Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025552.01.T01 | XP_013453681.2 | 100 | 58 | 0 | 0 | 12 | 69 | 63 | 120 | 3.07E-32 | 117 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025552.01.T01 | G7KF23 | 100.000 | 58 | 0 | 0 | 12 | 69 | 63 | 120 | 1.47e-32 | 117 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048889.01 | MsG0580025552.01 | 0.847436 | 1.157804e-59 | 2.057817e-56 |
MsG0080048919.01 | MsG0580025552.01 | -0.802673 | 5.016651e-49 | 2.472148e-46 |
MsG0080049066.01 | MsG0580025552.01 | -0.803602 | 3.223504e-49 | 1.626776e-46 |
MsG0180000552.01 | MsG0580025552.01 | 0.805211 | 1.489501e-49 | 7.834351e-47 |
MsG0180004787.01 | MsG0580025552.01 | -0.800242 | 1.579677e-48 | 7.318845e-46 |
MsG0180005369.01 | MsG0580025552.01 | -0.803144 | 4.010296e-49 | 2.000062e-46 |
MsG0280006381.01 | MsG0580025552.01 | -0.811450 | 6.959353e-51 | 4.309320e-48 |
MsG0280011267.01 | MsG0580025552.01 | 0.821227 | 4.517346e-53 | 3.653732e-50 |
MsG0280011269.01 | MsG0580025552.01 | 0.828884 | 7.012117e-55 | 7.060111e-52 |
MsG0380011974.01 | MsG0580025552.01 | 0.809992 | 1.438016e-50 | 8.567962e-48 |
MsG0380012148.01 | MsG0580025552.01 | -0.811860 | 5.668013e-51 | 3.547789e-48 |
MsG0380012889.01 | MsG0580025552.01 | 0.818001 | 2.461041e-52 | 1.820167e-49 |
MsG0380013114.01 | MsG0580025552.01 | -0.802677 | 5.007515e-49 | 2.467884e-46 |
MsG0380013272.01 | MsG0580025552.01 | 0.810067 | 1.385537e-50 | 8.271109e-48 |
MsG0380013843.01 | MsG0580025552.01 | 0.801625 | 8.244087e-49 | 3.955512e-46 |
MsG0380014639.01 | MsG0580025552.01 | -0.819444 | 1.157730e-52 | 8.910724e-50 |
MsG0380014642.01 | MsG0580025552.01 | -0.813199 | 2.888008e-51 | 1.873680e-48 |
MsG0380014735.01 | MsG0580025552.01 | -0.806487 | 8.030807e-50 | 4.364404e-47 |
MsG0480019666.01 | MsG0580025552.01 | 0.827532 | 1.484916e-54 | 1.437413e-51 |
MsG0480021360.01 | MsG0580025552.01 | 0.800396 | 1.469788e-48 | 6.836493e-46 |
MsG0480022428.01 | MsG0580025552.01 | 0.829641 | 4.593575e-55 | 4.729517e-52 |
MsG0480023152.01 | MsG0580025552.01 | -0.812651 | 3.808847e-51 | 2.435330e-48 |
MsG0480023242.01 | MsG0580025552.01 | -0.810672 | 1.025816e-50 | 6.222492e-48 |
MsG0480023244.01 | MsG0580025552.01 | -0.818823 | 1.603245e-52 | 1.212878e-49 |
MsG0480023695.01 | MsG0580025552.01 | -0.811598 | 6.463547e-51 | 4.017640e-48 |
MsG0580024398.01 | MsG0580025552.01 | 0.824500 | 7.803269e-54 | 6.924134e-51 |
MsG0580024442.01 | MsG0580025552.01 | -0.800357 | 1.496934e-48 | 6.955993e-46 |
MsG0580024804.01 | MsG0580025552.01 | -0.800236 | 1.584417e-48 | 7.339670e-46 |
MsG0580025105.01 | MsG0580025552.01 | -0.809547 | 1.792985e-50 | 1.055778e-47 |
MsG0580025524.01 | MsG0580025552.01 | 0.824843 | 6.478944e-54 | 5.806397e-51 |
MsG0580025550.01 | MsG0580025552.01 | 0.832318 | 1.012455e-55 | 1.127466e-52 |
MsG0580025552.01 | MsG0580025961.01 | 0.801045 | 1.083474e-48 | 5.123630e-46 |
MsG0580025552.01 | MsG0580027276.01 | -0.803755 | 2.995571e-49 | 1.517694e-46 |
MsG0580025552.01 | MsG0580029177.01 | -0.800419 | 1.453899e-48 | 6.766835e-46 |
MsG0580025552.01 | MsG0580029792.01 | -0.801342 | 9.423102e-49 | 4.489209e-46 |
MsG0580025552.01 | MsG0680030960.01 | 0.804449 | 2.148613e-49 | 1.108135e-46 |
MsG0580025552.01 | MsG0680035584.01 | -0.819258 | 1.276303e-52 | 9.772466e-50 |
MsG0580025552.01 | MsG0780037182.01 | 0.803999 | 2.665774e-49 | 1.359126e-46 |
MsG0580025552.01 | MsG0780038305.01 | 0.833312 | 5.732345e-56 | 6.576969e-53 |
MsG0580025552.01 | MsG0780038914.01 | 0.805666 | 1.195759e-49 | 6.363438e-47 |
MsG0580025552.01 | MsG0780039431.01 | 0.821994 | 3.002750e-53 | 2.481573e-50 |
MsG0580025552.01 | MsG0780039619.01 | 0.814569 | 1.441072e-51 | 9.703924e-49 |
MsG0580025552.01 | MsG0780039839.01 | -0.803901 | 2.794667e-49 | 1.421253e-46 |
MsG0580025552.01 | MsG0780039979.01 | 0.812672 | 3.767843e-51 | 2.410503e-48 |
MsG0580025552.01 | MsG0780041180.01 | 0.801164 | 1.024341e-48 | 4.858329e-46 |
MsG0580025552.01 | MsG0780041316.01 | 0.804302 | 2.306248e-49 | 1.184955e-46 |
MsG0580025552.01 | MsG0780041691.01 | -0.802783 | 4.762615e-49 | 2.353630e-46 |
MsG0580025552.01 | MsG0880042122.01 | 0.827490 | 1.520030e-54 | 1.469696e-51 |
MsG0580025552.01 | MsG0880043212.01 | 0.806071 | 9.827877e-50 | 5.284612e-47 |
MsG0580025552.01 | MsG0880043217.01 | 0.811898 | 5.561075e-51 | 3.484379e-48 |
MsG0580025552.01 | MsG0880043906.01 | 0.829712 | 4.414333e-55 | 4.554697e-52 |
MsG0580025552.01 | MsG0880045968.01 | -0.818408 | 1.990670e-52 | 1.489004e-49 |
MsG0580025552.01 | MsG0880046010.01 | -0.808815 | 2.573233e-50 | 1.485859e-47 |
MsG0580025552.01 | MsG0880046174.01 | -0.801679 | 8.035137e-49 | 3.860579e-46 |
MsG0580025552.01 | MsG0880046341.01 | -0.810489 | 1.123751e-50 | 6.782967e-48 |
MsG0580025552.01 | MsG0880046932.01 | 0.812752 | 3.619754e-51 | 2.320563e-48 |
MsG0580025552.01 | MsG0880047493.01 | 0.835140 | 1.995461e-56 | 2.418282e-53 |
MsG0380016300.01 | MsG0580025552.01 | 0.805754 | 1.145835e-49 | 6.111955e-47 |
MsG0380016476.01 | MsG0580025552.01 | 0.843582 | 1.282026e-58 | 2.015169e-55 |
MsG0380016718.01 | MsG0580025552.01 | -0.805993 | 1.020767e-49 | 5.478132e-47 |
MsG0380017812.01 | MsG0580025552.01 | -0.800981 | 1.116775e-48 | 5.272485e-46 |
MsG0280006883.01 | MsG0580025552.01 | 0.811864 | 5.654906e-51 | 3.540058e-48 |
MsG0280007291.01 | MsG0580025552.01 | -0.808790 | 2.604203e-50 | 1.502729e-47 |
MsG0280009742.01 | MsG0580025552.01 | -0.811154 | 8.068978e-51 | 4.957388e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580025552.01.T01 | MTR_5g030310 | 100.000 | 58 | 0 | 0 | 12 | 69 | 63 | 120 | 3.72e-36 | 117 |
MsG0580025552.01.T01 | MTR_5g430440 | 100.000 | 58 | 0 | 0 | 12 | 69 | 63 | 120 | 4.24e-36 | 117 |
MsG0580025552.01.T01 | MTR_5g430430 | 79.310 | 58 | 12 | 0 | 12 | 69 | 63 | 120 | 1.16e-28 | 99.0 |
MsG0580025552.01.T01 | MTR_5g030290 | 79.310 | 58 | 12 | 0 | 12 | 69 | 63 | 120 | 1.16e-28 | 99.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 27 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATATATCATTCTAAGAATA+TGG | 0.288449 | 5:-20360266 | MsG0580025552.01.T01:exon |
TTACAGACCAATAGCATAGT+AGG | 0.341240 | 5:+20359254 | None:intergenic |
AGGGCCTTCAGTCTTGAAAA+TGG | 0.356723 | 5:+20359362 | None:intergenic |
AATTGACCCTACTATGCTAT+TGG | 0.392442 | 5:-20359261 | MsG0580025552.01.T01:three_prime_UTR |
TTATGCAGTGATGGTGGAGC+TGG | 0.397441 | 5:-20359459 | MsG0580025552.01.T01:intron |
CTTGCTCTTGAGTGAAGCTC+TGG | 0.411535 | 5:+20360239 | None:intergenic |
TCACTGCTACTCTCAATAAC+TGG | 0.438274 | 5:+20359432 | None:intergenic |
CCCTTGCCAGAGTTTACACC+AGG | 0.459349 | 5:+20359342 | None:intergenic |
AATAGCATAGTAGGGTCAAT+TGG | 0.465116 | 5:+20359263 | None:intergenic |
TGTGCCATCAGTTATGAAGT+TGG | 0.489271 | 5:-20359193 | MsG0580025552.01.T01:three_prime_UTR |
TTAAGCAGCAGTGTGATGTT+TGG | 0.514503 | 5:-20359151 | MsG0580025552.01.T01:three_prime_UTR |
TACAGACCAATAGCATAGTA+GGG | 0.519482 | 5:+20359255 | None:intergenic |
CCCTGGTGTAAACTCTGGCA+AGG | 0.541663 | 5:-20359343 | MsG0580025552.01.T01:CDS |
TATGCAGTGATGGTGGAGCT+GGG | 0.557903 | 5:-20359458 | MsG0580025552.01.T01:intron |
ACATTCTGCAAGTGTGGTGA+AGG | 0.561546 | 5:-20359396 | MsG0580025552.01.T01:CDS |
ATTGAGAGTAGCAGTGACAA+TGG | 0.563224 | 5:-20359426 | MsG0580025552.01.T01:CDS |
CAGAGCTTCACTCAAGAGCA+AGG | 0.567749 | 5:-20360238 | MsG0580025552.01.T01:CDS |
TTGCTCTTGAGTGAAGCTCT+GGG | 0.573531 | 5:+20360240 | None:intergenic |
CAAACCAACTTCATAACTGA+TGG | 0.577062 | 5:+20359189 | None:intergenic |
AAACTCTTATGCAGTGATGG+TGG | 0.602169 | 5:-20359465 | MsG0580025552.01.T01:intron |
GAAGGCCCTGGTGTAAACTC+TGG | 0.603912 | 5:-20359348 | MsG0580025552.01.T01:CDS |
CCTGGTGTAAACTCTGGCAA+GGG | 0.620143 | 5:-20359342 | MsG0580025552.01.T01:CDS |
AGAGCTTCACTCAAGAGCAA+GGG | 0.651871 | 5:-20360237 | MsG0580025552.01.T01:intron |
TCTGCAAGTGTGGTGAAGGG+TGG | 0.652623 | 5:-20359392 | MsG0580025552.01.T01:CDS |
AGTGAAACATTCTGCAAGTG+TGG | 0.671634 | 5:-20359402 | MsG0580025552.01.T01:CDS |
CATTCTGCAAGTGTGGTGAA+GGG | 0.681189 | 5:-20359395 | MsG0580025552.01.T01:CDS |
CCTTGCCAGAGTTTACACCA+GGG | 0.773669 | 5:+20359343 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAATTGTACTAAATAA+AGG | - | Chr5:20360174-20360193 | MsG0580025552.01.T01:intron | 10.0% |
!! | AAAAAATTGTACTAAATAAA+GGG | - | Chr5:20360175-20360194 | MsG0580025552.01.T01:intron | 10.0% |
!! | TTAATTATTTGTTTGTAATA+TGG | - | Chr5:20359643-20359662 | MsG0580025552.01.T01:intron | 10.0% |
!! | TAATATGAAATTGAGATTTA+AGG | + | Chr5:20359765-20359784 | None:intergenic | 15.0% |
!! | TGATCGAAAAATAAATAAAT+TGG | - | Chr5:20360284-20360303 | MsG0580025552.01.T01:five_prime_UTR | 15.0% |
!!! | AATATATCATTCTAAGAATA+TGG | - | Chr5:20359141-20359160 | MsG0580025552.01.T01:three_prime_UTR | 15.0% |
!! | AAACTGTAAAGATGAAATAA+AGG | + | Chr5:20359212-20359231 | None:intergenic | 20.0% |
!! | AATTTATCGTTCAACTTATT+AGG | + | Chr5:20359727-20359746 | None:intergenic | 20.0% |
!! | ATAATTAATAATAAGAGGAG+TGG | + | Chr5:20359519-20359538 | None:intergenic | 20.0% |
!! | TATCGTGGAAAAAAAATATA+AGG | - | Chr5:20359573-20359592 | MsG0580025552.01.T01:intron | 20.0% |
!! | TTATTAGGTAAAAGTTCAAT+AGG | + | Chr5:20359712-20359731 | None:intergenic | 20.0% |
!! | TTCTATAAGCATAAAATTAG+TGG | + | Chr5:20359837-20359856 | None:intergenic | 20.0% |
!!! | ACGAAAATAGAGCATTATTT+TGG | + | Chr5:20359298-20359317 | None:intergenic | 25.0% |
!!! | TTAACCAATAAGTTTTGTGT+AGG | - | Chr5:20359334-20359353 | MsG0580025552.01.T01:CDS | 25.0% |
CAAAGTCAAGATAAAAACTC+AGG | - | Chr5:20359360-20359379 | MsG0580025552.01.T01:CDS | 30.0% | |
! | CTGAGTTTTTATCTTGACTT+TGG | + | Chr5:20359362-20359381 | None:intergenic | 30.0% |
!! | TGGTGCAATCATTTTAACAA+TGG | + | Chr5:20359673-20359692 | None:intergenic | 30.0% |
AATAGCATAGTAGGGTCAAT+TGG | + | Chr5:20360147-20360166 | None:intergenic | 35.0% | |
AATTGACCCTACTATGCTAT+TGG | - | Chr5:20360146-20360165 | MsG0580025552.01.T01:intron | 35.0% | |
ATCAAACTCTTATGCAGTGA+TGG | - | Chr5:20359939-20359958 | MsG0580025552.01.T01:intron | 35.0% | |
ATTTGACAAGAAAGCTATCG+TGG | - | Chr5:20359558-20359577 | MsG0580025552.01.T01:intron | 35.0% | |
CAAACCAACTTCATAACTGA+TGG | + | Chr5:20360221-20360240 | None:intergenic | 35.0% | |
GGTTCCTACACAAAACTTAT+TGG | + | Chr5:20359341-20359360 | None:intergenic | 35.0% | |
GTTGGACATGTGTTATAACT+AGG | - | Chr5:20359421-20359440 | MsG0580025552.01.T01:CDS | 35.0% | |
TACAGACCAATAGCATAGTA+GGG | + | Chr5:20360155-20360174 | None:intergenic | 35.0% | |
TAGGTAAGATCTTCATGTCA+TGG | + | Chr5:20359693-20359712 | None:intergenic | 35.0% | |
TGTGTTATAACTAGGACTGA+AGG | - | Chr5:20359429-20359448 | MsG0580025552.01.T01:CDS | 35.0% | |
TTACAGACCAATAGCATAGT+AGG | + | Chr5:20360156-20360175 | None:intergenic | 35.0% | |
! | GGCAAAGTTTTTGCTAAATG+TGG | - | Chr5:20359460-20359479 | MsG0580025552.01.T01:intron | 35.0% |
!! | TGTTCCATTTTCAAGACTGA+AGG | - | Chr5:20360041-20360060 | MsG0580025552.01.T01:intron | 35.0% |
AAACTCTTATGCAGTGATGG+TGG | - | Chr5:20359942-20359961 | MsG0580025552.01.T01:intron | 40.0% | |
AGTGAAACATTCTGCAAGTG+TGG | - | Chr5:20360005-20360024 | MsG0580025552.01.T01:intron | 40.0% | |
ATTGAGAGTAGCAGTGACAA+TGG | - | Chr5:20359981-20360000 | MsG0580025552.01.T01:intron | 40.0% | |
CAAGATAAAAACTCAGGCCA+GGG | - | Chr5:20359366-20359385 | MsG0580025552.01.T01:CDS | 40.0% | |
TAGCAAAAACTTTGCCCATC+AGG | + | Chr5:20359456-20359475 | None:intergenic | 40.0% | |
TCAAGATAAAAACTCAGGCC+AGG | - | Chr5:20359365-20359384 | MsG0580025552.01.T01:CDS | 40.0% | |
TCACTGCTACTCTCAATAAC+TGG | + | Chr5:20359978-20359997 | None:intergenic | 40.0% | |
TGTGCCATCAGTTATGAAGT+TGG | - | Chr5:20360214-20360233 | MsG0580025552.01.T01:intron | 40.0% | |
TTAAGCAGCAGTGTGATGTT+TGG | - | Chr5:20360256-20360275 | MsG0580025552.01.T01:exon | 40.0% | |
ACATTCTGCAAGTGTGGTGA+AGG | - | Chr5:20360011-20360030 | MsG0580025552.01.T01:intron | 45.0% | |
AGAGCTTCACTCAAGAGCAA+GGG | - | Chr5:20359170-20359189 | MsG0580025552.01.T01:three_prime_UTR | 45.0% | |
AGGGCCTTCAGTCTTGAAAA+TGG | + | Chr5:20360048-20360067 | None:intergenic | 45.0% | |
CATTCTGCAAGTGTGGTGAA+GGG | - | Chr5:20360012-20360031 | MsG0580025552.01.T01:intron | 45.0% | |
GTGTTGTGCAAGACAGGTAA+AGG | - | Chr5:20359399-20359418 | MsG0580025552.01.T01:CDS | 45.0% | |
TGTGCAAGACAGGTAAAGGT+TGG | - | Chr5:20359403-20359422 | MsG0580025552.01.T01:CDS | 45.0% | |
TTGCTCTTGAGTGAAGCTCT+GGG | + | Chr5:20359170-20359189 | None:intergenic | 45.0% | |
!! | ATTTTCAAGACTGAAGGCCC+TGG | - | Chr5:20360047-20360066 | MsG0580025552.01.T01:intron | 45.0% |
!! | TTAAAATAATTAATAATAAG+AGG | + | Chr5:20359524-20359543 | None:intergenic | 5.0% |
AAAAACTCAGGCCAGGGCTT+GGG | - | Chr5:20359372-20359391 | MsG0580025552.01.T01:CDS | 50.0% | |
ACTAGGACTGAAGGACCTGA+TGG | - | Chr5:20359438-20359457 | MsG0580025552.01.T01:CDS | 50.0% | |
CAGAGCTTCACTCAAGAGCA+AGG | - | Chr5:20359169-20359188 | MsG0580025552.01.T01:three_prime_UTR | 50.0% | |
CCTGGTGTAAACTCTGGCAA+GGG | - | Chr5:20360065-20360084 | MsG0580025552.01.T01:intron | 50.0% | |
CCTTGCCAGAGTTTACACCA+GGG | + | Chr5:20360067-20360086 | None:intergenic | 50.0% | |
CTAGGACTGAAGGACCTGAT+GGG | - | Chr5:20359439-20359458 | MsG0580025552.01.T01:CDS | 50.0% | |
CTTGCTCTTGAGTGAAGCTC+TGG | + | Chr5:20359171-20359190 | None:intergenic | 50.0% | |
GGCAATGTGTTGTGCAAGAC+AGG | - | Chr5:20359393-20359412 | MsG0580025552.01.T01:CDS | 50.0% | |
TAAAAACTCAGGCCAGGGCT+TGG | - | Chr5:20359371-20359390 | MsG0580025552.01.T01:CDS | 50.0% | |
!! | TATGCAGTGATGGTGGAGCT+GGG | - | Chr5:20359949-20359968 | MsG0580025552.01.T01:intron | 50.0% |
!! | TTATGCAGTGATGGTGGAGC+TGG | - | Chr5:20359948-20359967 | MsG0580025552.01.T01:intron | 50.0% |
ACAACACATTGCCCAAGCCC+TGG | + | Chr5:20359386-20359405 | None:intergenic | 55.0% | |
CCCTGGTGTAAACTCTGGCA+AGG | - | Chr5:20360064-20360083 | MsG0580025552.01.T01:intron | 55.0% | |
CCCTTGCCAGAGTTTACACC+AGG | + | Chr5:20360068-20360087 | None:intergenic | 55.0% | |
GAAGGCCCTGGTGTAAACTC+TGG | - | Chr5:20360059-20360078 | MsG0580025552.01.T01:intron | 55.0% | |
TCTGCAAGTGTGGTGAAGGG+TGG | - | Chr5:20360015-20360034 | MsG0580025552.01.T01:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 20359095 | 20360334 | 20359095 | ID=MsG0580025552.01;Name=MsG0580025552.01 |
Chr5 | mRNA | 20359095 | 20360334 | 20359095 | ID=MsG0580025552.01.T01;Parent=MsG0580025552.01;Name=MsG0580025552.01.T01;_AED=0.49;_eAED=0.49;_QI=65|0|1|1|0|0|2|201|69 |
Chr5 | exon | 20359095 | 20359473 | 20359095 | ID=MsG0580025552.01.T01:exon:8904;Parent=MsG0580025552.01.T01 |
Chr5 | exon | 20360238 | 20360334 | 20360238 | ID=MsG0580025552.01.T01:exon:8903;Parent=MsG0580025552.01.T01 |
Chr5 | five_prime_UTR | 20360270 | 20360334 | 20360270 | ID=MsG0580025552.01.T01:five_prime_utr;Parent=MsG0580025552.01.T01 |
Chr5 | CDS | 20360238 | 20360269 | 20360238 | ID=MsG0580025552.01.T01:cds;Parent=MsG0580025552.01.T01 |
Chr5 | CDS | 20359296 | 20359473 | 20359296 | ID=MsG0580025552.01.T01:cds;Parent=MsG0580025552.01.T01 |
Chr5 | three_prime_UTR | 20359095 | 20359295 | 20359095 | ID=MsG0580025552.01.T01:three_prime_utr;Parent=MsG0580025552.01.T01 |
Gene Sequence |
Protein sequence |