AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008591.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008591.01.T01 MTR_2g044920 88.636 176 8 3 1 174 1 166 1.08e-98 282
MsG0280008591.01.T01 MTR_2g044920 85.156 128 7 3 1 126 1 118 1.11e-60 185
MsG0280008591.01.T01 MTR_5g041290 34.161 161 88 6 19 172 14 163 3.94e-20 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008591.01.T01 AT1G48350 76.296 135 24 1 40 174 44 170 1.24e-70 211
MsG0280008591.01.T01 AT1G14205 38.060 134 71 3 40 172 45 167 4.84e-19 79.7
MsG0280008591.01.T01 AT3G17626 71.053 38 11 0 121 158 10 47 1.32e-12 60.1

Find 62 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGAGTTCTTGCATATTA+TGG 0.122595 2:-34430453 MsG0280008591.01.T01:three_prime_UTR
GCAAAATCCTGTCTGGAAAT+AGG 0.169851 2:-34430742 MsG0280008591.01.T01:CDS
ACTGACAATCTTGGTCTTTC+GGG 0.186347 2:+34431783 None:intergenic
GACTGACAATCTTGGTCTTT+CGG 0.258728 2:+34431782 None:intergenic
TAAAGAGGAAGAAGATGAAT+TGG 0.263533 2:+34433715 None:intergenic
CAAGAGTTCTTGCATATTAT+GGG 0.294954 2:-34430452 MsG0280008591.01.T01:three_prime_UTR
TATGCAAGAACTCTTGTAAA+AGG 0.296836 2:+34430459 None:intergenic
CAAAATCCTGTCTGGAAATA+GGG 0.298158 2:-34430741 MsG0280008591.01.T01:CDS
TTCTTCCTCTTTATCTTTCG+TGG 0.341230 2:-34433705 MsG0280008591.01.T01:CDS
ACAGTGAAGAGGAGGAAGAA+GGG 0.353557 2:+34433759 None:intergenic
AACAACTAAACACTAAGAAA+TGG 0.401891 2:+34430486 None:intergenic
TTCCCTTCGAGTAGTGGCTT+TGG 0.404149 2:+34433676 None:intergenic
AACAGTGAAGAGGAGGAAGA+AGG 0.416398 2:+34433758 None:intergenic
TTGGACAAAGAGATGCTTGT+TGG 0.418067 2:+34431752 None:intergenic
TTGTTTATTGTTTAAATCCT+CGG 0.420140 2:+34430583 None:intergenic
TAGAATGTTCAATACTTAAG+TGG 0.441366 2:-34430403 MsG0280008591.01.T01:three_prime_UTR
TATCAGGAACTTACAATTGT+AGG 0.452312 2:+34431642 None:intergenic
AAAGATATTTAATGAGAACT+TGG 0.458023 2:+34430368 None:intergenic
AAAGAGGAAGAAGATGAATT+GGG 0.463016 2:+34433716 None:intergenic
TGGGGTGCTTAAAACGCAAA+TGG 0.466124 2:-34430433 MsG0280008591.01.T01:three_prime_UTR
AATCATTGCAAAATCCTGTC+TGG 0.467654 2:-34430749 MsG0280008591.01.T01:CDS
TGAAGAGGAGGAAGAAGGGG+AGG 0.468940 2:+34433763 None:intergenic
GATCGGAAGACTGACAATCT+TGG 0.473706 2:+34431774 None:intergenic
TGTGATCCCTATTTCCAGAC+AGG 0.474164 2:+34430735 None:intergenic
GAAGAAGATGAATTGGGATT+CGG 0.480622 2:+34433722 None:intergenic
GCTTTAACACGACCATGGTA+TGG 0.480675 2:+34430685 None:intergenic
GAAGAGGAGGAAGAAGGGGA+GGG 0.485629 2:+34433764 None:intergenic
CAGTGAAGAGGAGGAAGAAG+GGG 0.488310 2:+34433760 None:intergenic
CAAAGAGATGCTTGTTGGAT+CGG 0.490439 2:+34431757 None:intergenic
TGTTCAATACTTAAGTGGCT+TGG 0.491148 2:-34430398 MsG0280008591.01.T01:three_prime_UTR
CCTTCTTTCTGATACGAACA+TGG 0.507027 2:+34433639 None:intergenic
TCTGTCTTCCCTTCGAGTAG+TGG 0.511964 2:+34433670 None:intergenic
GAAGAGTTGAACTTCACCTC+TGG 0.512553 2:-34431666 MsG0280008591.01.T01:CDS
GATGAATTGGGATTCGGCGT+TGG 0.517932 2:+34433728 None:intergenic
CCATGTTCGTATCAGAAAGA+AGG 0.545328 2:-34433639 MsG0280008591.01.T01:CDS
AGGGAAATGTGCAAGAATGA+AGG 0.549195 2:+34433783 None:intergenic
TCTTGGTGTCGTCAATCACT+TGG 0.549933 2:+34431733 None:intergenic
GCTGATGCGGCACGCGAACA+TGG 0.549988 2:-34430658 MsG0280008591.01.T01:CDS
TGGATATATAAATATTAACT+AGG 0.561729 2:+34430506 None:intergenic
GCAAGAACTCTTGTAAAAGG+TGG 0.562995 2:+34430462 None:intergenic
ACAAAGGTAGCCTTTGACAG+AGG 0.569891 2:-34430715 MsG0280008591.01.T01:CDS
TGGGTAACCACCTCTGTCAA+AGG 0.571658 2:+34430705 None:intergenic
TTCAACCACGAAAGATAAAG+AGG 0.573055 2:+34433700 None:intergenic
TGAAGCAAGTGTATGCATCT+TGG 0.577835 2:+34431716 None:intergenic
CTTTAACACGACCATGGTAT+GGG 0.578869 2:+34430686 None:intergenic
GCTTCAGGAAGTAGCAAAGA+GGG 0.581508 2:-34430779 MsG0280008591.01.T01:intron
TTCAGCTTCGACAATGCAGA+AGG 0.586530 2:-34431697 MsG0280008591.01.T01:CDS
ATGTTTAAATTTGTAAGCCG+AGG 0.587892 2:-34430600 MsG0280008591.01.T01:three_prime_UTR
AAGAGTTCTTGCATATTATG+GGG 0.590787 2:-34430451 MsG0280008591.01.T01:three_prime_UTR
AACTGTGAACAGTGAAGAGG+AGG 0.595444 2:+34433751 None:intergenic
AAGCCAAAGCCACTACTCGA+AGG 0.598125 2:-34433679 MsG0280008591.01.T01:CDS
TGTTAAAGCTATTGCTGATG+CGG 0.606754 2:-34430671 MsG0280008591.01.T01:CDS
AGCCAAAGCCACTACTCGAA+GGG 0.612684 2:-34433678 MsG0280008591.01.T01:CDS
AAGGTAGCCTTTGACAGAGG+TGG 0.614954 2:-34430712 MsG0280008591.01.T01:CDS
TGGAACTGTGAACAGTGAAG+AGG 0.651425 2:+34433748 None:intergenic
TGCTTCAGGAAGTAGCAAAG+AGG 0.655766 2:-34430780 MsG0280008591.01.T01:intron
TCAGGAAGTAGCAAAGAGGG+TGG 0.657714 2:-34430776 MsG0280008591.01.T01:intron
CAGGAAGTAGCAAAGAGGGT+GGG 0.658309 2:-34430775 MsG0280008591.01.T01:CDS
ACTTACAATTGTAGGACCAG+AGG 0.688517 2:+34431650 None:intergenic
AGAGGTGGTTACCCATACCA+TGG 0.700410 2:-34430697 MsG0280008591.01.T01:CDS
CAATAGCTTTAACACGACCA+TGG 0.706920 2:+34430680 None:intergenic
TCTGGAAATAGGGATCACAA+AGG 0.730190 2:-34430731 MsG0280008591.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATTATTATCAGTTT+GGG + Chr2:34431343-34431362 None:intergenic 10.0%
!! AAATATAGATGTATATTTAC+AGG + Chr2:34431523-34431542 None:intergenic 15.0%
!! ACTGATAATAATTTAATTGA+AGG - Chr2:34431345-34431364 MsG0280008591.01.T01:intron 15.0%
!! CAATTAAATTATTATCAGTT+TGG + Chr2:34431344-34431363 None:intergenic 15.0%
!! CTGATAATAATTTAATTGAA+GGG - Chr2:34431346-34431365 MsG0280008591.01.T01:intron 15.0%
!! TACTAGTTAGATTAATATTT+GGG - Chr2:34430741-34430760 MsG0280008591.01.T01:CDS 15.0%
!! TGGATATATAAATATTAACT+AGG + Chr2:34433684-34433703 None:intergenic 15.0%
!! TTACTAGTTAGATTAATATT+TGG - Chr2:34430740-34430759 MsG0280008591.01.T01:CDS 15.0%
!!! AAATCATTTTATGATTTTTC+AGG - Chr2:34432370-34432389 MsG0280008591.01.T01:intron 15.0%
!!! AAGACTTTTAATAAGTATTA+AGG + Chr2:34432683-34432702 None:intergenic 15.0%
!!! AATTTACTTGATAATGATAA+AGG - Chr2:34431736-34431755 MsG0280008591.01.T01:CDS 15.0%
!! AAGCAACAATATACAATAAT+AGG + Chr2:34431457-34431476 None:intergenic 20.0%
!! ATTTAATTGAAGGGTAAAAT+TGG - Chr2:34431355-34431374 MsG0280008591.01.T01:intron 20.0%
!! GAAATAAAAGAAAGTAACAA+AGG - Chr2:34432036-34432055 MsG0280008591.01.T01:intron 20.0%
!! TAATAAGTATTAAGGAAAAC+AGG + Chr2:34432675-34432694 None:intergenic 20.0%
!! TTAGTTATTATAATTGGAAG+TGG + Chr2:34432987-34433006 None:intergenic 20.0%
!! TTGTTTATTGTTTAAATCCT+CGG + Chr2:34433607-34433626 None:intergenic 20.0%
!!! AAATTGGTTTTTGAAGAAAA+TGG - Chr2:34432172-34432191 MsG0280008591.01.T01:intron 20.0%
!!! AATTTTCGTTTACTAAATGA+CGG - Chr2:34433362-34433381 MsG0280008591.01.T01:intron 20.0%
!!! AGGAATTTTTATTATCATCA+GGG + Chr2:34432655-34432674 None:intergenic 20.0%
!!! AGTACTTTGTTTGTAAATTA+TGG - Chr2:34430650-34430669 MsG0280008591.01.T01:CDS 20.0%
!!! ATTGTTGTTGATGTTTTTAT+TGG - Chr2:34430944-34430963 MsG0280008591.01.T01:intron 20.0%
!!! CCAATTTTTTTTTGTAAATC+CGG + Chr2:34432159-34432178 None:intergenic 20.0%
!!! CTTTTGTTAATTGTGTTATT+TGG - Chr2:34431474-34431493 MsG0280008591.01.T01:intron 20.0%
!!! TATCCAAGAATAAACTTTTT+GGG + Chr2:34432852-34432871 None:intergenic 20.0%
!!! TTATCCAAGAATAAACTTTT+TGG + Chr2:34432853-34432872 None:intergenic 20.0%
!!! TTTAGTTTTATGCATTGTTA+TGG + Chr2:34432713-34432732 None:intergenic 20.0%
! AAAATTACTACCCAAATACT+TGG - Chr2:34431383-34431402 MsG0280008591.01.T01:intron 25.0%
! AAATGATAAAAATCACGAGA+AGG + Chr2:34431320-34431339 None:intergenic 25.0%
! AACAACTAAACACTAAGAAA+TGG + Chr2:34433704-34433723 None:intergenic 25.0%
! AATTAGGTATAATGACAAAG+AGG - Chr2:34431192-34431211 MsG0280008591.01.T01:intron 25.0%
! ACCTAATTATGTATTCACTT+GGG + Chr2:34431180-34431199 None:intergenic 25.0%
! ATATGTTCAGTAGCTATTAT+GGG + Chr2:34433051-34433070 None:intergenic 25.0%
! ATTGAGAGAAAGTTCATAAA+AGG - Chr2:34431893-34431912 MsG0280008591.01.T01:intron 25.0%
! CAATAGTATACCAAGTATTT+GGG + Chr2:34431396-34431415 None:intergenic 25.0%
! CAGATTTAATCTACTAAAAG+TGG + Chr2:34431549-34431568 None:intergenic 25.0%
! CCGGATTTACAAAAAAAAAT+TGG - Chr2:34432156-34432175 MsG0280008591.01.T01:intron 25.0%
! GGATTATAAAGCACATTATT+AGG + Chr2:34431865-34431884 None:intergenic 25.0%
! TACCTAATTATGTATTCACT+TGG + Chr2:34431181-34431200 None:intergenic 25.0%
! TAGAAATTAAATCATGGAGA+AGG - Chr2:34432891-34432910 MsG0280008591.01.T01:intron 25.0%
! TAGAATGTTCAATACTTAAG+TGG - Chr2:34433784-34433803 MsG0280008591.01.T01:CDS 25.0%
! TGACACTAGAAATTAAATCA+TGG - Chr2:34432885-34432904 MsG0280008591.01.T01:intron 25.0%
! TGTAAATTTGTAAGTTTCTG+TGG - Chr2:34431976-34431995 MsG0280008591.01.T01:intron 25.0%
! TTACCCAAAAAGTTTATTCT+TGG - Chr2:34432846-34432865 MsG0280008591.01.T01:intron 25.0%
! TTACTGATATCATGTTTAAC+AGG - Chr2:34431768-34431787 MsG0280008591.01.T01:CDS 25.0%
! TTCTGTAAGTAATATACTCA+AGG + Chr2:34432932-34432951 None:intergenic 25.0%
! TTCTTATTCTAAGTTCCTAT+TGG - Chr2:34431260-34431279 MsG0280008591.01.T01:intron 25.0%
! TTGTGAAAAGAGAAGAATTA+CGG + Chr2:34430595-34430614 None:intergenic 25.0%
! TTTATTATCATCAGGGAATA+GGG + Chr2:34432648-34432667 None:intergenic 25.0%
!! AAAAATGTCACTTGAAAATG+AGG + Chr2:34433647-34433666 None:intergenic 25.0%
!! ATTTTGTTGCATTGTCATAA+TGG - Chr2:34431839-34431858 MsG0280008591.01.T01:intron 25.0%
!! CAGGAATTTTTATTATCATC+AGG + Chr2:34432656-34432675 None:intergenic 25.0%
!! TGCACAATTAAGTACTATTT+TGG + Chr2:34430835-34430854 None:intergenic 25.0%
!! TTCATTTTCATTGATCACAA+GGG - Chr2:34433023-34433042 MsG0280008591.01.T01:intron 25.0%
!! TTTAGATTACTTCACGTTTT+AGG - Chr2:34432077-34432096 MsG0280008591.01.T01:intron 25.0%
!! TTTCATTTTCATTGATCACA+AGG - Chr2:34433022-34433041 MsG0280008591.01.T01:intron 25.0%
!! TTTTATTATCATCAGGGAAT+AGG + Chr2:34432649-34432668 None:intergenic 25.0%
!!! CTTGATAATGATAAAGGTAT+AGG - Chr2:34431742-34431761 MsG0280008591.01.T01:CDS 25.0%
!!! GAATAAACTTTTTGGGTAAT+AGG + Chr2:34432845-34432864 None:intergenic 25.0%
!!! TGTTTTTATTGGTCTGATTT+TGG - Chr2:34430955-34430974 MsG0280008591.01.T01:intron 25.0%
!!! TTTATGATTTTTCAGGTTGA+AGG - Chr2:34432377-34432396 MsG0280008591.01.T01:intron 25.0%
AAAGAGGAAGAAGATGAATT+GGG + Chr2:34430474-34430493 None:intergenic 30.0%
AAAGTAACAAAGGAAGATAG+AGG - Chr2:34432046-34432065 MsG0280008591.01.T01:intron 30.0%
AAATTAAATCATGGAGAAGG+AGG - Chr2:34432894-34432913 MsG0280008591.01.T01:intron 30.0%
AAGAGTTCTTGCATATTATG+GGG - Chr2:34433736-34433755 MsG0280008591.01.T01:CDS 30.0%
AATAAGTTCAACCAAGCAAA+TGG - Chr2:34433156-34433175 MsG0280008591.01.T01:intron 30.0%
AATCTGCTTGATTAACCAAT+AGG + Chr2:34431278-34431297 None:intergenic 30.0%
ACAAGAGTTCTTGCATATTA+TGG - Chr2:34433734-34433753 MsG0280008591.01.T01:CDS 30.0%
ATGTTTAAATTTGTAAGCCG+AGG - Chr2:34433587-34433606 MsG0280008591.01.T01:intron 30.0%
ATTTGCTTGGTTGAACTTAT+TGG + Chr2:34433157-34433176 None:intergenic 30.0%
CAAGAGTTCTTGCATATTAT+GGG - Chr2:34433735-34433754 MsG0280008591.01.T01:CDS 30.0%
CATATGTTCAGTAGCTATTA+TGG + Chr2:34433052-34433071 None:intergenic 30.0%
CCTAATTATGTATTCACTTG+GGG + Chr2:34431179-34431198 None:intergenic 30.0%
CTGAAACAAGTCTGTTAAAT+TGG - Chr2:34432306-34432325 MsG0280008591.01.T01:intron 30.0%
GATATGATGAATTATGCAGT+GGG - Chr2:34432335-34432354 MsG0280008591.01.T01:intron 30.0%
GCAATAGTATACCAAGTATT+TGG + Chr2:34431397-34431416 None:intergenic 30.0%
GGAACTTAGAATAAGAACAA+AGG + Chr2:34431257-34431276 None:intergenic 30.0%
TAAAGAGGAAGAAGATGAAT+TGG + Chr2:34430475-34430494 None:intergenic 30.0%
TAATAGCTACTGAACATATG+AGG - Chr2:34433052-34433071 MsG0280008591.01.T01:intron 30.0%
TAATATTTACGCCTTTGTTC+AGG - Chr2:34431105-34431124 MsG0280008591.01.T01:intron 30.0%
TACTTGATTCATTGAGAATG+AGG - Chr2:34431933-34431952 MsG0280008591.01.T01:intron 30.0%
TATCAGGAACTTACAATTGT+AGG + Chr2:34432548-34432567 None:intergenic 30.0%
TATGCAAGAACTCTTGTAAA+AGG + Chr2:34433731-34433750 None:intergenic 30.0%
TATGTTCAGTAGCTATTATG+GGG + Chr2:34433050-34433069 None:intergenic 30.0%
TATGTTGACGTGAGTATTAA+CGG + Chr2:34430895-34430914 None:intergenic 30.0%
TCAAATTTCGCAAATTCAAG+TGG + Chr2:34430631-34430650 None:intergenic 30.0%
TGAACTTTCTCTCAATGAAA+TGG + Chr2:34431889-34431908 None:intergenic 30.0%
TGATATGATGAATTATGCAG+TGG - Chr2:34432334-34432353 MsG0280008591.01.T01:intron 30.0%
TGCATAAAACTAAACACTGA+TGG - Chr2:34432719-34432738 MsG0280008591.01.T01:intron 30.0%
TGGTTCAGAAAACTTATATC+AGG + Chr2:34432118-34432137 None:intergenic 30.0%
TTATTATCATCAGGGAATAG+GGG + Chr2:34432647-34432666 None:intergenic 30.0%
! AAAATTGGTTCAGTTTGGTT+TGG - Chr2:34432218-34432237 MsG0280008591.01.T01:intron 30.0%
! ACCAAAAAATTGGTTCAGTT+TGG - Chr2:34432213-34432232 MsG0280008591.01.T01:intron 30.0%
! ATACAACAAGCTTTTAAGCA+AGG + Chr2:34433326-34433345 None:intergenic 30.0%
! TAATTTAACTTCTGCCAGAT+TGG - Chr2:34432590-34432609 MsG0280008591.01.T01:intron 30.0%
! TCATGTTTAACAGGACATTT+TGG - Chr2:34431777-34431796 MsG0280008591.01.T01:CDS 30.0%
! TTTTAAGCAAGGAAGATTGA+GGG + Chr2:34433315-34433334 None:intergenic 30.0%
!!! ACCAAACTGAACCAATTTTT+TGG + Chr2:34432217-34432236 None:intergenic 30.0%
!!! ACTGAACCAATTTTTTGGTT+CGG + Chr2:34432212-34432231 None:intergenic 30.0%
!!! AGTTTTAAACCAAACTGAAC+CGG - Chr2:34432137-34432156 MsG0280008591.01.T01:intron 30.0%
!!! CTGATTTTGGAGCATTTTAA+TGG - Chr2:34430968-34430987 MsG0280008591.01.T01:intron 30.0%
AAAAGAACTTCAGGATGCAA+AGG + Chr2:34432964-34432983 None:intergenic 35.0%
AAAGAACTTCAGGATGCAAA+GGG + Chr2:34432963-34432982 None:intergenic 35.0%
AACAACACTTACACACTTCT+AGG + Chr2:34432263-34432282 None:intergenic 35.0%
AACTTATTGGTAGATTCCAG+GGG + Chr2:34433144-34433163 None:intergenic 35.0%
AATACTCACGTCAACATAGT+TGG - Chr2:34430897-34430916 MsG0280008591.01.T01:intron 35.0%
AATATACTCAAGGAACCCAA+GGG + Chr2:34432922-34432941 None:intergenic 35.0%
AATCATTGCAAAATCCTGTC+TGG - Chr2:34433438-34433457 MsG0280008591.01.T01:intron 35.0%
AATTATGTATTCACTTGGGG+TGG + Chr2:34431176-34431195 None:intergenic 35.0%
ACAACACTTACACACTTCTA+GGG + Chr2:34432262-34432281 None:intergenic 35.0%
ACTGAACCGAACCAAAAAAT+TGG - Chr2:34432203-34432222 MsG0280008591.01.T01:intron 35.0%
ACTTTCTCTCAATGAAATGG+AGG + Chr2:34431886-34431905 None:intergenic 35.0%
AGCAACTCTTATAGAAAACC+TGG - Chr2:34431640-34431659 MsG0280008591.01.T01:intron 35.0%
ATATCGTGGATTTCTACAAC+AGG - Chr2:34433102-34433121 MsG0280008591.01.T01:intron 35.0%
ATTAAATCTGTGTCTGTGTG+AGG - Chr2:34431559-34431578 MsG0280008591.01.T01:intron 35.0%
CAAAATCCTGTCTGGAAATA+GGG - Chr2:34433446-34433465 MsG0280008591.01.T01:intron 35.0%
CAATACAGTTTGAAAGGATC+AGG + Chr2:34433389-34433408 None:intergenic 35.0%
CCCCAAGTGAATACATAATT+AGG - Chr2:34431176-34431195 MsG0280008591.01.T01:intron 35.0%
CTGAAGCAATACAGTTTGAA+AGG + Chr2:34433395-34433414 None:intergenic 35.0%
CTTTCAAACTGTATTGCTTC+AGG - Chr2:34433393-34433412 MsG0280008591.01.T01:intron 35.0%
GAACTTATTGGTAGATTCCA+GGG + Chr2:34433145-34433164 None:intergenic 35.0%
GAAGAAGATGAATTGGGATT+CGG + Chr2:34430468-34430487 None:intergenic 35.0%
TAATATACTCAAGGAACCCA+AGG + Chr2:34432923-34432942 None:intergenic 35.0%
TATCGTGGATTTCTACAACA+GGG - Chr2:34433103-34433122 MsG0280008591.01.T01:intron 35.0%
TCTACTTGAAGCAAGATTTG+AGG - Chr2:34431706-34431725 MsG0280008591.01.T01:CDS 35.0%
TGAACTTATTGGTAGATTCC+AGG + Chr2:34433146-34433165 None:intergenic 35.0%
TGTTAAAGCTATTGCTGATG+CGG - Chr2:34433516-34433535 MsG0280008591.01.T01:intron 35.0%
TGTTCAATACTTAAGTGGCT+TGG - Chr2:34433789-34433808 MsG0280008591.01.T01:CDS 35.0%
TGTTGTAGAAATCCACGATA+TGG + Chr2:34433103-34433122 None:intergenic 35.0%
TGTTTGCGTTAAGAAGTTAG+AGG + Chr2:34431143-34431162 None:intergenic 35.0%
TTAAATCTGTGTCTGTGTGA+GGG - Chr2:34431560-34431579 MsG0280008591.01.T01:intron 35.0%
TTCAACCACGAAAGATAAAG+AGG + Chr2:34430490-34430509 None:intergenic 35.0%
TTCTTCCTCTTTATCTTTCG+TGG - Chr2:34430482-34430501 MsG0280008591.01.T01:three_prime_UTR 35.0%
TTGCGTGTTAGTCAGAATAT+TGG - Chr2:34431413-34431432 MsG0280008591.01.T01:intron 35.0%
TTTGTAAATCCGGTTCAGTT+TGG + Chr2:34432149-34432168 None:intergenic 35.0%
! AGAGAGTGCAAAACTAATGA+AGG + Chr2:34431500-34431519 None:intergenic 35.0%
! CGCACAGTTAAGGATTATTT+TGG - Chr2:34431012-34431031 MsG0280008591.01.T01:intron 35.0%
! CTTTTAAGCAAGGAAGATTG+AGG + Chr2:34433316-34433335 None:intergenic 35.0%
! GGTTCAGTTTGGTTTAAAAC+TGG + Chr2:34432138-34432157 None:intergenic 35.0%
!! GTTTTTGAAGACCATTTGCT+TGG + Chr2:34433170-34433189 None:intergenic 35.0%
!! TGCACTCTTTCTTTGAAATC+TGG + Chr2:34432768-34432787 None:intergenic 35.0%
!! TGTTGCTAGAATTTGCTGAT+TGG - Chr2:34430684-34430703 MsG0280008591.01.T01:CDS 35.0%
!!! AATGCTGATTTTAGAACTCG+AGG + Chr2:34433555-34433574 None:intergenic 35.0%
!!! ATTCCAGGGGAGTTTTTTTA+AGG + Chr2:34433131-34433150 None:intergenic 35.0%
!!! GATTACTTCACGTTTTAGGA+TGG - Chr2:34432081-34432100 MsG0280008591.01.T01:intron 35.0%
ACTTACAATTGTAGGACCAG+AGG + Chr2:34432540-34432559 None:intergenic 40.0%
AGGGAAATGTGCAAGAATGA+AGG + Chr2:34430407-34430426 None:intergenic 40.0%
ATAAAAGGTTGTCCAGTAGC+AGG - Chr2:34431908-34431927 MsG0280008591.01.T01:intron 40.0%
CAACACTTACACACTTCTAG+GGG + Chr2:34432261-34432280 None:intergenic 40.0%
CCATGTTCGTATCAGAAAGA+AGG - Chr2:34430548-34430567 MsG0280008591.01.T01:three_prime_UTR 40.0%
CCTTCTTTCTGATACGAACA+TGG + Chr2:34430551-34430570 None:intergenic 40.0%
CTTTAACACGACCATGGTAT+GGG + Chr2:34433504-34433523 None:intergenic 40.0%
GAATCAAGTAATCCTGCTAC+TGG + Chr2:34431923-34431942 None:intergenic 40.0%
GAGTTGAGAAAACTAACACC+AGG + Chr2:34431661-34431680 None:intergenic 40.0%
GCAAAATCCTGTCTGGAAAT+AGG - Chr2:34433445-34433464 MsG0280008591.01.T01:intron 40.0%
GCAAGAACTCTTGTAAAAGG+TGG + Chr2:34433728-34433747 None:intergenic 40.0%
GTTCCTTAAAAAAACTCCCC+TGG - Chr2:34433125-34433144 MsG0280008591.01.T01:intron 40.0%
TCTGGAAATAGGGATCACAA+AGG - Chr2:34433456-34433475 MsG0280008591.01.T01:intron 40.0%
TGAAGCAAGTGTATGCATCT+TGG + Chr2:34432474-34432493 None:intergenic 40.0%
TGGAAGTGGAAAAGAACTTC+AGG + Chr2:34432973-34432992 None:intergenic 40.0%
TTGGAAGTTCGCTACATTGA+GGG + Chr2:34430816-34430835 None:intergenic 40.0%
TTGGACAAAGAGATGCTTGT+TGG + Chr2:34432438-34432457 None:intergenic 40.0%
TTGGCAGTTGCAACATGTTA+GGG - Chr2:34430916-34430935 MsG0280008591.01.T01:intron 40.0%
TTTGGAAGTTCGCTACATTG+AGG + Chr2:34430817-34430836 None:intergenic 40.0%
! ACTGACAATCTTGGTCTTTC+GGG + Chr2:34432407-34432426 None:intergenic 40.0%
! AGTAAAGAAGCGCACAGTTA+AGG - Chr2:34431002-34431021 MsG0280008591.01.T01:intron 40.0%
! CAAAGAGATGCTTGTTGGAT+CGG + Chr2:34432433-34432452 None:intergenic 40.0%
! CCTTTGTTCAGGTTAGAACT+AGG - Chr2:34431116-34431135 MsG0280008591.01.T01:intron 40.0%
! GACTGACAATCTTGGTCTTT+CGG + Chr2:34432408-34432427 None:intergenic 40.0%
!! CAATAGCTTTAACACGACCA+TGG + Chr2:34433510-34433529 None:intergenic 40.0%
!! CCTAGTTCTAACCTGAACAA+AGG + Chr2:34431119-34431138 None:intergenic 40.0%
AACAGTGAAGAGGAGGAAGA+AGG + Chr2:34430432-34430451 None:intergenic 45.0%
AACTGTGAACAGTGAAGAGG+AGG + Chr2:34430439-34430458 None:intergenic 45.0%
ACAAAGGAAGATAGAGGAGC+AGG - Chr2:34432052-34432071 MsG0280008591.01.T01:intron 45.0%
ACAAAGGTAGCCTTTGACAG+AGG - Chr2:34433472-34433491 MsG0280008591.01.T01:intron 45.0%
ACACAACACTGAGTCCAATC+TGG + Chr2:34432607-34432626 None:intergenic 45.0%
ACAGTGAAGAGGAGGAAGAA+GGG + Chr2:34430431-34430450 None:intergenic 45.0%
CTACATTGAGGGGACTATTG+TGG + Chr2:34430805-34430824 None:intergenic 45.0%
GAAGAGTTGAACTTCACCTC+TGG - Chr2:34432521-34432540 MsG0280008591.01.T01:intron 45.0%
GAGAAACGTAACAGCGTATC+AGG + Chr2:34432564-34432583 None:intergenic 45.0%
GATCGGAAGACTGACAATCT+TGG + Chr2:34432416-34432435 None:intergenic 45.0%
GATGGCAGATATGATCACGA+GGG - Chr2:34432737-34432756 MsG0280008591.01.T01:intron 45.0%
GCTTCAGGAAGTAGCAAAGA+GGG - Chr2:34433408-34433427 MsG0280008591.01.T01:intron 45.0%
GCTTTAACACGACCATGGTA+TGG + Chr2:34433505-34433524 None:intergenic 45.0%
GTTGGCAGTTGCAACATGTT+AGG - Chr2:34430915-34430934 MsG0280008591.01.T01:intron 45.0%
TGATGGCAGATATGATCACG+AGG - Chr2:34432736-34432755 MsG0280008591.01.T01:intron 45.0%
TGCTTCAGGAAGTAGCAAAG+AGG - Chr2:34433407-34433426 MsG0280008591.01.T01:intron 45.0%
TGGAACTGTGAACAGTGAAG+AGG + Chr2:34430442-34430461 None:intergenic 45.0%
TGGAAGTTCGCTACATTGAG+GGG + Chr2:34430815-34430834 None:intergenic 45.0%
TGTGATCCCTATTTCCAGAC+AGG + Chr2:34433455-34433474 None:intergenic 45.0%
TTCAGCTTCGACAATGCAGA+AGG - Chr2:34432490-34432509 MsG0280008591.01.T01:intron 45.0%
! TGGGGTGCTTAAAACGCAAA+TGG - Chr2:34433754-34433773 MsG0280008591.01.T01:CDS 45.0%
!! TCTTGGTGTCGTCAATCACT+TGG + Chr2:34432457-34432476 None:intergenic 45.0%
!! AATATATTAGTTATTATAAT+TGG + Chr2:34432993-34433012 None:intergenic 5.0%
AAGCCAAAGCCACTACTCGA+AGG - Chr2:34430508-34430527 MsG0280008591.01.T01:three_prime_UTR 50.0%
AAGGTAGCCTTTGACAGAGG+TGG - Chr2:34433475-34433494 MsG0280008591.01.T01:intron 50.0%
AGAGGTGGTTACCCATACCA+TGG - Chr2:34433490-34433509 MsG0280008591.01.T01:intron 50.0%
AGCCAAAGCCACTACTCGAA+GGG - Chr2:34430509-34430528 MsG0280008591.01.T01:three_prime_UTR 50.0%
ATGGAGAAGGAGGAACCCTT+GGG - Chr2:34432904-34432923 MsG0280008591.01.T01:intron 50.0%
CAGGAAGTAGCAAAGAGGGT+GGG - Chr2:34433412-34433431 MsG0280008591.01.T01:intron 50.0%
CAGTGAAGAGGAGGAAGAAG+GGG + Chr2:34430430-34430449 None:intergenic 50.0%
GATGAATTGGGATTCGGCGT+TGG + Chr2:34430462-34430481 None:intergenic 50.0%
TCAGGAAGTAGCAAAGAGGG+TGG - Chr2:34433411-34433430 MsG0280008591.01.T01:intron 50.0%
TCTGTCTTCCCTTCGAGTAG+TGG + Chr2:34430520-34430539 None:intergenic 50.0%
TGGGTAACCACCTCTGTCAA+AGG + Chr2:34433485-34433504 None:intergenic 50.0%
TTCCCTTCGAGTAGTGGCTT+TGG + Chr2:34430514-34430533 None:intergenic 50.0%
!! GCATTGACTCGAAAGCACAG+TGG - Chr2:34433074-34433093 MsG0280008591.01.T01:intron 50.0%
CATGGAGAAGGAGGAACCCT+TGG - Chr2:34432903-34432922 MsG0280008591.01.T01:intron 55.0%
GAAGAGGAGGAAGAAGGGGA+GGG + Chr2:34430426-34430445 None:intergenic 55.0%
GCACAGTGGCTACCATATCG+TGG - Chr2:34433088-34433107 MsG0280008591.01.T01:intron 55.0%
TGAAGAGGAGGAAGAAGGGG+AGG + Chr2:34430427-34430446 None:intergenic 55.0%
! CACACTTCTAGGGGTGTGCA+TGG + Chr2:34432252-34432271 None:intergenic 55.0%
GCTGATGCGGCACGCGAACA+TGG - Chr2:34433529-34433548 MsG0280008591.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 34430381 34433828 34430381 ID=MsG0280008591.01;Name=MsG0280008591.01
Chr2 mRNA 34430381 34433828 34430381 ID=MsG0280008591.01.T01;Parent=MsG0280008591.01;Name=MsG0280008591.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0.5|0.66|1|0.5|0.66|3|264|174
Chr2 exon 34430381 34430794 34430381 ID=MsG0280008591.01.T01:exon:20403;Parent=MsG0280008591.01.T01
Chr2 exon 34431656 34431817 34431656 ID=MsG0280008591.01.T01:exon:20402;Parent=MsG0280008591.01.T01
Chr2 exon 34433616 34433828 34433616 ID=MsG0280008591.01.T01:exon:20401;Parent=MsG0280008591.01.T01
Chr2 CDS 34433616 34433828 34433616 ID=MsG0280008591.01.T01:cds;Parent=MsG0280008591.01.T01
Chr2 CDS 34431656 34431817 34431656 ID=MsG0280008591.01.T01:cds;Parent=MsG0280008591.01.T01
Chr2 CDS 34430645 34430794 34430645 ID=MsG0280008591.01.T01:cds;Parent=MsG0280008591.01.T01
Chr2 three_prime_UTR 34430381 34430644 34430381 ID=MsG0280008591.01.T01:three_prime_utr;Parent=MsG0280008591.01.T01
Gene Sequence

>MsG0280008591.01.T01

ATGTTAACTTCTTCGCTCTCATTCCTTCATTCTTGCACATTTCCCTCCCCTTCTTCCTCCTCTTCACTGTTCACAGTTCCAACGCCGAATCCCAATTCATCTTCTTCCTCTTTATCTTTCGTGGTTGAAGCCAAAGCCACTACTCGAAGGGAAGACAGAACTGCTCGCCATGTTCGTATCAGAAAGAAGGTAAACTCATTCATCATTCTTACCGTTGAAGGAACACCCGAAAGACCAAGATTGTCAGTCTTCCGATCCAACAAGCATCTCTTTGTCCAAGTGATTGACGACACCAAGATGCATACACTTGCTTCAGCTTCGACAATGCAGAAGGCAATTGCTGAAGAGTTGAACTTCACCTCTGGTCCTACAATTGAAGTAGCAAAGAGGGTGGGTGAAATCATTGCAAAATCCTGTCTGGAAATAGGGATCACAAAGGTAGCCTTTGACAGAGGTGGTTACCCATACCATGGTCGTGTTAAAGCTATTGCTGATGCGGCACGCGAACATGGCCTCGAGTTCTAA

Protein sequence

>MsG0280008591.01.T01

MLTSSLSFLHSCTFPSPSSSSSLFTVPTPNPNSSSSSLSFVVEAKATTRREDRTARHVRIRKKVNSFIILTVEGTPERPRLSVFRSNKHLFVQVIDDTKMHTLASASTMQKAIAEELNFTSGPTIEVAKRVGEIIAKSCLEIGITKVAFDRGGYPYHGRVKAIADAAREHGLEF*