AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004733.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004733.01.T01 MTR_1g085560 90.116 172 9 1 19 190 88 251 5.48e-112 320
MsG0180004733.01.T01 MTR_7g110980 77.326 172 30 2 19 190 99 261 4.10e-93 272
MsG0180004733.01.T01 MTR_1g117010 64.444 180 52 3 12 188 73 243 4.31e-76 228
MsG0180004733.01.T01 MTR_1g117010 64.444 180 52 3 12 188 73 243 4.31e-76 228
MsG0180004733.01.T01 MTR_3g463900 62.147 177 50 3 19 188 37 203 9.93e-69 208
MsG0180004733.01.T01 MTR_3g070500 60.000 175 53 3 19 186 67 231 2.40e-65 201
MsG0180004733.01.T01 MTR_7g116340 56.111 180 62 3 14 186 2 171 4.47e-63 192
MsG0180004733.01.T01 MTR_4g075290 58.974 156 49 2 15 163 3 150 1.16e-61 189
MsG0180004733.01.T01 MTR_3g117750 55.056 178 63 3 19 189 15 182 3.14e-60 186
MsG0180004733.01.T01 MTR_8g040180 52.717 184 72 4 9 186 11 185 1.16e-59 184
MsG0180004733.01.T01 MTR_7g095750 56.250 176 59 3 19 186 10 175 1.47e-57 191
MsG0180004733.01.T01 MTR_4g086760 54.237 177 64 3 19 187 7 174 4.34e-56 179
MsG0180004733.01.T01 MTR_4g073650 53.409 176 66 3 19 187 49 215 4.94e-56 177
MsG0180004733.01.T01 MTR_4g086760 54.237 177 64 3 19 187 7 174 5.24e-56 181
MsG0180004733.01.T01 MTR_4g086760 54.237 177 64 3 19 187 7 174 6.43e-56 180
MsG0180004733.01.T01 MTR_8g079690 53.333 180 67 3 15 186 3 173 2.33e-55 179
MsG0180004733.01.T01 MTR_3g070500 63.846 130 32 2 19 141 67 188 4.34e-50 160
MsG0180004733.01.T01 MTR_3g107660 44.086 186 86 3 13 190 7 182 1.45e-40 146
MsG0180004733.01.T01 MTR_3g070500 69.072 97 23 1 19 108 67 163 1.31e-39 133
MsG0180004733.01.T01 MTR_3g070500 68.750 96 23 1 19 107 67 162 4.33e-39 132
MsG0180004733.01.T01 MTR_1g011980 44.149 188 86 4 11 190 2 178 1.44e-38 140
MsG0180004733.01.T01 MTR_2g085075 44.693 179 85 6 5 182 446 611 2.26e-36 133
MsG0180004733.01.T01 MTR_7g105220 46.497 157 70 6 28 183 17 160 1.75e-35 122
MsG0180004733.01.T01 MTR_8g036015 50.704 142 55 6 30 169 10 138 2.02e-30 109
MsG0180004733.01.T01 MTR_3g085705 52.941 102 36 3 68 169 32 121 1.94e-29 105
MsG0180004733.01.T01 MTR_5g015500 45.752 153 69 7 30 181 314 453 3.08e-28 110
MsG0180004733.01.T01 MTR_5g015500 45.752 153 69 7 30 181 354 493 3.61e-28 110
MsG0180004733.01.T01 MTR_2g023120 42.945 163 77 8 23 182 15 164 9.80e-20 86.3
MsG0180004733.01.T01 MTR_6g084140 37.195 164 77 8 28 180 25 173 6.94e-17 78.2
MsG0180004733.01.T01 MTR_6g084140 37.195 164 77 8 28 180 8 156 8.04e-17 78.2
MsG0180004733.01.T01 MTR_8g442420 36.585 164 78 8 28 180 8 156 1.12e-15 74.7
MsG0180004733.01.T01 MTR_2g461260 29.487 156 95 7 30 173 92 244 4.21e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004733.01.T01 AT3G62030 75.000 172 34 2 19 190 97 259 1.08e-91 268
MsG0180004733.01.T01 AT3G62030 75.000 172 34 2 19 190 98 260 1.15e-91 268
MsG0180004733.01.T01 AT3G62030 75.000 172 34 2 19 190 151 313 7.41e-91 268
MsG0180004733.01.T01 AT5G13120 62.222 180 56 3 12 188 82 252 3.09e-75 226
MsG0180004733.01.T01 AT5G13120 64.162 173 50 3 19 188 93 256 4.04e-75 226
MsG0180004733.01.T01 AT2G29960 62.147 177 50 3 19 188 35 201 1.96e-68 207
MsG0180004733.01.T01 AT2G29960 62.147 177 50 3 19 188 35 201 1.96e-68 207
MsG0180004733.01.T01 AT5G58710 62.147 177 50 3 19 188 38 204 4.07e-68 207
MsG0180004733.01.T01 AT2G21130 56.667 180 61 3 14 186 3 172 6.82e-65 197
MsG0180004733.01.T01 AT3G55920 58.757 177 56 3 19 188 62 228 1.56e-63 196
MsG0180004733.01.T01 AT3G56070 56.667 180 61 3 14 186 2 171 1.91e-63 194
MsG0180004733.01.T01 AT3G56070 56.667 180 61 3 14 186 2 171 1.91e-63 194
MsG0180004733.01.T01 AT4G38740 56.000 175 60 3 19 186 7 171 1.25e-62 192
MsG0180004733.01.T01 AT2G16600 59.236 157 49 2 14 163 3 151 1.96e-62 191
MsG0180004733.01.T01 AT2G29960 57.627 177 48 4 19 188 35 191 1.79e-59 184
MsG0180004733.01.T01 AT2G38730 52.174 184 73 4 9 186 25 199 1.39e-58 182
MsG0180004733.01.T01 AT3G63400 55.801 181 62 4 13 185 4 174 1.58e-57 186
MsG0180004733.01.T01 AT4G34870 52.778 180 68 3 14 186 2 171 2.35e-57 178
MsG0180004733.01.T01 AT3G63400 55.801 181 62 4 13 185 4 174 8.49e-56 185
MsG0180004733.01.T01 AT3G63400 55.801 181 62 4 13 185 4 174 8.49e-56 185
MsG0180004733.01.T01 AT3G63400 55.801 181 62 4 13 185 4 174 8.49e-56 185
MsG0180004733.01.T01 AT2G15790 54.802 177 63 3 19 187 7 174 1.26e-54 177
MsG0180004733.01.T01 AT4G34960 52.809 178 68 3 19 189 50 218 3.15e-54 172
MsG0180004733.01.T01 AT2G16600 54.667 150 45 2 14 163 3 129 5.39e-52 164
MsG0180004733.01.T01 AT4G34960 56.154 130 42 2 19 141 50 171 1.55e-41 138
MsG0180004733.01.T01 AT3G44600 48.447 161 69 6 23 182 478 625 1.20e-36 134
MsG0180004733.01.T01 AT2G36130 45.860 157 71 6 28 183 17 160 4.90e-35 121
MsG0180004733.01.T01 AT4G32420 42.623 183 87 4 11 185 2 174 2.46e-34 128
MsG0180004733.01.T01 AT4G32420 42.623 183 87 4 11 185 2 174 2.46e-34 128
MsG0180004733.01.T01 AT4G32420 42.623 183 87 4 11 185 2 174 2.46e-34 128
MsG0180004733.01.T01 AT4G32420 42.623 183 87 4 11 185 2 174 2.46e-34 128
MsG0180004733.01.T01 AT3G22920 40.110 182 86 6 13 186 1 167 3.40e-34 121
MsG0180004733.01.T01 AT4G32420 45.342 161 72 3 11 163 2 154 4.75e-33 124
MsG0180004733.01.T01 AT1G01940 49.286 140 56 6 30 167 10 136 6.71e-30 108
MsG0180004733.01.T01 AT5G67530 44.516 155 72 7 30 183 353 494 2.04e-28 111
MsG0180004733.01.T01 AT4G33060 47.368 133 54 6 23 152 15 134 5.17e-25 101
MsG0180004733.01.T01 AT1G53720 36.628 172 87 7 28 189 8 167 1.40e-18 82.4
MsG0180004733.01.T01 AT1G53720 36.585 164 84 6 28 183 8 159 3.25e-18 82.0

Find 45 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGTTATTGGCCTATT+TGG 0.177067 1:+81920694 MsG0180004733.01.T01:CDS
AATCAAAGATTTCATGATTC+AGG 0.190133 1:+81920918 MsG0180004733.01.T01:CDS
GACAATCGCCATGTTGTATT+TGG 0.201360 1:+81922393 MsG0180004733.01.T01:CDS
TCGGAAATTCTCAACTGTTT+TGG 0.213114 1:-81920728 None:intergenic
GGTTTCTTTGATGTAGTTAT+TGG 0.242268 1:+81920655 MsG0180004733.01.T01:CDS
AATTGACTGCCGTTACTATT+AGG 0.265422 1:-81921348 None:intergenic
TACATGGCTGTGTTACTTCT+AGG 0.304352 1:+81920601 None:intergenic
TCTGCTGGAAGGATTGTTAT+TGG 0.310916 1:+81920685 MsG0180004733.01.T01:CDS
AGAAACCTTGCTTGTTACTT+TGG 0.356817 1:-81920639 None:intergenic
TGGGAACAACATCTCCAAAT+AGG 0.365016 1:-81920708 None:intergenic
ACTGGTGGAGTCAGTATCTA+TGG 0.378727 1:+81921071 MsG0180004733.01.T01:CDS
TGTGCAGGAGAGAAAGGATA+TGG 0.434325 1:+81920868 MsG0180004733.01.T01:intron
TCTGGAGAACTTCCTCTAGA+TGG 0.439502 1:+81922513 MsG0180004733.01.T01:CDS
ATCAAAGATTTCATGATTCA+GGG 0.450983 1:+81920919 MsG0180004733.01.T01:CDS
GTATTTGGACATGTCATTGA+TGG 0.451288 1:+81922408 MsG0180004733.01.T01:CDS
AGATTTCATGATTCAGGGAG+GGG 0.477957 1:+81920924 MsG0180004733.01.T01:CDS
TTCTTTGATGTAGTTATTGG+AGG 0.483234 1:+81920658 MsG0180004733.01.T01:CDS
AATAACTGTGCAGGAGAGAA+AGG 0.485014 1:+81920862 MsG0180004733.01.T01:intron
AATTTCCGAGCTTTGTGCAC+AGG 0.492690 1:+81920742 MsG0180004733.01.T01:CDS
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 1:+81921300 MsG0180004733.01.T01:intron
ACATGCAAAATTGTTAACTC+TGG 0.506072 1:+81922495 MsG0180004733.01.T01:CDS
TTTAATTGGATGCAGGGAAC+TGG 0.519277 1:+81921053 MsG0180004733.01.T01:intron
GCTTACCTGTGCACAAAGCT+CGG 0.530446 1:-81920747 None:intergenic
TTTGATTATGCGATGGAAGG+TGG 0.537643 1:-81920902 None:intergenic
CATGTTGTAGACTTCATGGT+TGG 0.543936 1:+81922371 MsG0180004733.01.T01:intron
TGGACATGTCATTGATGGAA+TGG 0.546157 1:+81922413 MsG0180004733.01.T01:CDS
TTTGCCATGCTCAAAACTCC+AGG 0.566786 1:-81921318 None:intergenic
GTTATTGGAGGTGAATCTGC+TGG 0.567014 1:+81920670 MsG0180004733.01.T01:CDS
TGAAATCTTTGATTATGCGA+TGG 0.571761 1:-81920909 None:intergenic
AAGATTTCATGATTCAGGGA+GGG 0.575956 1:+81920923 MsG0180004733.01.T01:CDS
TGTGAGGACACTTGAATCAC+AGG 0.579355 1:+81922440 MsG0180004733.01.T01:CDS
AATTGGATGCAGGGAACTGG+TGG 0.579513 1:+81921056 MsG0180004733.01.T01:intron
TTCCTTGCAGTGAAGCATGT+TGG 0.583628 1:+81921294 MsG0180004733.01.T01:intron
ACTGCCGTTACTATTAGGAC+CGG 0.594476 1:-81921343 None:intergenic
ATCTTTGATTATGCGATGGA+AGG 0.597625 1:-81920905 None:intergenic
GAGACAAGCAGCTACAACAA+TGG 0.607894 1:+81922462 MsG0180004733.01.T01:CDS
TTGGAGGTGAATCTGCTGGA+AGG 0.612520 1:+81920674 MsG0180004733.01.T01:CDS
CAGGGAGGGGACTTCACAGA+AGG 0.623364 1:+81920937 MsG0180004733.01.T01:CDS
GCAAGCCAAAGTAACAAGCA+AGG 0.646742 1:+81920634 MsG0180004733.01.T01:CDS
AATGCCGGTCCTAATAGTAA+CGG 0.652519 1:+81921339 MsG0180004733.01.T01:CDS
AGGAGAGATCAACCATCTAG+AGG 0.666652 1:-81922525 MsG0180004732.01.T01:three_prime_UTR
AAAGATTTCATGATTCAGGG+AGG 0.670380 1:+81920922 MsG0180004733.01.T01:CDS
GGTGGAGTCAGTATCTATGG+TGG 0.680041 1:+81921074 MsG0180004733.01.T01:CDS
TGACATGTCCAAATACAACA+TGG 0.711914 1:-81922401 MsG0180004732.01.T01:three_prime_UTR
TTGATGGAATGGATGTTGTG+AGG 0.719565 1:+81922424 MsG0180004733.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTTAAATAAATTTCAA+AGG - Chr1:81921531-81921550 None:intergenic 10.0%
!! ACAAATTTAAATCTGAATAA+TGG - Chr1:81921206-81921225 None:intergenic 15.0%
!! GAAAACATATTATTAAAACT+TGG - Chr1:81921786-81921805 None:intergenic 15.0%
!! TAATCTAATAAACTATTCTA+AGG + Chr1:81921475-81921494 MsG0180004733.01.T01:intron 15.0%
!!! AAATTAGAGTTTTGAAATAT+AGG - Chr1:81921949-81921968 None:intergenic 15.0%
!! AATATTCCTTGTATGTAAAA+GGG - Chr1:81921821-81921840 None:intergenic 20.0%
!! ACATATTATTAAAACTTGGT+TGG - Chr1:81921782-81921801 None:intergenic 20.0%
!! ATTACTTATGAATCAGATAA+GGG + Chr1:81921412-81921431 MsG0180004733.01.T01:intron 20.0%
!! ATTCATAAGTAATAGAAGAT+GGG - Chr1:81921405-81921424 None:intergenic 20.0%
!! TAATATTCCTTGTATGTAAA+AGG - Chr1:81921822-81921841 None:intergenic 20.0%
!! TATTACTTATGAATCAGATA+AGG + Chr1:81921411-81921430 MsG0180004733.01.T01:intron 20.0%
!! TTACATACAAGGAATATTAT+GGG + Chr1:81921823-81921842 MsG0180004733.01.T01:intron 20.0%
!! TTAGCATTTGTATTAACATT+TGG - Chr1:81921601-81921620 None:intergenic 20.0%
!! TTTACATACAAGGAATATTA+TGG + Chr1:81921822-81921841 MsG0180004733.01.T01:intron 20.0%
!!! AGCATTTAGAATAACTTATT+CGG - Chr1:81921637-81921656 None:intergenic 20.0%
!!! CACATCAAATATGTTTTAAT+TGG + Chr1:81921039-81921058 MsG0180004733.01.T01:intron 20.0%
!!! TAAGCATTCAAATTTTTCTT+CGG + Chr1:81920765-81920784 MsG0180004733.01.T01:intron 20.0%
!!! TTGTCATTTTAATCTTTTAC+TGG + Chr1:81921222-81921241 MsG0180004733.01.T01:intron 20.0%
! AACTCAAAAAACAACTTGTA+AGG - Chr1:81921755-81921774 None:intergenic 25.0%
! AATCAAAGATTTCATGATTC+AGG + Chr1:81920918-81920937 MsG0180004733.01.T01:CDS 25.0%
! AGCGTACTAACAAAATATAA+CGG - Chr1:81920974-81920993 None:intergenic 25.0%
! ATAATTGCATTTGTGAGATT+GGG - Chr1:81922072-81922091 None:intergenic 25.0%
! ATCAAAGATTTCATGATTCA+GGG + Chr1:81920919-81920938 MsG0180004733.01.T01:CDS 25.0%
! GATTCATAAGTAATAGAAGA+TGG - Chr1:81921406-81921425 None:intergenic 25.0%
! TATAATTGCATTTGTGAGAT+TGG - Chr1:81922073-81922092 None:intergenic 25.0%
! TCAATTGCTACAATGTATAT+TGG + Chr1:81922104-81922123 MsG0180004733.01.T01:intron 25.0%
! TGCAATCAAAGTCAATAAAA+AGG - Chr1:81922190-81922209 None:intergenic 25.0%
! TGGTTATTGTCTAAATTGTT+TGG + Chr1:81922009-81922028 MsG0180004733.01.T01:intron 25.0%
! TTACTTATGAATCAGATAAG+GGG + Chr1:81921413-81921432 MsG0180004733.01.T01:intron 25.0%
! TTGACAATTTAACATCAACA+GGG + Chr1:81922138-81922157 MsG0180004733.01.T01:intron 25.0%
! TTTGACAATTTAACATCAAC+AGG + Chr1:81922137-81922156 MsG0180004733.01.T01:intron 25.0%
!! AACAATTTTGCATGTTTTCA+AGG - Chr1:81922490-81922509 MsG0180004732.01.T01:three_prime_UTR 25.0%
!! ACAATTTTGCATGTTTTCAA+GGG - Chr1:81922489-81922508 MsG0180004732.01.T01:three_prime_UTR 25.0%
!! ACTAAAAGTCTGTACTTTTA+TGG + Chr1:81921975-81921994 MsG0180004733.01.T01:intron 25.0%
!! CAGTATTAAAAGTTTTGCTT+TGG + Chr1:81921180-81921199 MsG0180004733.01.T01:intron 25.0%
!! CTTTTATGGATTTTAAACTG+TGG + Chr1:81921989-81922008 MsG0180004733.01.T01:intron 25.0%
!!! AAAAGTACAGACTTTTAGTT+AGG - Chr1:81921974-81921993 None:intergenic 25.0%
!!! AATATGTTTTAATTGGATGC+AGG + Chr1:81921046-81921065 MsG0180004733.01.T01:intron 25.0%
!!! AATTTTTATTTGCACTGTAC+CGG + Chr1:81921367-81921386 MsG0180004733.01.T01:CDS 25.0%
!!! ATATGTTTTAATTGGATGCA+GGG + Chr1:81921047-81921066 MsG0180004733.01.T01:intron 25.0%
!!! TACAAGTTGTTTTTTGAGTT+AGG + Chr1:81921755-81921774 MsG0180004733.01.T01:intron 25.0%
AAAAAACAACTTGTAAGGTG+AGG - Chr1:81921750-81921769 None:intergenic 30.0%
AAAAACAACTTGTAAGGTGA+GGG - Chr1:81921749-81921768 None:intergenic 30.0%
ACATATACACATGATGCTAA+GGG + Chr1:81921001-81921020 MsG0180004733.01.T01:intron 30.0%
ACATGCAAAATTGTTAACTC+TGG + Chr1:81922495-81922514 MsG0180004733.01.T01:CDS 30.0%
GGTTTCTTTGATGTAGTTAT+TGG + Chr1:81920655-81920674 MsG0180004733.01.T01:CDS 30.0%
TACATATACACATGATGCTA+AGG + Chr1:81921000-81921019 MsG0180004733.01.T01:intron 30.0%
TGAAATCTTTGATTATGCGA+TGG - Chr1:81920912-81920931 None:intergenic 30.0%
TGGACCTACTGAAAAAATAA+AGG + Chr1:81922029-81922048 MsG0180004733.01.T01:intron 30.0%
TTCTTTGATGTAGTTATTGG+AGG + Chr1:81920658-81920677 MsG0180004733.01.T01:CDS 30.0%
TTTGAGAATAATAACTGTGC+AGG + Chr1:81920853-81920872 MsG0180004733.01.T01:intron 30.0%
! TATGAGTATTGTGGTGAAAT+TGG + Chr1:81920801-81920820 MsG0180004733.01.T01:intron 30.0%
! TTTTCATGTTGTAGACTTCA+TGG + Chr1:81922367-81922386 MsG0180004733.01.T01:intron 30.0%
!! CCTGGAAATGTATTTTAAGT+GGG + Chr1:81921717-81921736 MsG0180004733.01.T01:intron 30.0%
!!! CAAGCCTTTATTTTTTCAGT+AGG - Chr1:81922036-81922055 None:intergenic 30.0%
AAAGATTTCATGATTCAGGG+AGG + Chr1:81920922-81920941 MsG0180004733.01.T01:CDS 35.0%
AAGATTTCATGATTCAGGGA+GGG + Chr1:81920923-81920942 MsG0180004733.01.T01:CDS 35.0%
AATTGACTGCCGTTACTATT+AGG - Chr1:81921351-81921370 None:intergenic 35.0%
ATCTTTGATTATGCGATGGA+AGG - Chr1:81920908-81920927 None:intergenic 35.0%
CCCACTTAAAATACATTTCC+AGG - Chr1:81921720-81921739 None:intergenic 35.0%
GTATTTGGACATGTCATTGA+TGG + Chr1:81922408-81922427 MsG0180004733.01.T01:CDS 35.0%
TGACATGTCCAAATACAACA+TGG - Chr1:81922404-81922423 MsG0180004732.01.T01:three_prime_UTR 35.0%
TGGTTGAGACGCTAAATATT+AGG - Chr1:81922279-81922298 None:intergenic 35.0%
! AGAAACCTTGCTTGTTACTT+TGG - Chr1:81920642-81920661 None:intergenic 35.0%
! AGGATTGTTATTGGCCTATT+TGG + Chr1:81920694-81920713 MsG0180004733.01.T01:CDS 35.0%
! ATAGGCTGTGTGTTTCATTT+TGG - Chr1:81921931-81921950 None:intergenic 35.0%
! ATCTTTTACTGGACTGTCAA+TGG + Chr1:81921233-81921252 MsG0180004733.01.T01:intron 35.0%
! CGGAAATTCTCAACTGTTTT+GGG - Chr1:81920730-81920749 None:intergenic 35.0%
! GAAGTTCCCTTTTACATACA+AGG + Chr1:81921812-81921831 MsG0180004733.01.T01:intron 35.0%
! TCGGAAATTCTCAACTGTTT+TGG - Chr1:81920731-81920750 None:intergenic 35.0%
! TTGTCGTTGTATGAGTATTG+TGG + Chr1:81920792-81920811 MsG0180004733.01.T01:intron 35.0%
!! GCCTGGAAATGTATTTTAAG+TGG + Chr1:81921716-81921735 MsG0180004733.01.T01:intron 35.0%
AATAACTGTGCAGGAGAGAA+AGG + Chr1:81920862-81920881 MsG0180004733.01.T01:intron 40.0%
AATGCCGGTCCTAATAGTAA+CGG + Chr1:81921339-81921358 MsG0180004733.01.T01:CDS 40.0%
ACGTTAAATGAGATATGGCC+TGG + Chr1:81921699-81921718 MsG0180004733.01.T01:intron 40.0%
AGATGGGAAAATAGTCTCAC+CGG - Chr1:81921389-81921408 None:intergenic 40.0%
AGATTTCATGATTCAGGGAG+GGG + Chr1:81920924-81920943 MsG0180004733.01.T01:CDS 40.0%
AGGCCATATCTCATTTAACG+TGG - Chr1:81921700-81921719 None:intergenic 40.0%
CATGTTGTAGACTTCATGGT+TGG + Chr1:81922371-81922390 MsG0180004733.01.T01:intron 40.0%
GACAATCGCCATGTTGTATT+TGG + Chr1:81922393-81922412 MsG0180004733.01.T01:CDS 40.0%
GGCCATATCTCATTTAACGT+GGG - Chr1:81921699-81921718 None:intergenic 40.0%
GTCCCACGTTAAATGAGATA+TGG + Chr1:81921694-81921713 MsG0180004733.01.T01:intron 40.0%
TCTGCTGGAAGGATTGTTAT+TGG + Chr1:81920685-81920704 MsG0180004733.01.T01:CDS 40.0%
TGGACATGTCATTGATGGAA+TGG + Chr1:81922413-81922432 MsG0180004733.01.T01:CDS 40.0%
TGGGAACAACATCTCCAAAT+AGG - Chr1:81920711-81920730 None:intergenic 40.0%
TTGATGGAATGGATGTTGTG+AGG + Chr1:81922424-81922443 MsG0180004733.01.T01:CDS 40.0%
TTTAATTGGATGCAGGGAAC+TGG + Chr1:81921053-81921072 MsG0180004733.01.T01:intron 40.0%
TTTGATTATGCGATGGAAGG+TGG - Chr1:81920905-81920924 None:intergenic 40.0%
AAGGGGAATCCTTCTGTGTT+TGG + Chr1:81921430-81921449 MsG0180004733.01.T01:intron 45.0%
ACTGCCGTTACTATTAGGAC+CGG - Chr1:81921346-81921365 None:intergenic 45.0%
ACTGGTGGAGTCAGTATCTA+TGG + Chr1:81921071-81921090 MsG0180004733.01.T01:CDS 45.0%
AGGGGAATCCTTCTGTGTTT+GGG + Chr1:81921431-81921450 MsG0180004733.01.T01:intron 45.0%
CCTGTTTACCCAAACACAGA+AGG - Chr1:81921442-81921461 None:intergenic 45.0%
CCTTCTGTGTTTGGGTAAAC+AGG + Chr1:81921439-81921458 MsG0180004733.01.T01:intron 45.0%
GAGACAAGCAGCTACAACAA+TGG + Chr1:81922462-81922481 MsG0180004733.01.T01:CDS 45.0%
GCAAGCCAAAGTAACAAGCA+AGG + Chr1:81920634-81920653 MsG0180004733.01.T01:CDS 45.0%
GTTATTGGAGGTGAATCTGC+TGG + Chr1:81920670-81920689 MsG0180004733.01.T01:CDS 45.0%
TCTGGAGAACTTCCTCTAGA+TGG + Chr1:81922513-81922532 MsG0180004733.01.T01:CDS 45.0%
TGTGAGGACACTTGAATCAC+AGG + Chr1:81922440-81922459 MsG0180004733.01.T01:CDS 45.0%
TGTGCAGGAGAGAAAGGATA+TGG + Chr1:81920868-81920887 MsG0180004733.01.T01:intron 45.0%
TTCCTTGCAGTGAAGCATGT+TGG + Chr1:81921294-81921313 MsG0180004733.01.T01:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG - Chr1:81921321-81921340 None:intergenic 45.0%
! AATTTCCGAGCTTTGTGCAC+AGG + Chr1:81920742-81920761 MsG0180004733.01.T01:CDS 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG + Chr1:81921324-81921343 MsG0180004733.01.T01:CDS 45.0%
AATTGGATGCAGGGAACTGG+TGG + Chr1:81921056-81921075 MsG0180004733.01.T01:intron 50.0%
GACCAACATGCTTCACTGCA+AGG - Chr1:81921299-81921318 None:intergenic 50.0%
GCTTACCTGTGCACAAAGCT+CGG - Chr1:81920750-81920769 None:intergenic 50.0%
GGTGGAGTCAGTATCTATGG+TGG + Chr1:81921074-81921093 MsG0180004733.01.T01:CDS 50.0%
TTGGAGGTGAATCTGCTGGA+AGG + Chr1:81920674-81920693 MsG0180004733.01.T01:CDS 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG + Chr1:81921314-81921333 MsG0180004733.01.T01:CDS 50.0%
GCAGTGAAGCATGTTGGTCC+TGG + Chr1:81921300-81921319 MsG0180004733.01.T01:intron 55.0%
CAGGGAGGGGACTTCACAGA+AGG + Chr1:81920937-81920956 MsG0180004733.01.T01:CDS 60.0%
GTGTGTGCGCGCGCACGTGC+TGG - Chr1:81922299-81922318 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81920604 81922539 81920604 ID=MsG0180004733.01;Name=MsG0180004733.01
Chr1 mRNA 81920604 81922539 81920604 ID=MsG0180004733.01.T01;Parent=MsG0180004733.01;Name=MsG0180004733.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0|0|1|1|1|6|0|190
Chr1 exon 81920604 81920763 81920604 ID=MsG0180004733.01.T01:exon:34543;Parent=MsG0180004733.01.T01
Chr1 exon 81920875 81920963 81920875 ID=MsG0180004733.01.T01:exon:34544;Parent=MsG0180004733.01.T01
Chr1 exon 81921068 81921122 81921068 ID=MsG0180004733.01.T01:exon:34545;Parent=MsG0180004733.01.T01
Chr1 exon 81921304 81921388 81921304 ID=MsG0180004733.01.T01:exon:34546;Parent=MsG0180004733.01.T01
Chr1 exon 81922159 81922183 81922159 ID=MsG0180004733.01.T01:exon:34547;Parent=MsG0180004733.01.T01
Chr1 exon 81922381 81922539 81922381 ID=MsG0180004733.01.T01:exon:34548;Parent=MsG0180004733.01.T01
Chr1 CDS 81920604 81920763 81920604 ID=MsG0180004733.01.T01:cds;Parent=MsG0180004733.01.T01
Chr1 CDS 81920875 81920963 81920875 ID=MsG0180004733.01.T01:cds;Parent=MsG0180004733.01.T01
Chr1 CDS 81921068 81921122 81921068 ID=MsG0180004733.01.T01:cds;Parent=MsG0180004733.01.T01
Chr1 CDS 81921304 81921388 81921304 ID=MsG0180004733.01.T01:cds;Parent=MsG0180004733.01.T01
Chr1 CDS 81922159 81922183 81922159 ID=MsG0180004733.01.T01:cds;Parent=MsG0180004733.01.T01
Chr1 CDS 81922381 81922539 81922381 ID=MsG0180004733.01.T01:cds;Parent=MsG0180004733.01.T01
Gene Sequence

>MsG0180004733.01.T01

ATGGCTGTGTTACTTCTAGGCTGCAGATCTGCAAGCCAAAGTAACAAGCAAGGTTTCTTTGATGTAGTTATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAGAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTACTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATAGTAACGGCAGTCAATTTTTATTTGCACTGTACCGGGCACTATCTTTTGCTAACGTGAAAACTTCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAATCACAGGAGACAAGCAGCTACAACAATGGTCCCTTGAAAACATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA

Protein sequence

>MsG0180004733.01.T01

MAVLLLGCRSASQSNKQGFFDVVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKDFMIQGGDFTEGNGTGGVSIYGGKFEDENFTLKHVGPGVLSMANAGPNSNGSQFLFALYRALSFANVKTSWLDNRHVVFGHVIDGMDVVRTLESQETSSYNNGPLKTCKIVNSGELPLDG*