATGAGT+TGG - contig602end:10966-10985 MsG0080049004.01.T01:CDS 50.0%
! GGTGGTGATGAGAATACGTG+GGG + contig602end:10168-10187 MsG0080049004.01.T01:intergenic 50.0%
! TGAGGGGTGTGTGATGAAAG+TGG + contig602end:10350-10369 MsG0080049004.01.T01:intergenic 50.0%
!! AGGGAAGGCATTGACTCCAT+TGG - contig602end:11224-11243 MsG0080049004.01.T01:CDS 50.0%
!! GAGGGTTTGGTGTTTGAGTG+AGG + contig602end:10368-10387 MsG0080049004.01.T01:intergenic 50.0%
!! GGGTTTGGTGTTTGAGTGAG+GGG + contig602end:10366-10385 MsG0080049004.01.T01:intergenic 50.0%
ACCTATTGGAGGACCAGGGA+AGG - contig602end:11209-11228 MsG0080049004.01.T01:CDS 55.0%
GATGAGAAGACGCCGAGCTA+TGG - contig602end:11456-11475 MsG0080049004.01.T01:exon 55.0%
GCACGCTGAAACTCGAGAAG+AGG + contig602end:10943-10962 MsG0080049004.01.T01:intergenic 55.0%
TCGCTGTACTCGCCAGTATC+AGG + contig602end:11438-11457 MsG0080049004.01.T01:intergenic 55.0%
! TTGCTAGGGTGCTCAGGGAA+GGG - contig602end:11502-11521 MsG0080049004.01.T01:exon 55.0%
! TTTGCTAGGGTGCTCAGGGA+AGG - contig602end:11501-11520 MsG0080049004.01.T01:exon 55.0%
GCCTTCCCTGGTCCTCCAAT+AGG + contig602end:11213-11232 MsG0080049004.01.T01:intergenic 60.0%
GCGTGCGAAGCTGAAGCTTG+AGG - contig602end:10957-10976 MsG0080049004.01.T01:CDS 60.0%
! GGGATGGCTGGTCAAGAGCT+AGG - contig602end:11522-11541 MsG0080049004.01.T01:exon 60.0%
! TAGGGTGCTCAGGGAAGGGA+TGG - contig602end:11506-11525 MsG0080049004.01.T01:exon 60.0%
GTGCTCAGGGAAGGGATGGC+TGG - contig602end:11510-11529 MsG0080049004.01.T01:exon 65.0%
Chromosome Type Strat End Strand Name
contig602end gene 10001 11721 10001 ID=MsG0080049004.01;
contig602end mRNA 10001 11721 10001 ID=MsG0080049004.01.T01;Parent=MsG0080049004.01
contig602end exon 10001 11721 10001 ID=MsG0080049004.01.T01.exon;Parent=MsG0080049004.01.T01
contig602end CDS 10159 11394 10159 ID=MsG0080049004.01.T01.cds;Parent=MsG0080049004.01.T01
Gene Sequence

>MsG0080049004.01.T01

ATGTCCCTGTGTTATTCTTCCACTTTCATCACACACCCCTCACTCAAACACCAAACCCTCTCCTTCAATTTCTCTTCACACCCTCCTTCTCACTTCATCAACCTATTCAAGGTAAAATCACACAGACCCATTAAGTATAACAAACAAAAATTGAAACTTTATGCATCCCTTTCACAATCTGAACAAGTTGAAACGACCCCATCAACATTTAGAAGCAAGAATCCAAAAGATGTTAATGTCTTGGTAGTAGGTTCAACTGGGTATATAGGAAAATTTGTAGTGAAAGAGTTGATTCAAAGAGGGTTTAATGTTACTGCAATAGCTAGAGAAAAGAGTGGAATAAAGGGTAGCATTGATAAAGAAACAACATTGAATGAGTTAAAAGGTGCTAATGTGTGTTTCTCTGATGTGACAAATTTGGATGTTTTTGATGAGGATTTGAAGAACCTAGGTGTTGGTTTTGATGTTGTTGTGTCTTGTCTTGCTAGTAGAAATGGAGGGGTTAAGGATTCATGGAAGATTGATTATGAAGCTACTAAGAATAGTCTTTTAGCTGGTAGGAAACTTGGTGCTTCTCATTTTGTATTGCTTTCGGCAATTTGTGTTCAGAAGCCTCTTCTCGAGTTTCAGCGTGCGAAGCTGAAGCTTGAGGATGAGTTGGTAAAGGAAGCGGAGAAAGATGATAGGTTTAGTTATAGTATAGTGAGGCCGACCGCGTTTTTTAAGAGTTTAGGTGGTCAAGTTGATTTGGTGAAAGATGGGAAGCCTTATGTGATGTTTGGTGATGGAAAGTTGTGTGCTTGTAAACCTATAAGTGAACAAGATTTGGCTTCTTTTATTGTTGATTGTGTAATGAGTGAGGATAAAATTAACAAGATTTTACCTATTGGAGGACCAGGGAAGGCATTGACTCCATTGGAACAAGGGGAAATTTTGTTTAAGCTTTTAGGGAAGGAGCCCAAGTTCTTGAAAGTTCCAATAGGGATTATGGATTTTGCTATTGGTGTTCTTGACAATTTGGTTAAGGTATTTCCTTCATTGGAAGATGCTGCTGAGTTTGGAAAAATTGGAAGGTACTATGCGGCTGAAAGTATGTTGATTTTGGATCCTGATACTGGCGAGTACAGCGATGAGAAGACGCCGAGCTATGGGAATGATACGTTGGAAGATTTTTTTGCTAGGGTGCTCAGGGAAGGGATGGCTGGTCAAGAGCTAGGTGAGCAAACAATATTTTAA

Protein sequence

>MsG0080049004.01.T01

MSLCYSSTFITHPSLKHQTLSFNFSSHPPSHFINLFKVKSHRPIKYNKQKLKLYASLSQSEQVETTPSTFRSKNPKDVNVLVVGSTGYIGKFVVKELIQRGFNVTAIAREKSGIKGSIDKETTLNELKGANVCFSDVTNLDVFDEDLKNLGVGFDVVVSCLASRNGGVKDSWKIDYEATKNSLLAGRKLGASHFVLLSAICVQKPLLEFQRAKLKLEDELVKEAEKDDRFSYSIVRPTAFFKSLGGQVDLVKDGKPYVMFGDGKLCACKPISEQDLASFIVDCVMSEDKINKILPIGGPGKALTPLEQGEILFKLLGKEPKFLKVPIGIMDFAIGVLDNLVKVFPSLEDAAEFGKIGRYYAAESMLILDPDTGEYSDEKTPSYGNDTLEDFFARVLREGMAGQELGEQTIF*