AlfalfaGEDB | MsG0480020502.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020502.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020502.01.T01	XP_024636833.1	70.992	262	67	3	50	302	56	317	2.30E-105	320

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020502.01.T01	A0A396I6X6	70.992	262	67	3	50	302	56	317	1.10e-105	320

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047885.01	MsG0480020502.01	0.831591	1.530670e-55	1.668770e-52
MsG0080048065.01	MsG0480020502.01	0.816536	5.258155e-52	3.735750e-49
MsG0080048727.01	MsG0480020502.01	0.871227	8.027557e-67	3.213516e-63
MsG0080048748.01	MsG0480020502.01	0.825103	5.626346e-54	5.079729e-51
MsG0080048773.01	MsG0480020502.01	0.840669	7.564062e-58	1.085185e-54
MsG0080048802.01	MsG0480020502.01	0.830169	3.416698e-55	3.571990e-52
MsG0080048820.01	MsG0480020502.01	0.821227	4.515452e-53	3.652247e-50
MsG0080048849.01	MsG0480020502.01	0.835485	1.632824e-56	1.999554e-53
MsG0080048878.01	MsG0480020502.01	0.807444	5.040645e-50	2.807941e-47
MsG0080048938.01	MsG0480020502.01	0.808861	2.515415e-50	1.454236e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020502.01.T01	MTR_4g052500	69.106	246	67	3	50	286	56	301	5.04e-92	283

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020502.01.T01	AT5G22340	54.682	267	107	3	50	302	57	323	8.87e-91	273
MsG0480020502.01.T01	AT5G22340	52.137	234	98	3	50	269	57	290	1.01e-69	220

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Find 15 sgRNAs with CRISPR-Local

Find 623 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTGTTCTGCTGAACA+TGG	0.650543	4:-42519972	None:intergenic
ACAAACATCCCAAACATGGC+TGG	0.556898	4:-42519844	None:intergenic
AGCTTGTGCCAGCCATGTTT+GGG	0.359430	4:+42519836	MsG0480020501.01.T01:intron
ATGTAAGTAGTGCTTAGTTC+CGG	0.451394	4:-42520033	None:intergenic
CAGCTTGTGCCAGCCATGTT+TGG	0.234831	4:+42519835	MsG0480020501.01.T01:intron
CTCAGCCTTCAAAATTCTTC+TGG	0.224073	4:-42519928	None:intergenic
CTGGTCATTTCCAATATTTG+AGG	0.526896	4:-42520004	None:intergenic
GTAGACAAACATCCCAAACA+TGG	0.634660	4:-42519848	None:intergenic
GTATGTGTATATTGAAAGAA+TGG	0.484252	4:+42520083	MsG0480020501.01.T01:intron
TATAGAGACAATAAAGACTT+AGG	0.447368	4:+42519895	MsG0480020501.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCATTTCCACAACAAAA+TGG	-	Chr4:42511188-42511207	None:intergenic	30.0%
AAAGATGAAGTTTGAGAGAA+AGG	+	Chr4:42512042-42512061	MsG0480020502.01.T01:intron	30.0%
AAAGCGCATTATAGTGAAAT+AGG	+	Chr4:42512550-42512569	MsG0480020502.01.T01:intron	30.0%
AAAGTGGTCATAAAGGTAAA+AGG	-	Chr4:42515440-42515459	None:intergenic	30.0%
AAGTGCATTTCCATTTACAT+TGG	-	Chr4:42510995-42511014	None:intergenic	30.0%
ACAATTCTGCACCAATAAAT+AGG	+	Chr4:42517524-42517543	MsG0480020501.01.T01:CDS	30.0%
ACACGAATCAGTAACAAATA+AGG	-	Chr4:42514196-42514215	None:intergenic	30.0%
ACACTCCTCTGATTAAAATT+AGG	-	Chr4:42516751-42516770	None:intergenic	30.0%
AGATTAGAATAAGTAGGTCT+TGG	-	Chr4:42512496-42512515	None:intergenic	30.0%
AGGTTGTAGATTGAATTTGA+AGG	+	Chr4:42514494-42514513	MsG0480020502.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	42510348	42520140	42510348	ID=MsG0480020502.01;
Chr4	mRNA	42510348	42520140	42510348	ID=MsG0480020502.01.T01;Parent=MsG0480020502.01
Chr4	exon	42510348	42510482	42510348	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42510431	42510482	42510431	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	CDS	42511212	42511318	42511212	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42511212	42511318	42511212	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42511917	42511933	42511917	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42511917	42511933	42511917	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42512146	42512157	42512146	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42512146	42512157	42512146	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42512259	42512282	42512259	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42512259	42512282	42512259	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42514336	42514354	42514336	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42514336	42514354	42514336	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42514444	42514495	42514444	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42514444	42514495	42514444	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42514582	42514601	42514582	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42514582	42514601	42514582	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42515060	42515088	42515060	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42515060	42515088	42515060	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42516489	42516503	42516489	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42516489	42516503	42516489	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42516703	42516730	42516703	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42516703	42516730	42516703	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42517387	42517399	42517387	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42517387	42517399	42517387	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42517550	42517561	42517550	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42517550	42517561	42517550	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42517763	42517800	42517763	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42517763	42517800	42517763	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42517955	42518035	42517955	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42517955	42518035	42517955	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42518331	42518365	42518331	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42518331	42518365	42518331	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42519119	42519208	42519119	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42519119	42519208	42519119	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42519319	42519478	42519319	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42519319	42519478	42519319	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01
Chr4	CDS	42519838	42519942	42519838	ID=MsG0480020502.01.T01.cds;Parent=MsG0480020502.01.T01
Chr4	exon	42519838	42520140	42519838	ID=MsG0480020502.01.T01.exon;Parent=MsG0480020502.01.T01

Gene Sequence

>MsG0480020502.01.T01

ATGAGTGGGGGTGGAACAAATTCTCGGTTGGAACCTGTAGGATCCAGTGTAGAATCTTCAATCTCATCATCACTGTACCGGAATGCCAAAACCATTTTGCTGTGGAAATGGTTTCTGCGAGTTGGACTCCAAAACCATTTTGCTGTGGAAATGGTTTATAAGAGGTTTCTAAAGATCAGATCTGAAACGGGTAGGGTGGTGCCCAAACTTTTTTTTAGGGTTTTGAGTCGTGACTGTTTATTGAGTTGTAAACTCGTGTCCTACACCAAAGCTTTGAAGCAAGATGGGATCTCAGATCTAGGAGTTCTTCGATTAAAGCTGGTCCAAGCTAGCGTCTCTTTGACCGAAATAGCTTATGTTAAAAAAGGGCCTCTGTTGCGAATTCTGTATGACTGCAAAGACAATCCAAAGAAACTGAACGCGGTCAAATACCAATCTCTCAAGAAAGAATTACTACTTCTCTCTGTGGGTATTGGATTGGGTTGTAGCGGATATTGCTTGATAGTTTTTTCCGTACAGGCTACTATAAGTTATGCGATTGGGGTCCTTTTCAGTTGTTTGTACCTTCAGCTCTTGTATCAACATGCAGACAACATATCCAGTGAAACTGTTCCTCAAATATTCATGAAAAAGAAGTCAAAGAAAATTGGTATAAGAAGTGAAGACCTTAGTGATTCTTTCGAGAAAACAATCAGGGGTAGTGGTATAGCACTTTCATCTCCAAGGCTTGTGATCCCGGCAGCAATTTATGGACTTTGGGCTGTGTCTCATCAGTATTTTATCAACGACTTGTTGGATTTTCAGCTTGTGCCAGCCATGTTTGGGATGTTTGTCTACAAAGCTGCTGCTCTTGTGCAAGTTTATAGAGACAATAAAGACTTAGGCTTTGAATTTCCAGAAGAATTTTGA

Protein sequence

>MsG0480020502.01.T01

MSGGGTNSRLEPVGSSVESSISSSLYRNAKTILLWKWFLRVGLQNHFAVEMVYKRFLKIRSETGRVVPKLFFRVLSRDCLLSCKLVSYTKALKQDGISDLGVLRLKLVQASVSLTEIAYVKKGPLLRILYDCKDNPKKLNAVKYQSLKKELLLLSVGIGLGCSGYCLIVFSVQATISYAIGVLFSCLYLQLLYQHADNISSETVPQIFMKKKSKKIGIRSEDLSDSFEKTIRGSGIALSSPRLVIPAAIYGLWAVSHQYFINDLLDFQLVPAMFGMFVYKAAALVQVYRDNKDLGFEFPEEF*