AlfalfaGEDB | MsG0480018525.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018525.01

KEGG: K20359
GO: -
PFAM: PF03208

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018525.01.T01	XP_003604521.1	96.861	223	7	0	1	223	4	226	3.11E-150	427

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018525.01.T01	O80915	62.136	206	74	2	2	207	3	204	3.11E-88	262

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018525.01.T01	G7JKL2	96.861	223	7	0	1	223	4	226	1.48e-150	427

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048507.01	MsG0480018525.01	0.838718	2.435106e-57	3.289705e-54
MsG0080048727.01	MsG0480018525.01	-0.815413	9.363901e-52	6.451429e-49
MsG0080049069.01	MsG0480018525.01	-0.814752	1.313104e-51	8.885419e-49
MsG0180000129.01	MsG0480018525.01	-0.805296	1.429692e-49	7.536230e-47
MsG0180001610.01	MsG0480018525.01	-0.806369	8.507812e-50	4.609556e-47
MsG0180001704.01	MsG0480018525.01	-0.816046	6.765697e-52	4.743173e-49
MsG0180002700.01	MsG0480018525.01	-0.820871	5.454605e-53	4.368431e-50
MsG0180004518.01	MsG0480018525.01	-0.817109	3.909706e-52	2.821685e-49
MsG0180005248.01	MsG0480018525.01	0.824978	6.020347e-54	5.416369e-51
MsG0280006318.01	MsG0480018525.01	0.819632	1.048915e-52	8.115178e-50
MsG0280006418.01	MsG0480018525.01	0.803934	2.750291e-49	1.399914e-46
MsG0280010604.01	MsG0480018525.01	0.820583	6.353691e-53	5.047200e-50
MsG0280011110.01	MsG0480018525.01	0.825189	5.369508e-54	4.859901e-51
MsG0380012868.01	MsG0480018525.01	-0.802966	4.365273e-49	2.167232e-46
MsG0380013295.01	MsG0480018525.01	0.803332	3.666753e-49	1.837572e-46
MsG0380014386.01	MsG0480018525.01	-0.804752	1.857285e-49	9.654842e-47
MsG0380014909.01	MsG0480018525.01	-0.803318	3.691315e-49	1.849199e-46
MsG0480018525.01	MsG0480018673.01	-0.801607	8.314099e-49	3.987337e-46
MsG0480018525.01	MsG0480020502.01	-0.812768	3.591056e-51	2.303073e-48
MsG0480018525.01	MsG0480021248.01	-0.833190	6.148713e-56	7.028933e-53
MsG0480018525.01	MsG0480022491.01	0.836549	8.768482e-57	1.108660e-53
MsG0480018525.01	MsG0480022994.01	-0.800659	1.298929e-48	6.082341e-46
MsG0480018525.01	MsG0480023190.01	-0.820244	7.598772e-53	5.980126e-50
MsG0480018525.01	MsG0480023348.01	0.804617	1.982559e-49	1.026910e-46
MsG0480018525.01	MsG0480023723.01	-0.831769	1.383506e-55	1.516394e-52
MsG0480018525.01	MsG0580024285.01	-0.817357	3.438423e-52	2.498490e-49
MsG0480018525.01	MsG0580024790.01	0.809163	2.167043e-50	1.263060e-47
MsG0480018525.01	MsG0580025407.01	0.801303	9.595635e-49	4.566985e-46
MsG0480018525.01	MsG0580025561.01	0.807141	5.844005e-50	3.229826e-47
MsG0480018525.01	MsG0580025827.01	-0.837963	3.811446e-57	5.031869e-54
MsG0480018525.01	MsG0580026159.01	0.822797	1.954565e-53	1.652735e-50
MsG0480018525.01	MsG0580028065.01	0.801784	7.646200e-49	3.683592e-46
MsG0480018525.01	MsG0580028419.01	-0.815442	9.224840e-52	6.360996e-49
MsG0480018525.01	MsG0580028428.01	-0.806185	9.301895e-50	5.016464e-47
MsG0480018525.01	MsG0580029262.01	0.876402	1.436933e-68	6.957144e-65
MsG0480018525.01	MsG0680030599.01	-0.800146	1.652888e-48	7.639273e-46
MsG0480018525.01	MsG0680031852.01	0.803178	3.945403e-49	1.969488e-46
MsG0480018525.01	MsG0680034759.01	0.801500	8.746394e-49	4.183536e-46
MsG0480018525.01	MsG0780035965.01	-0.819424	1.169890e-52	8.999266e-50
MsG0480018525.01	MsG0780036792.01	-0.839703	1.352415e-57	1.882740e-54
MsG0480018525.01	MsG0780038056.01	-0.822788	1.964048e-53	1.660373e-50
MsG0480018525.01	MsG0780039161.01	-0.803178	3.946320e-49	1.969926e-46
MsG0480018525.01	MsG0780040881.01	0.820364	7.133710e-53	5.632863e-50
MsG0480018525.01	MsG0780041117.01	0.812076	5.084293e-51	3.201222e-48
MsG0480018525.01	MsG0880041864.01	-0.819120	1.372316e-52	1.046753e-49
MsG0480018525.01	MsG0880043298.01	-0.800030	1.744815e-48	8.040563e-46
MsG0480018525.01	MsG0880045722.01	-0.818718	1.693857e-52	1.277725e-49
MsG0480018525.01	MsG0880046334.01	0.828574	8.335039e-55	8.317635e-52
MsG0480018525.01	MsG0880046434.01	0.817903	2.590776e-52	1.910869e-49
MsG0480018525.01	MsG0880046699.01	-0.801297	9.624160e-49	4.579888e-46
MsG0480018525.01	MsG0880047481.01	0.867707	1.122469e-65	3.956148e-62
MsG0380015891.01	MsG0480018525.01	-0.805341	1.398814e-49	7.382017e-47
MsG0380016057.01	MsG0480018525.01	-0.809966	1.456724e-50	8.673197e-48
MsG0380016188.01	MsG0480018525.01	0.800455	1.429478e-48	6.658840e-46
MsG0380017437.01	MsG0480018525.01	0.810578	1.075301e-50	6.505926e-48
MsG0380018037.01	MsG0480018525.01	-0.808527	2.964130e-50	1.698798e-47
MsG0280006711.01	MsG0480018525.01	0.801367	9.309401e-49	4.437979e-46
MsG0280007647.01	MsG0480018525.01	-0.835543	1.578825e-56	1.936602e-53
MsG0280008288.01	MsG0480018525.01	0.819689	1.018123e-52	7.889584e-50
MsG0280008928.01	MsG0480018525.01	-0.804919	1.714356e-49	8.950431e-47
MsG0280010484.01	MsG0480018525.01	0.808882	2.488852e-50	1.439677e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018525.01.T01	MTR_4g014060	96.861	223	7	0	1	223	4	226	3.76e-154	427
MsG0480018525.01.T01	MTR_0562s0010	96.861	223	7	0	1	223	4	226	3.76e-154	427
MsG0480018525.01.T01	MTR_5g083490	59.512	205	78	2	3	207	2	201	2.99e-78	234
MsG0480018525.01.T01	MTR_7g096220	38.037	163	99	1	54	216	36	196	1.55e-32	117
MsG0480018525.01.T01	MTR_3g031070	45.087	173	90	1	24	196	1	168	6.58e-29	107
MsG0480018525.01.T01	MTR_2g100260	37.037	162	92	4	41	196	21	178	1.93e-28	106
MsG0480018525.01.T01	MTR_1g070480	41.135	141	81	1	56	196	31	169	5.07e-27	102
MsG0480018525.01.T01	MTR_6g092690	30.526	190	127	3	23	210	2	188	2.70e-25	98.6
MsG0480018525.01.T01	MTR_2g100270	41.667	156	89	1	41	196	20	173	1.38e-23	93.6
MsG0480018525.01.T01	MTR_8g016150	38.255	149	90	1	42	190	20	166	1.06e-19	83.2
MsG0480018525.01.T01	MTR_1g080760	41.727	139	79	1	57	195	35	171	1.52e-18	80.5
MsG0480018525.01.T01	MTR_1g093090	33.758	157	103	1	42	197	8	164	2.91e-17	76.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018525.01.T01	AT2G38360	62.136	206	74	2	2	207	3	204	3.17e-89	262
MsG0480018525.01.T01	AT5G01640	57.547	212	82	4	1	210	2	207	2.16e-80	240
MsG0480018525.01.T01	AT3G56110	57.143	203	75	2	5	207	4	194	5.93e-72	218
MsG0480018525.01.T01	AT3G56110	57.143	203	75	2	5	207	4	194	5.93e-72	218
MsG0480018525.01.T01	AT3G56110	57.143	203	75	2	5	207	4	194	5.93e-72	218
MsG0480018525.01.T01	AT3G56110	57.143	203	75	2	5	207	4	194	5.93e-72	218
MsG0480018525.01.T01	AT5G05380	56.522	207	80	3	1	207	1	197	3.83e-67	206
MsG0480018525.01.T01	AT5G05380	56.522	207	80	3	1	207	52	248	4.00e-67	207
MsG0480018525.01.T01	AT5G05380	56.522	207	80	3	1	207	44	240	5.10e-67	207
MsG0480018525.01.T01	AT5G05380	56.522	207	80	3	1	207	68	264	1.03e-66	207
MsG0480018525.01.T01	AT2G40380	56.039	207	80	2	1	207	1	196	1.56e-65	202
MsG0480018525.01.T01	AT5G07110	63.758	149	54	0	48	196	36	184	3.47e-56	178
MsG0480018525.01.T01	AT4G00005	60.396	101	36	2	80	178	3	101	2.76e-33	116
MsG0480018525.01.T01	AT1G55190	39.429	175	101	3	35	206	14	186	8.63e-33	117
MsG0480018525.01.T01	AT3G13710	36.628	172	106	2	35	205	14	183	2.47e-28	106
MsG0480018525.01.T01	AT1G04260	33.758	157	102	1	41	197	5	159	9.03e-26	99.4
MsG0480018525.01.T01	AT1G08770	38.129	139	86	0	57	195	48	186	2.16e-24	96.3
MsG0480018525.01.T01	AT5G56230	33.113	151	98	2	47	196	26	174	1.92e-23	93.2
MsG0480018525.01.T01	AT1G17700	35.976	164	103	1	35	198	15	176	3.08e-23	92.4
MsG0480018525.01.T01	AT3G13720	37.654	162	98	2	46	206	26	185	9.54e-23	91.7
MsG0480018525.01.T01	AT4G29658	35.625	160	100	2	41	199	19	176	5.95e-21	87.0
MsG0480018525.01.T01	AT1G55640	31.361	169	97	6	47	206	28	186	8.64e-18	78.6

Find 93 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGGATCCGGCGGTGGTTGA+TGG	0.281626	4:-6145160	None:intergenic
TCATCGGCCTCCTCGCTTCA+TGG	0.287239	4:+6145455	MsG0480018525.01.T01:CDS
GTGGCGTCGGAGAAGGATTC+AGG	0.290221	4:-6145325	None:intergenic
GATCATAAGCGTTTCGAAAT+CGG	0.372244	4:-6145539	None:intergenic
GAGAGAGACAGCGAGAATTC+CGG	0.373601	4:-6145404	None:intergenic
CTTGTTTCCGCTTTGATGCT+CGG	0.381195	4:+6145613	MsG0480018525.01.T01:CDS
GGTGGAGGGACGGCGGTGAC+AGG	0.389191	4:-6145139	None:intergenic
CCGGCGGTGGTTGATGGTGG+AGG	0.395718	4:-6145154	None:intergenic
CGGTAGGACGGAAGAGGTAG+AGG	0.407361	4:-6145483	None:intergenic
GGATCTCTTCCTTGATGAAC+AGG	0.412109	4:+6145678	MsG0480018525.01.T01:CDS
GTTGCTGTTGTTTGTCTCCA+TGG	0.420591	4:+6145637	MsG0480018525.01.T01:CDS
ACGGCGGTGACAGGGAGAAC+GGG	0.436071	4:-6145130	None:intergenic
ACAGCTGCGGCACCGGTAGT+AGG	0.444424	4:-6145742	None:intergenic
GCCGCAGCTGTTCCTTCCTC+CGG	0.465868	4:+6145754	MsG0480018525.01.T01:CDS
CGGTACCGGATCCGACGTTC+CGG	0.469766	4:+6145189	MsG0480018525.01.T01:CDS
TTGATGAGGACACGGACGGC+GGG	0.471976	4:-6145220	None:intergenic
TTCCTCCGTGCTCCTACTAC+CGG	0.480106	4:+6145730	MsG0480018525.01.T01:CDS
GATCGTCCTCTCGTTCTCTT+CGG	0.480472	4:+6145505	MsG0480018525.01.T01:CDS
GGATCCACCGTCTCCGGTAC+CGG	0.485770	4:+6145175	MsG0480018525.01.T01:CDS
ACGGAGGGTGGCGTCGGAGA+AGG	0.486075	4:-6145332	None:intergenic
GACGATCGGTAGGACGGAAG+AGG	0.491385	4:-6145489	None:intergenic
GCCTCGCACAACGCCGTCCA+TGG	0.494685	4:+6145269	MsG0480018525.01.T01:CDS
AACTACTACGCCGTCGTCGC+CGG	0.500902	4:+6145385	MsG0480018525.01.T01:CDS
CAGGACAATTCTCAGGCTAC+TGG	0.502141	4:+6145697	MsG0480018525.01.T01:CDS
GATCCGGCGGTGGTTGATGG+TGG	0.505226	4:-6145157	None:intergenic
GGAAGGAACAGCTGCGGCAC+CGG	0.508345	4:-6145749	None:intergenic
AGGGAGAACGGGTGGTGCGG+TGG	0.512560	4:-6145119	None:intergenic
TGATGAACAGGACAATTCTC+AGG	0.512605	4:+6145690	MsG0480018525.01.T01:CDS
GACGGCGGTGACAGGGAGAA+CGG	0.514222	4:-6145131	None:intergenic
GTTAACCGGAACGTCGGATC+CGG	0.518476	4:-6145194	None:intergenic
GGTACCGGAGACGGTGGATC+CGG	0.519128	4:-6145173	None:intergenic
GAAACGCTTATGATCCTCTC+AGG	0.525471	4:+6145547	MsG0480018525.01.T01:CDS
ACCGCCGGATCCACCGTCTC+CGG	0.529045	4:+6145169	MsG0480018525.01.T01:CDS
TCCATGGACGGCGTTGTGCG+AGG	0.531166	4:-6145270	None:intergenic
CCATGGAGCATTCCGTGCAC+CGG	0.534816	4:+6145654	MsG0480018525.01.T01:CDS
CGAGAGGACGATCGGTAGGA+CGG	0.535810	4:-6145495	None:intergenic
GTGGAGGGACGGCGGTGACA+GGG	0.536939	4:-6145138	None:intergenic
TTCTCTCTCATCCTCCTCAT+CGG	0.539240	4:+6145439	MsG0480018525.01.T01:CDS
GGTGGTTGATGGTGGAGGGA+CGG	0.543139	4:-6145149	None:intergenic
AGCGAGAATTCCGGCGACGA+CGG	0.543379	4:-6145395	None:intergenic
CGGAACGTCGGATCCGGTAC+CGG	0.544018	4:-6145188	None:intergenic
GATGAGGACACGGACGGCGG+GGG	0.545603	4:-6145218	None:intergenic
GACAGGGAGAACGGGTGGTG+CGG	0.550559	4:-6145122	None:intergenic
GGCGTTGTGCGAGGCCGTTG+CGG	0.553514	4:-6145261	None:intergenic
CCGGTGCACGGAATGCTCCA+TGG	0.555859	4:-6145654	None:intergenic
TCATCAAGGAAGAGATCCTC+CGG	0.566507	4:-6145673	None:intergenic
GGTAGTAGGAGCACGGAGGA+AGG	0.568269	4:-6145728	None:intergenic
GTCGGATCCGGTACCGGAGA+CGG	0.568445	4:-6145182	None:intergenic
GGAGACGGTGGATCCGGCGG+TGG	0.569149	4:-6145167	None:intergenic
GCGGACACGGAGGGTGGCGT+CGG	0.570953	4:-6145338	None:intergenic
ATTCAGAGAGGTTGTTGATG+AGG	0.571632	4:-6145234	None:intergenic
TAGGAGCACGGAGGAAGGAG+AGG	0.572418	4:-6145723	None:intergenic
AAGCGAGGAGGCCGATGAGG+AGG	0.572536	4:-6145450	None:intergenic
GGAAGAGATCCTCCGGTGCA+CGG	0.575672	4:-6145666	None:intergenic
AATCAAACGCGTCCGGAGGA+AGG	0.576535	4:-6145766	None:intergenic
TGAGAGAGAACGGATTTGTG+AGG	0.578524	4:-6145426	None:intergenic
ACCAAATCAAACGCGTCCGG+AGG	0.578759	4:-6145770	None:intergenic
GAAGAGAACGAGAGGACGAT+CGG	0.579653	4:-6145503	None:intergenic
CGGCGGTGGTTGATGGTGGA+GGG	0.583397	4:-6145153	None:intergenic
ATTACCAAATCAAACGCGTC+CGG	0.587692	4:-6145773	None:intergenic
GAACAGATCCAACGCTGGTG+AGG	0.590012	4:-6145591	None:intergenic
GGATTCAGGTTTGCTGAAAG+CGG	0.593988	4:-6145311	None:intergenic
GAGAATTGTCCTGTTCATCA+AGG	0.594118	4:-6145687	None:intergenic
TATGATCCTCTCAGGACTCA+CGG	0.596304	4:+6145555	MsG0480018525.01.T01:CDS
TGATGAGGACACGGACGGCG+GGG	0.597031	4:-6145219	None:intergenic
CGACGAGTTCTGTCCATGGA+CGG	0.599248	4:-6145282	None:intergenic
ATGAGGAGGATGAGAGAGAA+CGG	0.602652	4:-6145436	None:intergenic
CGGTCGACGAGTTCTGTCCA+TGG	0.610772	4:-6145286	None:intergenic
AGAACGAGAGGACGATCGGT+AGG	0.613116	4:-6145499	None:intergenic
ACCGGAGACGGTGGATCCGG+CGG	0.615510	4:-6145170	None:intergenic
GTTGATGAGGACACGGACGG+CGG	0.616161	4:-6145221	None:intergenic
ATGAAGCGAGGAGGCCGATG+AGG	0.616773	4:-6145453	None:intergenic
GGTTGATGGTGGAGGGACGG+CGG	0.621261	4:-6145146	None:intergenic
GCGGTGACAGGGAGAACGGG+TGG	0.621529	4:-6145127	None:intergenic
AGGACGGAAGAGGTAGAGGA+AGG	0.623311	4:-6145479	None:intergenic
TGGAGCATTCCGTGCACCGG+AGG	0.631225	4:+6145657	MsG0480018525.01.T01:CDS
CAGGTTTGCTGAAAGCGGAA+CGG	0.637545	4:-6145306	None:intergenic
CCTCCACCATCAACCACCGC+CGG	0.642890	4:+6145154	MsG0480018525.01.T01:CDS
CGAAGACCGTGAGTCCTGAG+AGG	0.643994	4:-6145561	None:intergenic
GTGCGACCGAAGAGAACGAG+AGG	0.646103	4:-6145511	None:intergenic
CGGCACCGGTAGTAGGAGCA+CGG	0.647016	4:-6145735	None:intergenic
CGACGGCGTAGTAGTTGACA+CGG	0.654494	4:-6145378	None:intergenic
AGAGGTTGTTGATGAGGACA+CGG	0.660241	4:-6145228	None:intergenic
AGCAACACCGAGCATCAAAG+CGG	0.662231	4:-6145620	None:intergenic
AGAGGAAGGTCCATGAAGCG+AGG	0.662666	4:-6145465	None:intergenic
GGATCCGGTACCGGAGACGG+TGG	0.665866	4:-6145179	None:intergenic
TCCGGAGGAAGGAACAGCTG+CGG	0.666900	4:-6145755	None:intergenic
GGAAGGTCCATGAAGCGAGG+AGG	0.668403	4:-6145462	None:intergenic
CTCTCTGAATCACTCCGCAA+CGG	0.671492	4:+6145247	MsG0480018525.01.T01:CDS
GTTGTTGATGAGGACACGGA+CGG	0.682626	4:-6145224	None:intergenic
AACAAGAACAGATCCAACGC+TGG	0.684838	4:-6145596	None:intergenic
CGTTGCGGAGTGATTCAGAG+AGG	0.702579	4:-6145246	None:intergenic
CACCGGTAGTAGGAGCACGG+AGG	0.761681	4:-6145732	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	GATCATAAGCGTTTCGAAAT+CGG	-	Chr4:6145542-6145561	None:intergenic	35.0%
!!	GGAAGTATGAGTAGTTTTTG+CGG	-	Chr4:6145360-6145379	None:intergenic	35.0%
	ATTCAGAGAGGTTGTTGATG+AGG	-	Chr4:6145237-6145256	None:intergenic	40.0%
	GAGAATTGTCCTGTTCATCA+AGG	-	Chr4:6145690-6145709	None:intergenic	40.0%
	TGATGAACAGGACAATTCTC+AGG	+	Chr4:6145690-6145709	MsG0480018525.01.T01:CDS	40.0%
!	ATGAGTAGTTTTTGCGGACA+CGG	-	Chr4:6145354-6145373	None:intergenic	40.0%
	AACAAGAACAGATCCAACGC+TGG	-	Chr4:6145599-6145618	None:intergenic	45.0%
	ATGAGGAGGATGAGAGAGAA+CGG	-	Chr4:6145439-6145458	None:intergenic	45.0%
	CTTGTTTCCGCTTTGATGCT+CGG	+	Chr4:6145613-6145632	MsG0480018525.01.T01:CDS	45.0%
	GAAACGCTTATGATCCTCTC+AGG	+	Chr4:6145547-6145566	MsG0480018525.01.T01:CDS	45.0%
	GGATCTCTTCCTTGATGAAC+AGG	+	Chr4:6145678-6145697	MsG0480018525.01.T01:CDS	45.0%
	TATGATCCTCTCAGGACTCA+CGG	+	Chr4:6145555-6145574	MsG0480018525.01.T01:CDS	45.0%
	TCATCAAGGAAGAGATCCTC+CGG	-	Chr4:6145676-6145695	None:intergenic	45.0%
	TTCTCTCTCATCCTCCTCAT+CGG	+	Chr4:6145439-6145458	MsG0480018525.01.T01:CDS	45.0%
!	AGAGGTTGTTGATGAGGACA+CGG	-	Chr4:6145231-6145250	None:intergenic	45.0%
!	GTTGCTGTTGTTTGTCTCCA+TGG	+	Chr4:6145637-6145656	MsG0480018525.01.T01:CDS	45.0%
!	TGAGAGAGAACGGATTTGTG+AGG	-	Chr4:6145429-6145448	None:intergenic	45.0%
!!	GGATTCAGGTTTGCTGAAAG+CGG	-	Chr4:6145314-6145333	None:intergenic	45.0%
	AGCAACACCGAGCATCAAAG+CGG	-	Chr4:6145623-6145642	None:intergenic	50.0%
	CAGGACAATTCTCAGGCTAC+TGG	+	Chr4:6145697-6145716	MsG0480018525.01.T01:CDS	50.0%
	CTCTCTGAATCACTCCGCAA+CGG	+	Chr4:6145247-6145266	MsG0480018525.01.T01:CDS	50.0%
	GAAGAGAACGAGAGGACGAT+CGG	-	Chr4:6145506-6145525	None:intergenic	50.0%
	GAGAGAGACAGCGAGAATTC+CGG	-	Chr4:6145407-6145426	None:intergenic	50.0%
	GATCGTCCTCTCGTTCTCTT+CGG	+	Chr4:6145505-6145524	MsG0480018525.01.T01:CDS	50.0%
!	AGTAGTTTTTGCGGACACGG+AGG	-	Chr4:6145351-6145370	None:intergenic	50.0%
!	GTAGTTTTTGCGGACACGGA+GGG	-	Chr4:6145350-6145369	None:intergenic	50.0%
!	GTTGTTGATGAGGACACGGA+CGG	-	Chr4:6145227-6145246	None:intergenic	50.0%
!!	CAGGTTTGCTGAAAGCGGAA+CGG	-	Chr4:6145309-6145328	None:intergenic	50.0%
	AGAACGAGAGGACGATCGGT+AGG	-	Chr4:6145502-6145521	None:intergenic	55.0%
	AGAGGAAGGTCCATGAAGCG+AGG	-	Chr4:6145468-6145487	None:intergenic	55.0%
	AGGACGGAAGAGGTAGAGGA+AGG	-	Chr4:6145482-6145501	None:intergenic	55.0%
	CGACGAGTTCTGTCCATGGA+CGG	-	Chr4:6145285-6145304	None:intergenic	55.0%
	CGACGGCGTAGTAGTTGACA+CGG	-	Chr4:6145381-6145400	None:intergenic	55.0%
	CGTTGCGGAGTGATTCAGAG+AGG	-	Chr4:6145249-6145268	None:intergenic	55.0%
	GAACAGATCCAACGCTGGTG+AGG	-	Chr4:6145594-6145613	None:intergenic	55.0%
	GTTAACCGGAACGTCGGATC+CGG	-	Chr4:6145197-6145216	None:intergenic	55.0%
	TTCCTCCGTGCTCCTACTAC+CGG	+	Chr4:6145730-6145749	MsG0480018525.01.T01:CDS	55.0%
!!	GTCGTTTTCCTCACCAGCGT+TGG	+	Chr4:6145583-6145602	MsG0480018525.01.T01:CDS	55.0%
	AACTACTACGCCGTCGTCGC+CGG	+	Chr4:6145385-6145404	MsG0480018525.01.T01:CDS	60.0%
	AGCGAGAATTCCGGCGACGA+CGG	-	Chr4:6145398-6145417	None:intergenic	60.0%
	ATGAAGCGAGGAGGCCGATG+AGG	-	Chr4:6145456-6145475	None:intergenic	60.0%
	CGAAGACCGTGAGTCCTGAG+AGG	-	Chr4:6145564-6145583	None:intergenic	60.0%
	CGAGAGGACGATCGGTAGGA+CGG	-	Chr4:6145498-6145517	None:intergenic	60.0%
	CGGTAGGACGGAAGAGGTAG+AGG	-	Chr4:6145486-6145505	None:intergenic	60.0%
	CGGTCGACGAGTTCTGTCCA+TGG	-	Chr4:6145289-6145308	None:intergenic	60.0%
	GACGATCGGTAGGACGGAAG+AGG	-	Chr4:6145492-6145511	None:intergenic	60.0%
	GGAAGAGATCCTCCGGTGCA+CGG	-	Chr4:6145669-6145688	None:intergenic	60.0%
	GGAAGGTCCATGAAGCGAGG+AGG	-	Chr4:6145465-6145484	None:intergenic	60.0%
	GGGGGAGTTAACCGGAACGT+CGG	-	Chr4:6145203-6145222	None:intergenic	60.0%
	GTGCGACCGAAGAGAACGAG+AGG	-	Chr4:6145514-6145533	None:intergenic	60.0%
	TCATCGGCCTCCTCGCTTCA+TGG	+	Chr4:6145455-6145474	MsG0480018525.01.T01:CDS	60.0%
	TCCGGAGGAAGGAACAGCTG+CGG	-	Chr4:6145758-6145777	None:intergenic	60.0%
	TTGATGAGGACACGGACGGC+GGG	-	Chr4:6145223-6145242	None:intergenic	60.0%
!	CCATGGAGCATTCCGTGCAC+CGG	+	Chr4:6145654-6145673	MsG0480018525.01.T01:CDS	60.0%
!	GGTAGTAGGAGCACGGAGGA+AGG	-	Chr4:6145731-6145750	None:intergenic	60.0%
!	GTGGCGTCGGAGAAGGATTC+AGG	-	Chr4:6145328-6145347	None:intergenic	60.0%
!	GTTGATGAGGACACGGACGG+CGG	-	Chr4:6145224-6145243	None:intergenic	60.0%
!	GTTTTTGCGGACACGGAGGG+TGG	-	Chr4:6145347-6145366	None:intergenic	60.0%
!	TAGGAGCACGGAGGAAGGAG+AGG	-	Chr4:6145726-6145745	None:intergenic	60.0%
!!	GGTGGTTGATGGTGGAGGGA+CGG	-	Chr4:6145152-6145171	None:intergenic	60.0%
	AAGCGAGGAGGCCGATGAGG+AGG	-	Chr4:6145453-6145472	None:intergenic	65.0%
	ACGGCGGTGACAGGGAGAAC+GGG	-	Chr4:6145133-6145152	None:intergenic	65.0%
	CCGGTGCACGGAATGCTCCA+TGG	-	Chr4:6145657-6145676	None:intergenic	65.0%
	CCTCCACCATCAACCACCGC+CGG	+	Chr4:6145154-6145173	MsG0480018525.01.T01:CDS	65.0%
	CGGAACGTCGGATCCGGTAC+CGG	-	Chr4:6145191-6145210	None:intergenic	65.0%
	GACAGGGAGAACGGGTGGTG+CGG	-	Chr4:6145125-6145144	None:intergenic	65.0%
	GACGGCGGTGACAGGGAGAA+CGG	-	Chr4:6145134-6145153	None:intergenic	65.0%
	GCCGCAGCTGTTCCTTCCTC+CGG	+	Chr4:6145754-6145773	MsG0480018525.01.T01:CDS	65.0%
	GGAAGGAACAGCTGCGGCAC+CGG	-	Chr4:6145752-6145771	None:intergenic	65.0%
	GGATCCACCGTCTCCGGTAC+CGG	+	Chr4:6145175-6145194	MsG0480018525.01.T01:CDS	65.0%
	GTGGATCCGGCGGTGGTTGA+TGG	-	Chr4:6145163-6145182	None:intergenic	65.0%
	TCCATGGACGGCGTTGTGCG+AGG	-	Chr4:6145273-6145292	None:intergenic	65.0%
	TGATGAGGACACGGACGGCG+GGG	-	Chr4:6145222-6145241	None:intergenic	65.0%
!	CACCGGTAGTAGGAGCACGG+AGG	-	Chr4:6145735-6145754	None:intergenic	65.0%
!	CGGTACCGGATCCGACGTTC+CGG	+	Chr4:6145189-6145208	MsG0480018525.01.T01:CDS	65.0%
!	GGTACCGGAGACGGTGGATC+CGG	-	Chr4:6145176-6145195	None:intergenic	65.0%
!	GTCGGATCCGGTACCGGAGA+CGG	-	Chr4:6145185-6145204	None:intergenic	65.0%
!	TGGAGCATTCCGTGCACCGG+AGG	+	Chr4:6145657-6145676	MsG0480018525.01.T01:CDS	65.0%
!!	ACAGCTGCGGCACCGGTAGT+AGG	-	Chr4:6145745-6145764	None:intergenic	65.0%
!!	CGGCACCGGTAGTAGGAGCA+CGG	-	Chr4:6145738-6145757	None:intergenic	65.0%
!!	CGGCGGTGGTTGATGGTGGA+GGG	-	Chr4:6145156-6145175	None:intergenic	65.0%
!!	GATCCGGCGGTGGTTGATGG+TGG	-	Chr4:6145160-6145179	None:intergenic	65.0%
!!	GGTTGATGGTGGAGGGACGG+CGG	-	Chr4:6145149-6145168	None:intergenic	65.0%
	ACCGCCGGATCCACCGTCTC+CGG	+	Chr4:6145169-6145188	MsG0480018525.01.T01:CDS	70.0%
	ACCGGAGACGGTGGATCCGG+CGG	-	Chr4:6145173-6145192	None:intergenic	70.0%
	AGGGAGAACGGGTGGTGCGG+TGG	-	Chr4:6145122-6145141	None:intergenic	70.0%
	CGGACGGCGGGGGAGTTAAC+CGG	-	Chr4:6145211-6145230	None:intergenic	70.0%
	GATGAGGACACGGACGGCGG+GGG	-	Chr4:6145221-6145240	None:intergenic	70.0%
	GCCTCGCACAACGCCGTCCA+TGG	+	Chr4:6145269-6145288	MsG0480018525.01.T01:CDS	70.0%
	GCGGTGACAGGGAGAACGGG+TGG	-	Chr4:6145130-6145149	None:intergenic	70.0%
	GGCGTTGTGCGAGGCCGTTG+CGG	-	Chr4:6145264-6145283	None:intergenic	70.0%
	GTGGAGGGACGGCGGTGACA+GGG	-	Chr4:6145141-6145160	None:intergenic	70.0%
!	ACGGAGGGTGGCGTCGGAGA+AGG	-	Chr4:6145335-6145354	None:intergenic	70.0%
!	GGATCCGGTACCGGAGACGG+TGG	-	Chr4:6145182-6145201	None:intergenic	70.0%
!!	CCGGCGGTGGTTGATGGTGG+AGG	-	Chr4:6145157-6145176	None:intergenic	70.0%
	GCGGACACGGAGGGTGGCGT+CGG	-	Chr4:6145341-6145360	None:intergenic	75.0%
	GGAGACGGTGGATCCGGCGG+TGG	-	Chr4:6145170-6145189	None:intergenic	75.0%
	GGTGGAGGGACGGCGGTGAC+AGG	-	Chr4:6145142-6145161	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	6145115	6145786	6145115	ID=MsG0480018525.01;Name=MsG0480018525.01
Chr4	mRNA	6145115	6145786	6145115	ID=MsG0480018525.01.T01;Parent=MsG0480018525.01;Name=MsG0480018525.01.T01;_AED=0.27;_eAED=0.27;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|223
Chr4	exon	6145115	6145786	6145115	ID=MsG0480018525.01.T01:exon:1583;Parent=MsG0480018525.01.T01
Chr4	CDS	6145115	6145786	6145115	ID=MsG0480018525.01.T01:cds;Parent=MsG0480018525.01.T01

Gene Sequence

>MsG0480018525.01.T01

ATGTCCACCGCACCACCCGTTCTCCCTGTCACCGCCGTCCCTCCACCATCAACCACCGCCGGATCCACCGTCTCCGGTACCGGATCCGACGTTCCGGTTAACTCCCCCGCCGTCCGTGTCCTCATCAACAACCTCTCTGAATCACTCCGCAACGGCCTCGCACAACGCCGTCCATGGACAGAACTCGTCGACCGTTCCGCTTTCAGCAAACCTGAATCCTTCTCCGACGCCACCCTCCGTGTCCGCAAAAACTACTCATACTTCCGTGTCAACTACTACGCCGTCGTCGCCGGAATTCTCGCTGTCTCTCTCCTCACAAATCCGTTCTCTCTCATCCTCCTCATCGGCCTCCTCGCTTCATGGACCTTCCTCTACCTCTTCCGTCCTACCGATCGTCCTCTCGTTCTCTTCGGTCGCACTTTCACCGATTTCGAAACGCTTATGATCCTCTCAGGACTCACGGTCTTCGTCGTTTTCCTCACCAGCGTTGGATCTGTTCTTGTTTCCGCTTTGATGCTCGGTGTTGCTGTTGTTTGTCTCCATGGAGCATTCCGTGCACCGGAGGATCTCTTCCTTGATGAACAGGACAATTCTCAGGCTACTGGTTTCCTCTCCTTCCTCCGTGCTCCTACTACCGGTGCCGCAGCTGTTCCTTCCTCCGGACGCGTTTGA

Protein sequence

>MsG0480018525.01.T01

MSTAPPVLPVTAVPPPSTTAGSTVSGTGSDVPVNSPAVRVLINNLSESLRNGLAQRRPWTELVDRSAFSKPESFSDATLRVRKNYSYFRVNYYAVVAGILAVSLLTNPFSLILLIGLLASWTFLYLFRPTDRPLVLFGRTFTDFETLMILSGLTVFVVFLTSVGSVLVSALMLGVAVVCLHGAFRAPEDLFLDEQDNSQATGFLSFLRAPTTGAAAVPSSGRV*