AlfalfaGEDB | MsG0680032459.01

M. sativa cultivar ZhongmuNo.1 / MsG0680032459.01

KEGG: K02964
GO: GO:0003676 GO:0003723 GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF00416

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680032459.01.T01	XP_013452021.1	84.868	152	20	1	33	181	1	152	2.26E-86	260

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680032459.01.T01	P34788	76.974	152	32	1	33	181	1	152	4.63E-83	245

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680032459.01.T01	G7IEW7	84.868	152	20	1	33	181	1	152	1.08e-86	260

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048922.01	MsG0680032459.01	0.835247	1.875539e-56	2.280596e-53
MsG0180000118.01	MsG0680032459.01	0.805807	1.116937e-49	5.965585e-47
MsG0180001169.01	MsG0680032459.01	0.847972	8.242682e-60	1.490102e-56
MsG0180002738.01	MsG0680032459.01	0.885388	8.487792e-72	5.815479e-68
MsG0180003585.01	MsG0680032459.01	0.921803	2.237668e-88	8.166353e-84
MsG0180003623.01	MsG0680032459.01	0.844200	8.758575e-59	1.403574e-55
MsG0180003897.01	MsG0680032459.01	0.856387	3.330774e-62	7.936850e-59
MsG0180004503.01	MsG0680032459.01	0.850957	1.213178e-60	2.417288e-57
MsG0180005384.01	MsG0680032459.01	0.819153	1.348446e-52	1.029439e-49
MsG0180005573.01	MsG0680032459.01	0.827128	1.856023e-54	1.775601e-51
MsG0180005789.01	MsG0680032459.01	0.814864	1.240098e-51	8.416687e-49
MsG0280006301.01	MsG0680032459.01	0.913904	3.581617e-84	8.665677e-80
MsG0380014507.01	MsG0680032459.01	0.820837	5.553389e-53	4.443225e-50
MsG0680031368.01	MsG0680032459.01	0.885007	1.178504e-71	7.954205e-68
MsG0680032459.01	MsG0680035611.01	0.823220	1.557349e-53	1.332671e-50
MsG0680032459.01	MsG0780036859.01	0.827287	1.700521e-54	1.634535e-51
MsG0680032459.01	MsG0780041240.01	0.832323	1.009101e-55	1.123925e-52
MsG0680032459.01	MsG0780041244.01	0.820184	7.845018e-53	6.163996e-50
MsG0680032459.01	MsG0780041311.01	0.839369	1.651412e-57	2.275810e-54
MsG0680032459.01	MsG0780041461.01	0.804389	2.211873e-49	1.138982e-46
MsG0680032459.01	MsG0780041522.01	0.865438	5.903664e-65	1.920708e-61
MsG0680032459.01	MsG0780041790.01	0.847238	1.312292e-59	2.317582e-56
MsG0680032459.01	MsG0880042517.01	0.852141	5.608140e-61	1.160808e-57
MsG0680032459.01	MsG0880042896.01	0.827089	1.896387e-54	1.812227e-51
MsG0680032459.01	MsG0880043076.01	0.918149	2.223836e-86	6.670012e-82
MsG0680032459.01	MsG0880044204.01	0.889329	2.671141e-73	2.145432e-69
MsG0680032459.01	MsG0880045836.01	0.804978	1.666183e-49	8.711772e-47
MsG0680032459.01	MsG0880046243.01	0.854486	1.192050e-61	2.666445e-58
MsG0680032459.01	MsG0880046486.01	0.808361	3.216397e-50	1.835445e-47
MsG0680032459.01	MsG0880046760.01	0.863294	2.759634e-64	8.324459e-61
MsG0680032459.01	MsG0880047310.01	0.841740	3.954867e-58	5.865563e-55
MsG0480020796.01	MsG0680032459.01	0.872096	4.134680e-67	1.708060e-63
MsG0480020911.01	MsG0680032459.01	0.853443	2.381241e-61	5.146211e-58
MsG0480021279.01	MsG0680032459.01	0.849487	3.132793e-60	5.948199e-57
MsG0480021288.01	MsG0680032459.01	0.812900	3.358984e-51	2.161842e-48
MsG0480021417.01	MsG0680032459.01	0.896149	4.866085e-76	5.199614e-72
MsG0480022006.01	MsG0680032459.01	0.857829	1.250324e-62	3.126522e-59
MsG0480022086.01	MsG0680032459.01	0.817486	3.216752e-52	2.345758e-49
MsG0480022363.01	MsG0680032459.01	0.862346	5.407222e-64	1.578398e-60
MsG0480022955.01	MsG0680032459.01	0.871417	6.944210e-67	2.799374e-63
MsG0480023050.01	MsG0680032459.01	0.803741	3.015819e-49	1.527386e-46
MsG0480023380.01	MsG0680032459.01	0.870593	1.297582e-66	5.075529e-63
MsG0480023774.01	MsG0680032459.01	0.840599	7.889686e-58	1.129415e-54
MsG0480023931.01	MsG0680032459.01	0.873128	1.869464e-67	8.022986e-64
MsG0480023996.01	MsG0680032459.01	0.895581	8.366135e-76	8.733920e-72
MsG0580024540.01	MsG0680032459.01	0.838912	2.169485e-57	2.947876e-54
MsG0580024738.01	MsG0680032459.01	0.904053	1.832813e-79	2.785283e-75
MsG0580024894.01	MsG0680032459.01	0.904102	1.741487e-79	2.652784e-75
MsG0580025750.01	MsG0680032459.01	0.856917	2.326672e-62	5.642103e-59
MsG0380015446.01	MsG0680032459.01	0.836879	7.224287e-57	9.226211e-54
MsG0380015857.01	MsG0680032459.01	0.856185	3.816247e-62	9.031786e-59
MsG0380016678.01	MsG0680032459.01	0.879309	1.384623e-69	7.471026e-66
MsG0380016732.01	MsG0680032459.01	0.825195	5.351134e-54	4.844077e-51
MsG0380016744.01	MsG0680032459.01	0.890359	1.057880e-73	8.866124e-70
MsG0380016760.01	MsG0680032459.01	0.860743	1.669377e-63	4.611532e-60
MsG0380016805.01	MsG0680032459.01	0.865760	4.675690e-65	1.538701e-61
MsG0380017119.01	MsG0680032459.01	0.809738	1.631537e-50	9.656130e-48
MsG0380017516.01	MsG0680032459.01	0.857984	1.124689e-62	2.827150e-59
MsG0380018056.01	MsG0680032459.01	0.813943	1.981561e-51	1.311802e-48
MsG0480018164.01	MsG0680032459.01	0.822374	2.451614e-53	2.048408e-50
MsG0580026749.01	MsG0680032459.01	0.813473	2.514562e-51	1.643731e-48
MsG0580029047.01	MsG0680032459.01	0.849978	2.285590e-60	4.409978e-57
MsG0580029168.01	MsG0680032459.01	0.802702	4.948469e-49	2.440416e-46
MsG0280006629.01	MsG0680032459.01	0.830778	2.424383e-55	2.579978e-52
MsG0280006747.01	MsG0680032459.01	0.841334	5.062114e-58	7.413314e-55
MsG0280007055.01	MsG0680032459.01	0.842438	2.585163e-58	3.920235e-55
MsG0280007084.01	MsG0680032459.01	0.812288	4.571629e-51	2.895103e-48
MsG0280007606.01	MsG0680032459.01	0.856154	3.898175e-62	9.215866e-59
MsG0280010232.01	MsG0680032459.01	0.858155	1.000272e-62	2.528697e-59
MsG0280010519.01	MsG0680032459.01	0.845214	4.669445e-59	7.725823e-56

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680032459.01.T01	MTR_6g043210	84.868	152	20	1	33	181	1	152	2.74e-90	260
MsG0680032459.01.T01	MTR_1g098170	83.553	152	22	1	33	181	1	152	2.83e-89	258
MsG0680032459.01.T01	MTR_1g098220	83.553	152	22	1	33	181	1	152	2.83e-89	258
MsG0680032459.01.T01	MTR_1g492710	82.192	146	23	1	33	175	794	939	8.50e-77	248
MsG0680032459.01.T01	MTR_1g098220	95.789	95	4	0	33	127	1	95	2.52e-64	194
MsG0680032459.01.T01	MTR_5g027650	72.549	102	25	1	71	169	11	112	7.01e-48	152
MsG0680032459.01.T01	MTR_5g027580	72.549	102	25	1	71	169	48	149	6.93e-47	150
MsG0680032459.01.T01	MTR_5g027670	66.667	93	20	2	84	169	1	89	1.52e-36	122
MsG0680032459.01.T01	MTR_5g027615	67.416	89	26	1	84	169	1	89	1.53e-35	120
MsG0680032459.01.T01	MTR_5g027605	67.416	89	26	1	84	169	1	89	1.53e-35	120
MsG0680032459.01.T01	MTR_5g027640	67.416	89	26	1	84	169	1	89	1.53e-35	120
MsG0680032459.01.T01	MTR_5g027600	67.416	89	26	1	84	169	1	89	1.53e-35	120
MsG0680032459.01.T01	MTR_1005s0010	65.556	90	20	2	87	169	2	87	3.49e-34	116
MsG0680032459.01.T01	MTR_4g015960	45.070	71	35	1	100	166	10	80	3.26e-12	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680032459.01.T01	AT4G09800	76.974	152	32	1	33	181	1	152	4.72e-84	245
MsG0680032459.01.T01	AT1G34030	76.974	152	32	1	33	181	1	152	4.72e-84	245
MsG0680032459.01.T01	AT1G22780	76.974	152	32	1	33	181	1	152	4.72e-84	245

Find 49 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGACGTATCCGGGGAATAT+CGG	0.286329	6:-41812237	None:intergenic
CTCAAGTTGTTCAAATCAAC+TGG	0.313030	6:+41814031	MsG0680032459.01.T01:CDS
GGACGTATCCGGGGAATATC+GGG	0.393411	6:-41812236	None:intergenic
ACCGAGGTTTGAGACATTAC+TGG	0.395796	6:+41815149	MsG0680032459.01.T01:CDS
ATGACTTCAATCAAAGGTAT+TGG	0.407492	6:+41812988	MsG0680032459.01.T01:CDS
TACTTCAATTTCAATTATGC+AGG	0.416780	6:+41815122	MsG0680032459.01.T01:CDS
GCTCCTTCCAAGGACGTATC+CGG	0.419113	6:-41812247	None:intergenic
TGGAAGGAGCTCCTTGCCAC+TGG	0.420822	6:+41812260	MsG0680032459.01.T01:CDS
GGCAATTCAAGGTCCCTGAT+TGG	0.439048	6:+41813969	MsG0680032459.01.T01:CDS
TTCCCAAGGGGAACAACGCT+TGG	0.443668	6:-41812208	None:intergenic
CCGAGGTTTGAGACATTACT+GGG	0.449031	6:+41815150	MsG0680032459.01.T01:CDS
AACCAAGCGTTGTTCCCCTT+GGG	0.449211	6:+41812206	MsG0680032459.01.T01:CDS
TTGACAATAACCAAGTTGCT+TGG	0.450564	6:-41812284	None:intergenic
TGACAATAACCAAGTTGCTT+GGG	0.457147	6:-41812283	None:intergenic
TAACCAAGCGTTGTTCCCCT+TGG	0.457186	6:+41812205	MsG0680032459.01.T01:CDS
CTCCTTCCAAGGACGTATCC+GGG	0.457403	6:-41812246	None:intergenic
ATATTCCCCGGATACGTCCT+TGG	0.488450	6:+41812240	MsG0680032459.01.T01:CDS
TACTGGGGTCTCCGTGTTCG+CGG	0.490564	6:+41815166	MsG0680032459.01.T01:CDS
TGGTGTGCTGTCCGCGAACA+CGG	0.498040	6:-41815177	None:intergenic
GTGTTGAATACCAACGTTGA+TGG	0.503977	6:+41812943	MsG0680032459.01.T01:CDS
TGCCACTGGCCCAAGCAACT+TGG	0.507110	6:+41812274	MsG0680032459.01.T01:CDS
TGCGAACCCTAGGCAATTCA+AGG	0.508041	6:+41813958	MsG0680032459.01.T01:CDS
TCCTCTACGACCAGTAGTCT+TGG	0.513650	6:-41815197	None:intergenic
GAACAGAAAGAAGGATTACA+AGG	0.525479	6:+41813997	MsG0680032459.01.T01:CDS
GGACAGCACACCAAGACTAC+TGG	0.527200	6:+41815187	MsG0680032459.01.T01:CDS
AGTTGCTTGGGCCAGTGGCA+AGG	0.538347	6:-41812271	None:intergenic
TGACTGTGGTTGCGAACCCT+AGG	0.543992	6:+41813948	MsG0680032459.01.T01:CDS
TGAATTGACTGCTGCCGAGT+TGG	0.546579	6:+41813916	MsG0680032459.01.T01:CDS
AACCAAGTTGCTTGGGCCAG+TGG	0.553848	6:-41812276	None:intergenic
CCCAGTAATGTCTCAAACCT+CGG	0.554125	6:-41815150	None:intergenic
TCAGGGACCTTGAATTGCCT+AGG	0.557398	6:-41813965	None:intergenic
AGAAAGAAGGATTACAAGGA+TGG	0.565673	6:+41814001	MsG0680032459.01.T01:CDS
GTGGCAAGGAGCTCCTTCCA+AGG	0.568787	6:-41812257	None:intergenic
AATATCGGGTTCGATTCCCA+AGG	0.574761	6:-41812222	None:intergenic
CTTCTGCTTTCCATCAACGT+TGG	0.575809	6:-41812953	None:intergenic
CAGGGACCTTGAATTGCCTA+GGG	0.576444	6:-41813964	None:intergenic
TCCCCGGATACGTCCTTGGA+AGG	0.579999	6:+41812244	MsG0680032459.01.T01:CDS
CTGATGTTGACATGAACAAG+AGG	0.608795	6:+41813043	MsG0680032459.01.T01:CDS
TTTGCTATGACTTCAATCAA+AGG	0.610699	6:+41812982	MsG0680032459.01.T01:CDS
GAATCGAACCCGATATTCCC+CGG	0.615106	6:+41812228	MsG0680032459.01.T01:CDS
ATATCGGGTTCGATTCCCAA+GGG	0.621773	6:-41812221	None:intergenic
AGTCATAATGTTCTCCAACT+CGG	0.622426	6:-41813930	None:intergenic
TCCTTCCAAGGACGTATCCG+GGG	0.637539	6:-41812245	None:intergenic
ACCAAGACTACTGGTCGTAG+AGG	0.645367	6:+41815196	MsG0680032459.01.T01:CDS
GGTCGTAGAGGAAAGACTGT+CGG	0.671409	6:+41815208	MsG0680032459.01.T01:CDS
CAATTATGCAGGAATCACCG+AGG	0.718828	6:+41815133	MsG0680032459.01.T01:CDS
GTTGGAGAACATTATGACTG+TGG	0.726330	6:+41813934	MsG0680032459.01.T01:CDS
TATCGGGTTCGATTCCCAAG+GGG	0.729708	6:-41812220	None:intergenic
CGAGGTTTGAGACATTACTG+GGG	0.796352	6:+41815151	MsG0680032459.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTCTACAAATTTTTTTA+GGG	+	Chr6:41812846-41812865	MsG0680032459.01.T01:intron	10.0%
!!!	GTAACTTTTTTTTTTTTTTT+AGG	-	Chr6:41812575-41812594	None:intergenic	10.0%
!!!	TTATAATTTCATTTTTACTT+AGG	+	Chr6:41813351-41813370	MsG0680032459.01.T01:intron	10.0%
!!!	TTTTTTTATTGACTTAAATA+AGG	-	Chr6:41812485-41812504	None:intergenic	10.0%
!!	CTAAAAAAATTTGTAGAAAA+TGG	-	Chr6:41812847-41812866	None:intergenic	15.0%
!!	TAATTAGTTAAGTGATTATT+TGG	+	Chr6:41813866-41813885	MsG0680032459.01.T01:intron	15.0%
!!	TTCGTTATTATAATATGAAA+AGG	-	Chr6:41814529-41814548	None:intergenic	15.0%
!!!	AATTTTTTTAGGGATTTTTT+TGG	+	Chr6:41812856-41812875	MsG0680032459.01.T01:intron	15.0%
!!!	AGGTTTCATATTTTAAAAAT+GGG	-	Chr6:41812461-41812480	None:intergenic	15.0%
!!!	ATTCGTATTTTTAATGAAAT+TGG	+	Chr6:41813231-41813250	MsG0680032459.01.T01:intron	15.0%
!!!	CATTTTCTACAAATTTTTTT+AGG	+	Chr6:41812845-41812864	MsG0680032459.01.T01:intron	15.0%
!!!	TAGGTTTCATATTTTAAAAA+TGG	-	Chr6:41812462-41812481	None:intergenic	15.0%
!!!	TTTTATGATTTATACTGTAA+TGG	+	Chr6:41813153-41813172	MsG0680032459.01.T01:intron	15.0%
!!!	TTTTTTTTTTTTTTAGGAAG+TGG	-	Chr6:41812569-41812588	None:intergenic	15.0%
!!	TTCATGATTTATACTGTAAT+GGG	+	Chr6:41813277-41813296	MsG0680032459.01.T01:intron	20.0%
!!	TTTCATGATTTATACTGTAA+TGG	+	Chr6:41813276-41813295	MsG0680032459.01.T01:intron	20.0%
!!!	ACAATAATAATTTTGGCAAA+CGG	+	Chr6:41814776-41814795	MsG0680032459.01.T01:intron	20.0%
!!!	AGTTAGTCTACTTATTATTA+GGG	-	Chr6:41812688-41812707	None:intergenic	20.0%
!!!	ATTTTTAATGAAATTGGTAG+TGG	+	Chr6:41813237-41813256	MsG0680032459.01.T01:intron	20.0%
!!!	CAAGTTTATAATTAGTTTAG+TGG	+	Chr6:41813313-41813332	MsG0680032459.01.T01:intron	20.0%
!!!	GAAACAAAAAATGTTGATTA+AGG	-	Chr6:41814721-41814740	None:intergenic	20.0%
!!!	GTCAATTTATTTTTAGCAAA+TGG	+	Chr6:41812302-41812321	MsG0680032459.01.T01:intron	20.0%
!!!	GTTTTTTATGTTGTTTAACT+AGG	+	Chr6:41813799-41813818	MsG0680032459.01.T01:intron	20.0%
!!!	TTTATTGACTTAAATAAGGT+AGG	-	Chr6:41812481-41812500	None:intergenic	20.0%
!!!	TTTTTATAAGTTTTCCAAGA+TGG	+	Chr6:41813475-41813494	MsG0680032459.01.T01:intron	20.0%
!!!	TTTTTTGTTGTTGGTAAATT+AGG	+	Chr6:41813390-41813409	MsG0680032459.01.T01:intron	20.0%
!	AGATTTAAACTGACACTTAT+AGG	-	Chr6:41814961-41814980	None:intergenic	25.0%
!	ATATAAGCATCATGATGAAA+TGG	+	Chr6:41814572-41814591	MsG0680032459.01.T01:intron	25.0%
!	ATTGAGATTGTTGAAGAAAA+TGG	-	Chr6:41812817-41812836	None:intergenic	25.0%
!	GATTTAAACTGACACTTATA+GGG	-	Chr6:41814960-41814979	None:intergenic	25.0%
!	TACTTCAATTTCAATTATGC+AGG	+	Chr6:41815122-41815141	MsG0680032459.01.T01:CDS	25.0%
!	TGTATACATTCAATCACTAT+TGG	-	Chr6:41814849-41814868	None:intergenic	25.0%
!	TTCATGATTTATGCTGAAAT+GGG	+	Chr6:41813824-41813843	MsG0680032459.01.T01:intron	25.0%
!	TTTCATGATTTATGCTGAAA+TGG	+	Chr6:41813823-41813842	MsG0680032459.01.T01:intron	25.0%
!!	AAAACTTTTGTTGATGCTAT+TGG	+	Chr6:41814493-41814512	MsG0680032459.01.T01:intron	25.0%
!!	CTACTTATTATTAGGGTTTT+CGG	-	Chr6:41812681-41812700	None:intergenic	25.0%
!!	GAGTTAGTCTACTTATTATT+AGG	-	Chr6:41812689-41812708	None:intergenic	25.0%
!!	TACTTATTATTAGGGTTTTC+GGG	-	Chr6:41812680-41812699	None:intergenic	25.0%
!!	TTTCAACACACTCTTTTATT+AGG	+	Chr6:41812342-41812361	MsG0680032459.01.T01:intron	25.0%
!!!	GTCAATTTGTTTTTAGCAAA+TGG	+	Chr6:41812393-41812412	MsG0680032459.01.T01:intron	25.0%
!!!	TAAGTTTTGTTGGTGTATTT+TGG	+	Chr6:41814915-41814934	MsG0680032459.01.T01:intron	25.0%
!!!	TACAATGAGTTTTTTGTTGT+TGG	+	Chr6:41813381-41813400	MsG0680032459.01.T01:intron	25.0%
!!!	TTGTTATTTGTTTACGTCTT+TGG	+	Chr6:41814470-41814489	MsG0680032459.01.T01:intron	25.0%
!!!	TTTTTGTTTCATTAGACAGA+TGG	+	Chr6:41814731-41814750	MsG0680032459.01.T01:intron	25.0%
	AACTCTTTCACATTCACATT+AGG	-	Chr6:41814449-41814468	None:intergenic	30.0%
	AAGAAAATGGATATGTACCA+TGG	-	Chr6:41812804-41812823	None:intergenic	30.0%
	AAGATCCTTCCATTCAAAAT+GGG	-	Chr6:41812373-41812392	None:intergenic	30.0%
	AATTGTCATTCTATACGGTT+TGG	+	Chr6:41814207-41814226	MsG0680032459.01.T01:intron	30.0%
	ACACGATTGTTTGATTGTTA+AGG	+	Chr6:41814668-41814687	MsG0680032459.01.T01:intron	30.0%
	ATCACTGATGATAAATGCTT+AGG	-	Chr6:41813703-41813722	None:intergenic	30.0%
	CAAAACATAAACTACAGATG+TGG	-	Chr6:41814826-41814845	None:intergenic	30.0%
	CTACCAACAAAATTGAAGAA+TGG	-	Chr6:41814991-41815010	None:intergenic	30.0%
	GAGCTAATTGTCATTCTATA+CGG	+	Chr6:41814202-41814221	MsG0680032459.01.T01:intron	30.0%
	GATTAAGGAAAGAAAGTTGA+GGG	-	Chr6:41814706-41814725	None:intergenic	30.0%
	TGACAATAAAACAAAACGAC+AGG	-	Chr6:41815084-41815103	None:intergenic	30.0%
	TGATTAAGGAAAGAAAGTTG+AGG	-	Chr6:41814707-41814726	None:intergenic	30.0%
	TTCTGTTCAAAAACCAATCA+GGG	-	Chr6:41813985-41814004	None:intergenic	30.0%
	TTTCTGTTCAAAAACCAATC+AGG	-	Chr6:41813986-41814005	None:intergenic	30.0%
!	AAAATGGGTTTCATTCAAAC+TGG	-	Chr6:41812446-41812465	None:intergenic	30.0%
!	ATGACTTCAATCAAAGGTAT+TGG	+	Chr6:41812988-41813007	MsG0680032459.01.T01:CDS	30.0%
!	CAACCATTCTTCAATTTTGT+TGG	+	Chr6:41814985-41815004	MsG0680032459.01.T01:intron	30.0%
!	CACGTGCACAATAATAATTT+TGG	+	Chr6:41814769-41814788	MsG0680032459.01.T01:intron	30.0%
!	TTGTTGGTAAATTAGGCTTA+GGG	+	Chr6:41813397-41813416	MsG0680032459.01.T01:intron	30.0%
!	TTTGCTATGACTTCAATCAA+AGG	+	Chr6:41812982-41813001	MsG0680032459.01.T01:CDS	30.0%
!!	CTATGAGATGATTTTGTTTG+TGG	-	Chr6:41812597-41812616	None:intergenic	30.0%
!!	TTGGTTTTTGAACAGAAAGA+AGG	+	Chr6:41813988-41814007	MsG0680032459.01.T01:CDS	30.0%
!!!	GTTGGTAGTTAAGTTTGTTT+TGG	+	Chr6:41815003-41815022	MsG0680032459.01.T01:intron	30.0%
	AAACGGAAGTTATTGAGTGT+TGG	+	Chr6:41814793-41814812	MsG0680032459.01.T01:intron	35.0%
	AAACTTAGCCTAACTGTGAT+GGG	+	Chr6:41813754-41813773	MsG0680032459.01.T01:intron	35.0%
	AAAGTAAACCCATCACAGTT+AGG	-	Chr6:41813765-41813784	None:intergenic	35.0%
	AGAAAGAAGGATTACAAGGA+TGG	+	Chr6:41814001-41814020	MsG0680032459.01.T01:CDS	35.0%
	AGTCATAATGTTCTCCAACT+CGG	-	Chr6:41813933-41813952	None:intergenic	35.0%
	ATGATGAAATGGTACTTCTC+AGG	+	Chr6:41814583-41814602	MsG0680032459.01.T01:intron	35.0%
	CAAGATCCTTCCATTCAAAA+TGG	-	Chr6:41812374-41812393	None:intergenic	35.0%
	CCAGACACGTTTAATTAGTA+TGG	-	Chr6:41814611-41814630	None:intergenic	35.0%
	CCATACTAATTAAACGTGTC+TGG	+	Chr6:41814608-41814627	MsG0680032459.01.T01:intron	35.0%
	GAACAGAAAGAAGGATTACA+AGG	+	Chr6:41813997-41814016	MsG0680032459.01.T01:CDS	35.0%
	GAATGAATTGTTTGCCTAAC+TGG	+	Chr6:41814546-41814565	MsG0680032459.01.T01:intron	35.0%
	TAAACTGACACTTATAGGGT+GGG	-	Chr6:41814956-41814975	None:intergenic	35.0%
	TGACAATAACCAAGTTGCTT+GGG	-	Chr6:41812286-41812305	None:intergenic	35.0%
	TTAAACTGACACTTATAGGG+TGG	-	Chr6:41814957-41814976	None:intergenic	35.0%
	TTGACAATAACCAAGTTGCT+TGG	-	Chr6:41812287-41812306	None:intergenic	35.0%
	TTGCATGTTTCTCGTTTGTT+CGG	+	Chr6:41814252-41814271	MsG0680032459.01.T01:intron	35.0%
	TTGGAAATTGTCTGTTGAGA+TGG	+	Chr6:41815022-41815041	MsG0680032459.01.T01:intron	35.0%
!	AGCTGTTTCATAAGCTATCT+TGG	-	Chr6:41813635-41813654	None:intergenic	35.0%
!	CTCAAGTTGTTCAAATCAAC+TGG	+	Chr6:41814031-41814050	MsG0680032459.01.T01:CDS	35.0%
!	CTTTCTTGTGTGTTGTTGAA+AGG	-	Chr6:41812711-41812730	None:intergenic	35.0%
!	GTTGTTGGTAAATTAGGCTT+AGG	+	Chr6:41813396-41813415	MsG0680032459.01.T01:intron	35.0%
!	TAGGTGAAACCCATTTTGAA+TGG	+	Chr6:41812361-41812380	MsG0680032459.01.T01:intron	35.0%
!	TGAAACCCATTTTGAATGGA+AGG	+	Chr6:41812365-41812384	MsG0680032459.01.T01:intron	35.0%
!!	TAACTGTGATGGGTTTACTT+TGG	+	Chr6:41813764-41813783	MsG0680032459.01.T01:intron	35.0%
!!!	GCATTCGTTTTGATTTTCGT+TGG	+	Chr6:41814311-41814330	MsG0680032459.01.T01:intron	35.0%
!!!	TCTGTTTTGATTTTCAGAGC+TGG	+	Chr6:41813893-41813912	MsG0680032459.01.T01:intron	35.0%
	AACCTCCACGTAACAATTCA+GGG	+	Chr6:41812629-41812648	MsG0680032459.01.T01:intron	40.0%
	AAGGAAAGAAAGTTGAGGGA+GGG	-	Chr6:41814702-41814721	None:intergenic	40.0%
	AATTAGGCTTAGGGACTGTT+TGG	+	Chr6:41813406-41813425	MsG0680032459.01.T01:intron	40.0%
	ACCAACAAAACTTACTCCAC+AGG	-	Chr6:41814909-41814928	None:intergenic	40.0%
	ATCAACTGGACATGAAGTTG+AGG	+	Chr6:41814045-41814064	MsG0680032459.01.T01:intron	40.0%
	ATGGGTTTCATTCAAACTGG+TGG	-	Chr6:41812443-41812462	None:intergenic	40.0%
	CAAACTTAGCCTAACTGTGA+TGG	+	Chr6:41813753-41813772	MsG0680032459.01.T01:intron	40.0%
	CATCACAGTTAGGCTAAGTT+TGG	-	Chr6:41813755-41813774	None:intergenic	40.0%
	CATGAAGTTGAGGGATGATT+TGG	+	Chr6:41814055-41814074	MsG0680032459.01.T01:intron	40.0%
	CCAACAAAACTTACTCCACA+GGG	-	Chr6:41814908-41814927	None:intergenic	40.0%
	CTGATGTTGACATGAACAAG+AGG	+	Chr6:41813043-41813062	MsG0680032459.01.T01:CDS	40.0%
	GATGCTTATATCCACCAGTT+AGG	-	Chr6:41814563-41814582	None:intergenic	40.0%
	GCTTATTTGAGCTTGTCTAC+TGG	+	Chr6:41813433-41813452	MsG0680032459.01.T01:intron	40.0%
	GGATATGTACCATGGTATGT+TGG	-	Chr6:41812796-41812815	None:intergenic	40.0%
	GTGATGAATTGTGCAGTCTT+TGG	+	Chr6:41812888-41812907	MsG0680032459.01.T01:intron	40.0%
	GTGTTGAATACCAACGTTGA+TGG	+	Chr6:41812943-41812962	MsG0680032459.01.T01:CDS	40.0%
	GTTGGAGAACATTATGACTG+TGG	+	Chr6:41813934-41813953	MsG0680032459.01.T01:CDS	40.0%
	TAACCTCCACGTAACAATTC+AGG	+	Chr6:41812628-41812647	MsG0680032459.01.T01:intron	40.0%
	TAAGGAAAGAAAGTTGAGGG+AGG	-	Chr6:41814703-41814722	None:intergenic	40.0%
	TCAACTGGACATGAAGTTGA+GGG	+	Chr6:41814046-41814065	MsG0680032459.01.T01:intron	40.0%
	TGAATTGTTTGCCTAACTGG+TGG	+	Chr6:41814549-41814568	MsG0680032459.01.T01:intron	40.0%
!	AGCTGTTTCAATAGCCATCT+TGG	-	Chr6:41813492-41813511	None:intergenic	40.0%
!!	TACCATGGTATGTTGGTTTG+CGG	-	Chr6:41812789-41812808	None:intergenic	40.0%
!!	TCGTTTGTTCGGTAGTTTTG+TGG	+	Chr6:41814263-41814282	MsG0680032459.01.T01:intron	40.0%
	AATATCGGGTTCGATTCCCA+AGG	-	Chr6:41812225-41812244	None:intergenic	45.0%
	ACAGGGTAGAATTCACAGCA+TGG	-	Chr6:41814891-41814910	None:intergenic	45.0%
	ATATCGGGTTCGATTCCCAA+GGG	-	Chr6:41812224-41812243	None:intergenic	45.0%
	ATCCCTGAATTGTTACGTGG+AGG	-	Chr6:41812634-41812653	None:intergenic	45.0%
	ATGCTGTGAATTCTACCCTG+TGG	+	Chr6:41814890-41814909	MsG0680032459.01.T01:intron	45.0%
	CAATTATGCAGGAATCACCG+AGG	+	Chr6:41815133-41815152	MsG0680032459.01.T01:CDS	45.0%
	CAGGGTAGAATTCACAGCAT+GGG	-	Chr6:41814890-41814909	None:intergenic	45.0%
	CCCAGTAATGTCTCAAACCT+CGG	-	Chr6:41815153-41815172	None:intergenic	45.0%
	CTTCTGCTTTCCATCAACGT+TGG	-	Chr6:41812956-41812975	None:intergenic	45.0%
	TAAACGTGTCTGGTCGACAA+AGG	+	Chr6:41814618-41814637	MsG0680032459.01.T01:intron	45.0%
	TAGGGTGGGATTCACAACAT+TGG	-	Chr6:41814942-41814961	None:intergenic	45.0%
	TGCATCCCTGAATTGTTACG+TGG	-	Chr6:41812637-41812656	None:intergenic	45.0%
!	ACCGAGGTTTGAGACATTAC+TGG	+	Chr6:41815149-41815168	MsG0680032459.01.T01:CDS	45.0%
!	CCGAGGTTTGAGACATTACT+GGG	+	Chr6:41815150-41815169	MsG0680032459.01.T01:CDS	45.0%
!	CGAGGTTTGAGACATTACTG+GGG	+	Chr6:41815151-41815170	MsG0680032459.01.T01:CDS	45.0%
!!	ATGGTATGTTGGTTTGCGGT+GGG	-	Chr6:41812785-41812804	None:intergenic	45.0%
!!	CCCTGTGGAGTAAGTTTTGT+TGG	+	Chr6:41814905-41814924	MsG0680032459.01.T01:intron	45.0%
	ACCAAGACTACTGGTCGTAG+AGG	+	Chr6:41815196-41815215	MsG0680032459.01.T01:CDS	50.0%
	AGGACGTATCCGGGGAATAT+CGG	-	Chr6:41812240-41812259	None:intergenic	50.0%
	ATATTCCCCGGATACGTCCT+TGG	+	Chr6:41812240-41812259	MsG0680032459.01.T01:CDS	50.0%
	CACCGCAAACCAACATACCA+TGG	+	Chr6:41812784-41812803	MsG0680032459.01.T01:intron	50.0%
	CAGGGACCTTGAATTGCCTA+GGG	-	Chr6:41813967-41813986	None:intergenic	50.0%
	GAATCGAACCCGATATTCCC+CGG	+	Chr6:41812228-41812247	MsG0680032459.01.T01:CDS	50.0%
	GGCAATTCAAGGTCCCTGAT+TGG	+	Chr6:41813969-41813988	MsG0680032459.01.T01:CDS	50.0%
	GGCTTAGGGACTGTTTGGAT+TGG	+	Chr6:41813411-41813430	MsG0680032459.01.T01:intron	50.0%
	GGTCGTAGAGGAAAGACTGT+CGG	+	Chr6:41815208-41815227	MsG0680032459.01.T01:CDS	50.0%
	TATCGGGTTCGATTCCCAAG+GGG	-	Chr6:41812223-41812242	None:intergenic	50.0%
	TCAGGGACCTTGAATTGCCT+AGG	-	Chr6:41813968-41813987	None:intergenic	50.0%
	TCCTCTACGACCAGTAGTCT+TGG	-	Chr6:41815200-41815219	None:intergenic	50.0%
	TGAATTGACTGCTGCCGAGT+TGG	+	Chr6:41813916-41813935	MsG0680032459.01.T01:CDS	50.0%
	TGCGAACCCTAGGCAATTCA+AGG	+	Chr6:41813958-41813977	MsG0680032459.01.T01:CDS	50.0%
!	AACCAAGCGTTGTTCCCCTT+GGG	+	Chr6:41812206-41812225	MsG0680032459.01.T01:CDS	50.0%
!	TAACCAAGCGTTGTTCCCCT+TGG	+	Chr6:41812205-41812224	MsG0680032459.01.T01:CDS	50.0%
!	TGGAGCGCTTGAAGAAGATC+AGG	+	Chr6:41814075-41814094	MsG0680032459.01.T01:intron	50.0%
!!	ATGTTGGTTTGCGGTGGGAT+AGG	-	Chr6:41812780-41812799	None:intergenic	50.0%
!!	CATGGTATGTTGGTTTGCGG+TGG	-	Chr6:41812786-41812805	None:intergenic	50.0%
!!	TGTTGGTTTGCGGTGGGATA+GGG	-	Chr6:41812779-41812798	None:intergenic	50.0%
	AACCAAGTTGCTTGGGCCAG+TGG	-	Chr6:41812279-41812298	None:intergenic	55.0%
	CTCCTTCCAAGGACGTATCC+GGG	-	Chr6:41812249-41812268	None:intergenic	55.0%
	GCTCCTTCCAAGGACGTATC+CGG	-	Chr6:41812250-41812269	None:intergenic	55.0%
	GGACAGCACACCAAGACTAC+TGG	+	Chr6:41815187-41815206	MsG0680032459.01.T01:CDS	55.0%
	GGACGTATCCGGGGAATATC+GGG	-	Chr6:41812239-41812258	None:intergenic	55.0%
	TCCTTCCAAGGACGTATCCG+GGG	-	Chr6:41812248-41812267	None:intergenic	55.0%
	TGACTGTGGTTGCGAACCCT+AGG	+	Chr6:41813948-41813967	MsG0680032459.01.T01:CDS	55.0%
	TTCCCAAGGGGAACAACGCT+TGG	-	Chr6:41812211-41812230	None:intergenic	55.0%
!!	GTTGGTTTGCGGTGGGATAG+GGG	-	Chr6:41812778-41812797	None:intergenic	55.0%
	AGAGAGAGGAGGGAGGTTGG+CGG	-	Chr6:41812755-41812774	None:intergenic	60.0%
	AGTTGCTTGGGCCAGTGGCA+AGG	-	Chr6:41812274-41812293	None:intergenic	60.0%
	ATAGGGGAGAGAGAGGAGGG+AGG	-	Chr6:41812762-41812781	None:intergenic	60.0%
	GGGATAGGGGAGAGAGAGGA+GGG	-	Chr6:41812765-41812784	None:intergenic	60.0%
	GTGGCAAGGAGCTCCTTCCA+AGG	-	Chr6:41812260-41812279	None:intergenic	60.0%
	TACTGGGGTCTCCGTGTTCG+CGG	+	Chr6:41815166-41815185	MsG0680032459.01.T01:CDS	60.0%
	TCCCCGGATACGTCCTTGGA+AGG	+	Chr6:41812244-41812263	MsG0680032459.01.T01:CDS	60.0%
	TGCCACTGGCCCAAGCAACT+TGG	+	Chr6:41812274-41812293	MsG0680032459.01.T01:CDS	60.0%
	TGGAAGGAGCTCCTTGCCAC+TGG	+	Chr6:41812260-41812279	MsG0680032459.01.T01:CDS	60.0%
	TGGGATAGGGGAGAGAGAGG+AGG	-	Chr6:41812766-41812785	None:intergenic	60.0%
	TGGTGTGCTGTCCGCGAACA+CGG	-	Chr6:41815180-41815199	None:intergenic	60.0%
	CGGTGGGATAGGGGAGAGAG+AGG	-	Chr6:41812769-41812788	None:intergenic	65.0%
	GGGAGAGAGAGGAGGGAGGT+TGG	-	Chr6:41812758-41812777	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	41812197	41815249	41812197	ID=MsG0680032459.01;Name=MsG0680032459.01
Chr6	mRNA	41812197	41815249	41812197	ID=MsG0680032459.01.T01;Parent=MsG0680032459.01;Name=MsG0680032459.01.T01;_AED=0.57;_eAED=0.58;_QI=0\|0.33\|0.25\|0.75\|0.33\|0.5\|4\|0\|181
Chr6	exon	41812197	41812295	41812197	ID=MsG0680032459.01.T01:exon:22544;Parent=MsG0680032459.01.T01
Chr6	exon	41812904	41813064	41812904	ID=MsG0680032459.01.T01:exon:22545;Parent=MsG0680032459.01.T01
Chr6	exon	41813910	41814060	41813910	ID=MsG0680032459.01.T01:exon:22546;Parent=MsG0680032459.01.T01
Chr6	exon	41815115	41815249	41815115	ID=MsG0680032459.01.T01:exon:22547;Parent=MsG0680032459.01.T01
Chr6	CDS	41812197	41812295	41812197	ID=MsG0680032459.01.T01:cds;Parent=MsG0680032459.01.T01
Chr6	CDS	41812904	41813064	41812904	ID=MsG0680032459.01.T01:cds;Parent=MsG0680032459.01.T01
Chr6	CDS	41813910	41814060	41813910	ID=MsG0680032459.01.T01:cds;Parent=MsG0680032459.01.T01
Chr6	CDS	41815115	41815249	41815115	ID=MsG0680032459.01.T01:cds;Parent=MsG0680032459.01.T01

Gene Sequence

>MsG0680032459.01.T01

ATGCACACTAACCAAGCGTTGTTCCCCTTGGGAATCGAACCCGATATTCCCCGGATACGTCCTTGGAAGGAGCTCCTTGCCACTGGCCCAAGCAACTTGTCTTTGGTAGCGAACGAAGAGTTTCAACACATTCTGCGTGTGTTGAATACCAACGTTGATGGAAAGCAGAAGATACAGTTTGCTATGACTTCAATCAAAGGTATTGGAAGAAGATTTGCTAACATTTGTTGCAAGAAAGCTGATGTTGACATGAACAAGAGAGCTGGTGAATTGACTGCTGCCGAGTTGGAGAACATTATGACTGTGGTTGCGAACCCTAGGCAATTCAAGGTCCCTGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAATTTTCTCAAGTTGTTCAAATCAACTGGACATGAAATATTAATACTTCAATTTCAATTATGCAGGAATCACCGAGGTTTGAGACATTACTGGGGTCTCCGTGTTCGCGGACAGCACACCAAGACTACTGGTCGTAGAGGAAAGACTGTCGGTGTCTCTAAGAAGCGTTGA

Protein sequence

>MsG0680032459.01.T01

MHTNQALFPLGIEPDIPRIRPWKELLATGPSNLSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELTAAELENIMTVVANPRQFKVPDWFLNRKKDYKDGNFLKLFKSTGHEILILQFQLCRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*