AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036792.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036792.01.T01 MTR_7g018880 89.238 223 24 0 1 223 1 223 1.17e-148 412
MsG0780036792.01.T01 MTR_5g010050 32.414 145 98 0 77 221 82 226 4.71e-27 104
MsG0780036792.01.T01 MTR_3g090440 26.364 220 150 4 7 220 15 228 1.84e-25 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036792.01.T01 AT1G71480 56.459 209 76 3 22 223 16 216 3.60e-80 239
MsG0780036792.01.T01 AT1G71480 52.632 171 66 3 22 185 16 178 8.17e-56 176
MsG0780036792.01.T01 AT1G71480 45.833 144 63 3 22 158 16 151 3.37e-35 122
MsG0780036792.01.T01 AT5G41470 36.552 145 92 0 77 221 74 218 6.92e-33 120

Find 56 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACCTTTGTAACTGAATT+TGG 0.083389 7:-13921367 None:intergenic
ACTAGTGTAAAGGAGAAATA+TGG 0.261546 7:-13924562 None:intergenic
GTTGGAGTGATCTGGCATTT+AGG 0.265081 7:+13921811 MsG0780036792.01.T01:CDS
GCATCCCCTGGCTTGATTGC+AGG 0.284009 7:-13924244 None:intergenic
TTAGAAGAAGAGGTAGAAAA+TGG 0.284315 7:+13921395 MsG0780036792.01.T01:CDS
GCAAAAGCTCTACATTATTC+TGG 0.285080 7:+13924527 MsG0780036792.01.T01:exon
AAGTTATATGATTAAGTTAT+GGG 0.335937 7:+13924727 MsG0780036792.01.T01:three_prime_UTR
GTCTTTCCACGTCCATTTGT+GGG 0.340761 7:+13921601 MsG0780036792.01.T01:CDS
AAGAGGTAGAAAATGGAATA+TGG 0.343407 7:+13921402 MsG0780036792.01.T01:CDS
AGTGGAGCATAAAATGTTAA+TGG 0.360013 7:+13921258 MsG0780036792.01.T01:exon
GTTTGAAGAGTCTGTGGTGC+TGG 0.360824 7:+13921231 MsG0780036792.01.T01:five_prime_UTR
ATGTTGATTTGATTCTAGTT+TGG 0.373655 7:+13924588 MsG0780036792.01.T01:three_prime_UTR
AATAAACTGCAGATCCTTGC+TGG 0.394776 7:-13921755 None:intergenic
TTGTGATTGTGTGCTGCTAA+TGG 0.396769 7:-13921290 None:intergenic
GAAGTTATATGATTAAGTTA+TGG 0.397580 7:+13924726 MsG0780036792.01.T01:three_prime_UTR
TGTCTTTCCACGTCCATTTG+TGG 0.401046 7:+13921600 MsG0780036792.01.T01:CDS
CATCATTAGTTGGAGTGATC+TGG 0.412383 7:+13921803 MsG0780036792.01.T01:CDS
TATATATTTATATTCAGAAA+AGG 0.434945 7:+13924659 MsG0780036792.01.T01:three_prime_UTR
AATTCAGTTACAAAGGTTGT+TGG 0.436667 7:+13921370 MsG0780036792.01.T01:CDS
AAACTGCATCCTTTGCTAAA+GGG 0.439731 7:-13922647 None:intergenic
TATCATTTGGAAGTGATCAA+TGG 0.444387 7:+13922671 MsG0780036792.01.T01:CDS
CAAGCCAGGGGATGCAACTT+TGG 0.445702 7:+13924252 MsG0780036792.01.T01:CDS
AAAACTGCATCCTTTGCTAA+AGG 0.460379 7:-13922648 None:intergenic
ACGGAGGATTCATCATTAGT+TGG 0.464164 7:+13921793 MsG0780036792.01.T01:CDS
ATTACCTTACGACCCACAAA+TGG 0.468812 7:-13921613 None:intergenic
CTCTGAAAATTGTGTGTATG+AGG 0.478927 7:+13921573 MsG0780036792.01.T01:CDS
GTTGTTGGAGTTAGAAGAAG+AGG 0.481520 7:+13921385 MsG0780036792.01.T01:CDS
GTCTGTGGTGCTGGGTTAAG+TGG 0.481632 7:+13921240 MsG0780036792.01.T01:five_prime_UTR
GCTCTACATTATTCTGGAAA+GGG 0.491424 7:+13924533 MsG0780036792.01.T01:three_prime_UTR
CTAGTGTAAAGGAGAAATAT+GGG 0.494177 7:-13924561 None:intergenic
AGCTCTACATTATTCTGGAA+AGG 0.506443 7:+13924532 MsG0780036792.01.T01:three_prime_UTR
GTTGAACCTGCAATCAAGCC+AGG 0.510194 7:+13924238 MsG0780036792.01.T01:CDS
GTGGTGAGAAATTTCTATGA+AGG 0.510587 7:+13921511 MsG0780036792.01.T01:CDS
ACGTCCATTTGTGGGTCGTA+AGG 0.526163 7:+13921609 MsG0780036792.01.T01:CDS
TATTATTGATGATTTGTCTA+CGG 0.526853 7:+13921774 MsG0780036792.01.T01:CDS
TCAACATACTACTAGTGTAA+AGG 0.527209 7:-13924572 None:intergenic
TCTTCAACGATTTCCTCAGT+TGG 0.530591 7:+13924491 MsG0780036792.01.T01:CDS
CATACCAAAGTTGCATCCCC+TGG 0.535620 7:-13924256 None:intergenic
TGTTCCAAATTCAGTTACAA+AGG 0.565095 7:+13921363 MsG0780036792.01.T01:CDS
TCTGATAAACAGATATGGAC+GGG 0.577054 7:+13924210 MsG0780036792.01.T01:intron
TTTGAAGAGTCTGTGGTGCT+GGG 0.577457 7:+13921232 MsG0780036792.01.T01:five_prime_UTR
CATTAAGTTTGAAGAGTCTG+TGG 0.584186 7:+13921225 MsG0780036792.01.T01:five_prime_UTR
AATATGGCAGTTAATAAGAG+TGG 0.597582 7:+13921418 MsG0780036792.01.T01:CDS
CTATGTGACAAAGAAGTCAA+AGG 0.599318 7:-13921331 None:intergenic
TTGAACCTGCAATCAAGCCA+GGG 0.605419 7:+13924239 MsG0780036792.01.T01:CDS
TTCTGATAAACAGATATGGA+CGG 0.605638 7:+13924209 MsG0780036792.01.T01:intron
TATTGATGATTTGTCTACGG+AGG 0.608974 7:+13921777 MsG0780036792.01.T01:CDS
TGTAGATTCAGCTTCAACAG+TGG 0.614055 7:+13921492 MsG0780036792.01.T01:CDS
GTTCACTGATTCTACCAGCA+AGG 0.619438 7:+13921741 MsG0780036792.01.T01:CDS
TTACGACCCACAAATGGACG+TGG 0.627873 7:-13921607 None:intergenic
GTTGTTATCATCAAAGCTAG+TGG 0.630648 7:-13921467 None:intergenic
TTAATGAACACAGAATGGAA+AGG 0.648838 7:+13922614 MsG0780036792.01.T01:intron
CAGTGATAATGAGTGTGACA+TGG 0.665592 7:+13924466 MsG0780036792.01.T01:CDS
TATAATCGGTCTGCCAACTG+AGG 0.665914 7:-13924504 None:intergenic
CAAATGGACGTGGAAAGACA+AGG 0.682609 7:-13921597 None:intergenic
TGAACCTGCAATCAAGCCAG+GGG 0.698730 7:+13924240 MsG0780036792.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTTATATTCAGAAA+AGG + Chr7:13924659-13924678 MsG0780036792.01.T01:three_prime_UTR 10.0%
!! AAAAACTTACTACTAAATAA+GGG - Chr7:13922118-13922137 None:intergenic 15.0%
!! AACTATTTAAATCTAAGTAT+GGG + Chr7:13922903-13922922 MsG0780036792.01.T01:intron 15.0%
!! AAAACTTACTACTAAATAAG+GGG - Chr7:13922117-13922136 None:intergenic 20.0%
!! ATTTATTAGTAACTTCCAAA+AGG + Chr7:13922565-13922584 MsG0780036792.01.T01:intron 20.0%
!! CAAAAACTTACTACTAAATA+AGG - Chr7:13922119-13922138 None:intergenic 20.0%
!! CAAATGTATAGATATAAAGA+AGG - Chr7:13921854-13921873 None:intergenic 20.0%
!! GAACTATTTAAATCTAAGTA+TGG + Chr7:13922902-13922921 MsG0780036792.01.T01:intron 20.0%
!! TAGAAGAAGTTTATAAAAAG+TGG + Chr7:13921667-13921686 MsG0780036792.01.T01:intron 20.0%
!! TGAAAATGATTGCAAAATAT+TGG + Chr7:13922483-13922502 MsG0780036792.01.T01:intron 20.0%
!! TTTGGAAGTTACTAATAAAT+AGG - Chr7:13922565-13922584 None:intergenic 20.0%
!!! AAGTGTAAATTAGTTTTACA+CGG - Chr7:13922524-13922543 None:intergenic 20.0%
!!! AATTACTAGTACTATTTTAC+AGG + Chr7:13921696-13921715 MsG0780036792.01.T01:intron 20.0%
!!! ATATTTCTGATAAACAGATA+TGG + Chr7:13924205-13924224 MsG0780036792.01.T01:intron 20.0%
!!! CTTATTTAGTAGTAAGTTTT+TGG + Chr7:13922117-13922136 MsG0780036792.01.T01:intron 20.0%
!!! TATTATTGATGATTTGTCTA+CGG + Chr7:13921774-13921793 MsG0780036792.01.T01:CDS 20.0%
! CTTGGAAAACTATACAAAAT+CGG + Chr7:13923215-13923234 MsG0780036792.01.T01:intron 25.0%
! TGATGATTATATTCTTGTAG+AGG + Chr7:13922849-13922868 MsG0780036792.01.T01:intron 25.0%
!! AAAGAAACTTCAAGTTAAAC+TGG - Chr7:13924035-13924054 None:intergenic 25.0%
!! AAGAAACTTCAAGTTAAACT+GGG - Chr7:13924034-13924053 None:intergenic 25.0%
!! AATACATTACATACACCTTT+TGG - Chr7:13922583-13922602 None:intergenic 25.0%
!! AATTTCTAAGCATTTGAGTT+GGG + Chr7:13923990-13924009 MsG0780036792.01.T01:intron 25.0%
!! ATTTGTTAATGAACACAGAA+TGG + Chr7:13922609-13922628 MsG0780036792.01.T01:intron 25.0%
!! GCATTTATTCTATTTCTCAA+TGG + Chr7:13923612-13923631 MsG0780036792.01.T01:intron 25.0%
!! TTGCAATCATTTTCAAAATG+TGG - Chr7:13922478-13922497 None:intergenic 25.0%
!!! ATGTTGATTTGATTCTAGTT+TGG + Chr7:13924588-13924607 MsG0780036792.01.T01:three_prime_UTR 25.0%
AACTGTTATTGAGATACTAG+TGG - Chr7:13922313-13922332 None:intergenic 30.0%
AAGAGGTAGAAAATGGAATA+TGG + Chr7:13921402-13921421 MsG0780036792.01.T01:CDS 30.0%
AATATGAATTGAGTGGTACT+CGG + Chr7:13922085-13922104 MsG0780036792.01.T01:intron 30.0%
AATATGGCAGTTAATAAGAG+TGG + Chr7:13921418-13921437 MsG0780036792.01.T01:CDS 30.0%
AATTCAGTTACAAAGGTTGT+TGG + Chr7:13921370-13921389 MsG0780036792.01.T01:CDS 30.0%
ACAACCTTTGTAACTGAATT+TGG - Chr7:13921370-13921389 None:intergenic 30.0%
ACTAGTGTAAAGGAGAAATA+TGG - Chr7:13924565-13924584 None:intergenic 30.0%
AGCTAAAATTTGTAACAGTG+TGG + Chr7:13923457-13923476 MsG0780036792.01.T01:intron 30.0%
AGTGGAGCATAAAATGTTAA+TGG + Chr7:13921258-13921277 MsG0780036792.01.T01:exon 30.0%
AGTTTCTTTACTCAGTTTAG+TGG + Chr7:13924046-13924065 MsG0780036792.01.T01:intron 30.0%
ATCAAACCTTCAATAACAAG+TGG - Chr7:13923318-13923337 None:intergenic 30.0%
CAATTTCTAAGCATTTGAGT+TGG + Chr7:13923989-13924008 MsG0780036792.01.T01:intron 30.0%
CTAGTGTAAAGGAGAAATAT+GGG - Chr7:13924564-13924583 None:intergenic 30.0%
GGAAGACTATACAAATTATG+CGG + Chr7:13923158-13923177 MsG0780036792.01.T01:intron 30.0%
TAATGTTCTTGTTCACATTC+AGG + Chr7:13924084-13924103 MsG0780036792.01.T01:intron 30.0%
TACTATCGATATTTCTTCCT+CGG + Chr7:13924371-13924390 MsG0780036792.01.T01:intron 30.0%
TATCATTTGGAAGTGATCAA+TGG + Chr7:13922671-13922690 MsG0780036792.01.T01:CDS 30.0%
TCAACATACTACTAGTGTAA+AGG - Chr7:13924575-13924594 None:intergenic 30.0%
TGTTCCAAATTCAGTTACAA+AGG + Chr7:13921363-13921382 MsG0780036792.01.T01:CDS 30.0%
TTAATGAACACAGAATGGAA+AGG + Chr7:13922614-13922633 MsG0780036792.01.T01:intron 30.0%
TTAGAAGAAGAGGTAGAAAA+TGG + Chr7:13921395-13921414 MsG0780036792.01.T01:CDS 30.0%
TTCTGATAAACAGATATGGA+CGG + Chr7:13924209-13924228 MsG0780036792.01.T01:intron 30.0%
TTCTGTATGCGTTAATTCAA+TGG + Chr7:13923801-13923820 MsG0780036792.01.T01:intron 30.0%
TTTGATCCGAAATAGCAAAA+TGG + Chr7:13923349-13923368 MsG0780036792.01.T01:intron 30.0%
TTTGGAAACAATTAACATGC+AGG + Chr7:13924443-13924462 MsG0780036792.01.T01:intron 30.0%
! ACTTGTTTAAATTTTCCAGG+TGG + Chr7:13923412-13923431 MsG0780036792.01.T01:intron 30.0%
! AGGATGCAGTTTTTATCATT+TGG + Chr7:13922658-13922677 MsG0780036792.01.T01:CDS 30.0%
! ATTGGAGATATACGCTATTT+TGG + Chr7:13923058-13923077 MsG0780036792.01.T01:intron 30.0%
! CAAGTGATTTTTCATGACAA+AGG + Chr7:13923516-13923535 MsG0780036792.01.T01:intron 30.0%
! CTGTACTGTTTTATCAGTTA+AGG + Chr7:13923827-13923846 MsG0780036792.01.T01:intron 30.0%
! GTCACTTGTTTAAATTTTCC+AGG + Chr7:13923409-13923428 MsG0780036792.01.T01:intron 30.0%
!! GATTTTGGCAGAATAGTTTA+TGG + Chr7:13923855-13923874 MsG0780036792.01.T01:intron 30.0%
!! TGTAGAGCTTTTGCTATAAT+CGG - Chr7:13924521-13924540 None:intergenic 30.0%
AAAACTGCATCCTTTGCTAA+AGG - Chr7:13922651-13922670 None:intergenic 35.0%
AAACTGAGAAAAGTAGGTTG+TGG + Chr7:13922876-13922895 MsG0780036792.01.T01:intron 35.0%
AAACTGCATCCTTTGCTAAA+GGG - Chr7:13922650-13922669 None:intergenic 35.0%
AAGAAACACATTCAAGCACA+AGG - Chr7:13924114-13924133 None:intergenic 35.0%
AAGATAGAGAGGTTAGAGAA+GGG + Chr7:13922979-13922998 MsG0780036792.01.T01:intron 35.0%
AAGATCAGTGTGTTTAGTCT+TGG + Chr7:13923032-13923051 MsG0780036792.01.T01:intron 35.0%
AAGTACTTTCTTCACTGCTT+TGG - Chr7:13922001-13922020 None:intergenic 35.0%
AATAGCAAAATGGTTGGGTT+TGG + Chr7:13923359-13923378 MsG0780036792.01.T01:intron 35.0%
AATATAATGGCCCAATCAGA+TGG - Chr7:13922373-13922392 None:intergenic 35.0%
ACAATATGACGAGTTCTCAT+TGG - Chr7:13922436-13922455 None:intergenic 35.0%
ACTCAATAGCATCACTGATA+AGG - Chr7:13924291-13924310 None:intergenic 35.0%
ACTTTGACGTCCATAGATAA+CGG - Chr7:13923138-13923157 None:intergenic 35.0%
AGAACAATCAGTCAGAAGAT+TGG - Chr7:13922163-13922182 None:intergenic 35.0%
AGCCCAATATGTATAGATCA+AGG - Chr7:13922404-13922423 None:intergenic 35.0%
ATATAATGGCCCAATCAGAT+GGG - Chr7:13922372-13922391 None:intergenic 35.0%
ATCCGAAATAGCAAAATGGT+TGG + Chr7:13923353-13923372 MsG0780036792.01.T01:intron 35.0%
ATCTGATTGGGCCATTATAT+TGG + Chr7:13922372-13922391 MsG0780036792.01.T01:intron 35.0%
CATTAAGTTTGAAGAGTCTG+TGG + Chr7:13921225-13921244 MsG0780036792.01.T01:five_prime_UTR 35.0%
CGATACGAATATGAATTGAG+TGG + Chr7:13922078-13922097 MsG0780036792.01.T01:intron 35.0%
CTATGTGACAAAGAAGTCAA+AGG - Chr7:13921334-13921353 None:intergenic 35.0%
GCAAAAGCTCTACATTATTC+TGG + Chr7:13924527-13924546 MsG0780036792.01.T01:exon 35.0%
GGCCTTGATCTATACATATT+GGG + Chr7:13922399-13922418 MsG0780036792.01.T01:intron 35.0%
GGCTAAAAACTGAGAAAAGT+AGG + Chr7:13922870-13922889 MsG0780036792.01.T01:intron 35.0%
GTGGTGAGAAATTTCTATGA+AGG + Chr7:13921511-13921530 MsG0780036792.01.T01:CDS 35.0%
GTTGTTATCATCAAAGCTAG+TGG - Chr7:13921470-13921489 None:intergenic 35.0%
TAGACTGTTTCCGTTATCTA+TGG + Chr7:13923125-13923144 MsG0780036792.01.T01:intron 35.0%
TCAACTTTGTGTTTCAATGC+AGG - Chr7:13921944-13921963 None:intergenic 35.0%
TCCGAAATAGCAAAATGGTT+GGG + Chr7:13923354-13923373 MsG0780036792.01.T01:intron 35.0%
TCTCAATGGTTCACTTGTTT+AGG + Chr7:13923626-13923645 MsG0780036792.01.T01:intron 35.0%
TCTGATAAACAGATATGGAC+GGG + Chr7:13924210-13924229 MsG0780036792.01.T01:intron 35.0%
TCTGATTGGGCCATTATATT+GGG + Chr7:13922373-13922392 MsG0780036792.01.T01:intron 35.0%
! AAGACTTTTCCCTTTAGCAA+AGG + Chr7:13922638-13922657 MsG0780036792.01.T01:CDS 35.0%
! AGCTATCAGTCTGATCTTTT+TGG + Chr7:13924425-13924444 MsG0780036792.01.T01:intron 35.0%
! AGCTCTACATTATTCTGGAA+AGG + Chr7:13924532-13924551 MsG0780036792.01.T01:three_prime_UTR 35.0%
! ATGGTTCACTTGTTTAGGTT+TGG + Chr7:13923631-13923650 MsG0780036792.01.T01:intron 35.0%
! CTCTGAAAATTGTGTGTATG+AGG + Chr7:13921573-13921592 MsG0780036792.01.T01:CDS 35.0%
! GCTCTACATTATTCTGGAAA+GGG + Chr7:13924533-13924552 MsG0780036792.01.T01:three_prime_UTR 35.0%
! GTGTTTCTTTGCTATATAGC+AGG + Chr7:13923963-13923982 MsG0780036792.01.T01:intron 35.0%
! TATTGATGATTTGTCTACGG+AGG + Chr7:13921777-13921796 MsG0780036792.01.T01:CDS 35.0%
! TCAGTTAAGGTTGCAGATTT+TGG + Chr7:13923840-13923859 MsG0780036792.01.T01:intron 35.0%
! TGGCCTTGATCTATACATAT+TGG + Chr7:13922398-13922417 MsG0780036792.01.T01:intron 35.0%
!! AAATTTTCCAGGTGGATTCA+AGG + Chr7:13923420-13923439 MsG0780036792.01.T01:intron 35.0%
!! TGTGTTTAGTCTTGGATGAT+TGG + Chr7:13923040-13923059 MsG0780036792.01.T01:intron 35.0%
!! TGTTTAGGTTTGGTGTGTAA+TGG + Chr7:13923641-13923660 MsG0780036792.01.T01:intron 35.0%
!!! ACCCAACCATTTTGCTATTT+CGG - Chr7:13923358-13923377 None:intergenic 35.0%
AAAATGGTTGGGTTTGGAAG+GGG + Chr7:13923365-13923384 MsG0780036792.01.T01:intron 40.0%
AAAGCGTGGAATAATTGGAG+AGG + Chr7:13923246-13923265 MsG0780036792.01.T01:intron 40.0%
AATAAACTGCAGATCCTTGC+TGG - Chr7:13921758-13921777 None:intergenic 40.0%
ACACTCATTTGTGTAGTGCA+GGG + Chr7:13923269-13923288 MsG0780036792.01.T01:intron 40.0%
ACAGAGGGAAAATTGCTTGA+AGG - Chr7:13923898-13923917 None:intergenic 40.0%
ACGGAGGATTCATCATTAGT+TGG + Chr7:13921793-13921812 MsG0780036792.01.T01:CDS 40.0%
AGCTGTTGAGGTTGTAATCA+GGG + Chr7:13922206-13922225 MsG0780036792.01.T01:intron 40.0%
AGGACACTCAAAACAACAGA+GGG - Chr7:13923913-13923932 None:intergenic 40.0%
ATTACCTTACGACCCACAAA+TGG - Chr7:13921616-13921635 None:intergenic 40.0%
CAAAATGGTTGGGTTTGGAA+GGG + Chr7:13923364-13923383 MsG0780036792.01.T01:intron 40.0%
CATATATACCTAGAGACGCA+GGG - Chr7:13923697-13923716 None:intergenic 40.0%
CATCATTAGTTGGAGTGATC+TGG + Chr7:13921803-13921822 MsG0780036792.01.T01:CDS 40.0%
CTAAAATGCTGCCATGGAAT+TGG + Chr7:13923568-13923587 MsG0780036792.01.T01:intron 40.0%
GAAGATAGAGAGGTTAGAGA+AGG + Chr7:13922978-13922997 MsG0780036792.01.T01:intron 40.0%
GCATGTGATCAGTCATTTGA+AGG + Chr7:13923180-13923199 MsG0780036792.01.T01:intron 40.0%
GTTATCTATGGACGTCAAAG+TGG + Chr7:13923137-13923156 MsG0780036792.01.T01:intron 40.0%
GTTGTTGGAGTTAGAAGAAG+AGG + Chr7:13921385-13921404 MsG0780036792.01.T01:CDS 40.0%
TACTTTCTTCACTGCTTTGG+AGG - Chr7:13921998-13922017 None:intergenic 40.0%
TATAATGGCCCAATCAGATG+GGG - Chr7:13922371-13922390 None:intergenic 40.0%
TCAGAAGACACTAATATCCG+AGG - Chr7:13924391-13924410 None:intergenic 40.0%
TCAGTGATGCTATTGAGTAC+TGG + Chr7:13924293-13924312 MsG0780036792.01.T01:intron 40.0%
TCTTCAACGATTTCCTCAGT+TGG + Chr7:13924491-13924510 MsG0780036792.01.T01:CDS 40.0%
TGTAGATTCAGCTTCAACAG+TGG + Chr7:13921492-13921511 MsG0780036792.01.T01:CDS 40.0%
TGTGATCAGTCATTTGAAGG+TGG + Chr7:13923183-13923202 MsG0780036792.01.T01:intron 40.0%
TGTTGAGGGTTAAATCGGAA+GGG + Chr7:13922928-13922947 MsG0780036792.01.T01:intron 40.0%
TTAACATGACGAGAGTAGCA+TGG + Chr7:13922741-13922760 MsG0780036792.01.T01:intron 40.0%
TTGTTGAGGGTTAAATCGGA+AGG + Chr7:13922927-13922946 MsG0780036792.01.T01:intron 40.0%
! AACAGTCTAAAATGCTGCCA+TGG + Chr7:13923562-13923581 MsG0780036792.01.T01:intron 40.0%
! ACTTAGAAAGTGTGAAGAGC+AGG + Chr7:13922046-13922065 MsG0780036792.01.T01:intron 40.0%
! CACTTTCACATTTTCTGCGT+TGG - Chr7:13924636-13924655 None:intergenic 40.0%
! CAGTGATAATGAGTGTGACA+TGG + Chr7:13924466-13924485 MsG0780036792.01.T01:CDS 40.0%
! CTTAGAAAGTGTGAAGAGCA+GGG + Chr7:13922047-13922066 MsG0780036792.01.T01:intron 40.0%
! TTGATTCCTAGCTCTCCAAA+CGG - Chr7:13923499-13923518 None:intergenic 40.0%
! TTGTGATTGTGTGCTGCTAA+TGG - Chr7:13921293-13921312 None:intergenic 40.0%
!! AAGCATTTGAGTTGGGTGTA+GGG + Chr7:13923997-13924016 MsG0780036792.01.T01:intron 40.0%
!! ATCTAAGTATGGGCTTGTTG+AGG + Chr7:13922913-13922932 MsG0780036792.01.T01:intron 40.0%
!! TAAGCATTTGAGTTGGGTGT+AGG + Chr7:13923996-13924015 MsG0780036792.01.T01:intron 40.0%
!! TCTAAGTATGGGCTTGTTGA+GGG + Chr7:13922914-13922933 MsG0780036792.01.T01:intron 40.0%
!! TGTGAGCCACTTGTTATTGA+AGG + Chr7:13923309-13923328 MsG0780036792.01.T01:intron 40.0%
!! TGTTTTGAGTGTCCTGGTAT+TGG + Chr7:13923918-13923937 MsG0780036792.01.T01:intron 40.0%
!! TTAGCTTGCAACCAATTCCA+TGG - Chr7:13923582-13923601 None:intergenic 40.0%
AGACGCAGGGAAAAAAACAG+TGG - Chr7:13923684-13923703 None:intergenic 45.0%
AGGGTTAAATCGGAAGGGTT+GGG + Chr7:13922933-13922952 MsG0780036792.01.T01:intron 45.0%
CAAATGGACGTGGAAAGACA+AGG - Chr7:13921600-13921619 None:intergenic 45.0%
CAAGGCCAGACCCAATATAA+TGG - Chr7:13922386-13922405 None:intergenic 45.0%
CAGGACACTCAAAACAACAG+AGG - Chr7:13923914-13923933 None:intergenic 45.0%
CCAATTATTCCACGCTTTGC+TGG - Chr7:13923244-13923263 None:intergenic 45.0%
CCAGCAAAGCGTGGAATAAT+TGG + Chr7:13923241-13923260 MsG0780036792.01.T01:intron 45.0%
CCATATATACCTAGAGACGC+AGG - Chr7:13923698-13923717 None:intergenic 45.0%
CCTGCGTCTCTAGGTATATA+TGG + Chr7:13923695-13923714 MsG0780036792.01.T01:intron 45.0%
CTCTCTATCTTCTTCCACCA+CGG - Chr7:13922970-13922989 None:intergenic 45.0%
GACACTCATTTGTGTAGTGC+AGG + Chr7:13923268-13923287 MsG0780036792.01.T01:intron 45.0%
GAGCTGTTGAGGTTGTAATC+AGG + Chr7:13922205-13922224 MsG0780036792.01.T01:intron 45.0%
GCAAAATGGTTGGGTTTGGA+AGG + Chr7:13923363-13923382 MsG0780036792.01.T01:intron 45.0%
GCGTCTCTAGGTATATATGG+TGG + Chr7:13923698-13923717 MsG0780036792.01.T01:intron 45.0%
GTCTTTCCACGTCCATTTGT+GGG + Chr7:13921601-13921620 MsG0780036792.01.T01:CDS 45.0%
GTTGGAGTGATCTGGCATTT+AGG + Chr7:13921811-13921830 MsG0780036792.01.T01:CDS 45.0%
TAGCGTGTATTCAGTCCGTT+TGG + Chr7:13923481-13923500 MsG0780036792.01.T01:intron 45.0%
TATAATCGGTCTGCCAACTG+AGG - Chr7:13924507-13924526 None:intergenic 45.0%
TGTCTTTCCACGTCCATTTG+TGG + Chr7:13921600-13921619 MsG0780036792.01.T01:CDS 45.0%
TGTTGAGGTTGTAATCAGGG+CGG + Chr7:13922209-13922228 MsG0780036792.01.T01:intron 45.0%
TTGAACCTGCAATCAAGCCA+GGG + Chr7:13924239-13924258 MsG0780036792.01.T01:CDS 45.0%
TTGGGCCATTATATTGGGTC+TGG + Chr7:13922378-13922397 MsG0780036792.01.T01:intron 45.0%
TTTGAAGAGTCTGTGGTGCT+GGG + Chr7:13921232-13921251 MsG0780036792.01.T01:five_prime_UTR 45.0%
! ACAAAGTTGATCTCCTGAGC+TGG + Chr7:13921954-13921973 MsG0780036792.01.T01:intron 45.0%
! CTCCATAAAGCACCAATACC+AGG - Chr7:13923933-13923952 None:intergenic 45.0%
! GTTTAAGACGCTTCTGTGCA+AGG + Chr7:13923770-13923789 MsG0780036792.01.T01:intron 45.0%
!! AGGTTAGAGAAGGGTGTTGA+GGG + Chr7:13922988-13923007 MsG0780036792.01.T01:intron 45.0%
!! GGGCTTGTTGAGGGTTAAAT+CGG + Chr7:13922923-13922942 MsG0780036792.01.T01:intron 45.0%
!! GTCCTGGTATTGGTGCTTTA+TGG + Chr7:13923928-13923947 MsG0780036792.01.T01:intron 45.0%
!! GTTCACTGATTCTACCAGCA+AGG + Chr7:13921741-13921760 MsG0780036792.01.T01:CDS 45.0%
!! TTTTCCAGGTGGATTCAAGG+AGG + Chr7:13923423-13923442 MsG0780036792.01.T01:intron 45.0%
!!! CTCTGTTGTTTTGAGTGTCC+TGG + Chr7:13923912-13923931 MsG0780036792.01.T01:intron 45.0%
!!! GTTTTTTTCCCTGCGTCTCT+AGG + Chr7:13923686-13923705 MsG0780036792.01.T01:intron 45.0%
!!! TGAAGGTGGTTTTGTTCGCT+TGG + Chr7:13923197-13923216 MsG0780036792.01.T01:intron 45.0%
AAGCTCGACCCCATCTGATT+GGG + Chr7:13922360-13922379 MsG0780036792.01.T01:intron 50.0%
AATCGGTTACCAGCAAAGCG+TGG + Chr7:13923232-13923251 MsG0780036792.01.T01:intron 50.0%
ACAACCCCGATGGCAGATAT+CGG - Chr7:13922253-13922272 None:intergenic 50.0%
ACCTCAACAGCTCAAAGAGC+AGG - Chr7:13922198-13922217 None:intergenic 50.0%
ACGATACACCCAGTCATCCA+CGG - Chr7:13923090-13923109 None:intergenic 50.0%
ACGTCCATTTGTGGGTCGTA+AGG + Chr7:13921609-13921628 MsG0780036792.01.T01:CDS 50.0%
CAGTGGTGTTCCAGAACACT+CGG - Chr7:13923667-13923686 None:intergenic 50.0%
CATACCAAAGTTGCATCCCC+TGG - Chr7:13924259-13924278 None:intergenic 50.0%
GAGGGTTAAATCGGAAGGGT+TGG + Chr7:13922932-13922951 MsG0780036792.01.T01:intron 50.0%
GAGGGTTATATCACCAGCTC+AGG - Chr7:13921970-13921989 None:intergenic 50.0%
GCTTGGCTATTGCTCTTGTC+TGG + Chr7:13922275-13922294 MsG0780036792.01.T01:intron 50.0%
GTTGAACCTGCAATCAAGCC+AGG + Chr7:13924238-13924257 MsG0780036792.01.T01:CDS 50.0%
GTTGGGTGTTTGATTCACCG+TGG + Chr7:13922950-13922969 MsG0780036792.01.T01:intron 50.0%
GTTTGAAGAGTCTGTGGTGC+TGG + Chr7:13921231-13921250 MsG0780036792.01.T01:five_prime_UTR 50.0%
TCCTGCTCTTTGAGCTGTTG+AGG + Chr7:13922194-13922213 MsG0780036792.01.T01:intron 50.0%
TCTTCCTCCTTGAATCCACC+TGG - Chr7:13923430-13923449 None:intergenic 50.0%
TGAACCTGCAATCAAGCCAG+GGG + Chr7:13924240-13924259 MsG0780036792.01.T01:CDS 50.0%
TGGAGCGTATCACAACTCAG+AGG - Chr7:13922143-13922162 None:intergenic 50.0%
TGTGTAATGGCCGAGTGTTC+TGG + Chr7:13923654-13923673 MsG0780036792.01.T01:intron 50.0%
TGTTCCCCGATATCTGCCAT+CGG + Chr7:13922244-13922263 MsG0780036792.01.T01:intron 50.0%
TTACGACCCACAAATGGACG+TGG - Chr7:13921610-13921629 None:intergenic 50.0%
TTCAGTCCGTTTGGAGAGCT+AGG + Chr7:13923490-13923509 MsG0780036792.01.T01:intron 50.0%
! CGTGGTGGAAGAAGATAGAG+AGG + Chr7:13922968-13922987 MsG0780036792.01.T01:intron 50.0%
!! GAGGTTAGAGAAGGGTGTTG+AGG + Chr7:13922987-13923006 MsG0780036792.01.T01:intron 50.0%
!! GGTTAGAGAAGGGTGTTGAG+GGG + Chr7:13922989-13923008 MsG0780036792.01.T01:intron 50.0%
!! GTTAGAGAAGGGTGTTGAGG+GGG + Chr7:13922990-13923009 MsG0780036792.01.T01:intron 50.0%
!!! CGCTATTTTGGTCGAAACCG+TGG + Chr7:13923070-13923089 MsG0780036792.01.T01:intron 50.0%
AACCCCGATGGCAGATATCG+GGG - Chr7:13922251-13922270 None:intergenic 55.0%
CAACCCCGATGGCAGATATC+GGG - Chr7:13922252-13922271 None:intergenic 55.0%
CAAGCCAGGGGATGCAACTT+TGG + Chr7:13924252-13924271 MsG0780036792.01.T01:CDS 55.0%
CAAGCTCGACCCCATCTGAT+TGG + Chr7:13922359-13922378 MsG0780036792.01.T01:intron 55.0%
CAATCAGATGGGGTCGAGCT+TGG - Chr7:13922361-13922380 None:intergenic 55.0%
GGGTGTTTGATTCACCGTGG+TGG + Chr7:13922953-13922972 MsG0780036792.01.T01:intron 55.0%
GGTCGAAACCGTGGATGACT+GGG + Chr7:13923079-13923098 MsG0780036792.01.T01:intron 55.0%
GTTCCCCGATATCTGCCATC+GGG + Chr7:13922245-13922264 MsG0780036792.01.T01:intron 55.0%
TGGTCGAAACCGTGGATGAC+TGG + Chr7:13923078-13923097 MsG0780036792.01.T01:intron 55.0%
TTCCCCGATATCTGCCATCG+GGG + Chr7:13922246-13922265 MsG0780036792.01.T01:intron 55.0%
TTGAGGGGGCAAGTAAGGGT+TGG + Chr7:13923004-13923023 MsG0780036792.01.T01:intron 55.0%
! GGTGTTGAGGGGGCAAGTAA+GGG + Chr7:13923000-13923019 MsG0780036792.01.T01:intron 55.0%
! GTCTGTGGTGCTGGGTTAAG+TGG + Chr7:13921240-13921259 MsG0780036792.01.T01:five_prime_UTR 55.0%
!! ACTGCTTTGGAGGAGCAGGA+GGG - Chr7:13921988-13922007 None:intergenic 55.0%
!! CTTCACTGCTTTGGAGGAGC+AGG - Chr7:13921992-13922011 None:intergenic 55.0%
! GCATCCCCTGGCTTGATTGC+AGG - Chr7:13924247-13924266 None:intergenic 60.0%
!! CACTGCTTTGGAGGAGCAGG+AGG - Chr7:13921989-13922008 None:intergenic 60.0%
!! GGGTGTTGAGGGGGCAAGTA+AGG + Chr7:13922999-13923018 MsG0780036792.01.T01:intron 60.0%
AGATGGGGTCGAGCTTGGCG+TGG - Chr7:13922356-13922375 None:intergenic 65.0%
AGCCAAGCGCACAACCCCGA+TGG - Chr7:13922263-13922282 None:intergenic 65.0%
GATGGGGTCGAGCTTGGCGT+GGG - Chr7:13922355-13922374 None:intergenic 65.0%
TGCCATCGGGGTTGTGCGCT+TGG + Chr7:13922258-13922277 MsG0780036792.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 13921221 13924747 13921221 ID=MsG0780036792.01;Name=MsG0780036792.01
Chr7 mRNA 13921221 13924747 13921221 ID=MsG0780036792.01.T01;Parent=MsG0780036792.01;Name=MsG0780036792.01.T01;_AED=0.37;_eAED=0.37;_QI=50|1|1|1|0.75|0.6|5|220|223
Chr7 exon 13921221 13921630 13921221 ID=MsG0780036792.01.T01:exon:2824;Parent=MsG0780036792.01.T01
Chr7 exon 13921718 13921832 13921718 ID=MsG0780036792.01.T01:exon:2825;Parent=MsG0780036792.01.T01
Chr7 exon 13922627 13922708 13922627 ID=MsG0780036792.01.T01:exon:2826;Parent=MsG0780036792.01.T01
Chr7 exon 13924222 13924273 13924222 ID=MsG0780036792.01.T01:exon:2827;Parent=MsG0780036792.01.T01
Chr7 exon 13924465 13924747 13924465 ID=MsG0780036792.01.T01:exon:2828;Parent=MsG0780036792.01.T01
Chr7 five_prime_UTR 13921221 13921270 13921221 ID=MsG0780036792.01.T01:five_prime_utr;Parent=MsG0780036792.01.T01
Chr7 CDS 13921271 13921630 13921271 ID=MsG0780036792.01.T01:cds;Parent=MsG0780036792.01.T01
Chr7 CDS 13921718 13921832 13921718 ID=MsG0780036792.01.T01:cds;Parent=MsG0780036792.01.T01
Chr7 CDS 13922627 13922708 13922627 ID=MsG0780036792.01.T01:cds;Parent=MsG0780036792.01.T01
Chr7 CDS 13924222 13924273 13924222 ID=MsG0780036792.01.T01:cds;Parent=MsG0780036792.01.T01
Chr7 CDS 13924465 13924527 13924465 ID=MsG0780036792.01.T01:cds;Parent=MsG0780036792.01.T01
Chr7 three_prime_UTR 13924528 13924747 13924528 ID=MsG0780036792.01.T01:three_prime_utr;Parent=MsG0780036792.01.T01
Gene Sequence

>MsG0780036792.01.T01

ATGTTAATGGTGTGTAGTTCCATTAGCAGCACACAATCACAAACTTTGAACTCAGTTTCACCTTTGACTTCTTTGTCACATAGAAGAATCTATGTTCCAAATTCAGTTACAAAGGTTGTTGGAGTTAGAAGAAGAGGTAGAAAATGGAATATGGCAGTTAATAAGAGTGGTGAAAATAATTCAGTTACAACAACTACCACTAGCTTTGATGATAACAACGTTGTAGATTCAGCTTCAACAGTGGTGAGAAATTTCTATGAAGGAATCAATGCACATGATGTTGATTCTGTACAATATCTTATCTCTGAAAATTGTGTGTATGAGGACCTTGTCTTTCCACGTCCATTTGTGGGTCGTAAGGAAATCATAGAGTTCTTCAAAAAGTTCACTGATTCTACCAGCAAGGATCTGCAGTTTATTATTGATGATTTGTCTACGGAGGATTCATCATTAGTTGGAGTGATCTGGCATTTAGAATGGAAAGGAAAGACTTTTCCCTTTAGCAAAGGATGCAGTTTTTATCATTTGGAAGTGATCAATGGCAAGAGACAGATCACATATGGACGGGACTGTGTTGAACCTGCAATCAAGCCAGGGGATGCAACTTTGGCAGTGATAATGAGTGTGACATGGCTTCTTCAACGATTTCCTCAGTTGGCAGACCGATTATAG

Protein sequence

>MsG0780036792.01.T01

MLMVCSSISSTQSQTLNSVSPLTSLSHRRIYVPNSVTKVVGVRRRGRKWNMAVNKSGENNSVTTTTTSFDDNNVVDSASTVVRNFYEGINAHDVDSVQYLISENCVYEDLVFPRPFVGRKEIIEFFKKFTDSTSKDLQFIIDDLSTEDSSLVGVIWHLEWKGKTFPFSKGCSFYHLEVINGKRQITYGRDCVEPAIKPGDATLAVIMSVTWLLQRFPQLADRL*